Query 022610
Match_columns 294
No_of_seqs 207 out of 460
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00756 VKc Family of likel 100.0 4.6E-29 9.9E-34 212.4 14.5 130 63-198 5-141 (142)
2 PRK14889 VKOR family protein; 99.9 6.3E-27 1.4E-31 200.2 13.4 129 63-198 8-140 (143)
3 PF07884 VKOR: Vitamin K epoxi 99.9 4.5E-25 9.8E-30 185.4 12.4 128 65-198 4-137 (137)
4 COG4243 Predicted membrane pro 99.9 9.6E-25 2.1E-29 188.7 12.8 137 59-201 7-150 (156)
5 TIGR02196 GlrX_YruB Glutaredox 95.9 0.0052 1.1E-07 43.9 2.3 22 268-289 2-23 (74)
6 cd02976 NrdH NrdH-redoxin (Nrd 95.2 0.014 3.1E-07 41.6 2.3 21 268-288 2-22 (73)
7 TIGR02200 GlrX_actino Glutared 94.7 0.022 4.7E-07 41.6 2.3 22 268-289 2-23 (77)
8 PF13899 Thioredoxin_7: Thiore 94.7 0.031 6.8E-07 42.5 3.2 34 254-287 7-40 (82)
9 TIGR02189 GlrX-like_plant Glut 94.5 0.029 6.4E-07 44.9 2.7 29 261-289 3-31 (99)
10 PHA03050 glutaredoxin; Provisi 94.5 0.043 9.3E-07 44.9 3.6 32 258-289 5-36 (108)
11 cd02959 ERp19 Endoplasmic reti 94.1 0.056 1.2E-06 44.4 3.5 36 254-289 9-44 (117)
12 PRK00293 dipZ thiol:disulfide 94.0 1.6 3.4E-05 45.4 14.6 23 265-287 475-498 (571)
13 PHA02125 thioredoxin-like prot 93.9 0.043 9.3E-07 41.3 2.3 21 268-288 2-22 (75)
14 cd02973 TRX_GRX_like Thioredox 93.7 0.05 1.1E-06 39.3 2.3 21 268-288 3-23 (67)
15 cd02947 TRX_family TRX family; 93.7 0.056 1.2E-06 39.3 2.5 25 265-289 11-35 (93)
16 PF00462 Glutaredoxin: Glutare 93.5 0.059 1.3E-06 38.4 2.4 21 268-288 1-21 (60)
17 cd02993 PDI_a_APS_reductase PD 93.4 0.083 1.8E-06 42.1 3.3 26 265-290 22-47 (109)
18 cd02951 SoxW SoxW family; SoxW 93.3 0.084 1.8E-06 42.7 3.2 20 267-286 17-36 (125)
19 cd02998 PDI_a_ERp38 PDIa famil 93.2 0.062 1.3E-06 41.1 2.2 23 268-290 22-44 (105)
20 TIGR01295 PedC_BrcD bacterioci 93.1 0.062 1.3E-06 44.6 2.2 33 258-290 15-49 (122)
21 TIGR00411 redox_disulf_1 small 93.1 0.063 1.4E-06 39.7 2.0 21 268-288 3-23 (82)
22 cd02066 GRX_family Glutaredoxi 93.0 0.078 1.7E-06 37.4 2.4 22 268-289 2-23 (72)
23 TIGR02190 GlrX-dom Glutaredoxi 92.9 0.084 1.8E-06 40.1 2.5 24 265-288 7-30 (79)
24 cd02975 PfPDO_like_N Pyrococcu 92.8 0.11 2.3E-06 42.3 3.1 32 259-290 15-48 (113)
25 TIGR02181 GRX_bact Glutaredoxi 92.7 0.09 1.9E-06 39.3 2.4 22 268-289 1-22 (79)
26 cd03419 GRX_GRXh_1_2_like Glut 92.5 0.094 2E-06 38.9 2.3 22 268-289 2-23 (82)
27 cd02948 TRX_NDPK TRX domain, T 92.2 0.18 3.9E-06 39.8 3.6 32 258-289 9-42 (102)
28 cd03029 GRX_hybridPRX5 Glutare 92.1 0.11 2.5E-06 38.2 2.3 22 268-289 3-24 (72)
29 PRK00611 putative disulfide ox 92.0 1.1 2.3E-05 38.6 8.5 60 67-132 69-130 (135)
30 cd01659 TRX_superfamily Thiore 91.8 0.13 2.8E-06 33.5 2.1 21 269-289 2-22 (69)
31 cd02953 DsbDgamma DsbD gamma f 91.7 0.14 3.1E-06 40.0 2.5 28 259-286 4-33 (104)
32 PF00085 Thioredoxin: Thioredo 91.5 0.15 3.3E-06 38.6 2.5 26 265-290 18-43 (103)
33 cd03005 PDI_a_ERp46 PDIa famil 91.3 0.12 2.6E-06 39.5 1.7 24 267-290 19-42 (102)
34 cd03418 GRX_GRXb_1_3_like Glut 91.2 0.17 3.6E-06 37.1 2.3 22 268-289 2-23 (75)
35 PRK11200 grxA glutaredoxin 1; 91.1 0.15 3.2E-06 39.0 2.0 21 268-288 3-23 (85)
36 PRK10638 glutaredoxin 3; Provi 90.7 0.19 4.2E-06 38.3 2.3 23 267-289 3-25 (83)
37 PRK03113 putative disulfide ox 90.6 1.5 3.2E-05 37.9 7.9 64 64-132 67-134 (139)
38 TIGR00365 monothiol glutaredox 90.6 0.3 6.5E-06 38.9 3.4 32 257-288 3-39 (97)
39 cd03003 PDI_a_ERdj5_N PDIa fam 90.4 0.2 4.3E-06 38.9 2.2 32 259-290 11-44 (101)
40 cd02956 ybbN ybbN protein fami 90.3 0.24 5.1E-06 37.9 2.6 21 268-288 16-36 (96)
41 cd02996 PDI_a_ERp44 PDIa famil 89.9 0.34 7.4E-06 38.1 3.2 33 258-290 10-44 (108)
42 cd03027 GRX_DEP Glutaredoxin ( 89.5 0.27 5.9E-06 36.4 2.3 21 268-288 3-23 (73)
43 cd03001 PDI_a_P5 PDIa family, 89.5 0.25 5.3E-06 37.9 2.1 21 268-288 22-42 (103)
44 TIGR02194 GlrX_NrdH Glutaredox 89.5 0.29 6.4E-06 36.2 2.4 21 268-288 1-21 (72)
45 cd02960 AGR Anterior Gradient 89.2 0.37 8.1E-06 41.1 3.2 37 252-288 11-48 (130)
46 PTZ00051 thioredoxin; Provisio 89.2 0.43 9.4E-06 36.4 3.3 32 258-289 10-43 (98)
47 TIGR00412 redox_disulf_2 small 89.2 0.3 6.5E-06 36.9 2.3 22 268-290 3-24 (76)
48 cd02994 PDI_a_TMX PDIa family, 89.1 0.38 8.3E-06 37.1 2.9 30 261-290 13-42 (101)
49 PRK10329 glutaredoxin-like pro 89.1 0.3 6.6E-06 37.7 2.3 22 268-289 3-24 (81)
50 cd02999 PDI_a_ERp44_like PDIa 89.0 0.28 6.1E-06 38.9 2.1 23 268-290 22-44 (100)
51 cd03004 PDI_a_ERdj5_C PDIa fam 88.7 0.46 9.9E-06 36.9 3.1 24 267-290 22-45 (104)
52 cd03006 PDI_a_EFP1_N PDIa fami 88.7 0.32 7E-06 40.0 2.3 27 265-291 30-56 (113)
53 cd02950 TxlA TRX-like protein 88.4 0.36 7.8E-06 40.8 2.5 30 260-289 16-45 (142)
54 cd03002 PDI_a_MPD1_like PDI fa 87.7 0.41 9E-06 37.2 2.3 23 268-290 22-44 (109)
55 cd03000 PDI_a_TMX3 PDIa family 87.0 0.37 8E-06 37.8 1.6 24 265-288 16-39 (104)
56 cd02949 TRX_NTR TRX domain, no 86.9 0.71 1.5E-05 35.7 3.2 31 258-288 4-37 (97)
57 cd02955 SSP411 TRX domain, SSP 86.7 0.57 1.2E-05 39.3 2.7 36 253-288 4-40 (124)
58 cd02966 TlpA_like_family TlpA- 86.5 0.34 7.3E-06 36.4 1.2 32 257-288 12-43 (116)
59 cd02964 TryX_like_family Trypa 86.4 0.49 1.1E-05 38.7 2.1 34 255-288 8-41 (132)
60 cd02997 PDI_a_PDIR PDIa family 86.2 0.77 1.7E-05 35.1 3.1 24 266-289 19-42 (104)
61 cd02985 TRX_CDSP32 TRX family, 86.1 0.59 1.3E-05 36.9 2.4 32 258-289 5-40 (103)
62 cd02962 TMX2 TMX2 family; comp 85.4 0.97 2.1E-05 39.2 3.6 33 258-290 37-73 (152)
63 PHA02278 thioredoxin-like prot 85.1 1.1 2.5E-05 36.1 3.6 33 257-289 5-39 (103)
64 cd02963 TRX_DnaJ TRX domain, D 85.1 0.62 1.3E-05 37.4 2.1 24 265-288 25-48 (111)
65 cd03009 TryX_like_TryX_NRX Try 84.9 0.65 1.4E-05 37.6 2.2 33 256-288 10-42 (131)
66 cd02995 PDI_a_PDI_a'_C PDIa fa 84.3 0.75 1.6E-05 35.0 2.2 23 268-290 22-44 (104)
67 cd02954 DIM1 Dim1 family; Dim1 83.5 0.89 1.9E-05 37.9 2.4 24 267-290 17-40 (114)
68 cd02992 PDI_a_QSOX PDIa family 83.3 0.82 1.8E-05 37.0 2.1 32 258-289 10-44 (114)
69 cd02961 PDI_a_family Protein D 83.0 1.5 3.2E-05 32.4 3.3 33 258-290 7-41 (101)
70 PRK15412 thiol:disulfide inter 82.5 6 0.00013 34.6 7.4 25 264-288 68-92 (185)
71 KOG1752 Glutaredoxin and relat 82.5 1.1 2.3E-05 36.9 2.5 30 259-288 7-36 (104)
72 cd03011 TlpA_like_ScsD_MtbDsbE 82.4 0.65 1.4E-05 36.9 1.2 33 256-288 12-44 (123)
73 cd03028 GRX_PICOT_like Glutare 81.8 1.1 2.4E-05 34.8 2.3 29 261-289 3-36 (90)
74 TIGR01126 pdi_dom protein disu 81.7 0.86 1.9E-05 34.5 1.6 21 268-288 17-37 (102)
75 COG0695 GrxC Glutaredoxin and 81.5 1 2.3E-05 34.7 2.0 22 268-289 3-24 (80)
76 cd02984 TRX_PICOT TRX domain, 81.4 1.2 2.5E-05 33.9 2.2 23 268-290 18-40 (97)
77 PRK09381 trxA thioredoxin; Pro 80.1 1.3 2.8E-05 34.7 2.2 25 265-289 22-46 (109)
78 PRK03147 thiol-disulfide oxido 79.8 2.8 6E-05 35.3 4.2 34 256-289 53-86 (173)
79 COG4232 Thiol:disulfide interc 79.7 20 0.00044 37.7 11.1 32 256-287 466-498 (569)
80 TIGR02740 TraF-like TraF-like 79.6 1.7 3.7E-05 41.0 3.1 32 257-288 159-190 (271)
81 cd03010 TlpA_like_DsbE TlpA-li 79.3 1.4 3.1E-05 35.3 2.2 33 256-288 17-49 (127)
82 PTZ00443 Thioredoxin domain-co 79.2 1.4 3.1E-05 40.6 2.4 22 268-289 56-77 (224)
83 TIGR02187 GlrX_arch Glutaredox 78.7 1.9 4.2E-05 38.6 3.0 27 264-290 133-159 (215)
84 cd02989 Phd_like_TxnDC9 Phosdu 77.8 1.8 3.8E-05 35.2 2.3 32 258-289 14-47 (113)
85 COG0526 TrxA Thiol-disulfide i 77.7 1.2 2.7E-05 32.4 1.3 19 272-290 40-58 (127)
86 TIGR02738 TrbB type-F conjugat 77.5 1.7 3.7E-05 37.7 2.3 26 263-288 49-74 (153)
87 cd02967 mauD Methylamine utili 77.5 1.1 2.4E-05 35.0 1.0 32 257-288 13-45 (114)
88 PF08534 Redoxin: Redoxin; In 77.0 2 4.2E-05 35.3 2.4 35 254-288 18-53 (146)
89 PRK01749 disulfide bond format 76.6 19 0.0004 32.0 8.6 57 70-130 82-158 (176)
90 cd03026 AhpF_NTD_C TRX-GRX-lik 76.3 3.1 6.8E-05 32.6 3.3 33 258-290 5-38 (89)
91 TIGR01068 thioredoxin thioredo 75.9 2.4 5.2E-05 31.7 2.5 31 258-288 5-38 (101)
92 PTZ00102 disulphide isomerase; 75.7 1.8 4E-05 42.5 2.2 22 268-289 379-400 (477)
93 cd02957 Phd_like Phosducin (Ph 75.4 2.3 4.9E-05 34.0 2.3 33 258-290 13-50 (113)
94 TIGR00385 dsbE periplasmic pro 74.3 2.7 5.9E-05 36.2 2.7 24 265-288 64-87 (173)
95 PRK10996 thioredoxin 2; Provis 74.3 2.4 5.2E-05 35.6 2.3 32 258-289 44-77 (139)
96 cd02970 PRX_like2 Peroxiredoxi 73.2 2.7 5.9E-05 34.0 2.3 33 256-288 14-48 (149)
97 cd02965 HyaE HyaE family; HyaE 73.0 2.4 5.3E-05 35.2 2.0 24 268-291 31-56 (111)
98 PLN00410 U5 snRNP protein, DIM 72.3 2.9 6.3E-05 36.2 2.4 35 256-290 11-49 (142)
99 cd02986 DLP Dim1 family, Dim1- 71.6 3.1 6.8E-05 34.9 2.3 24 268-291 18-41 (114)
100 cd02952 TRP14_like Human TRX-r 71.6 4.3 9.3E-05 33.9 3.2 31 258-288 11-52 (119)
101 PTZ00102 disulphide isomerase; 71.2 7.2 0.00016 38.3 5.2 25 265-289 50-74 (477)
102 cd03060 GST_N_Omega_like GST_N 70.4 3.6 7.9E-05 29.9 2.2 20 269-288 2-21 (71)
103 PRK10824 glutaredoxin-4; Provi 70.1 5.6 0.00012 33.2 3.5 33 257-289 6-43 (115)
104 PRK02935 hypothetical protein; 69.7 3.3 7.2E-05 34.5 2.1 14 275-288 72-85 (110)
105 cd03020 DsbA_DsbC_DsbG DsbA fa 69.6 3.1 6.7E-05 36.6 2.0 22 267-288 80-101 (197)
106 TIGR01598 holin_phiLC3 holin, 69.5 22 0.00048 28.0 6.5 38 194-232 28-65 (78)
107 PLN02309 5'-adenylylsulfate re 69.5 4.7 0.0001 41.2 3.5 27 264-290 365-391 (457)
108 PF11023 DUF2614: Protein of u 69.4 4 8.7E-05 34.4 2.5 14 276-289 72-85 (114)
109 PF10609 ParA: ParA/MinD ATPas 67.6 0.74 1.6E-05 36.4 -2.1 30 260-289 46-81 (81)
110 PF00578 AhpC-TSA: AhpC/TSA fa 67.0 4.5 9.7E-05 31.8 2.3 33 256-288 17-50 (124)
111 TIGR00424 APS_reduc 5'-adenyly 66.9 4 8.6E-05 41.7 2.4 26 266-291 373-398 (463)
112 PF07098 DUF1360: Protein of u 65.3 17 0.00038 30.0 5.4 21 177-197 59-79 (105)
113 PRK10954 periplasmic protein d 64.7 3 6.4E-05 37.2 0.9 22 265-286 38-59 (207)
114 PRK02110 disulfide bond format 63.5 45 0.00099 29.4 8.1 58 70-132 81-159 (169)
115 PRK04388 disulfide bond format 63.5 43 0.00092 29.5 8.0 61 68-132 78-160 (172)
116 PRK01103 formamidopyrimidine/5 63.5 1.9 4.1E-05 40.6 -0.6 12 271-282 263-274 (274)
117 cd03037 GST_N_GRX2 GST_N famil 61.8 6.4 0.00014 28.5 2.1 21 268-288 1-21 (71)
118 cd03018 PRX_AhpE_like Peroxire 61.6 6.2 0.00013 32.3 2.2 34 255-288 18-53 (149)
