Query 022611
Match_columns 294
No_of_seqs 174 out of 624
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:51:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11833 DUF3353: Protein of u 100.0 1.6E-59 3.6E-64 418.9 21.1 190 88-293 1-194 (194)
2 COG0484 DnaJ DnaJ-class molecu 99.2 1.6E-11 3.4E-16 119.8 6.2 56 76-131 1-64 (371)
3 PF00226 DnaJ: DnaJ domain; I 99.1 4.2E-10 9.2E-15 82.2 6.3 52 80-131 1-61 (64)
4 smart00271 DnaJ DnaJ molecular 99.0 3.3E-10 7E-15 81.3 5.5 48 79-126 1-57 (60)
5 PTZ00100 DnaJ chaperone protei 99.0 3.4E-10 7.3E-15 94.8 6.3 51 75-125 61-115 (116)
6 KOG0713 Molecular chaperone (D 99.0 2.8E-10 6.1E-15 109.6 5.8 56 76-131 13-76 (336)
7 PRK14296 chaperone protein Dna 99.0 3.6E-10 7.7E-15 109.9 6.5 56 76-131 1-63 (372)
8 PRK09430 djlA Dna-J like membr 99.0 4.6E-10 9.9E-15 104.9 6.2 55 74-128 195-264 (267)
9 cd06257 DnaJ DnaJ domain or J- 99.0 9.8E-10 2.1E-14 77.4 6.0 46 80-125 1-54 (55)
10 PRK14288 chaperone protein Dna 99.0 7.1E-10 1.5E-14 107.6 6.8 53 78-130 2-62 (369)
11 PRK14299 chaperone protein Dna 99.0 7.8E-10 1.7E-14 104.0 6.8 56 76-131 1-63 (291)
12 PRK14276 chaperone protein Dna 99.0 7E-10 1.5E-14 107.9 6.6 56 76-131 1-63 (380)
13 PRK14286 chaperone protein Dna 99.0 8.7E-10 1.9E-14 107.1 7.0 56 76-131 1-64 (372)
14 PTZ00037 DnaJ_C chaperone prot 99.0 7.6E-10 1.6E-14 109.5 6.2 56 75-130 24-83 (421)
15 PRK14282 chaperone protein Dna 98.9 9.3E-10 2E-14 106.6 6.1 56 76-131 1-65 (369)
16 PRK14287 chaperone protein Dna 98.9 1.1E-09 2.3E-14 106.4 6.5 56 76-131 1-63 (371)
17 KOG0721 Molecular chaperone (D 98.9 2.1E-09 4.6E-14 98.5 8.0 58 74-131 94-159 (230)
18 PRK14280 chaperone protein Dna 98.9 1.6E-09 3.5E-14 105.3 6.8 57 76-132 1-64 (376)
19 PRK10767 chaperone protein Dna 98.9 1.9E-09 4.1E-14 104.3 6.8 56 76-131 1-64 (371)
20 PRK14283 chaperone protein Dna 98.9 1.7E-09 3.7E-14 105.1 6.5 55 76-130 2-63 (378)
21 PRK14279 chaperone protein Dna 98.9 2E-09 4.2E-14 105.4 6.3 57 75-131 5-69 (392)
22 PRK14300 chaperone protein Dna 98.9 2.7E-09 5.8E-14 103.6 7.1 54 79-132 3-63 (372)
23 PRK14294 chaperone protein Dna 98.9 3.1E-09 6.6E-14 102.9 7.1 57 76-132 1-65 (366)
24 PRK14295 chaperone protein Dna 98.9 2.5E-09 5.4E-14 104.5 6.3 52 77-128 7-66 (389)
25 PRK14285 chaperone protein Dna 98.9 2.5E-09 5.4E-14 103.7 5.9 52 78-129 2-61 (365)
26 PRK14297 chaperone protein Dna 98.9 2.9E-09 6.3E-14 103.5 6.0 55 76-130 1-63 (380)
