BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022610
         (294 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KP9|A Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide
           Reductase
          Length = 291

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 92/224 (41%), Gaps = 38/224 (16%)

Query: 69  IGGVGFLETTYLSYLKLTNSDA-FCPIGGASCGDVLNSDYAVVFGVP------LPFIGMF 121
           + G+G L T YL+Y KLT   A FC  G      VL+S +A   G+P      L F+G+ 
Sbjct: 26  LAGLGSLLTAYLTYTKLTEQPAAFC-TGDGGSDLVLSSRWAEFLGIPTAAVGLLGFLGVL 84

Query: 122 AYXXXXXXXXXXXRKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYC 181
           A            R  +P           L G  ++M A   Y LY++        C YC
Sbjct: 85  ALAVLPDGLPLVKRWRWPA----------LFGLVSAMTAFEMYMLYLMVAVLR-QFCMYC 133

Query: 182 XXXXXXXXXXXXXXXXXXXVEEIQKVLGVQLCIASLVVAALSTSYSSIQPLSSSVAEANL 241
                              V   + + G +L  + ++VA L T  ++I   ++ V     
Sbjct: 134 TTAIILVAGLGLVT-----VLGHRWLDGGKLAFSYILVAFL-TLVTTIGVYANQVP---- 183

Query: 242 PFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQV 285
                      SP A+ LA HL  IG  MYGA+WC HC +QK++
Sbjct: 184 ---------PPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKEL 218


>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From
           Synechococcus Sp
          Length = 106

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 24/34 (70%)

Query: 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVL 286
           SP A+ LA HL  IG  MYGA+WC HC +QK++ 
Sbjct: 1   SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELF 34


>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella
           Fastidiosa Temecula1
          Length = 133

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 240 NLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSL 290
           NLP+ E     +    AL+  K  H     ++GA WC+ C    + L +SL
Sbjct: 5   NLPYDEHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDC----RALDKSL 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,706,421
Number of Sequences: 62578
Number of extensions: 167628
Number of successful extensions: 400
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 5
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)