119 KOG0190 Protein disulfide isom 60.1 4.2 9.2E-05 41.9 1.1 17 269-285 389-405 (493)
120 KOG2501 Thioredoxin, nucleored 60.0 4 8.6E-05 36.2 0.8 25 264-288 33-61 (157)
121 PF06827 zf-FPG_IleRS: Zinc fi 59.4 1.3 2.9E-05 28.0 -1.7 19 263-281 11-29 (30)
122 TIGR03145 cyt_nit_nrfE cytochr 59.3 2.5E+02 0.0055 30.1 14.1 56 97-153 158-214 (628)
123 COG0266 Nei Formamidopyrimidin 58.4 2.7 6E-05 40.2 -0.5 11 271-281 263-273 (273)
124 cd03012 TlpA_like_DipZ_like Tl 58.2 7 0.00015 31.5 1.9 30 257-286 16-45 (126)
125 TIGR01130 ER_PDI_fam protein d 58.0 7.2 0.00016 37.7 2.3 21 268-288 368-388 (462)
126 cd03014 PRX_Atyp2cys Peroxired 56.4 8.2 0.00018 31.5 2.1 34 256-289 18-52 (143)
127 smart00594 UAS UAS domain. 55.3 15 0.00032 30.0 3.5 46 244-289 7-53 (122)
128 PRK13728 conjugal transfer pro 55.2 8.9 0.00019 34.5 2.2 28 256-287 65-92 (181)
129 cd03008 TryX_like_RdCVF Trypar 54.1 10 0.00022 32.8 2.3 30 258-287 19-48 (146)
130 cd03051 GST_N_GTT2_like GST_N 54.1 11 0.00024 26.7 2.3 21 268-288 1-21 (74)
131 PTZ00062 glutaredoxin; Provisi 53.4 16 0.00034 33.3 3.6 35 255-289 102-141 (204)
132 TIGR02661 MauD methylamine deh 52.6 10 0.00023 33.3 2.3 23 266-288 76-98 (189)
133 COG1138 CcmF Cytochrome c biog 52.3 94 0.002 33.4 9.4 65 67-132 124-192 (648)
134 cd00340 GSH_Peroxidase Glutath 51.9 11 0.00023 31.6 2.2 32 256-288 14-45 (152)
135 cd00570 GST_N_family Glutathio 47.8 15 0.00033 24.8 2.0 20 269-288 2-21 (71)
136 cd03017 PRX_BCP Peroxiredoxin 47.3 14 0.0003 29.8 2.0 32 257-288 16-48 (140)
137 cd03041 GST_N_2GST_N GST_N fam 45.7 18 0.00038 26.8 2.2 21 268-288 2-22 (77)
138 PRK09437 bcp thioredoxin-depen 45.3 15 0.00033 30.5 2.0 33 256-288 22-55 (154)
139 PRK13945 formamidopyrimidine-D 45.3 6.1 0.00013 37.4 -0.4 11 271-281 272-282 (282)
140 cd03015 PRX_Typ2cys Peroxiredo 43.2 17 0.00038 31.0 2.1 34 255-288 20-54 (173)
141 cd03040 GST_N_mPGES2 GST_N fam 42.8 22 0.00048 25.9 2.4 21 268-288 2-22 (77)
142 cd02958 UAS UAS family; UAS is 42.6 25 0.00055 27.9 2.9 36 254-289 7-43 (114)
143 PRK14810 formamidopyrimidine-D 42.3 7.5 0.00016 36.7 -0.3 11 271-281 262-272 (272)
144 PF13192 Thioredoxin_3: Thiore 41.1 24 0.00053 26.3 2.4 21 269-290 4-24 (76)
145 TIGR00353 nrfE c-type cytochro 40.7 4.7E+02 0.01 27.7 13.7 35 97-132 106-140 (576)
146 PF04531 Phage_holin_1: Bacter 40.4 94 0.002 24.5 5.7 24 210-233 46-69 (84)
147 PRK14811 formamidopyrimidine-D 39.7 8.9 0.00019 36.2 -0.2 12 271-282 253-264 (269)
148 KOG0913 Thiol-disulfide isomer 39.5 8 0.00017 36.6 -0.6 24 261-284 36-59 (248)
149 PRK15317 alkyl hydroperoxide r 39.0 31 0.00068 35.0 3.5 41 253-293 104-145 (517)
150 COG1651 DsbG Protein-disulfide 38.9 19 0.0004 32.4 1.7 17 265-281 85-101 (244)
151 PF06781 UPF0233: Uncharacteri 38.8 73 0.0016 25.6 4.9 32 51-82 21-55 (87)
152 PRK10445 endonuclease VIII; Pr 38.2 9.6 0.00021 35.8 -0.3 11 271-281 253-263 (263)
153 COG1495 DsbB Disulfide bond fo 38.1 2.4E+02 0.0051 24.9 8.5 36 159-195 24-59 (170)
154 PRK01749 disulfide bond format 37.8 2.7E+02 0.0058 24.6 8.8 27 166-193 30-56 (176)
155 PF14595 Thioredoxin_9: Thiore 37.7 29 0.00062 29.2 2.6 42 252-293 29-70 (129)
156 cd02982 PDI_b'_family Protein 37.6 26 0.00056 26.6 2.1 25 267-291 15-39 (103)
157 TIGR00577 fpg formamidopyrimid 37.3 10 0.00022 35.8 -0.3 10 271-280 263-272 (272)
158 cd02987 Phd_like_Phd Phosducin 37.3 42 0.00091 29.5 3.6 23 268-290 87-109 (175)
159 cd03059 GST_N_SspA GST_N famil 36.9 31 0.00068 24.5 2.4 21 268-288 1-21 (73)
160 PRK02110 disulfide bond format 36.6 2.3E+02 0.0049 25.0 8.1 27 166-193 30-56 (169)
161 PRK04388 disulfide bond format 35.4 2.4E+02 0.0053 24.7 8.2 30 166-196 27-56 (172)
162 cd02971 PRX_family Peroxiredox 35.3 28 0.0006 27.9 2.1 32 257-288 15-47 (140)
163 PRK14018 trifunctional thiored 34.5 57 0.0012 34.0 4.6 24 265-288 57-80 (521)
164 PF06110 DUF953: Eukaryotic pr 34.1 29 0.00062 29.2 2.0 14 272-285 34-47 (119)
165 PRK06265 cobalt transport prot 34.0 74 0.0016 28.6 4.8 26 181-206 13-38 (199)
166 PRK11657 dsbG disulfide isomer 32.7 27 0.00058 32.5 1.7 18 269-286 122-139 (251)
167 KOG0191 Thioredoxin/protein di 32.7 28 0.0006 33.9 1.9 32 257-288 40-71 (383)
168 PF03190 Thioredox_DsbH: Prote 32.4 46 0.001 29.6 3.1 37 253-289 26-63 (163)
169 KOG1731 FAD-dependent sulfhydr 31.9 33 0.00071 36.3 2.4 22 269-290 62-83 (606)
170 PRK10369 heme lyase subunit Nr 30.7 6.8E+02 0.015 26.6 13.9 70 97-168 160-233 (571)
171 COG4545 Glutaredoxin-related p 29.2 42 0.0009 26.8 2.0 20 269-288 5-24 (85)
172 PRK00522 tpx lipid hydroperoxi 29.1 39 0.00084 29.0 2.0 34 256-289 36-70 (167)
173 PLN02919 haloacid dehalogenase 28.4 47 0.001 37.3 3.0 33 256-288 411-444 (1057)
174 cd03065 PDI_b_Calsequestrin_N 28.2 31 0.00068 28.7 1.3 24 257-280 17-45 (120)
175 cd02968 SCO SCO (an acronym fo 28.1 50 0.0011 26.5 2.4 32 257-288 15-47 (142)
176 PRK04307 putative disulfide ox 27.9 3.4E+02 0.0075 25.2 8.1 30 166-196 42-71 (218)
177 KOG0191 Thioredoxin/protein di 27.0 34 0.00073 33.4 1.4 23 268-290 166-188 (383)
178 COG3118 Thioredoxin domain-con 26.8 44 0.00096 32.6 2.1 38 251-288 29-67 (304)
179 PRK10877 protein disulfide iso 26.8 47 0.001 30.5 2.3 19 269-287 112-130 (232)
180 TIGR03140 AhpF alkyl hydropero 26.4 67 0.0015 32.6 3.5 41 253-293 105-146 (515)
181 PF14673 DUF4459: Domain of un 26.1 25 0.00053 30.0 0.3 11 268-278 93-103 (159)
182 KOG3425 Uncharacterized conser 25.6 41 0.00088 29.0 1.5 22 267-288 29-57 (128)
183 cd03045 GST_N_Delta_Epsilon GS 25.6 55 0.0012 23.4 2.0 20 268-287 1-20 (74)
184 PLN02412 probable glutathione 25.4 49 0.0011 28.4 2.0 31 256-286 21-51 (167)
185 PRK00159 putative septation in 24.8 2.2E+02 0.0048 23.0 5.4 26 56-81 26-54 (87)
186 PF05297 Herpes_LMP1: Herpesvi 24.2 25 0.00055 34.4 0.0 15 165-180 66-80 (381)
187 TIGR02540 gpx7 putative glutat 24.2 53 0.0012 27.4 2.0 29 256-284 14-42 (153)
188 PF13728 TraF: F plasmid trans 23.4 81 0.0018 28.7 3.1 30 258-287 114-143 (215)
189 PF06053 DUF929: Domain of unk 21.8 44 0.00095 31.7 1.1 20 264-283 58-77 (249)
190 TIGR03137 AhpC peroxiredoxin. 21.8 62 0.0013 28.3 1.9 31 257-287 24-55 (187)
191 KOG3022 Predicted ATPase, nucl 21.5 26 0.00056 34.1 -0.5 37 252-288 189-237 (300)
192 TIGR03143 AhpF_homolog putativ 21.1 97 0.0021 31.9 3.5 41 253-293 464-505 (555)
193 KOG0190 Protein disulfide isom 21.1 41 0.0009 34.9 0.8 28 264-291 42-69 (493)
194 KOG0907 Thioredoxin [Posttrans 20.3 83 0.0018 25.6 2.3 24 268-291 25-48 (106)
No 1
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=99.96 E-value=4.6e-29 Score=212.39 Aligned_cols=130 Identities=37% Similarity=0.542 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcC-----CCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-cc
Q 022610 63 YGWCAGIGGVGFLETTYLSYLKLTN-----SDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-AR 135 (294)
Q Consensus 63 ~~w~l~La~iGll~S~YLt~~kl~~-----~~~~C~i~~-~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~~-~~ 135 (294)
..++++++.+|+++|.||+++|++. +++.||+|+ .||++|++||||++||+||+++|+++|++++.+++.. .+
T Consensus 5 ~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~~~~~l~~~~~~~ 84 (142)
T smart00756 5 RWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYLVVLALAVLGLLG 84 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 3344778889999999999999753 348999998 8999999999999999999999999999999998873 44
Q ss_pred ccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhc
Q 022610 136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (294)
Q Consensus 136 ~~l~~~l~~~~~rw~ll~ls~~mav~s~yLlyil~~~vI~alC~yC~~S~~isi~Lf~ltl~~ 198 (294)
.+.++ +.| +.++.+++.+.+++.|++|++.++ ||++|+||+++|++++++|+++..+
T Consensus 85 ~~~~~----~~~-~~l~~~~~~~~~~s~yl~y~~~~v-i~~~C~~C~~~~~~~~~lf~~~~~~ 141 (142)
T smart00756 85 VTLPR----WTW-RLLFLGSLAGAVFSVYLIYLLVFV-IKALCLYCILSAVVSISLFILVTIG 141 (142)
T ss_pred ccchH----HHH-HHHHHHHHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHhc
Confidence 45442 222 355666788889999999999886 8999999999999999999988765
No 2
>PRK14889 VKOR family protein; Provisional
Probab=99.94 E-value=6.3e-27 Score=200.21 Aligned_cols=129 Identities=24% Similarity=0.395 Sum_probs=102.5
Q ss_pred hHHH-HHHHHHHHHHHHHHHHhH--hcCCCCCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHhccccC
Q 022610 63 YGWC-AGIGGVGFLETTYLSYLK--LTNSDAFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSF 138 (294)
Q Consensus 63 ~~w~-l~La~iGll~S~YLt~~k--l~~~~~~C~i~~-~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~~~~~~l 138 (294)
.++. ++++.+|+++|.|++++| .+++++.||+|+ +||++|++||||++||+||+++|+++|.+++.+++..... .
T Consensus 8 ~~~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~~~l~l~~~~~~~-~ 86 (143)
T PRK14889 8 ILYLLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFSANIALALLGVGT-L 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHHHHHHHHHHHHcc-h
Confidence 4444 677789999999999877 457889999998 8999999999999999999999999999999999874322 2
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhc
Q 022610 139 PIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (294)
Q Consensus 139 ~~~l~~~~~rw~ll~ls~~mav~s~yLlyil~~~vI~alC~yC~~S~~isi~Lf~ltl~~ 198 (294)
+++..+. .|.+ .....+++.|++|++.++ ||++|+||+++|++++++|++.+..
T Consensus 87 ~~~~~~~--~~~~---~~~g~~~~~yL~y~~~fv-i~a~C~~C~~~~~~~~~~~~~~~~~ 140 (143)
T PRK14889 87 KRILGRV--ISLW---SIIGLAIVPYLVYLEVFV-LGAICIYCTIAHVSILAAFILILIK 140 (143)
T ss_pred hHHHHHH--HHHH---HHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHHH
Confidence 2111111 1112 234467899999999886 8999999999999999999887654
No 3
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=99.92 E-value=4.5e-25 Score=185.41 Aligned_cols=128 Identities=34% Similarity=0.585 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCC----CCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHHHh-ccccC
Q 022610 65 WCAGIGGVGFLETTYLSYLKLTNSD----AFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKSF 138 (294)
Q Consensus 65 w~l~La~iGll~S~YLt~~kl~~~~----~~C~i~~-~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~~-~~~~l 138 (294)
+..+++++|+++|.||++++++..+ ..||+++ .||++|++||||++||+||+++|+++|..++.+++.. .+++.
