RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022609
(294 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 146 bits (371), Expect = 2e-42
Identities = 55/277 (19%), Positives = 116/277 (41%), Gaps = 11/277 (3%)
Query: 3 ISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGI-LWFTHVAMKNINIYKYPI 61
+ +LL KIFA +GS++I A+ +DSL+D+ A L +++ + +
Sbjct: 8 AATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPAD-DNHSF 66
Query: 62 GKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVK 121
G + + + + + ++ + + ++ L+ P + I A +
Sbjct: 67 GHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMT-----DPGVGVIVTIVALICT 121
Query: 122 LALWIYCKSSGNKI----VRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAV 177
+ L + + + VRA + DV+ N L+A L + D A+ + +
Sbjct: 122 IILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGI 181
Query: 178 YTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVD 237
Y + + E SL+ ++ P E Q++ +V P V +R G F+++
Sbjct: 182 YILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIH 241
Query: 238 IELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274
+E+ + LPL +AH + + ++ I + +H D
Sbjct: 242 LEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 278
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 70.5 bits (173), Expect = 1e-15
Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 198 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQ 257
++ + ++ R P V VR G YF+E+DIE+ ++ +K+AH + ++
Sbjct: 6 RTELDMYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIR 65
Query: 258 NKI-EKLPEVERAFVHLDYECDHKPEH 283
++ ++ ++E +H++ + + E
Sbjct: 66 KEMLKRRDDIEDVTIHVEPLGNVEEEG 92
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 63.1 bits (154), Expect = 4e-13
Identities = 16/92 (17%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 194 LVGQSAPPEILQKLTYLVIRH--PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHA 251
L+ + PPE ++++ + + ++ G F+E + + + P++EAH
Sbjct: 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHR 61
Query: 252 IGESLQNKIEKLPEVERAFVHLDYECDHKPEH 283
+ + L+ + + +A +H++ E + K +
Sbjct: 62 LCDELERALAQAFPGLQATIHVEPEGERKRTN 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 53/323 (16%), Positives = 98/323 (30%), Gaps = 120/323 (37%)
Query: 15 KIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIF 74
+ + + I +A TL L+ FT
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-------------------------- 211
Query: 75 AAIMATLGFQVL--IEAVEKLVKDEPPKKMNTVQLEWLYSI-----MIGATVVKLALW-I 126
G +L +E + P K ++L SI +IG V++LA + +
Sbjct: 212 -------GLNILEWLENPS----NTPDK-------DYLLSIPISCPLIG--VIQLAHYVV 251
Query: 127 YCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVL------GDSFY----------WWIDPA 170
K G + + + GLV AV +SF+ ++I
Sbjct: 252 TAKLLG--FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI--- 306
Query: 171 GAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTY-LVIR---HPEV-KRIDTVRA 225
G Y T+ +++E+++ + P + L I +V ++ +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLE-NNEGVP-------SPMLSISNLTQEQVQDYVNKTNS 358
Query: 226 YTFG------VLY-----FVEVDIEL---PEEL-----PLKEAHAIGESLQNKI---EKL 263
+ L V + P+ L L++A A Q++I E+
Sbjct: 359 HLPAGKQVEISLVNGAKNLV-----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 264 PEVERAFVHLDYECDHKPEHTVL 286
+ F L P H+ L
Sbjct: 414 LKFSNRF--LPVAS---PFHSHL 431
Score = 34.3 bits (78), Expect = 0.059
Identities = 42/278 (15%), Positives = 85/278 (30%), Gaps = 101/278 (36%)
Query: 3 ISNYANIVLLACKI-------FATIKSG----------SIAIAAS-TLDSLLDLMAGGIL 44
+++Y ++ K+ + G ++AIA + + +S + I
Sbjct: 246 LAHY----VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 45 WFTHVAMKNINIYKYPIGKLRVQ---PVGIIIFAAI-------------MAT---LGFQV 85
IG +R P + + + M + L +
Sbjct: 302 VLFF------------IG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 86 LIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGAT--VV--------KLALWI--YCKSSG- 132
