BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022611
         (294 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q83CJ2|CBPA_COXBU Curved DNA-binding protein OS=Coxiella burnetii (strain RSA 493 /
           Nine Mile phase I) GN=cbpA PE=3 SV=1
          Length = 313

 Score = 35.8 bits (81), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 16/93 (17%)

Query: 76  MSVENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRS 128
           M  ++  K+LGVS  A+ DEI ++   +      D       +E   QV+ AY++L  + 
Sbjct: 1   MEYQDYYKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVL--KD 58

Query: 129 LTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQW 161
           + +R+A   + S  +          G  P P W
Sbjct: 59  VEKRKAYDAIGSGWKQGQ-------GFTPPPGW 84


>sp|A9NDK6|CBPA_COXBR Curved DNA-binding protein OS=Coxiella burnetii (strain RSA 331 /
           Henzerling II) GN=cbpA PE=3 SV=1
          Length = 313

 Score = 35.8 bits (81), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 16/93 (17%)

Query: 76  MSVENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRS 128
           M  ++  K+LGVS  A+ DEI ++   +      D       +E   QV+ AY++L  + 
Sbjct: 1   MEYQDYYKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVL--KD 58

Query: 129 LTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQW 161
           + +R+A   + S  +          G  P P W
Sbjct: 59  VEKRKAYDAIGSGWKQGQ-------GFTPPPGW 84


>sp|A9KE65|CBPA_COXBN Curved DNA-binding protein OS=Coxiella burnetii (strain Dugway
           5J108-111) GN=cbpA PE=3 SV=1
          Length = 313

 Score = 35.8 bits (81), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 16/93 (17%)

Query: 76  MSVENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRS 128
           M  ++  K+LGVS  A+ DEI ++   +      D       +E   QV+ AY++L  + 
Sbjct: 1   MEYQDYYKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVL--KD 58

Query: 129 LTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQW 161
           + +R+A   + S  +          G  P P W
Sbjct: 59  VEKRKAYDAIGSGWKQGQ-------GFTPPPGW 84


>sp|Q8L397|DNAJ_ACHLA Chaperone protein DnaJ OS=Acholeplasma laidlawii GN=dnaJ PE=3 SV=1
          Length = 369

 Score = 33.1 bits (74), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 7/56 (12%)

Query: 76  MSVENALKLLGVSETASFDEILRAKNSI-------VANCKDDQEAIAQVEAAYDML 124
           M+  +   +LG+S++AS DEI +A  S+       V+  KD +    +V+ AYD+L
Sbjct: 1   MAKRDYYDVLGISKSASQDEIKKAYRSLAKKYHPDVSKEKDAETKFKEVQEAYDVL 56


>sp|A6RUD7|CBPYA_BOTFB Carboxypeptidase Y homolog A OS=Botryotinia fuckeliana (strain
           B05.10) GN=CPYA PE=3 SV=1
          Length = 546

 Score = 32.7 bits (73), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 84  LLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAA-YDMLLMRSLTQRRAGKVVDSSI 142
           +LG SE  + D  L    S++ NC D +   + V A+ Y    M    QR    V D   
Sbjct: 328 VLGASECQAMDNALPRCQSLIQNCYDSESVWSCVPASIYCNNAMMGPYQRTGQNVYDVRG 387

Query: 143 RYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGA 190
           +  D + +    +G    W+   L K+ V  E      LG++   Y +
Sbjct: 388 KCEDTSNLCYSALG----WISEFLNKADVQKE------LGVEVSSYDS 425


>sp|Q9RUG2|DNAJ_DEIRA Chaperone protein DnaJ OS=Deinococcus radiodurans (strain ATCC
           13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
           NCIMB 9279 / R1 / VKM B-1422) GN=dnaJ PE=3 SV=2
          Length = 376

 Score = 31.2 bits (69), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 10/62 (16%)

Query: 80  NALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLTQR 132
           +  +LLGVS TAS DEI  A   +      D+       E  AQV  AY +L   S T++
Sbjct: 2   DYYELLGVSRTASADEIKSAYRKLALKLHPDRNKEEGAAEKFAQVSEAYSVL---SDTEK 58

Query: 133 RA 134
           RA
Sbjct: 59  RA 60


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,138,790
Number of Sequences: 539616
Number of extensions: 3957973
Number of successful extensions: 14334
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 14324
Number of HSP's gapped (non-prelim): 28
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)