T Consensus 4 ~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~~~l~~~~~~~~~~~~ 83 (137)
T PF07884_consen 4 LLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFAFLLLLALLGLARRRL 83 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHHHHHHHHHHHhhccch
Confidence 3477888999999999999986544 8999988 9999999999999999999999999999999988863 33333
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhc
Q 022610 139 PIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (294)
Q Consensus 139 ~~~l~~~~~rw~ll~ls~~mav~s~yLlyil~~~vI~alC~yC~~S~~isi~Lf~ltl~~ 198 (294)
++ ..|. .++..++.+.+++.|+.|++.++ +|++|+||+++|++++.++++++.+
T Consensus 84 ~~----~~~~-~l~~~~~~~~~~~~~l~~~~~~~-i~~~C~~Cl~~~~i~~~l~~l~~~~ 137 (137)
T PF07884_consen 84 SR----WLWL-LLFALSFIGLVFSLYLIYIQIFV-IKAWCPYCLVSYAINLALFILSLIR 137 (137)
T ss_dssp ST----THHH-HHHHHHHHHHHHHHHHHHHHHTT-S----HHHHHHHHHHHHHHHHHHS-
T ss_pred hH----HHHH-HHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 32 2222 44555667778899999999876 8999999999999999999988754
No 4
>COG4243 Predicted membrane protein [Function unknown]
Probab=99.92 E-value=9.6e-25 Score=188.73 Aligned_cols=137 Identities=28% Similarity=0.378 Sum_probs=108.2
Q ss_pred CCchhHHH-HHHHHHHHHHHHHHHHhH---hcCCC--CCCCCCC-CCccccccccchhccCCchhHHHHHHHHHHHHHHH
Q 022610 59 GFSPYGWC-AGIGGVGFLETTYLSYLK---LTNSD--AFCPIGG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGL 131 (294)
Q Consensus 59 ~~~~~~w~-l~La~iGll~S~YLt~~k---l~~~~--~~C~i~~-~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal 131 (294)
.|++++|. ..++.+|.+.+.-+++++ ++++. ..|+.|+ .||++|++||||++||+||+++|+++|+++.++++
T Consensus 7 ~p~~~~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft~~~i~al 86 (156)
T COG4243 7 APWILGWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFTAVLIAAL 86 (156)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHHHHHHHHH
Confidence 57889998 445556555555555555 55544 4567778 89999999999999999999999999999999998
Q ss_pred HhccccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhccch
Q 022610 132 LLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSV 201 (294)
Q Consensus 132 ~~~~~~l~~~l~~~~~rw~ll~ls~~mav~s~yLlyil~~~vI~alC~yC~~S~~isi~Lf~ltl~~~~~ 201 (294)
..-...+ ++++|+ .+...++.+.+|+.||+|++.+. +|++|+||+++|+.++.+|++...+++|
T Consensus 87 l~~~~~l----~~~~~~-~l~v~~~~g~~f~~yLiY~e~~~-~~alC~YCtv~h~~~l~~~vl~~~~~~~ 150 (156)
T COG4243 87 LGVAGVL----ERWTWI-GLLVGSLVGSAFVPYLIYLELFV-IGALCLYCTVAHLSILLLFVLATAGRRW 150 (156)
T ss_pred HHHHHhH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8533323 344444 44556678889999999988765 8999999999999999999999888877
No 5
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.94 E-value=0.0052 Score=43.91 Aligned_cols=22 Identities=32% Similarity=0.782 Sum_probs=19.4
Q ss_pred ceeeccccChhhHHHHHhHHhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.++|++.|||+|+++++.|.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~ 23 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK 23 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC
Confidence 4799999999999999998753
No 6
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.21 E-value=0.014 Score=41.62 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.0
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.++|++.|||+|++.++++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~ 22 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE 22 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH
Confidence 579999999999999999865
No 7
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=94.75 E-value=0.022 Score=41.58 Aligned_cols=22 Identities=27% Similarity=0.786 Sum_probs=19.5
Q ss_pred ceeeccccChhhHHHHHhHHhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.++|++.|||+|++-|+++.+-
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 5799999999999999998763
No 8
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=94.72 E-value=0.031 Score=42.46 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=28.4
Q ss_pred hhHHHHHHHhccccceeeccccChhhHHHHHhHH
Q 022610 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLH 287 (294)
Q Consensus 254 ~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg 287 (294)
.++.+.|+.=++.=.+++++.||++|+..++-+-
T Consensus 7 ~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~ 40 (82)
T PF13899_consen 7 EEALAEAKKEGKPVLVDFGADWCPPCKKLEREVF 40 (82)
T ss_dssp HHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHc
Confidence 3567777777888889999999999999988763
No 9
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.50 E-value=0.029 Score=44.93 Aligned_cols=29 Identities=14% Similarity=0.278 Sum_probs=24.4
Q ss_pred HHhccccceeeccccChhhHHHHHhHHhh
Q 022610 261 KHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 261 ~~L~~~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
+.+++.-.++|+..|||+|++-|++|-+.
T Consensus 3 ~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 3 RMVSEKAVVIFSRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred hhhccCCEEEEECCCCHHHHHHHHHHHHc
Confidence 34566778999999999999999999653
No 10
>PHA03050 glutaredoxin; Provisional
Probab=94.48 E-value=0.043 Score=44.94 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=27.2
Q ss_pred HHHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.+-+.+++..+++|+..|||+|.+-|++|-+.
T Consensus 5 ~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 5 FVQQRLANNKVTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred HHHHHhccCCEEEEECCCChHHHHHHHHHHHc
Confidence 45566778889999999999999999999653
No 11
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=94.08 E-value=0.056 Score=44.37 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=29.0
Q ss_pred hhHHHHHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 254 ~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.++++.|+.=++.=.+.|.|.||++|++.+..|-+.
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~ 44 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAES 44 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhh
Confidence 456677777677778999999999999998887763
No 12
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=93.97 E-value=1.6 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=17.7
Q ss_pred cccceeeccccChhhHHHHHh-HH
Q 022610 265 AIGAKMYGAFWCSHCLEQKQV-LH 287 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~l-fg 287 (294)
+.=.+++.|.||++|++.++. |.
T Consensus 475 K~VlVdF~A~WC~~Ck~~e~~~~~ 498 (571)
T PRK00293 475 KPVMLDLYADWCVACKEFEKYTFS 498 (571)
T ss_pred CcEEEEEECCcCHhHHHHHHHhcC
Confidence 444678999999999988664 53
No 13
>PHA02125 thioredoxin-like protein
Probab=93.91 E-value=0.043 Score=41.25 Aligned_cols=21 Identities=33% Similarity=0.833 Sum_probs=18.5
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.++|++.||++|.+.|+.|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 368999999999999999854
No 14
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=93.69 E-value=0.05 Score=39.27 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=18.8
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.++|.+.|||+|.+.|+++-+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~ 23 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANR 23 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHH
Confidence 578999999999999999875
No 15
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=93.66 E-value=0.056 Score=39.26 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.6
Q ss_pred cccceeeccccChhhHHHHHhHHhh
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
+.-..+|++.||++|+++++.+.+-
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~ 35 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEEL 35 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHH
Confidence 4557899999999999999999763
No 16
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=93.50 E-value=0.059 Score=38.43 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.8
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.++|+..|||+|.+-|++|-+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~ 21 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE 21 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHHH
Confidence 368999999999999999954
No 17
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=93.43 E-value=0.083 Score=42.10 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=21.4
Q ss_pred cccceeeccccChhhHHHHHhHHhhh
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
+.=..+|.+.|||||++.+..|.+-+
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la 47 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELA 47 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHH
Confidence 35568999999999999999887643
No 18
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=93.27 E-value=0.084 Score=42.75 Aligned_cols=20 Identities=15% Similarity=0.188 Sum_probs=17.0
Q ss_pred cceeeccccChhhHHHHHhH
Q 022610 267 GAKMYGAFWCSHCLEQKQVL 286 (294)
Q Consensus 267 ga~~yga~wCp~C~~Qk~lf 286 (294)
=.++|++.|||+|++.++.+
T Consensus 17 vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 17 LLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred EEEEEeCCCCHHHHHHHHHh
Confidence 46889999999999988655
No 19
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=93.19 E-value=0.062 Score=41.10 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.0
Q ss_pred ceeeccccChhhHHHHHhHHhhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~a 290 (294)
..+|.+.||++|.+++..|.+-+
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~ 44 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLA 44 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHH
Confidence 67899999999999999987643
No 20
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.13 E-value=0.062 Score=44.59 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=24.6
Q ss_pred HHHHHhc--cccceeeccccChhhHHHHHhHHhhh
Q 022610 258 SLAKHLH--AIGAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 258 ~la~~L~--~~ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
++-+.++ +...++||+.|||+|++-+-.|.+-+
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~ 49 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVV 49 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHH
Confidence 3444444 35689999999999999888776643
No 21
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=93.10 E-value=0.063 Score=39.70 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=19.0
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.+.|.+.|||+|.+.++.+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~ 23 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEE 23 (82)
T ss_pred EEEEECCCCcchHHHHHHHHH
Confidence 568999999999999999876
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.03 E-value=0.078 Score=37.36 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.7
Q ss_pred ceeeccccChhhHHHHHhHHhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.++|+..|||+|++-|++|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~ 23 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4799999999999999998764
No 23
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.88 E-value=0.084 Score=40.05 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.9
Q ss_pred cccceeeccccChhhHHHHHhHHh
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
+...++|+..|||+|++-|+++.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~ 30 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE 30 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH
Confidence 445689999999999999999965
No 24
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=92.81 E-value=0.11 Score=42.31 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=23.8
Q ss_pred HHHHhcccc-c-eeeccccChhhHHHHHhHHhhh
Q 022610 259 LAKHLHAIG-A-KMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 259 la~~L~~~g-a-~~yga~wCp~C~~Qk~lfg~~a 290 (294)
++++|++.- . +++++.|||+|.+.|+++-+-+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la 48 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELS 48 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHH
Confidence 666665432 3 4559999999999999987644
No 25
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=92.68 E-value=0.09 Score=39.32 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=19.5
Q ss_pred ceeeccccChhhHHHHHhHHhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.++|+..|||+|++.|++|-+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~ 22 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK 22 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc
Confidence 3699999999999999998764
No 26
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=92.48 E-value=0.094 Score=38.94 Aligned_cols=22 Identities=18% Similarity=0.532 Sum_probs=19.8
Q ss_pred ceeeccccChhhHHHHHhHHhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.++|++.|||+|.+-|+++.+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~ 23 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKEL 23 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHc
Confidence 4799999999999999998764
No 27
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=92.17 E-value=0.18 Score=39.77 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=24.0
Q ss_pred HHHHHhcccc--ceeeccccChhhHHHHHhHHhh
Q 022610 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 258 ~la~~L~~~g--a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
++.+++++.+ ..+|.|.||++|...+..|.+-
T Consensus 9 ~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~ 42 (102)
T cd02948 9 EWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKI 42 (102)
T ss_pred HHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHH
Confidence 4445554444 4699999999999999998763
No 28
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.12 E-value=0.11 Score=38.24 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=19.8
Q ss_pred ceeeccccChhhHHHHHhHHhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
+++|+..|||+|++-|+++.+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~ 24 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 5799999999999999999753
No 29
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=92.01 E-value=1.1 Score=38.62 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhHh-cCC-CCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 022610 67 AGIGGVGFLETTYLSYLKL-TNS-DAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (294)
Q Consensus 67 l~La~iGll~S~YLt~~kl-~~~-~~~C~i~~~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~ 132 (294)
+.++..|+..+.|-.+.+. +.. .+.|. +.+|.++ .| +++|++.|.+-+++|..++++.+.
T Consensus 69 l~~a~~G~~iA~~hv~lQ~~p~~~~~~Cg--~g~Ca~~---~~-~fl~lsiP~wSl~aF~~i~~l~~~ 130 (135)
T PRK00611 69 LPLALVGFGIAIYQVCLQEIPGMTLDICG--RVSCSTK---LF-LFGFITMPMASAAAFCAIACLLVL 130 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCCCC--CCCCccc---ch-hcccccHHHHHHHHHHHHHHHHHH
Confidence 4557799999999887663 332 35775 3589998 34 789999999999999988776654
No 30
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=91.76 E-value=0.13 Score=33.50 Aligned_cols=21 Identities=29% Similarity=0.695 Sum_probs=18.4
Q ss_pred eeeccccChhhHHHHHhHHhh
Q 022610 269 KMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 269 ~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.+|.+.|||+|+++++.+-+.
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~ 22 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAEL 22 (69)
T ss_pred EEEECCCChhHHhhhhHHHHH
Confidence 578899999999999998853
No 31
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=91.67 E-value=0.14 Score=39.97 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=20.0
Q ss_pred HHHHhcccc--ceeeccccChhhHHHHHhH
Q 022610 259 LAKHLHAIG--AKMYGAFWCSHCLEQKQVL 286 (294)
Q Consensus 259 la~~L~~~g--a~~yga~wCp~C~~Qk~lf 286 (294)
+.+.+++-. .++|++.||++|.+.+..+
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~ 33 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVV 33 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHHHHh
Confidence 344444433 5789999999999988654
No 32
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=91.51 E-value=0.15 Score=38.65 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.8
Q ss_pred cccceeeccccChhhHHHHHhHHhhh
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
+.-.++|.+.||++|++++..|-+-+
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~ 43 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLA 43 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCccccccceecccc
Confidence 45568999999999999999987644
No 33
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=91.28 E-value=0.12 Score=39.53 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=19.6
Q ss_pred cceeeccccChhhHHHHHhHHhhh
Q 022610 267 GAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 267 ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
=..+|.|.||++|++++..|.+-+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~ 42 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLA 42 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHH
Confidence 346888999999999998887643
No 34
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=91.16 E-value=0.17 Score=37.13 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.5
Q ss_pred ceeeccccChhhHHHHHhHHhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.++|+..|||+|++.|+++-+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~ 23 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK 23 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC
Confidence 4799999999999999999653
No 35
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=91.08 E-value=0.15 Score=38.97 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=19.6
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.++|+..|||+|.+-|+++-+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~ 23 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEK 23 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHh
Confidence 579999999999999999987
No 36
>PRK10638 glutaredoxin 3; Provisional
Probab=90.71 E-value=0.19 Score=38.27 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.2
Q ss_pred cceeeccccChhhHHHHHhHHhh
Q 022610 267 GAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 267 ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
..++|+..|||+|++-|+++-+.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~ 25 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSK 25 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHc
Confidence 46799999999999999998753
No 37
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=90.64 E-value=1.5 Score=37.90 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhH-hc---CCCCCCCCCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 022610 64 GWCAGIGGVGFLETTYLSYLK-LT---NSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (294)
Q Consensus 64 ~w~l~La~iGll~S~YLt~~k-l~---~~~~~C~i~~~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~ 132 (294)
++.+.++..|+.++.|-.+.+ ++ +..+.|. +.+|.++.-.+ +.|++.+.+-+++|.+++++.+.