+ + V K P K V++ S++ GA VV L L + SG
Sbjct: 349 VQDYVNKTNSHLPAGK--QVEI----SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 133 --NKIV---RAYAKDHYFDVVT---------NVVGLVAA-VLGDSFYWWIDPAGAILLAV 177
++I R + F V L+ ++ ++ + A I + V
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN---AKDIQIPV 459
Query: 178 YTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHP 215
Y + S+ + I +++ +IR P
Sbjct: 460 YDTFDGSDL----------RVLSGSISERIVDCIIRLP 487
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 3e-05
Identities = 57/314 (18%), Positives = 96/314 (30%), Gaps = 102/314 (32%)
Query: 1 MKISNYAN--IVL-------------LACKIFATIKSGSIA---IAASTLDSLLDLMAGG 42
+K Y N +VL L+CKI T + + AA+T LD +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 43 ILWFTHVAMKNI--NIYKYPIGKLRVQ-----PVGIIIFAAIMATLGFQVLIEAVEKLVK 95
T +K++ L + P + I A ++
Sbjct: 298 ---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE----------------SIR 338
Query: 96 DEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLV 155
D T W + KL I +SS N + A + + +
Sbjct: 339 DGL----ATWD-NWKHV-----NCDKLTTII--ESSLNVLEPAEYRKMFDRL-------- 378
Query: 156 AAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTY--LVIR 213
+V S I P LL++ W + + + ++ KL LV +
Sbjct: 379 -SVFPPSA--HI-PTI--LLSLI----WFDVIKSD---------VMVVVNKLHKYSLVEK 419
Query: 214 HPEVKRIDTVRAYTFGV--LYFVEVDIELPEELPLKEAHA-IGESLQNKIEKLPEVERAF 270
P+ T + +Y E+ ++L E L H I + N + +
Sbjct: 420 QPK--------ESTISIPSIYL-ELKVKLENEYAL---HRSIVDHY-NIPKTFDSDDLIP 466
Query: 271 VHLD-YECDHKPEH 283
+LD Y H H
Sbjct: 467 PYLDQYFYSHIGHH 480
Score = 42.5 bits (99), Expect = 1e-04
Identities = 35/326 (10%), Positives = 84/326 (25%), Gaps = 98/326 (30%)
Query: 22 SGSIAIAASTLDS--LLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMA 79
SG +A S + M I W + P ++ ++
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLN-------------LKNCN-SPETVLE---MLQ 203
Query: 80 TLGFQVLIEAVEKL-VKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS-------S 131
L +Q+ + +++++Q L + L Y
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRL--------LKSKPYENCLLVLLNVQ 254
Query: 132 GNKIVRAYAKDHYFD------VVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSE 185
K A F+ + T + + + + T +
Sbjct: 255 NAKAWNA------FNLSCKILLTTRFKQVTDFLSAATTT---HISLDHHSMTLTPDE-VK 304
Query: 186 TVMENAVSLVGQSAPPEILQKLTYLVI-----------------RHPEVKRIDTVRAYTF 228
+++ + Q P E+L + +H ++ T+ +
Sbjct: 305 SLLLKYLDCRPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 229 GVL-------YFVEV-----DIELPE--------ELPLKEAHAIGESLQNK--IEKLPEV 266
VL F + +P ++ + + L +EK P+
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 267 ERAFVH---LDY--ECDHKPE-HTVL 286
+ L+ + +++ H +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSI 449
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 29.5 bits (67), Expect = 1.2
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 15/58 (25%)
Query: 211 VIRHPEVKRID-----TVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKL 263
VI K I+ + +G L ++ I+ PE + ++KL
Sbjct: 200 VIAPGMRKVIEGKGMPIPKYGGYGNLI-IKFTIKDPENHFTS---------EENLKKL 247
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 26.4 bits (59), Expect = 9.0
Identities = 8/16 (50%), Positives = 9/16 (56%), Gaps = 2/16 (12%)
Query: 211 VIRHPEVKRIDTVRAY 226
V+RH V I V AY
Sbjct: 194 VVRHQLVGHI--VDAY 207
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 26.7 bits (60), Expect = 9.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 241 PEELPLKEAHAIGESLQ-NKIEKLPEVERAF 270
P + LKEA+ I LQ +K KLP V
Sbjct: 189 PAGVTLKEANEI---LQRSKKGKLPIVNDCD 216
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.408
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,645,010
Number of extensions: 289135
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 25
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)