27 PRK14301 chaperone protein Dna 98.9 3.8E-09 8.2E-14 102.7 6.7 53 76-128 1-61 (373)
28 PRK14298 chaperone protein Dna 98.9 3.7E-09 8.1E-14 103.0 6.6 54 78-131 4-64 (377)
29 PRK14277 chaperone protein Dna 98.9 3.7E-09 7.9E-14 103.1 6.5 55 78-132 4-66 (386)
30 PRK10266 curved DNA-binding pr 98.8 5.3E-09 1.2E-13 98.9 7.1 53 76-128 1-60 (306)
31 PRK14278 chaperone protein Dna 98.8 3.9E-09 8.6E-14 102.7 6.1 52 79-130 3-61 (378)
32 PRK14291 chaperone protein Dna 98.8 5.9E-09 1.3E-13 101.6 6.6 53 78-130 2-61 (382)
33 PRK14289 chaperone protein Dna 98.8 7E-09 1.5E-13 101.0 6.7 56 76-131 2-65 (386)
34 PRK14281 chaperone protein Dna 98.8 7.3E-09 1.6E-13 101.5 6.9 53 78-130 2-62 (397)
35 PRK14284 chaperone protein Dna 98.7 1.6E-08 3.4E-13 98.9 6.5 55 79-135 1-63 (391)
36 PRK14290 chaperone protein Dna 98.7 1.7E-08 3.7E-13 97.7 6.2 52 79-130 3-63 (365)
37 TIGR02349 DnaJ_bact chaperone 98.7 1.9E-08 4.2E-13 96.6 6.5 50 80-129 1-57 (354)
38 PRK14293 chaperone protein Dna 98.7 2.7E-08 5.8E-13 96.7 6.9 54 78-131 2-62 (374)
39 KOG0715 Molecular chaperone (D 98.7 2.4E-08 5.3E-13 94.5 6.3 53 75-127 39-98 (288)
40 PRK14292 chaperone protein Dna 98.7 3E-08 6.4E-13 96.1 6.2 51 79-129 2-59 (371)
41 PHA03102 Small T antigen; Revi 98.6 6.1E-08 1.3E-12 84.7 6.2 55 78-132 4-64 (153)
42 KOG0712 Molecular chaperone (D 98.6 5.8E-08 1.2E-12 94.1 5.0 52 77-128 2-58 (337)
43 COG2214 CbpA DnaJ-class molecu 98.6 1.2E-07 2.5E-12 80.2 5.9 56 77-132 4-68 (237)
44 KOG0717 Molecular chaperone (D 98.3 6.6E-07 1.4E-11 89.7 5.1 51 78-128 7-66 (508)
45 PTZ00341 Ring-infected erythro 98.3 1E-06 2.2E-11 94.9 6.9 62 71-132 564-633 (1136)
46 KOG0719 Molecular chaperone (D 98.3 1.7E-06 3.6E-11 80.7 6.4 60 78-137 13-84 (264)
47 TIGR03835 termin_org_DnaJ term 98.3 1.3E-06 2.8E-11 92.2 6.2 54 79-132 2-62 (871)
48 KOG0691 Molecular chaperone (D 98.2 2.5E-06 5.4E-11 81.6 6.1 55 78-132 4-66 (296)
49 PHA02624 large T antigen; Prov 98.2 3E-06 6.5E-11 87.9 6.3 56 78-133 10-71 (647)
50 KOG0716 Molecular chaperone (D 98.1 3E-06 6.4E-11 80.2 5.4 49 78-126 30-86 (279)
51 COG5407 SEC63 Preprotein trans 98.1 2.4E-06 5.2E-11 85.9 4.9 56 77-132 96-164 (610)
52 KOG0718 Molecular chaperone (D 98.1 4.8E-06 1E-10 83.8 6.3 57 75-131 5-72 (546)
53 PRK05014 hscB co-chaperone Hsc 98.0 1.1E-05 2.5E-10 71.1 5.5 54 79-132 1-69 (171)
54 PRK01356 hscB co-chaperone Hsc 97.8 4.2E-05 9E-10 67.4 5.5 53 79-131 2-67 (166)
55 PRK00294 hscB co-chaperone Hsc 97.7 5.1E-05 1.1E-09 67.4 5.7 56 76-131 1-71 (173)