T Consensus 67 ~y~~l~a~~G~~iA~~h~~lq~~p~~~~~~~~Cg--~~~Ca~~~~~~---~g~lsiP~wSl~~F~~i~~l~~~ 134 (139)
T PRK03113 67 SYSLPISSIGACISLYHYAIQKIPFFSAAAASCG--RVPCTGEYINW---FGFVTIPFLALIAFITIAVCSFI 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCC--CCChhhhhHHH---hccCcHHHHHHHHHHHHHHHHHH
Confidence 445667789999999887765 34 2235675 34898865543 45699999999999998877665
No 38
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.57 E-value=0.3 Score=38.94 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=26.6
Q ss_pred HHHHHHhccccceeecc-----ccChhhHHHHHhHHh
Q 022610 257 LSLAKHLHAIGAKMYGA-----FWCSHCLEQKQVLHQ 288 (294)
Q Consensus 257 ~~la~~L~~~ga~~yga-----~wCp~C~~Qk~lfg~ 288 (294)
..+.+.+++..++.|.- .|||+|++-|++|-+
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~ 39 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKA 39 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHH
Confidence 35667788888999954 899999999999965
No 39
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=90.43 E-value=0.2 Score=38.95 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=23.2
Q ss_pred HHHHhcccc--ceeeccccChhhHHHHHhHHhhh
Q 022610 259 LAKHLHAIG--AKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 259 la~~L~~~g--a~~yga~wCp~C~~Qk~lfg~~a 290 (294)
+.+++++.+ .++|-+.||+||++.+..|-+-|
T Consensus 11 f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a 44 (101)
T cd03003 11 FDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFA 44 (101)
T ss_pred HHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHH
Confidence 334444333 46788999999999999987654
No 40
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=90.34 E-value=0.24 Score=37.85 Aligned_cols=21 Identities=14% Similarity=-0.024 Sum_probs=18.7
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
..+|.+.||++|++.+..|.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~ 36 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLER 36 (96)
T ss_pred EEEEECCCChHHHHHHHHHHH
Confidence 588999999999999998865
No 41
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=89.89 E-value=0.34 Score=38.12 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=23.9
Q ss_pred HHHHHhcccc--ceeeccccChhhHHHHHhHHhhh
Q 022610 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 258 ~la~~L~~~g--a~~yga~wCp~C~~Qk~lfg~~a 290 (294)
.+.+++++.+ .++|.|.||++|.+.+..|-+-|
T Consensus 10 ~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a 44 (108)
T cd02996 10 NIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAA 44 (108)
T ss_pred hHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHH
Confidence 3445554433 46899999999999998887543
No 42
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=89.53 E-value=0.27 Score=36.37 Aligned_cols=21 Identities=19% Similarity=0.581 Sum_probs=19.0
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.+.|+..|||+|.+-|+++.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~ 23 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE 23 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH
Confidence 468999999999999999875
No 43
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=89.52 E-value=0.25 Score=37.89 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=18.2
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
..++.+.||+||.+.+..|.+
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~ 42 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKK 42 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHH
Confidence 467789999999999998865
No 44
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=89.48 E-value=0.29 Score=36.23 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.0
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
+++|+..+||+|++-|+++-+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~ 21 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE 21 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH
Confidence 479999999999999999865
No 45
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=89.24 E-value=0.37 Score=41.12 Aligned_cols=37 Identities=16% Similarity=0.001 Sum_probs=29.7
Q ss_pred CChhHHHHHHHhccccceeeccccChhhHHHHHh-HHh
Q 022610 252 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQV-LHQ 288 (294)
Q Consensus 252 s~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~l-fg~ 288 (294)
+=+.+++.|+.=.+.=..++++.|||+|++-++- |.+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~ 48 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEH 48 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCC
Confidence 3456778888888887899999999999998875 444
No 46
>PTZ00051 thioredoxin; Provisional
Probab=89.24 E-value=0.43 Score=36.43 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=23.4
Q ss_pred HHHHHhcc--ccceeeccccChhhHHHHHhHHhh
Q 022610 258 SLAKHLHA--IGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 258 ~la~~L~~--~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
++.+.+++ .-..+|.+.||++|++.+..|.+-
T Consensus 10 ~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l 43 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYAEWCGPCKRIAPFYEEC 43 (98)
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHH
Confidence 34444444 345689999999999999988763
No 47
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=89.17 E-value=0.3 Score=36.93 Aligned_cols=22 Identities=18% Similarity=0.612 Sum_probs=17.9
Q ss_pred ceeeccccChhhHHHHHhHHhhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~a 290 (294)
..+|+ .|||+|..-++.|-+-+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~ 24 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAV 24 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHH
Confidence 46887 99999999988877644
No 48
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=89.10 E-value=0.38 Score=37.14 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=23.1
Q ss_pred HHhccccceeeccccChhhHHHHHhHHhhh
Q 022610 261 KHLHAIGAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 261 ~~L~~~ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
+.++..-.++|-|.|||+|.+.+..|-+=+
T Consensus 13 ~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~ 42 (101)
T cd02994 13 LVLEGEWMIEFYAPWCPACQQLQPEWEEFA 42 (101)
T ss_pred HHhCCCEEEEEECCCCHHHHHHhHHHHHHH
Confidence 344455578999999999999998887533
No 49
>PRK10329 glutaredoxin-like protein; Provisional
Probab=89.06 E-value=0.3 Score=37.72 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.7
Q ss_pred ceeeccccChhhHHHHHhHHhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.++|+..|||+|++-|+++.+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~ 24 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR 24 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC
Confidence 5799999999999999999764
No 50
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=89.01 E-value=0.28 Score=38.87 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=19.3
Q ss_pred ceeeccccChhhHHHHHhHHhhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~a 290 (294)
.++|-|.||+||++.+..|-+-+
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la 44 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALS 44 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHH
Confidence 47899999999999998887643
No 51
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=88.71 E-value=0.46 Score=36.89 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.0
Q ss_pred cceeeccccChhhHHHHHhHHhhh
Q 022610 267 GAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 267 ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
=.++|.|.||+||++.+..|.+-+
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~ 45 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAA 45 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHH
Confidence 357899999999999998887644
No 52
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=88.66 E-value=0.32 Score=39.98 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=22.1
Q ss_pred cccceeeccccChhhHHHHHhHHhhhh
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVLHQSLT 291 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lfg~~a~ 291 (294)
+.-.++|-|.||+||+.-+..|.+-|.
T Consensus 30 ~~vlV~FyA~WC~~Ck~l~p~~~~la~ 56 (113)
T cd03006 30 EVSLVMYYAPWDAQSQAARQEFEQVAQ 56 (113)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 345578889999999999999987553
No 53
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=88.42 E-value=0.36 Score=40.84 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHhccccceeeccccChhhHHHHHhHHhh
Q 022610 260 AKHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 260 a~~L~~~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
|..-.+.=.++|.|.||++|...+..|.+-
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l 45 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKL 45 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHH
Confidence 333344556789999999999999888763
No 54
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=87.66 E-value=0.41 Score=37.18 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=18.9
Q ss_pred ceeeccccChhhHHHHHhHHhhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~a 290 (294)
.++|-|.||+||++.+..|-+-+
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a 44 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAA 44 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHH
Confidence 57888999999999988876643
No 55
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=87.00 E-value=0.37 Score=37.78 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=19.9
Q ss_pred cccceeeccccChhhHHHHHhHHh
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
+.=..+|.+.|||+|.+.+..|.+
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~~ 39 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWNE 39 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHHH
Confidence 344578999999999999888765
No 56
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=86.89 E-value=0.71 Score=35.74 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=22.8
Q ss_pred HHHHHhcccc---ceeeccccChhhHHHHHhHHh
Q 022610 258 SLAKHLHAIG---AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 258 ~la~~L~~~g---a~~yga~wCp~C~~Qk~lfg~ 288 (294)
+|.+.+.+.+ .++|.+.||+.|+++++.+-+
T Consensus 4 ~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~ 37 (97)
T cd02949 4 ALRKLYHESDRLILVLYTSPTCGPCRTLKPILNK 37 (97)
T ss_pred hHHHHHHhCCCeEEEEEECCCChhHHHHHHHHHH
Confidence 3444444433 478999999999999988854
No 57
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=86.69 E-value=0.57 Score=39.31 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=28.1
Q ss_pred ChhHHHHHHHhccccceeeccccChhhHHHH-HhHHh
Q 022610 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQK-QVLHQ 288 (294)
Q Consensus 253 ~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk-~lfg~ 288 (294)
++++.+.|+.=.+.=...+++.||+.|+.-+ +.|.+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~ 40 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFED 40 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCC
Confidence 3456777777777767889999999999885 57776
No 58
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=86.51 E-value=0.34 Score=36.44 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=23.6
Q ss_pred HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
..+++--++.-..+|.+.|||+|.++...+-+
T Consensus 12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 12 VSLSDLKGKVVLVNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred eehHHcCCCEEEEEeecccChhHHHHhHHHHH
Confidence 44444335667789999999999988777665
No 59
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=86.36 E-value=0.49 Score=38.73 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=25.0
Q ss_pred hHHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610 255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 255 ~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
..+.|++.-.+.=..++.+.|||+|.++...+.+
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~ 41 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVE 41 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHH
Confidence 4455665555666688999999999998766653
No 60
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=86.24 E-value=0.77 Score=35.07 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=19.4
Q ss_pred ccceeeccccChhhHHHHHhHHhh
Q 022610 266 IGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 266 ~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.=.+.|.+.|||+|.+.+..|.+-
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~ 42 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKA 42 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHH
Confidence 345799999999999998777653
No 61
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=86.10 E-value=0.59 Score=36.94 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=23.8
Q ss_pred HHHHHhcc----ccceeeccccChhhHHHHHhHHhh
Q 022610 258 SLAKHLHA----IGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 258 ~la~~L~~----~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
++.+++++ .=.+.|.|.||++|...+..|-+-
T Consensus 5 ~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l 40 (103)
T cd02985 5 ELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKL 40 (103)
T ss_pred HHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHH
Confidence 45555543 345789999999999999888753
No 62
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=85.35 E-value=0.97 Score=39.24 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=24.6
Q ss_pred HHHHHhcccc----ceeeccccChhhHHHHHhHHhhh
Q 022610 258 SLAKHLHAIG----AKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 258 ~la~~L~~~g----a~~yga~wCp~C~~Qk~lfg~~a 290 (294)
++.+.+.+.+ .++|-|.|||+|++.+..|.+=+
T Consensus 37 ~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la 73 (152)
T cd02962 37 TLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELS 73 (152)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 3556664332 67999999999999999887643
No 63
>PHA02278 thioredoxin-like protein
Probab=85.08 E-value=1.1 Score=36.11 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHHHHHhcccc--ceeeccccChhhHHHHHhHHhh
Q 022610 257 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 257 ~~la~~L~~~g--a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.++.+++++-+ .++|.|.||+.|...+..|-+-
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l 39 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMF 39 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHH
Confidence 35555554333 4789999999999999988763
No 64
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=85.05 E-value=0.62 Score=37.37 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=19.6
Q ss_pred cccceeeccccChhhHHHHHhHHh
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
+.=.++|-|.||++|++.+..|-+
T Consensus 25 ~~vlV~F~a~wC~~C~~~~p~~~~ 48 (111)
T cd02963 25 KPYLIKITSDWCFSCIHIEPVWKE 48 (111)
T ss_pred CeEEEEEECCccHhHHHhhHHHHH
Confidence 344578999999999999988764
No 65
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=84.87 E-value=0.65 Score=37.63 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
.++|++.-.+.-..++.+.|||+|+++...+.+
T Consensus 10 ~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~ 42 (131)
T cd03009 10 KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVE 42 (131)
T ss_pred CccHHHhCCcEEEEEEECCCChHHHHHhHHHHH
Confidence 456666666677889999999999988776653
No 66
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=84.28 E-value=0.75 Score=35.03 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=19.4
Q ss_pred ceeeccccChhhHHHHHhHHhhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~a 290 (294)
.++|.+.||++|+..++.|.+-+
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~ 44 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELA 44 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHH
Confidence 47899999999999988887643
No 67
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=83.50 E-value=0.89 Score=37.91 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.4
Q ss_pred cceeeccccChhhHHHHHhHHhhh
Q 022610 267 GAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 267 ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
=.+.|+|.||+.|..-+..|.+=|
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la 40 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIA 40 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHH
Confidence 357899999999999999997744
No 68
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=83.35 E-value=0.82 Score=37.05 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=23.3
Q ss_pred HHHHHhcccc---ceeeccccChhhHHHHHhHHhh
Q 022610 258 SLAKHLHAIG---AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 258 ~la~~L~~~g---a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.+.++.++.+ ..+|-+.||++|+..+..|-+=
T Consensus 10 ~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~l 44 (114)
T cd02992 10 SFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKL 44 (114)
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHH
Confidence 3445554443 4688899999999999888763
No 69
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=83.04 E-value=1.5 Score=32.41 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=24.8
Q ss_pred HHHHHhccc--cceeeccccChhhHHHHHhHHhhh
Q 022610 258 SLAKHLHAI--GAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 258 ~la~~L~~~--ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
++.+.+++. -..+|.+.||++|.+.+..|-+-+
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~ 41 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLA 41 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHH
Confidence 444555554 567899999999999999987643
No 70
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=82.54 E-value=6 Score=34.56 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=18.4
Q ss_pred ccccceeeccccChhhHHHHHhHHh
Q 022610 264 HAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 264 ~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
.+.=...|-|.|||+|.++...+.+
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~ 92 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQ 92 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHH
Confidence 3444567779999999998766643
No 71
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=82.50 E-value=1.1 Score=36.95 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=25.9
Q ss_pred HHHHhccccceeeccccChhhHHHHHhHHh
Q 022610 259 LAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 259 la~~L~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
.=+-..+..+++|.-.|||.||.-|+||-+
T Consensus 7 v~~~i~~~~VVifSKs~C~~c~~~k~ll~~ 36 (104)
T KOG1752|consen 7 VRKMISENPVVIFSKSSCPYCHRAKELLSD 36 (104)
T ss_pred HHHHhhcCCEEEEECCcCchHHHHHHHHHh
Confidence 345567788999999999999999999976
No 72
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=82.44 E-value=0.65 Score=36.86 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=23.8
Q ss_pred HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
..++++.-++.-...|.+.|||+|+.+...+.+
T Consensus 12 ~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~ 44 (123)
T cd03011 12 QFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQ 44 (123)
T ss_pred EeeHHHhCCCEEEEEEECCcChhhhhhChHHHH
Confidence 344555445666778889999999999766653
No 73
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=81.81 E-value=1.1 Score=34.84 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=23.0
Q ss_pred HHhccccceeecc-----ccChhhHHHHHhHHhh
Q 022610 261 KHLHAIGAKMYGA-----FWCSHCLEQKQVLHQS 289 (294)
Q Consensus 261 ~~L~~~ga~~yga-----~wCp~C~~Qk~lfg~~ 289 (294)
+.+++..+++|.- .|||+|++-|++|-+.
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence 4566677888854 6999999999999653
No 74
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=81.72 E-value=0.86 Score=34.48 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=18.0
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
..+|.+.||++|++.++.|-+
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~ 37 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEK 37 (102)
T ss_pred EEEEECCCCHHHHhhChHHHH
Confidence 579999999999998877755
No 75
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=81.52 E-value=1 Score=34.68 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.2
Q ss_pred ceeeccccChhhHHHHHhHHhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
..+|+-.+||+|++-|+++-+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~ 24 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK 24 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc
Confidence 5799999999999999998653
No 76
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=81.43 E-value=1.2 Score=33.88 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=19.2
Q ss_pred ceeeccccChhhHHHHHhHHhhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~a 290 (294)
..+|.+.||++|++.++.|.+-+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~ 40 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELA 40 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHH
Confidence 46788999999999999887643
No 77
>PRK09381 trxA thioredoxin; Provisional
Probab=80.14 E-value=1.3 Score=34.68 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=20.0
Q ss_pred cccceeeccccChhhHHHHHhHHhh
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
+.-..++-+.|||+|..++..|.+-
T Consensus 22 ~~vvv~f~~~~C~~C~~~~p~~~~l 46 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMIAPILDEI 46 (109)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHH
Confidence 3446788899999999999888753
No 78
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=79.83 E-value=2.8 Score=35.27 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=23.4
Q ss_pred HHHHHHHhccccceeeccccChhhHHHHHhHHhh
Q 022610 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
..++++.-++.=..++-+.|||+|.++..-|.+.
T Consensus 53 ~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~ 86 (173)
T PRK03147 53 KIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNEL 86 (173)
T ss_pred EEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHH
Confidence 3456664344455677799999999987666553
No 79
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=79.68 E-value=20 Score=37.71 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=21.6
Q ss_pred HHHHHHHhccccceeeccccChhhHHHHH-hHH
Q 022610 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-VLH 287 (294)
Q Consensus 256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~-lfg 287 (294)
..++|+|=++.=..-|-|.||-.|++-|+ .|.
