BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022610
         (294 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A6H5Y1|MPP9_MOUSE M-phase phosphoprotein 9 OS=Mus musculus GN=Mphosph9 PE=2 SV=1
          Length = 991

 Score = 35.0 bits (79), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 25  RLSVLPVKCLSSRQSRDSDSDSDLRTTPSPSSTSGFSPY 63
           R+S  P   L    SR SD+DS  + + +PS  SGFS Y
Sbjct: 279 RISFSPDSVLEPSLSRHSDTDSSSQASHNPSQVSGFSKY 317


>sp|O75448|MED24_HUMAN Mediator of RNA polymerase II transcription subunit 24 OS=Homo
           sapiens GN=MED24 PE=1 SV=1
          Length = 989

 Score = 35.0 bits (79), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 183 TSALLSFSLFFISLKEFSV---EEIQKVLGVQLC---IASLVVAALSTSYSSIQPLSSSV 236
           T  L SF+  FI+L EF+    EE  K   V+     I+ L++  ++ +Y S   LS S 
Sbjct: 458 TGKLKSFARKFINLNEFTTYGSEESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESR 517

Query: 237 AEANLPFFETEITT 250
             A +PFFET + T
Sbjct: 518 TGAEVPFFETWMQT 531


>sp|Q8NFJ6|PKR2_HUMAN Prokineticin receptor 2 OS=Homo sapiens GN=PROKR2 PE=1 SV=1
          Length = 384

 Score = 31.2 bits (69), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 162 SAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEEIQKVL 208
            +YFL+I    F G   +  L  A +S  L+F ++  F  E+I+K L
Sbjct: 221 KSYFLFIFGVEFVGPVVTMTLCYARISRELWFKAVPGFQTEQIRKRL 267


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,021,396
Number of Sequences: 539616
Number of extensions: 3865926
Number of successful extensions: 10639
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 10629
Number of HSP's gapped (non-prelim): 30
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)