BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022611
MAAATLSVRPNRLSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLSRRTLAASG
VAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAA
YDMLLMRSLTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTGD
LGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKAA
VITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR

High Scoring Gene Products

Symbol, full name Information P value
AT2G20920 protein from Arabidopsis thaliana 1.4e-78
AT3G51140 protein from Arabidopsis thaliana 0.00035

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022611
        (294 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2051462 - symbol:AT2G20920 species:3702 "Arabi...   790  1.4e-78   1
TAIR|locus:2080883 - symbol:AT3G51140 "AT3G51140" species...   113  0.00035   1


>TAIR|locus:2051462 [details] [associations]
            symbol:AT2G20920 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM] [GO:0016020 "membrane"
            evidence=IDA] [GO:0015996 "chlorophyll catabolic process"
            evidence=RCA] EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
            EMBL:AC006234 InterPro:IPR021788 Pfam:PF11833 EMBL:AY069895
            EMBL:AY124817 IPI:IPI00531194 PIR:H84594 RefSeq:NP_179688.1
            UniGene:At.28149 ProteinModelPortal:Q9SKS8 SMR:Q9SKS8 IntAct:Q9SKS8
            STRING:Q9SKS8 PaxDb:Q9SKS8 PRIDE:Q9SKS8 EnsemblPlants:AT2G20920.1
            GeneID:816626 KEGG:ath:AT2G20920 TAIR:At2g20920 eggNOG:NOG12308
            HOGENOM:HOG000264943 InParanoid:Q9SKS8 OMA:QVDIVPF PhylomeDB:Q9SKS8
            ProtClustDB:CLSN2683558 ArrayExpress:Q9SKS8 Genevestigator:Q9SKS8
            Uniprot:Q9SKS8
        Length = 287

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 187/304 (61%), Positives = 214/304 (70%)

Query:     1 MAAATLSV-RPNRLSPGSQ-IPRPPAVHHLNPTCHPTPLK-PT-KSELFRGLTSL--SRR 54
             MA A LS  RPNRLS  S  +P       L+P   PT L+ P+ K++L+R    L  +RR
Sbjct:     1 MATAALSAARPNRLSSASSDVP-------LHPLYLPTKLQFPSRKTQLWRSAAILLPTRR 53

Query:    55 TLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAI 114
               A     +A SRADDS PF+MSVE ALK+LGVSE ASFDEILRAK SI+A+ KDD  AI
Sbjct:    54 RCAPP---RASSRADDSPPFDMSVETALKVLGVSEGASFDEILRAKKSILASRKDDPNAI 110

Query:   115 AQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADV---NPVGTPGMGPMPQWLQTSLKKSTV 171
             +Q EAAYDMLLM+SL QRRAGKVV ++IRYADV   NP+GT     + QW+    K   V
Sbjct:   111 SQAEAAYDMLLMQSLNQRRAGKVVSNNIRYADVKSSNPLGT---STVTQWM----KNPPV 163

Query:   172 SVENPSTGDLGIQAGVYGALMVLTYVNGTS-TSSIAPYAGADVPGLILASSFGASLYFMT 230
             SV+ PST DLGIQAGVYGA+MVLTYVNG+S  SS  PYAGADVPGLILASSFGASLYFMT
Sbjct:   164 SVDMPSTSDLGIQAGVYGAMMVLTYVNGSSFESSGMPYAGADVPGLILASSFGASLYFMT 223

Query:   231 RKNVKLGKXXXXXXXXXXXXXXXXXXXENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVS 290
             +K VKLGK                   E WL VD+VPFLG+HSPAAVVSEFI+FSQFLVS
Sbjct:   224 KKKVKLGKAAALTAGGLVAGAVVGSAIETWLHVDVVPFLGLHSPAAVVSEFIVFSQFLVS 283

Query:   291 LYLR 294
             L LR
Sbjct:   284 LCLR 287


>TAIR|locus:2080883 [details] [associations]
            symbol:AT3G51140 "AT3G51140" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009706
            "chloroplast inner membrane" evidence=IDA] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
            metabolic process" evidence=RCA] [GO:0009073 "aromatic amino acid
            family biosynthetic process" evidence=RCA] [GO:0009658 "chloroplast
            organization" evidence=RCA] [GO:0009793 "embryo development ending
            in seed dormancy" evidence=RCA] [GO:0016226 "iron-sulfur cluster
            assembly" evidence=RCA] EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0009706 UniGene:At.859 EMBL:AY035099 EMBL:AY063061
            EMBL:AY086657 IPI:IPI00519499 RefSeq:NP_566946.1 UniGene:At.860
            ProteinModelPortal:Q94C78 SMR:Q94C78 STRING:Q94C78 PaxDb:Q94C78
            PRIDE:Q94C78 EnsemblPlants:AT3G51140.1 GeneID:824278
            KEGG:ath:AT3G51140 TAIR:At3g51140 eggNOG:NOG260359
            HOGENOM:HOG000243111 InParanoid:Q94C78 OMA:GAFIFSW PhylomeDB:Q94C78
            ProtClustDB:CLSN2689106 ArrayExpress:Q94C78 Genevestigator:Q94C78
            InterPro:IPR021788 Pfam:PF11833 Uniprot:Q94C78
        Length = 278

 Score = 113 (44.8 bits), Expect = 0.00035, P = 0.00035
 Identities = 26/85 (30%), Positives = 48/85 (56%)

Query:    62 AKAGSRADDSAPF--EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEA 119
             A  G  ADDSA     ++V++  K LG+S  AS DEI  A+N ++      + ++  +E+
Sbjct:    70 ASFGDMADDSAAIFPRINVKDPYKRLGISRMASEDEIQGARNFLIQQYAGHKPSVDAIES 129

Query:   120 AYDMLLMRSLTQRRAGKV-VDSSIR 143
             A+D ++M+   +R+  K+ +   +R
Sbjct:   130 AHDKIIMQKFHERKNPKIDISKKVR 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      294       275   0.00079  115 3  11 22  0.37    34
                                                     33  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  172 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.23u 0.10s 22.33t   Elapsed:  00:00:01
  Total cpu time:  22.23u 0.10s 22.33t   Elapsed:  00:00:01
  Start:  Fri May 10 08:20:17 2013   End:  Fri May 10 08:20:18 2013

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