T Consensus 466 ~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfs 498 (569)
T COG4232 466 DQALAEAKAKPVMLDFYADWCVTCKENEKYTFS 498 (569)
T ss_pred HHHHHhCCCCcEEEeeehhHHHHhHhhhhhccC
Confidence 34455554444467899999999998765 354
No 80
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=79.57 E-value=1.7 Score=41.01 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=26.1
Q ss_pred HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
..+++.-++.+..+|-+.|||+|++++..+-+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~ 190 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQA 190 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHH
Confidence 56666667888899999999999999877654
No 81
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=79.26 E-value=1.4 Score=35.33 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=22.7
Q ss_pred HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
.++++..-.+.=..+|-+.|||+|.++...+.+
T Consensus 17 ~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~ 49 (127)
T cd03010 17 TLTSADLKGKPYLLNVWASWCAPCREEHPVLMA 49 (127)
T ss_pred cccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHH
Confidence 345554434444566779999999998877765
No 82
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=79.15 E-value=1.4 Score=40.59 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=18.7
Q ss_pred ceeeccccChhhHHHHHhHHhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.++|-|.|||||.+.+..|.+-
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~l 77 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERL 77 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHH
Confidence 4788899999999999888653
No 83
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=78.68 E-value=1.9 Score=38.60 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=20.8
Q ss_pred ccccceeeccccChhhHHHHHhHHhhh
Q 022610 264 HAIGAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
+..-.+.|.+.|||||.+-++++-+-+
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~ 159 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFA 159 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHH
Confidence 344567799999999999888776533
No 84
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=77.83 E-value=1.8 Score=35.16 Aligned_cols=32 Identities=6% Similarity=-0.090 Sum_probs=23.0
Q ss_pred HHHHHhcccc--ceeeccccChhhHHHHHhHHhh
Q 022610 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 258 ~la~~L~~~g--a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
++-+.+++.+ .++|.+.||++|+.++..+.+=
T Consensus 14 ~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~l 47 (113)
T cd02989 14 EFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEIL 47 (113)
T ss_pred HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHH
Confidence 3444444333 4689999999999999888763
No 85
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=77.71 E-value=1.2 Score=32.38 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=15.9
Q ss_pred ccccChhhHHHHHhHHhhh
Q 022610 272 GAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 272 ga~wCp~C~~Qk~lfg~~a 290 (294)
.+.|||+|.+.+..+.+-+
T Consensus 40 ~~~~C~~C~~~~~~l~~~~ 58 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELA 58 (127)
T ss_pred EcCcCHHHHhhchhHHHHH
Confidence 4999999999988887643
No 86
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=77.52 E-value=1.7 Score=37.66 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=21.4
Q ss_pred hccccceeeccccChhhHHHHHhHHh
Q 022610 263 LHAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 263 L~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
+.+....+|-|.|||.|+++...+.+
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~ 74 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKR 74 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHH
Confidence 45556999999999999998877664
No 87
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=77.47 E-value=1.1 Score=35.02 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=21.1
Q ss_pred HHHHHHh-ccccceeeccccChhhHHHHHhHHh
Q 022610 257 LSLAKHL-HAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 257 ~~la~~L-~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
++|+.+. .+.=..+|-+.|||+|.++...+.+
T Consensus 13 ~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~ 45 (114)
T cd02967 13 VRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRS 45 (114)
T ss_pred EEcccccCCCeEEEEEECCCCcchHhHhHHHHH
Confidence 3444443 3333466779999999998776654
No 88
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=77.03 E-value=2 Score=35.30 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=20.7
Q ss_pred hhHHHHHHHhcccccee-eccccChhhHHHHHhHHh
Q 022610 254 PFALSLAKHLHAIGAKM-YGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 254 ~~~~~la~~L~~~ga~~-yga~wCp~C~~Qk~lfg~ 288 (294)
.....|++.-.+.-... |...|||.|+++...+.+
T Consensus 18 g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~ 53 (146)
T PF08534_consen 18 GKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNE 53 (146)
T ss_dssp SEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred CCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHh
Confidence 34455555223333444 444499999999865544
No 89
>PRK01749 disulfide bond formation protein B; Provisional
Probab=76.63 E-value=19 Score=31.98 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhHhcCCC-CCCCC------------------CC-CCccccccccchhccCCchhHHHHHHHHHHHHH
Q 022610 70 GGVGFLETTYLSYLKLTNSD-AFCPI------------------GG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVL 129 (294)
Q Consensus 70 a~iGll~S~YLt~~kl~~~~-~~C~i------------------~~-~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~L 129 (294)
+..|...+.|-...+.-..+ ..|+. .+ .+|+++. -++||++.+-+-+++|..++++
T Consensus 82 al~G~~iA~~hv~~q~~~~~~~~C~~~~~~~~~lpl~~~l~~lf~~~~~C~~~~----w~~lGlSmp~wsll~F~~~~~~ 157 (176)
T PRK01749 82 AWKGLQLALEHTDYQLNPSPFNTCDFFVEFPSWLPLDKWLPSVFVASGDCSERQ----WQFLGLEMPQWLVVIFAAYLVV 157 (176)
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCCcccccccCCHHHHHHHhcCCCCCCCCcc----hhhcccCHHHHHHHHHHHHHHH
Confidence 45888888887654432222 57863 23 6798664 4589999999999999998877
Q ss_pred H
Q 022610 130 G 130 (294)
Q Consensus 130 a 130 (294)
+
T Consensus 158 ~ 158 (176)
T PRK01749 158 A 158 (176)
T ss_pred H
Confidence 5
No 90
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=76.34 E-value=3.1 Score=32.60 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=26.1
Q ss_pred HHHHHhccc-cceeeccccChhhHHHHHhHHhhh
Q 022610 258 SLAKHLHAI-GAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 258 ~la~~L~~~-ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
+.++.|++. ..+.|.+.|||+|.+-++++.+-+
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~ 38 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMA 38 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHH
Confidence 444456654 889999999999999999997644
No 91
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=75.91 E-value=2.4 Score=31.74 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=22.5
Q ss_pred HHHHHhccc---cceeeccccChhhHHHHHhHHh
Q 022610 258 SLAKHLHAI---GAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 258 ~la~~L~~~---ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
.+.+.+++. =+.+|.+.||++|.+.++.|.+
T Consensus 5 ~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~ 38 (101)
T TIGR01068 5 NFDETIASSDKPVLVDFWAPWCGPCKMIAPILEE 38 (101)
T ss_pred HHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHH
Confidence 344555443 2467889999999999988865
No 92
>PTZ00102 disulphide isomerase; Provisional
Probab=75.70 E-value=1.8 Score=42.47 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=18.9
Q ss_pred ceeeccccChhhHHHHHhHHhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.++|-|.||+||++.+..|-+-
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~ 400 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNEL 400 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHH
Confidence 4789999999999999888764
No 93
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=75.36 E-value=2.3 Score=34.03 Aligned_cols=33 Identities=6% Similarity=-0.030 Sum_probs=23.9
Q ss_pred HHHHHhccc-----cceeeccccChhhHHHHHhHHhhh
Q 022610 258 SLAKHLHAI-----GAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 258 ~la~~L~~~-----ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
++.+.+.+. =.+.|.+.||++|+..+..|-+-|
T Consensus 13 ~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la 50 (113)
T cd02957 13 EFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELA 50 (113)
T ss_pred HHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 444454443 346899999999999999987643
No 94
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=74.32 E-value=2.7 Score=36.21 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=17.0
Q ss_pred cccceeeccccChhhHHHHHhHHh
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
+.=..+|-+.|||+|+++...+.+
T Consensus 64 k~vll~F~a~wC~~C~~~~p~l~~ 87 (173)
T TIGR00385 64 KPVLLNVWASWCPPCRAEHPYLNE 87 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHH
Confidence 334456668999999998666543
No 95
>PRK10996 thioredoxin 2; Provisional
Probab=74.31 E-value=2.4 Score=35.58 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=23.2
Q ss_pred HHHHHhcc--ccceeeccccChhhHHHHHhHHhh
Q 022610 258 SLAKHLHA--IGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 258 ~la~~L~~--~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
++-+++++ .=...|.+.||++|++.+..|-+-
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l 77 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDV 77 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHH
Confidence 44445543 335789999999999998888663
No 96
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=73.20 E-value=2.7 Score=34.05 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=22.5
Q ss_pred HHHHHHHhcccc--ceeeccccChhhHHHHHhHHh
Q 022610 256 ALSLAKHLHAIG--AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 256 ~~~la~~L~~~g--a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.+.|.+..++.. ..+|-++|||.|.+|-.-+-+
T Consensus 14 ~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~ 48 (149)
T cd02970 14 TVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSK 48 (149)
T ss_pred EEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHH
Confidence 345666654332 456789999999998776654
No 97
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=73.00 E-value=2.4 Score=35.21 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=19.0
Q ss_pred ceeecccc--ChhhHHHHHhHHhhhh
Q 022610 268 AKMYGAFW--CSHCLEQKQVLHQSLT 291 (294)
Q Consensus 268 a~~yga~w--Cp~C~~Qk~lfg~~a~ 291 (294)
..+|.+.| ||+|.+++..|.+-|.
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~ 56 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLK 56 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHH
Confidence 35777775 9999999999987554
No 98
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=72.32 E-value=2.9 Score=36.16 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=25.3
Q ss_pred HHHHHHHhccc----cceeeccccChhhHHHHHhHHhhh
Q 022610 256 ALSLAKHLHAI----GAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 256 ~~~la~~L~~~----ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
..++=+++.+. =.+-|+|.||+.|..+...|-+=|
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la 49 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVA 49 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHH
Confidence 34555555433 247899999999999999887744
No 99
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=71.58 E-value=3.1 Score=34.86 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=20.6
Q ss_pred ceeeccccChhhHHHHHhHHhhhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQSLT 291 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~a~ 291 (294)
+.-++|.|||-|....+.|-+=|.
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~ 41 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSH 41 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHH
Confidence 478999999999999999987553
No 100
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=71.56 E-value=4.3 Score=33.94 Aligned_cols=31 Identities=19% Similarity=0.515 Sum_probs=20.9
Q ss_pred HHHHHhccc----cceeecc-------ccChhhHHHHHhHHh
Q 022610 258 SLAKHLHAI----GAKMYGA-------FWCSHCLEQKQVLHQ 288 (294)
Q Consensus 258 ~la~~L~~~----ga~~yga-------~wCp~C~~Qk~lfg~ 288 (294)
++-+.+++. =.+.|-| .|||.|..++..+-+
T Consensus 11 ~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~ 52 (119)
T cd02952 11 EFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVRE 52 (119)
T ss_pred HHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHH
Confidence 344455432 2466777 999999998876654
No 101
>PTZ00102 disulphide isomerase; Provisional
Probab=71.16 E-value=7.2 Score=38.31 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=19.4
Q ss_pred cccceeeccccChhhHHHHHhHHhh
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lfg~~ 289 (294)
+.=.++|.|.||+||++-+.-|-+-
T Consensus 50 ~~~lv~f~a~wC~~Ck~~~p~~~~~ 74 (477)
T PTZ00102 50 EIVLVKFYAPWCGHCKRLAPEYKKA 74 (477)
T ss_pred CcEEEEEECCCCHHHHHhhHHHHHH
Confidence 3456889999999999887666553
No 102
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=70.39 E-value=3.6 Score=29.92 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=17.4
Q ss_pred eeeccccChhhHHHHHhHHh
Q 022610 269 KMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 269 ~~yga~wCp~C~~Qk~lfg~ 288 (294)
++|+..|||+|++-+.++.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~ 21 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLL 21 (71)
T ss_pred EEEecCCCcHHHHHHHHHHH
Confidence 68999999999999887753
No 103
>PRK10824 glutaredoxin-4; Provisional
Probab=70.11 E-value=5.6 Score=33.19 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=25.8
Q ss_pred HHHHHHhccccceeecc-----ccChhhHHHHHhHHhh
Q 022610 257 LSLAKHLHAIGAKMYGA-----FWCSHCLEQKQVLHQS 289 (294)
Q Consensus 257 ~~la~~L~~~ga~~yga-----~wCp~C~~Qk~lfg~~ 289 (294)
..+.+.+++..++.|.. .|||+|++-|++|-+.
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 34556677777888876 4999999999999653
No 104
>PRK02935 hypothetical protein; Provisional
Probab=69.74 E-value=3.3 Score=34.55 Aligned_cols=14 Identities=21% Similarity=0.641 Sum_probs=8.1
Q ss_pred cChhhHHHHHhHHh
Q 022610 275 WCSHCLEQKQVLHQ 288 (294)
Q Consensus 275 wCp~C~~Qk~lfg~ 288 (294)
+||.|+++-++.|+
T Consensus 72 ~CP~C~K~TKmLGr 85 (110)
T PRK02935 72 ICPSCEKPTKMLGR 85 (110)
T ss_pred ECCCCCchhhhccc
Confidence 55555555555555
No 105
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=69.58 E-value=3.1 Score=36.56 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=17.9
Q ss_pred cceeeccccChhhHHHHHhHHh
Q 022610 267 GAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 267 ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
...+|.++.||||++.++...+
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 3468999999999999877653
No 106
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=69.55 E-value=22 Score=28.04 Aligned_cols=38 Identities=5% Similarity=-0.205 Sum_probs=20.6
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 022610 194 ISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSIQPL 232 (294)
Q Consensus 194 ltl~~~~~~d~~q~~~~~~~va~~~~~~l~~~y~~~~~~ 232 (294)
....|.+|++..+. ..+++-+++++++++++..++++.
T Consensus 28 ~~~fG~~~~~~~~~-l~~~i~~v~~lL~~lGii~DPTT~ 65 (78)
T TIGR01598 28 LDNFGVLWLSFNRQ-LNAPIAAITTILAVVGIIMDPTTS 65 (78)
T ss_pred HHHhcchHHHHHHH-HHHHHHHHHHHHHHHheecCCCCC
Confidence 34457777765442 333334455556666677665443
No 107
>PLN02309 5'-adenylylsulfate reductase
Probab=69.54 E-value=4.7 Score=41.15 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=22.0
Q ss_pred ccccceeeccccChhhHHHHHhHHhhh
Q 022610 264 HAIGAKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a 290 (294)
++.=.++|-|.||+||++.+..|.+=|
T Consensus 365 ~k~vlV~FyApWC~~Cq~m~p~~e~LA 391 (457)
T PLN02309 365 KEPWLVVLYAPWCPFCQAMEASYEELA 391 (457)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHH
Confidence 444568999999999999999987643
No 108
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=69.38 E-value=4 Score=34.37 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=10.2
Q ss_pred ChhhHHHHHhHHhh
Q 022610 276 CSHCLEQKQVLHQS 289 (294)
Q Consensus 276 Cp~C~~Qk~lfg~~ 289 (294)
||.|++|..++|++
T Consensus 72 CP~C~K~TKmLGr~ 85 (114)
T PF11023_consen 72 CPNCGKQTKMLGRV 85 (114)
T ss_pred CCCCCChHhhhchh
Confidence 77777777777765
No 109
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=67.64 E-value=0.74 Score=36.43 Aligned_cols=30 Identities=17% Similarity=0.446 Sum_probs=17.8
Q ss_pred HHHhcccccee------eccccChhhHHHHHhHHhh
Q 022610 260 AKHLHAIGAKM------YGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 260 a~~L~~~ga~~------yga~wCp~C~~Qk~lfg~~ 289 (294)
.+-+++.+..- -+-|-||||.+..++||+.
T Consensus 46 ~~~~~~~~vpilGvVENMs~~~Cp~Cg~~~~iFg~G 81 (81)
T PF10609_consen 46 IDMFRKLNVPILGVVENMSYFVCPHCGERIYIFGKG 81 (81)
T ss_dssp HHHHHCTT-EEEEEEECT-EEE-TTT--EEETTTTT
T ss_pred HHHHHhcCCCcEEEEECCCccCCCCCCCeecCCCCC
Confidence 34455555533 3578999999999999973
No 110
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=67.03 E-value=4.5 Score=31.78 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=20.2
Q ss_pred HHHHHHHhccccceeeccc-cChhhHHHHHhHHh
Q 022610 256 ALSLAKHLHAIGAKMYGAF-WCSHCLEQKQVLHQ 288 (294)
Q Consensus 256 ~~~la~~L~~~ga~~yga~-wCp~C~~Qk~lfg~ 288 (294)
..+|++.-++.-..++=+. |||+|.++-.-+-+
T Consensus 17 ~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~ 50 (124)
T PF00578_consen 17 TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNE 50 (124)
T ss_dssp EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred EEEHHHHCCCcEEEEEeCccCccccccchhHHHH
Confidence 3555555444445444444 99999887755544
No 111
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=66.91 E-value=4 Score=41.74 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=21.2
Q ss_pred ccceeeccccChhhHHHHHhHHhhhh
Q 022610 266 IGAKMYGAFWCSHCLEQKQVLHQSLT 291 (294)
Q Consensus 266 ~ga~~yga~wCp~C~~Qk~lfg~~a~ 291 (294)
.=.++|-|.||+||+..+..|-+-|.
T Consensus 373 ~VLV~FyApWC~~Ck~m~P~~eelA~ 398 (463)
T TIGR00424 373 AWLVVLYAPWCPFCQAMEASYLELAE 398 (463)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHH
Confidence 33678999999999999999876543
No 112
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=65.26 E-value=17 Score=30.04 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=16.2
Q ss_pred ccchhHHHHHHHHHHHHHHhh
Q 022610 177 TCSYCLTSALLSFSLFFISLK 197 (294)
Q Consensus 177 lC~yC~~S~~isi~Lf~ltl~ 197 (294)
.||||+..|+.........+.
