BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022611
         (294 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
           Prolyl- Adenylate
 pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
           Prolyl- Adenylate
          Length = 518

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 46  RGLTSLSRRTLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAK----- 100
           R +    +R +  + V K  S   ++   E+ V+N +K     E  ++   L+ K     
Sbjct: 383 RDVGKDQKRVIPITEVMKVSSHTTEN--HELVVKNVIK----DELDAYKARLKEKAFAFH 436

Query: 101 NSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYA 145
           NS+V NCK   E +A +E    +      T    G+V D  ++ A
Sbjct: 437 NSMVTNCKSFDEIVACIENKGGLARFPFYTTEADGEVWDKKLKDA 481


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,488,151
Number of Sequences: 62578
Number of extensions: 260891
Number of successful extensions: 569
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 6
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)