T Consensus 59 sCpwC~gvWvA~~~~~~~v~~ 79 (105)
T PF07098_consen 59 SCPWCTGVWVAAGLAAGYVFA 79 (105)
T ss_pred cChhHHHHHHHHHHHHHHHHh
Confidence 799999999988776654443
No 113
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=64.72 E-value=3 Score=37.23 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=17.8
Q ss_pred cccceeeccccChhhHHHHHhH
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVL 286 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lf 286 (294)
+.-.++|.+|-||||.+.++.+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccc
Confidence 3448999999999999876543
No 114
>PRK02110 disulfide bond formation protein B; Provisional
Probab=63.54 E-value=45 Score=29.36 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhHhcCCCCCCCCC--------------------C-CCccccccccchhccCCchhHHHHHHHHHHHH
Q 022610 70 GGVGFLETTYLSYLKLTNSDAFCPIG--------------------G-ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAV 128 (294)
Q Consensus 70 a~iGll~S~YLt~~kl~~~~~~C~i~--------------------~-~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~ 128 (294)
+..|...+.|-...+.. +...|... + .+|+++ +-++||++.+.+-+++|.++++
T Consensus 81 a~~G~~ia~~h~~~q~~-p~~~Cg~~~~~~~~~~lpl~~~~~~~f~~~g~C~~~----~w~llGlsmp~wsli~F~~~~l 155 (169)
T PRK02110 81 ALGGIAVAGRHVYIQLN-PGFSCGIDALQPIVDSLPPAKWLPGVFKVDGLCETP----YPPILGLSLPGWALIAFVLIAV 155 (169)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCCCCCcchHHHHhCCHHHHHHHHhcCCCCccCc----CccccccCHHHHHHHHHHHHHH
Confidence 55888889888877642 22667511 1 346654 3458999999999999888766
Q ss_pred HHHH
Q 022610 129 LGLL 132 (294)
Q Consensus 129 Lal~ 132 (294)
+.+.
T Consensus 156 ~~~~ 159 (169)
T PRK02110 156 AVAV 159 (169)
T ss_pred HHHH
Confidence 6443
No 115
>PRK04388 disulfide bond formation protein B; Provisional
Probab=63.52 E-value=43 Score=29.50 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhHh-c-CCCCCCCC-------------------CC-CCccccccccchhccCCchhHHHHHHHHH
Q 022610 68 GIGGVGFLETTYLSYLKL-T-NSDAFCPI-------------------GG-ASCGDVLNSDYAVVFGVPLPFIGMFAYGL 125 (294)
Q Consensus 68 ~La~iGll~S~YLt~~kl-~-~~~~~C~i-------------------~~-~sC~~VL~S~yA~vfGiPnsllGllaY~~ 125 (294)
..+..|+..++|-...+. . +....|.. .+ .+|+++- =++||++.+.+-+++|.+
T Consensus 78 ~~a~~G~~iA~~h~~lq~~~~~~~~~C~~~~~~~~~~~~~~~~l~~~~~~~~~C~~~~----w~~lGLSmp~wsll~f~~ 153 (172)
T PRK04388 78 IAAGVGMGIAARHVWVQIRPKDMMSSCGPPLSFLSETMGPFEVFRTVLTGTGDCGNID----WRFLGLSMPMWSMVWFVG 153 (172)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCcCChhhhhhhccCHHHHHHHHhCCCCCCCCCc----chhhccCHHHHHHHHHHH
Confidence 334589999998887764 2 33457841 11 4577653 347999999999999998
Q ss_pred HHHHHHH
Q 022610 126 VAVLGLL 132 (294)
Q Consensus 126 v~~Lal~ 132 (294)
++++++.
T Consensus 154 l~~l~~~ 160 (172)
T PRK04388 154 LALWALY 160 (172)
T ss_pred HHHHHHH
Confidence 8777654
No 116
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=63.50 E-value=1.9 Score=40.60 Aligned_cols=12 Identities=25% Similarity=0.969 Sum_probs=10.2
Q ss_pred eccccChhhHHH
Q 022610 271 YGAFWCSHCLEQ 282 (294)
Q Consensus 271 yga~wCp~C~~Q 282 (294)
=+.||||+||.|
T Consensus 263 R~t~~CP~CQ~~ 274 (274)
T PRK01103 263 RSTFFCPRCQKR 274 (274)
T ss_pred CCcEECcCCCCc
Confidence 578999999875
No 117
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=61.84 E-value=6.4 Score=28.46 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=18.0
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
++-|+..+||+|++-+.++..
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGL 21 (71)
T ss_pred CceEecCCCcHhHHHHHHHHH
Confidence 367999999999999988764
No 118
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=61.56 E-value=6.2 Score=32.27 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=22.5
Q ss_pred hHHHHHHHhc-cccc-eeeccccChhhHHHHHhHHh
Q 022610 255 FALSLAKHLH-AIGA-KMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 255 ~~~~la~~L~-~~ga-~~yga~wCp~C~~Qk~lfg~ 288 (294)
..+.|.+... +.-. .+|.+.|||.|.+|..-+-+
T Consensus 18 ~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 18 QEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred CEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHH
Confidence 3567777554 3333 45668999999988655543
No 119
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=60.10 E-value=4.2 Score=41.94 Aligned_cols=17 Identities=29% Similarity=0.753 Sum_probs=14.4
Q ss_pred eeeccccChhhHHHHHh
Q 022610 269 KMYGAFWCSHCLEQKQV 285 (294)
Q Consensus 269 ~~yga~wCp~C~~Qk~l 285 (294)
+.|.|.||.||.+-+-.
T Consensus 389 vEfyAPWCgHCk~laP~ 405 (493)
T KOG0190|consen 389 VEFYAPWCGHCKALAPI 405 (493)
T ss_pred EEEcCcccchhhhhhhH
Confidence 78999999999987733
No 120
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=59.99 E-value=4 Score=36.16 Aligned_cols=25 Identities=20% Similarity=0.610 Sum_probs=19.4
Q ss_pred ccccceeeccccChhhHH----HHHhHHh
Q 022610 264 HAIGAKMYGAFWCSHCLE----QKQVLHQ 288 (294)
Q Consensus 264 ~~~ga~~yga~wCp~C~~----Qk~lfg~ 288 (294)
.++.+.+|+|.|||-|.+ -|++|-+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~ 61 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEE 61 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHH
Confidence 377889999999999986 4565543
No 121
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=59.40 E-value=1.3 Score=28.03 Aligned_cols=19 Identities=21% Similarity=0.653 Sum_probs=12.8
Q ss_pred hccccceeeccccChhhHH
Q 022610 263 LHAIGAKMYGAFWCSHCLE 281 (294)
Q Consensus 263 L~~~ga~~yga~wCp~C~~ 281 (294)
+.+++.--.+.++||+|++
T Consensus 11 ~~~~~~~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 11 IEDIGINGRSTYLCPRCQK 29 (30)
T ss_dssp BEEEEETTEEEEE-TTTCC
T ss_pred ceEeEecCCCCeECcCCcC
Confidence 3445555678999999975
No 122
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=59.32 E-value=2.5e+02 Score=30.07 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=36.4
Q ss_pred CCccccccccchhccCCchhHHHHHHHHHHHHHHHH-hccccCCccccchhhHHHHHH
Q 022610 97 ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL-LARKSFPIGINESYGRLILLG 153 (294)
Q Consensus 97 ~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~-~~~~~l~~~l~~~~~rw~ll~ 153 (294)
.+=...|+++|=. +-.|..++|.++|++...+++. +..++.+..+++...+|..++
T Consensus 158 ~~lnP~Lq~~~l~-iHpp~l~lgya~~~v~f~~a~~~L~~~~~~~~~~~~~~~~~~~g 214 (628)
T TIGR03145 158 RDLNPMLQDIGLI-FHPPLLYLGYVGFAVNFAMALAALISGHLDAAVARWSRPWVLLS 214 (628)
T ss_pred CCCCchhcCCChh-hhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 4455678887655 7889999999999999888876 333333222333444544443
No 123
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=58.41 E-value=2.7 Score=40.19 Aligned_cols=11 Identities=27% Similarity=0.948 Sum_probs=9.1
Q ss_pred eccccChhhHH
Q 022610 271 YGAFWCSHCLE 281 (294)
Q Consensus 271 yga~wCp~C~~ 281 (294)
=|.||||+||+
T Consensus 263 R~t~~CP~CQ~ 273 (273)
T COG0266 263 RSTFYCPVCQK 273 (273)
T ss_pred CcCEeCCCCCC
Confidence 47899999974
No 124
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=58.20 E-value=7 Score=31.53 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=20.8
Q ss_pred HHHHHHhccccceeeccccChhhHHHHHhH
Q 022610 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVL 286 (294)
Q Consensus 257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lf 286 (294)
.+|+++-.+.=..+|=+.|||.|.++-.-+
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l 45 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYL 45 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHH
Confidence 566665445555677789999999885444
No 125
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=57.97 E-value=7.2 Score=37.70 Aligned_cols=21 Identities=24% Similarity=0.638 Sum_probs=18.4
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.++|-+.||+||.+.+..|-+
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~ 388 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEE 388 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 578999999999999888765
No 126
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=56.38 E-value=8.2 Score=31.52 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=22.9
Q ss_pred HHHHHHHhccccc-eeeccccChhhHHHHHhHHhh
Q 022610 256 ALSLAKHLHAIGA-KMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 256 ~~~la~~L~~~ga-~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.+.|++.-.+.-. .+|-.+|||+|.+|..-|-+-
T Consensus 18 ~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~ 52 (143)
T cd03014 18 EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKE 52 (143)
T ss_pred EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHH
Confidence 4667665444444 346666799999998888653
No 127
>smart00594 UAS UAS domain.
Probab=55.26 E-value=15 Score=29.97 Aligned_cols=46 Identities=11% Similarity=-0.101 Sum_probs=34.6
Q ss_pred CcccccCCCChhHHHHHHHhccccceeeccccChhhHHHH-HhHHhh
Q 022610 244 FETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQK-QVLHQS 289 (294)
Q Consensus 244 ~~~~i~~~s~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk-~lfg~~ 289 (294)
++|.....|=.++++-|++=.+.-..+.-+.||+.|++.+ +.|-.+
T Consensus 7 ~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~ 53 (122)
T smart00594 7 YGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNE 53 (122)
T ss_pred CCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCH
Confidence 3455666677778888888777889999999999999854 355443
No 128
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=55.21 E-value=8.9 Score=34.52 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=19.8
Q ss_pred HHHHHHHhccccceeeccccChhhHHHHHhHH
Q 022610 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLH 287 (294)
Q Consensus 256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg 287 (294)
...++++- .+.|=+.|||+|+++...+-
T Consensus 65 ~v~lsd~~----lV~FwaswCp~C~~e~P~L~ 92 (181)
T PRK13728 65 QVNLADWK----VVLFMQGHCPYCHQFDPVLK 92 (181)
T ss_pred EeehhHce----EEEEECCCCHhHHHHHHHHH
Confidence 44555443 78888899999999854443
No 129
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=54.10 E-value=10 Score=32.78 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=21.3
Q ss_pred HHHHHhccccceeeccccChhhHHHHHhHH
Q 022610 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLH 287 (294)
Q Consensus 258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg 287 (294)
.|++.=.+.=...|.|.|||-|.+..-.+.
T Consensus 19 ~ls~~kgk~vlL~FwAsWCppCr~e~P~L~ 48 (146)
T cd03008 19 IVARLENRVLLLFFGAVVSPQCQLFAPKLK 48 (146)
T ss_pred cHHHhCCCEEEEEEECCCChhHHHHHHHHH
Confidence 344443455568899999999998775554
No 130
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=54.06 E-value=11 Score=26.69 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=18.1
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.+.|+..+||+|.+-+.++..
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~ 21 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAE 21 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHH
Confidence 378999999999999888764
No 131
>PTZ00062 glutaredoxin; Provisional
Probab=53.41 E-value=16 Score=33.35 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=27.0
Q ss_pred hHHHHHHHhccccceeecc-----ccChhhHHHHHhHHhh
Q 022610 255 FALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQVLHQS 289 (294)
Q Consensus 255 ~~~~la~~L~~~ga~~yga-----~wCp~C~~Qk~lfg~~ 289 (294)
....+.+..++...++|.- .+||+|++-|++|-+.
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~ 141 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS 141 (204)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc
Confidence 4455667777778888844 5999999999999763
No 132
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=52.64 E-value=10 Score=33.29 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=17.3
Q ss_pred ccceeeccccChhhHHHHHhHHh
Q 022610 266 IGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 266 ~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
.=..+|-+.|||.|.++..-+.+
T Consensus 76 ~vvl~F~atwCp~C~~~lp~l~~ 98 (189)
T TIGR02661 76 PTLLMFTAPSCPVCDKLFPIIKS 98 (189)
T ss_pred EEEEEEECCCChhHHHHHHHHHH
Confidence 34567789999999988665544
No 133
>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=52.32 E-value=94 Score=33.42 Aligned_cols=65 Identities=17% Similarity=0.437 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCC--CCCC--CCCCCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 022610 67 AGIGGVGFLETTYLSYLKLTNSD--AFCP--IGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (294)
Q Consensus 67 l~La~iGll~S~YLt~~kl~~~~--~~C~--i~~~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~ 132 (294)
-+++..|++.++++.+.-++.++ ..=| ..+-+=..+|+ .++-++--|+-+.|-++|.+....+++
T Consensus 124 ~vlavlgli~~~f~~fil~~snPF~r~~p~~~eGrgLNPlLQ-d~gli~HPPllYlGYvgfsV~fs~avA 192 (648)
T COG1138 124 RVLAVLGLITAGFLLFILFTSNPFTRLFPVPPEGRGLNPLLQ-DPGLIFHPPLLYLGYVGFSVAFSVAVA 192 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCCCChhhh-CcccccCCcchhhhHHHHHHHHHHHHH
Confidence 35666777777777776655322 1111 11245667888 889999999999999999998888776
No 134
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=51.94 E-value=11 Score=31.64 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=22.3
Q ss_pred HHHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
..+|+++-.+.=..+|-|.||| |.++-..+-+
T Consensus 14 ~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 14 PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHH
Confidence 4567776555555778899999 9886555443
No 135
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=47.79 E-value=15 Score=24.77 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=17.2
Q ss_pred eeeccccChhhHHHHHhHHh
Q 022610 269 KMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 269 ~~yga~wCp~C~~Qk~lfg~ 288 (294)
++|+..+||.|.+-+.++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~ 21 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEE 21 (71)
T ss_pred EEEeCCCCccHHHHHHHHHH
Confidence 68999999999998887754
No 136
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=47.29 E-value=14 Score=29.79 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=20.7
Q ss_pred HHHHHHhccccceeec-cccChhhHHHHHhHHh
Q 022610 257 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 257 ~~la~~L~~~ga~~yg-a~wCp~C~~Qk~lfg~ 288 (294)
..|++.-.+.-..++. ++|||.|.+|-+-+.+
T Consensus 16 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~ 48 (140)
T cd03017 16 VSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRD 48 (140)
T ss_pred EeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHH
Confidence 4555544444455555 6999999987666544
No 137
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=45.65 E-value=18 Score=26.85 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=17.7
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.+.|+..+||+|++-+.....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred ceEecCCCCchHHHHHHHHHH
Confidence 378999999999999886653
No 138
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=45.33 E-value=15 Score=30.49 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=20.4
Q ss_pred HHHHHHHhccccce-eeccccChhhHHHHHhHHh
Q 022610 256 ALSLAKHLHAIGAK-MYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 256 ~~~la~~L~~~ga~-~yga~wCp~C~~Qk~lfg~ 288 (294)
...|+..-.+.-.. ++..+|||.|..|..-|-+
T Consensus 22 ~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~ 55 (154)
T PRK09437 22 QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRD 55 (154)
T ss_pred EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHH
Confidence 45676643333333 4456899999887665543
No 139
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=45.33 E-value=6.1 Score=37.42 Aligned_cols=11 Identities=27% Similarity=1.135 Sum_probs=9.3
Q ss_pred eccccChhhHH
Q 022610 271 YGAFWCSHCLE 281 (294)
Q Consensus 271 yga~wCp~C~~ 281 (294)
-+.||||+||+
T Consensus 272 R~t~~CP~CQ~ 282 (282)
T PRK13945 272 RSTHWCPNCQK 282 (282)
T ss_pred CccEECCCCcC
Confidence 57899999974
No 140
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=43.16 E-value=17 Score=31.05 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=22.2
Q ss_pred hHHHHHHHhccccc-eeeccccChhhHHHHHhHHh
Q 022610 255 FALSLAKHLHAIGA-KMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 255 ~~~~la~~L~~~ga-~~yga~wCp~C~~Qk~lfg~ 288 (294)
....|.+...+.-. .+|.+.|||+|..|-.-|-+
T Consensus 20 ~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 20 KEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred eEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHH
Confidence 34566665443333 44558999999998777654
No 141
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=42.82 E-value=22 Score=25.90 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=18.1
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
.+.|+...||.|++-+..+..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHH
Confidence 578999999999999987754
No 142
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=42.63 E-value=25 Score=27.90 Aligned_cols=36 Identities=8% Similarity=-0.271 Sum_probs=28.2
Q ss_pred hhHHHHHHHhccccceeeccccChhhHHHH-HhHHhh
Q 022610 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQK-QVLHQS 289 (294)
Q Consensus 254 ~~~~~la~~L~~~ga~~yga~wCp~C~~Qk-~lfg~~ 289 (294)
+++++.|++=++.=.++.-+.||+.|+..+ +.|-.+
T Consensus 7 ~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~ 43 (114)
T cd02958 7 EDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNE 43 (114)
T ss_pred HHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCH
Confidence 467778887777778899999999999975 466554
No 143
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=42.28 E-value=7.5 Score=36.69 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=9.5
Q ss_pred eccccChhhHH
Q 022610 271 YGAFWCSHCLE 281 (294)
Q Consensus 271 yga~wCp~C~~ 281 (294)
-+.||||.||+
T Consensus 262 R~t~~CP~CQ~ 272 (272)
T PRK14810 262 RSSHYCPHCQK 272 (272)
T ss_pred CccEECcCCcC
Confidence 67899999984
No 144
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=41.05 E-value=24 Score=26.31 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=15.9
Q ss_pred eeeccccChhhHHHHHhHHhhh
Q 022610 269 KMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 269 ~~yga~wCp~C~~Qk~lfg~~a 290 (294)
+.|++. ||+|.+.+++.-+.+
T Consensus 4 ~v~~~~-C~~C~~~~~~~~~~~ 24 (76)
T PF13192_consen 4 KVFSPG-CPYCPELVQLLKEAA 24 (76)
T ss_dssp EEECSS-CTTHHHHHHHHHHHH
T ss_pred EEeCCC-CCCcHHHHHHHHHHH
Confidence 457666 999999988886543
No 145
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=40.70 E-value=4.7e+02 Score=27.74 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=28.9
Q ss_pred CCccccccccchhccCCchhHHHHHHHHHHHHHHHH
Q 022610 97 ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (294)
Q Consensus 97 ~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~ 132 (294)
.+=...|+|++=. +-+|..++|.++|++...+++.
T Consensus 106 ~~lnP~Lq~~~l~-iH~p~~~lgya~~~v~f~~a~~ 140 (576)
T TIGR00353 106 RDLNPMLQDPGLI-FHPPLLYMGYVGFSVAFAFALA 140 (576)
T ss_pred CCCCchhcCCChh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 3555678887655 8899999999999999988876
No 146
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=40.37 E-value=94 Score=24.45 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCC
Q 022610 210 VQLCIASLVVAALSTSYSSIQPLS 233 (294)
Q Consensus 210 ~~~~va~~~~~~l~~~y~~~~~~~ 233 (294)
..++.++.++++++++..++++..
T Consensus 46 ~~~v~~vl~iL~~~Gii~DPTT~G 69 (84)
T PF04531_consen 46 SNIVNAVLTILVILGIINDPTTKG 69 (84)
T ss_pred HHHHHHHHHHHHHheeeeCCCCCC
Confidence 344555666777777777754433
No 147
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=39.71 E-value=8.9 Score=36.17 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=9.9
Q ss_pred eccccChhhHHH
Q 022610 271 YGAFWCSHCLEQ 282 (294)
Q Consensus 271 yga~wCp~C~~Q 282 (294)
-+.||||+||.-
T Consensus 253 R~ty~Cp~CQ~~ 264 (269)
T PRK14811 253 RGTHFCPQCQPL 264 (269)
T ss_pred CCcEECCCCcCC
Confidence 568999999853
No 148
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=39.47 E-value=8 Score=36.55 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=17.8
Q ss_pred HHhccccceeeccccChhhHHHHH
Q 022610 261 KHLHAIGAKMYGAFWCSHCLEQKQ 284 (294)
Q Consensus 261 ~~L~~~ga~~yga~wCp~C~~Qk~ 284 (294)
.-|+-.=+.|++|.|||.|.+-+-
T Consensus 36 ~~l~gewmi~~~ap~~psc~~~~~ 59 (248)
T KOG0913|consen 36 ELLTGEWMIEFGAPWCPSCSDLIP 59 (248)
T ss_pred hhhchHHHHHhcCCCCccccchHH
Confidence 334444567999999999998654
No 149
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=38.97 E-value=31 Score=34.96 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=33.2
Q ss_pred ChhHHHHHHHh-ccccceeeccccChhhHHHHHhHHhhhhcC
Q 022610 253 SPFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQVLHQSLTYN 293 (294)
Q Consensus 253 ~~~~~~la~~L-~~~ga~~yga~wCp~C~~Qk~lfg~~a~~~ 293 (294)
++...+..+.| +....++|-.-.||+|-+-.+.+.+-|..|
T Consensus 104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~ 145 (517)
T PRK15317 104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN 145 (517)
T ss_pred CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC
Confidence 45566666777 467899999999999999999998877665
No 150
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.91 E-value=19 Score=32.38 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=15.0
Q ss_pred cccceeeccccChhhHH
Q 022610 265 AIGAKMYGAFWCSHCLE 281 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~ 281 (294)
+...+.|.+|-||||.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~ 101 (244)
T COG1651 85 PVTVVEFFDYTCPYCKE 101 (244)
T ss_pred CceEEEEecCcCccHHH
Confidence 78889999999999933
No 151
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=38.79 E-value=73 Score=25.63 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=15.0
Q ss_pred CCCCCCCCCCchhHHH-HHHHHHH--HHHHHHHHH
Q 022610 51 TPSPSSTSGFSPYGWC-AGIGGVG--FLETTYLSY 82 (294)
Q Consensus 51 ~~~~~~~~~~~~~~w~-l~La~iG--ll~S~YLt~ 82 (294)
+......++|+.+.-+ +.+-++| .++..|++-
T Consensus 21 ~~~~~~~~sp~W~~p~m~~lmllGL~WiVvyYi~~ 55 (87)
T PF06781_consen 21 PVKVKAKPSPRWYAPLMLGLMLLGLLWIVVYYISG 55 (87)
T ss_pred CccccCCCCCccHHHHHHHHHHHHHHHHhhhhccc
Confidence 3333335555555554 3333344 455566553
No 152
>PRK10445 endonuclease VIII; Provisional
Probab=38.20 E-value=9.6 Score=35.80 Aligned_cols=11 Identities=27% Similarity=1.065 Sum_probs=9.2
Q ss_pred eccccChhhHH
Q 022610 271 YGAFWCSHCLE 281 (294)
Q Consensus 271 yga~wCp~C~~ 281 (294)
-+.||||+||.
T Consensus 253 R~t~~CP~CQ~ 263 (263)
T PRK10445 253 RPFYWCPGCQK 263 (263)
T ss_pred CCcEECCCCcC
Confidence 57899999974
No 153
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=38.10 E-value=2.4e+02 Score=24.94 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHH
Q 022610 159 AAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFIS 195 (294)
Q Consensus 159 av~s~yLlyil~~~vI~alC~yC~~S~~isi~Lf~lt 195 (294)
.....+=+|+|... --+-|+-|+.--+..+.+.++.
T Consensus 24 ~~~~~~al~fq~i~-g~~PC~LC~~QR~~~~~~~~i~ 59 (170)
T COG1495 24 ALALLAALYFQYIL-GLEPCPLCLYQRIAMYGLGVIL 59 (170)
T ss_pred HHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHHH
Confidence 33334445667654 4689999999888877744433
No 154
>PRK01749 disulfide bond formation protein B; Provisional
Probab=37.77 E-value=2.7e+02 Score=24.62 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHH
Q 022610 166 LYILSTNFSGATCSYCLTSALLSFSLFF 193 (294)
Q Consensus 166 lyil~~~vI~alC~yC~~S~~isi~Lf~ 193 (294)
+|+|... --.-|+.|+.--..-+.+.+
T Consensus 30 l~~Q~~l-gl~PC~LCi~QR~~~~~l~l 56 (176)
T PRK01749 30 LYFQHVM-LLKPCVMCIYERVALFGILG 56 (176)
T ss_pred HHHHHHc-CCCCcHhHHHHHHHHHHHHH
Confidence 4667653 45899999987755554443
No 155
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=37.68 E-value=29 Score=29.18 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=25.6
Q ss_pred CChhHHHHHHHhccccceeeccccChhhHHHHHhHHhhhhcC
Q 022610 252 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQSLTYN 293 (294)
Q Consensus 252 s~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~~a~~~ 293 (294)
+.....+++..-++....-++..|||-|..+-=.|-|=|..|
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~ 70 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN 70 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC
Confidence 444455666666777889999999999999988887755433
No 156
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=37.59 E-value=26 Score=26.62 Aligned_cols=25 Identities=8% Similarity=-0.116 Sum_probs=20.4
Q ss_pred cceeeccccChhhHHHHHhHHhhhh
Q 022610 267 GAKMYGAFWCSHCLEQKQVLHQSLT 291 (294)
Q Consensus 267 ga~~yga~wCp~C~~Qk~lfg~~a~ 291 (294)
=..+|.+.||++|.+-++.|.+=|.
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~ 39 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAK 39 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHH
Confidence 3567888999999999999987553
No 157
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.33 E-value=10 Score=35.79 Aligned_cols=10 Identities=30% Similarity=1.062 Sum_probs=8.6
Q ss_pred eccccChhhH
Q 022610 271 YGAFWCSHCL 280 (294)
Q Consensus 271 yga~wCp~C~ 280 (294)
=+.||||+||
T Consensus 263 R~t~~CP~CQ 272 (272)
T TIGR00577 263 RGTHFCPQCQ 272 (272)
T ss_pred CCCEECCCCC
Confidence 5689999996
No 158
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=37.30 E-value=42 Score=29.48 Aligned_cols=23 Identities=9% Similarity=-0.177 Sum_probs=19.1
Q ss_pred ceeeccccChhhHHHHHhHHhhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~a 290 (294)
++.|-+.||+.|+..+..|.+=|
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA 109 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLA 109 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHH
Confidence 56789999999999988887644
No 159
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=36.87 E-value=31 Score=24.53 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=17.8
Q ss_pred ceeeccccChhhHHHHHhHHh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~ 288 (294)
++.|+...||.|++-+.++..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~ 21 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAE 21 (73)
T ss_pred CEEEECCCChhHHHHHHHHHH
Confidence 478999999999999887754
No 160
>PRK02110 disulfide bond formation protein B; Provisional
Probab=36.63 E-value=2.3e+02 Score=24.96 Aligned_cols=27 Identities=15% Similarity=0.419 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHH
Q 022610 166 LYILSTNFSGATCSYCLTSALLSFSLFF 193 (294)
Q Consensus 166 lyil~~~vI~alC~yC~~S~~isi~Lf~ 193 (294)
+|+|... --.-|+.|+.--...+.+.+
T Consensus 30 l~~Q~~~-g~~PC~LCi~QR~~~~~i~l 56 (169)
T PRK02110 30 LYLQYVK-GEDPCPLCIIQRYAFLLIAI 56 (169)
T ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHHHH
Confidence 4666654 46899999987766555444
No 161
>PRK04388 disulfide bond formation protein B; Provisional
Probab=35.39 E-value=2.4e+02 Score=24.71 Aligned_cols=30 Identities=13% Similarity=0.323 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHHh
Q 022610 166 LYILSTNFSGATCSYCLTSALLSFSLFFISL 196 (294)
Q Consensus 166 lyil~~~vI~alC~yC~~S~~isi~Lf~ltl 196 (294)
+|+|... --.-|+.|+.--..-+.+.++.+
T Consensus 27 ly~Q~~~-gl~PC~LCi~QR~~~~~i~l~~l 56 (172)
T PRK04388 27 IFVQLHL-GLEPCPLCIFQRIAFAALALLFL 56 (172)
T ss_pred HHHHHHc-CCCCcHHHHHHHHHHHHHHHHHH
Confidence 4666553 45899999988766655554443
No 162
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=35.31 E-value=28 Score=27.87 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=19.2
Q ss_pred HHHHHHhcccccee-eccccChhhHHHHHhHHh
Q 022610 257 LSLAKHLHAIGAKM-YGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 257 ~~la~~L~~~ga~~-yga~wCp~C~~Qk~lfg~ 288 (294)
..|.+.-.+.=..+ +-+.|||.|.+|-.-+-+
T Consensus 15 ~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 15 VSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred EehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHH
Confidence 34444433333444 447899999998665543
No 163
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=34.48 E-value=57 Score=34.00 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=18.7
Q ss_pred cccceeeccccChhhHHHHHhHHh
Q 022610 265 AIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 265 ~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
+.=.+.+-|.|||.|.++...+-+
T Consensus 57 KpVvV~FWATWCppCk~emP~L~e 80 (521)
T PRK14018 57 KPTLIKFWASWCPLCLSELGETEK 80 (521)
T ss_pred CEEEEEEEcCCCHHHHHHHHHHHH
Confidence 344678889999999998766654
No 164
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=34.05 E-value=29 Score=29.22 Aligned_cols=14 Identities=36% Similarity=1.132 Sum_probs=10.5
Q ss_pred ccccChhhHHHHHh
Q 022610 272 GAFWCSHCLEQKQV 285 (294)
Q Consensus 272 ga~wCp~C~~Qk~l 285 (294)
|-.|||-|.+-+-.
T Consensus 34 g~sWCPDC~~aep~ 47 (119)
T PF06110_consen 34 GQSWCPDCVAAEPV 47 (119)
T ss_dssp S-BSSHHHHHHHHH
T ss_pred CCcccHHHHHHHHH
Confidence 56899999987733
No 165
>PRK06265 cobalt transport protein CbiM; Validated
Probab=33.98 E-value=74 Score=28.59 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHhhccchHHHHH
Q 022610 181 CLTSALLSFSLFFISLKEFSVEEIQK 206 (294)
Q Consensus 181 C~~S~~isi~Lf~ltl~~~~~~d~~q 206 (294)
|...|+++++++....++.+|++.+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (199)
T PRK06265 13 LAGGWVIAAAGVALGLRRLDEERIPL 38 (199)
T ss_pred HHHHHHHHHHHHHHHHHHcCcchhHH
Confidence 34444444444444444444444333
No 166
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=32.73 E-value=27 Score=32.50 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=14.4
Q ss_pred eeeccccChhhHHHHHhH
Q 022610 269 KMYGAFWCSHCLEQKQVL 286 (294)
Q Consensus 269 ~~yga~wCp~C~~Qk~lf 286 (294)
..|.++-||+|++-++-.
T Consensus 122 ~vFtDp~CpyC~kl~~~l 139 (251)
T PRK11657 122 YVFADPNCPYCKQFWQQA 139 (251)
T ss_pred EEEECCCChhHHHHHHHH
Confidence 478999999999876543
No 167
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.70 E-value=28 Score=33.93 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=26.3
Q ss_pred HHHHHHhccccceeeccccChhhHHHHHhHHh
Q 022610 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 257 ~~la~~L~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
.....+-.+...++|=+.||.||++....|.+
T Consensus 40 ~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~ 71 (383)
T KOG0191|consen 40 FDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKK 71 (383)
T ss_pred HHHhhccCCceEEEEECCCCcchhhhchHHHH
Confidence 34555667778899999999999999988874
No 168
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=32.43 E-value=46 Score=29.56 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=25.8
Q ss_pred ChhHHHHHHHhccccceeeccccChhhHHHH-HhHHhh
Q 022610 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQK-QVLHQS 289 (294)
Q Consensus 253 ~~~~~~la~~L~~~ga~~yga~wCp~C~~Qk-~lfg~~ 289 (294)
++++.+.||.-.+.=-...|..||.-||.-. |-|-..
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~ 63 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDP 63 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-H
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCH
Confidence 5678899999888888899999999999655 466543
No 169
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=31.86 E-value=33 Score=36.31 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=17.0
Q ss_pred eeeccccChhhHHHHHhHHhhh
Q 022610 269 KMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 269 ~~yga~wCp~C~~Qk~lfg~~a 290 (294)
+.|=+.||+||+.-+--|.|=|
T Consensus 62 VEFy~swCGhCr~FAPtfk~~A 83 (606)
T KOG1731|consen 62 VEFYNSWCGHCRAFAPTFKKFA 83 (606)
T ss_pred HHHHHhhhhhhhhcchHHHHHH
Confidence 5566889999999887776643
No 170
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=30.70 E-value=6.8e+02 Score=26.63 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=42.4
Q ss_pred CCccccccccchhccCCchhHHHHHHHHHHHHHHHH-hccccCCccccchhhHHHHHH---HHHHHHHHHHHHHHH
Q 022610 97 ASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL-LARKSFPIGINESYGRLILLG---SSTSMAAASAYFLYI 168 (294)
Q Consensus 97 ~sC~~VL~S~yA~vfGiPnsllGllaY~~v~~Lal~-~~~~~l~~~l~~~~~rw~ll~---ls~~mav~s~yLlyi 168 (294)
.+=...|+++|-. +-.|..++|.++|++...+++. +..+++.+.+++...||..++ +++++.. -++|.|.
T Consensus 160 ~~LnP~Lq~~wl~-iHpp~l~lgYa~~~v~fa~a~~~Ll~~~~~~~~~~~~~~~~~~gw~fLT~GI~l-G~~WAy~ 233 (571)
T PRK10369 160 RDLNPMLQHPGLI-FHPPLLYLGYGGLMVAASVALASLLRGEFDAACARICWRWALPGWSALTAGIIL-GSWWAYC 233 (571)
T ss_pred CCCCchhcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcc
Confidence 4455678888766 7789999999999988888775 333433333333344553333 3333333 3455554
No 171
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.23 E-value=42 Score=26.79 Aligned_cols=20 Identities=25% Similarity=0.695 Sum_probs=18.6
Q ss_pred eeeccccChhhHHHHHhHHh
Q 022610 269 KMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 269 ~~yga~wCp~C~~Qk~lfg~ 288 (294)
++||+--||.|..-+|-|-+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~r 24 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLER 24 (85)
T ss_pred eeeccccCcchHHHHHHHHH
Confidence 79999999999999998875
No 172
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=29.10 E-value=39 Score=29.01 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=21.7
Q ss_pred HHHHHHHhccccc-eeeccccChhhHHHHHhHHhh
Q 022610 256 ALSLAKHLHAIGA-KMYGAFWCSHCLEQKQVLHQS 289 (294)
Q Consensus 256 ~~~la~~L~~~ga-~~yga~wCp~C~~Qk~lfg~~ 289 (294)
.+.|++.-.+.-. .+|-.||||.|.+|..-|-+.
T Consensus 36 ~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~ 70 (167)
T PRK00522 36 DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQE 70 (167)
T ss_pred EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHH
Confidence 4567764333223 456666699999998777653
No 173
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=28.41 E-value=47 Score=37.31 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=22.2
Q ss_pred HHHHH-HHhccccceeeccccChhhHHHHHhHHh
Q 022610 256 ALSLA-KHLHAIGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 256 ~~~la-~~L~~~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
.+.+. .+-.+.=...+-|.|||.|+++...+.+
T Consensus 411 ~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~ 444 (1057)
T PLN02919 411 PLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEF 444 (1057)
T ss_pred cccchhhcCCCEEEEEEECCcChhHHhHhHHHHH
Confidence 34443 3334555788999999999986666543
No 174
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=28.19 E-value=31 Score=28.72 Aligned_cols=24 Identities=4% Similarity=-0.186 Sum_probs=17.1
Q ss_pred HHHHHHhcccc---ceeeccccCh--hhH
Q 022610 257 LSLAKHLHAIG---AKMYGAFWCS--HCL 280 (294)
Q Consensus 257 ~~la~~L~~~g---a~~yga~wCp--~C~ 280 (294)
..+-+.+++.. .++|-++||+ ||.
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck 45 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEPVESDKEAQK 45 (120)
T ss_pred hhHHHHHHhCCceEEEEECCCcCChhhCh
Confidence 34555565555 4899999994 798
No 175
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=28.07 E-value=50 Score=26.49 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=21.6
Q ss_pred HHHHHHhccccceeeccccChh-hHHHHHhHHh
Q 022610 257 LSLAKHLHAIGAKMYGAFWCSH-CLEQKQVLHQ 288 (294)
Q Consensus 257 ~~la~~L~~~ga~~yga~wCp~-C~~Qk~lfg~ 288 (294)
..|.+.=.+.-...+.+.|||. |.++-..+.+
T Consensus 15 ~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 15 VTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EchHHhCCCEEEEEEEcCCCcccCHHHHHHHHH
Confidence 4555543445567788899997 9877665544
No 176
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=27.86 E-value=3.4e+02 Score=25.22 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHHh
Q 022610 166 LYILSTNFSGATCSYCLTSALLSFSLFFISL 196 (294)
Q Consensus 166 lyil~~~vI~alC~yC~~S~~isi~Lf~ltl 196 (294)
+|+|... -=+-|+.|+.--+..+.+.+..+
T Consensus 42 ~yfQ~vl-gL~PC~LCIyQR~a~l~i~l~gL 71 (218)
T PRK04307 42 SFFQIYL-YMAPCEQCVYIRFAMFVMAIGGV 71 (218)
T ss_pred HHHHHhc-CCCccHHHHHHHHHHHHHHHHHH
Confidence 3667653 45899999988866665554443
No 177
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.99 E-value=34 Score=33.37 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=17.7
Q ss_pred ceeeccccChhhHHHHHhHHhhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQSL 290 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~a 290 (294)
-+++-|.||+||++.+..+-+-+
T Consensus 166 lv~f~aPwc~~ck~l~~~~~~~a 188 (383)
T KOG0191|consen 166 LVEFYAPWCGHCKKLAPEWEKLA 188 (383)
T ss_pred EEEEeccccHHhhhcChHHHHHH
Confidence 46677899999999976665543
No 178
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.82 E-value=44 Score=32.64 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=25.6
Q ss_pred CCChhHHHHHHHhcc-ccceeeccccChhhHHHHHhHHh
Q 022610 251 SSSPFALSLAKHLHA-IGAKMYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 251 ~s~~~~~~la~~L~~-~ga~~yga~wCp~C~~Qk~lfg~ 288 (294)
++.-.+..+=+.-++ -=.+.++|.||++|.+-+...-|
T Consensus 29 T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lek 67 (304)
T COG3118 29 TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEK 67 (304)
T ss_pred hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHH
Confidence 334444444444444 33478999999999998887766
No 179
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=26.79 E-value=47 Score=30.48 Aligned_cols=19 Identities=11% Similarity=0.457 Sum_probs=15.3
Q ss_pred eeeccccChhhHHHHHhHH
Q 022610 269 KMYGAFWCSHCLEQKQVLH 287 (294)
Q Consensus 269 ~~yga~wCp~C~~Qk~lfg 287 (294)
..|.++-||+|++-++-.-
T Consensus 112 ~vFtDp~CpyCkkl~~~l~ 130 (232)
T PRK10877 112 TVFTDITCGYCHKLHEQMK 130 (232)
T ss_pred EEEECCCChHHHHHHHHHH
Confidence 4788999999998776544
No 180
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=26.42 E-value=67 Score=32.61 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=32.9
Q ss_pred ChhHHHHHHHh-ccccceeeccccChhhHHHHHhHHhhhhcC
Q 022610 253 SPFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQVLHQSLTYN 293 (294)
Q Consensus 253 ~~~~~~la~~L-~~~ga~~yga~wCp~C~~Qk~lfg~~a~~~ 293 (294)
++..++..+.| +....+.|-..-||+|-+-++.+.+-|..|
T Consensus 105 ~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~ 146 (515)
T TIGR03140 105 DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN 146 (515)
T ss_pred CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 44566666777 567899999999999999999998777654
No 181
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=26.12 E-value=25 Score=30.02 Aligned_cols=11 Identities=55% Similarity=1.286 Sum_probs=9.0
Q ss_pred ceeeccccChh
Q 022610 268 AKMYGAFWCSH 278 (294)
Q Consensus 268 a~~yga~wCp~ 278 (294)
..||||.||--
T Consensus 93 stmygapwcdi 103 (159)
T PF14673_consen 93 STMYGAPWCDI 103 (159)
T ss_pred ccccCCCccce
Confidence 46999999963
No 182
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.62 E-value=41 Score=28.95 Aligned_cols=22 Identities=23% Similarity=0.742 Sum_probs=16.0
Q ss_pred cceeecc-------ccChhhHHHHHhHHh
Q 022610 267 GAKMYGA-------FWCSHCLEQKQVLHQ 288 (294)
Q Consensus 267 ga~~yga-------~wCp~C~~Qk~lfg~ 288 (294)
=+.|||+ .|||.|..-..++-+
T Consensus 29 fvlF~gskd~~tGqSWCPdCV~AEPvi~~ 57 (128)
T KOG3425|consen 29 FVLFLGSKDDTTGQSWCPDCVAAEPVINE 57 (128)
T ss_pred EEEEecccCCCCCCcCCchHHHhhHHHHH
Confidence 3456655 599999988777754
No 183
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=25.58 E-value=55 Score=23.36 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=16.7
Q ss_pred ceeeccccChhhHHHHHhHH
Q 022610 268 AKMYGAFWCSHCLEQKQVLH 287 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg 287 (294)
.+.|+...||+|.+-+.+..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~ 20 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAK 20 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHH
Confidence 37899999999998877664
No 184
>PLN02412 probable glutathione peroxidase
Probab=25.43 E-value=49 Score=28.42 Aligned_cols=31 Identities=16% Similarity=-0.007 Sum_probs=19.5
Q ss_pred HHHHHHHhccccceeeccccChhhHHHHHhH
Q 022610 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQVL 286 (294)
Q Consensus 256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~lf 286 (294)
.++|++.-.+.=..+|=+.|||.|.++..-|
T Consensus 21 ~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l 51 (167)
T PLN02412 21 DVSLNQYKGKVLLIVNVASKCGLTDSNYKEL 51 (167)
T ss_pred EEeHHHhCCCEEEEEEeCCCCCChHHHHHHH
Confidence 4567655333333556699999999754433
No 185
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=24.79 E-value=2.2e+02 Score=23.00 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=12.1
Q ss_pred CCCCCchhHHH-HHH--HHHHHHHHHHHH
Q 022610 56 STSGFSPYGWC-AGI--GGVGFLETTYLS 81 (294)
Q Consensus 56 ~~~~~~~~~w~-l~L--a~iGll~S~YLt 81 (294)
..++|+.+.-+ +.+ -++-.++..||+
T Consensus 26 ~~~sp~W~~~~m~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 26 AGPSSVWYVVLMLGLMLIGLAWLVVNYLA 54 (87)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455545443 222 234445666664
No 186
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=24.18 E-value=25 Score=34.43 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCccch
Q 022610 165 FLYILSTNFSGATCSY 180 (294)
Q Consensus 165 Llyil~~~vI~alC~y 180 (294)
.+.||.|+. +-+||.
T Consensus 66 IiIImlF~R-rLLCPL 80 (381)
T PF05297_consen 66 IIIIMLFKR-RLLCPL 80 (381)
T ss_dssp ----------------
T ss_pred HHHHHHHHH-hhcCcc
Confidence 345566663 667764
No 187
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=24.16 E-value=53 Score=27.38 Aligned_cols=29 Identities=17% Similarity=0.089 Sum_probs=21.0
Q ss_pred HHHHHHHhccccceeeccccChhhHHHHH
Q 022610 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQ 284 (294)
Q Consensus 256 ~~~la~~L~~~ga~~yga~wCp~C~~Qk~ 284 (294)
.+.|++.-.+.=..++-|.|||.|.+...
T Consensus 14 ~~~l~~~~Gk~vvv~~~as~C~~c~~~~~ 42 (153)
T TIGR02540 14 TVSLEKYRGKVSLVVNVASECGFTDQNYR 42 (153)
T ss_pred EecHHHhCCCEEEEEEeCCCCCchhhhHH
Confidence 45677766555457889999999976543
No 188
>PF13728 TraF: F plasmid transfer operon protein
Probab=23.40 E-value=81 Score=28.74 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=22.0
Q ss_pred HHHHHhccccceeeccccChhhHHHHHhHH
Q 022610 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQVLH 287 (294)
Q Consensus 258 ~la~~L~~~ga~~yga~wCp~C~~Qk~lfg 287 (294)
.|.+.=++-|-.++-...||+|++|....-
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~ 143 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQ 143 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHH
Confidence 344444566778888889999999987654
No 189
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=21.81 E-value=44 Score=31.69 Aligned_cols=20 Identities=15% Similarity=0.178 Sum_probs=16.2
Q ss_pred ccccceeeccccChhhHHHH
Q 022610 264 HAIGAKMYGAFWCSHCLEQK 283 (294)
Q Consensus 264 ~~~ga~~yga~wCp~C~~Qk 283 (294)
.+....+=|++|||.|....
T Consensus 58 Gk~~v~~igw~gCP~~A~~s 77 (249)
T PF06053_consen 58 GKPEVIFIGWEGCPYCAAES 77 (249)
T ss_pred CeeEEEEEecccCccchhhH
Confidence 45667888999999998765
No 190
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=21.76 E-value=62 Score=28.34 Aligned_cols=31 Identities=10% Similarity=0.016 Sum_probs=19.3
Q ss_pred HHHHHHhccccceee-ccccChhhHHHHHhHH
Q 022610 257 LSLAKHLHAIGAKMY-GAFWCSHCLEQKQVLH 287 (294)
Q Consensus 257 ~~la~~L~~~ga~~y-ga~wCp~C~~Qk~lfg 287 (294)
+.+++.-.+.-..++ -+.|||.|.+|-.-|-
T Consensus 24 ~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~ 55 (187)
T TIGR03137 24 VTDEDVKGKWSVFFFYPADFTFVCPTELEDLA 55 (187)
T ss_pred ecHHHHCCCEEEEEEECCCcCCcCHHHHHHHH
Confidence 445544444434433 3899999999775554
No 191
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=21.49 E-value=26 Score=34.11 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=28.5
Q ss_pred CChhHHHHHHHhccccc------e------eeccccChhhHHHHHhHHh
Q 022610 252 SSPFALSLAKHLHAIGA------K------MYGAFWCSHCLEQKQVLHQ 288 (294)
Q Consensus 252 s~~~~~~la~~L~~~ga------~------~yga~wCp~C~~Qk~lfg~ 288 (294)
++|+..+|..--++++. . .-.-|-||||.+-.+.|++
T Consensus 189 TTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~ 237 (300)
T KOG3022|consen 189 TTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGS 237 (300)
T ss_pred eCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccC
Confidence 46888888776666553 2 2357999999999999998
No 192
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=21.15 E-value=97 Score=31.87 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=29.9
Q ss_pred ChhHHHHHHHh-ccccceeeccccChhhHHHHHhHHhhhhcC
Q 022610 253 SPFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQVLHQSLTYN 293 (294)
Q Consensus 253 ~~~~~~la~~L-~~~ga~~yga~wCp~C~~Qk~lfg~~a~~~ 293 (294)
++..++..+.| +....+.|=..+||+|-+-.+..-+-|..|
T Consensus 464 ~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~ 505 (555)
T TIGR03143 464 GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN 505 (555)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC
Confidence 33445555566 456789999999999999888887666554
No 193
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=41 Score=34.88 Aligned_cols=28 Identities=25% Similarity=0.480 Sum_probs=20.7
Q ss_pred ccccceeeccccChhhHHHHHhHHhhhh
Q 022610 264 HAIGAKMYGAFWCSHCLEQKQVLHQSLT 291 (294)
Q Consensus 264 ~~~ga~~yga~wCp~C~~Qk~lfg~~a~ 291 (294)
++.=.++|=|.||.||.+-..=|-+.|.
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~ 69 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAAT 69 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHH
Confidence 3344578889999999987776666554
No 194
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.28 E-value=83 Score=25.60 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=20.3
Q ss_pred ceeeccccChhhHHHHHhHHhhhh
Q 022610 268 AKMYGAFWCSHCLEQKQVLHQSLT 291 (294)
Q Consensus 268 a~~yga~wCp~C~~Qk~lfg~~a~ 291 (294)
...|-|.||+-|..-+-+|.+=|.
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~ 48 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAE 48 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHH
Confidence 567899999999999999987443
Done!