56 PRK03578 hscB co-chaperone Hsc 97.7 5.7E-05 1.2E-09 67.2 5.9 54 79-132 6-74 (176)
57 KOG0723 Molecular chaperone (D 97.6 8.9E-05 1.9E-09 61.8 5.2 53 75-127 52-108 (112)
58 KOG0568 Molecular chaperone (D 97.6 0.00013 2.9E-09 68.6 6.8 53 79-131 47-106 (342)
59 KOG0722 Molecular chaperone (D 97.6 3.6E-05 7.9E-10 73.0 2.5 51 77-127 31-88 (329)
60 KOG0624 dsRNA-activated protei 97.5 0.00012 2.5E-09 72.5 5.0 51 78-128 393-454 (504)
61 KOG0720 Molecular chaperone (D 97.5 9.1E-05 2E-09 74.5 4.2 52 75-126 231-289 (490)
62 PF13446 RPT: A repeated domai 97.2 0.0013 2.7E-08 48.6 6.0 51 75-128 1-51 (62)
63 KOG0714 Molecular chaperone (D 97.1 0.00037 8.1E-09 62.0 3.1 47 78-124 2-57 (306)
64 COG1076 DjlA DnaJ-domain-conta 97.1 0.00062 1.3E-08 59.9 4.1 46 79-124 113-173 (174)
65 KOG1789 Endocytosis protein RM 96.7 0.0031 6.7E-08 69.4 6.5 58 70-127 1272-1338(2235)
66 KOG0550 Molecular chaperone (D 96.6 0.0019 4.2E-08 64.9 4.2 57 78-134 372-437 (486)
67 KOG1150 Predicted molecular ch 96.4 0.0055 1.2E-07 56.7 5.0 56 79-134 53-117 (250)
68 PRK01773 hscB co-chaperone Hsc 96.0 0.016 3.5E-07 51.6 5.9 53 79-131 2-69 (173)
69 PF03656 Pam16: Pam16; InterP 95.8 0.021 4.5E-07 48.8 5.8 54 75-128 54-111 (127)
70 TIGR00714 hscB Fe-S protein as 93.6 0.1 2.2E-06 45.6 4.4 39 91-129 3-54 (157)
71 PF06570 DUF1129: Protein of u 92.4 7.2 0.00016 35.0 14.7 40 94-137 8-47 (206)
72 COG5269 ZUO1 Ribosome-associat 91.9 0.25 5.4E-06 47.9 4.9 55 77-131 41-108 (379)
73 COG4858 Uncharacterized membra 88.8 20 0.00043 33.4 15.2 35 94-128 22-56 (226)
74 PF04341 DUF485: Protein of un 84.5 5.1 0.00011 31.9 7.1 62 229-292 10-72 (91)
75 PRK10263 DNA translocase FtsK; 80.5 5.9 0.00013 45.4 8.0 16 277-292 161-176 (1355)
76 PRK05771 V-type ATP synthase s 71.0 54 0.0012 34.4 11.7 76 171-259 334-416 (646)
77 KOG3442 Uncharacterized conser 70.7 8.7 0.00019 33.3 4.8 50 75-124 55-108 (132)
78 PF05884 ZYG-11_interact: Inte 61.6 1.4E+02 0.0031 29.3 11.7 34 226-259 153-187 (299)
79 COG5552 Uncharacterized conser 61.3 24 0.00052 28.3 5.3 55 81-135 5-69 (88)
80 TIGR03434 ADOP Acidobacterial 56.3 1E+02 0.0022 32.4 10.6 26 237-262 730-755 (803)
81 PF10066 DUF2304: Uncharacteri 56.0 58 0.0013 26.8 7.0 61 227-290 20-81 (115)
82 PRK11427 multidrug efflux syst 55.5 1.1E+02 0.0025 33.1 10.8 68 156-238 5-74 (683)
83 PF11368 DUF3169: Protein of u 54.7 38 0.00082 31.3 6.3 30 231-260 3-32 (248)
84 PRK11026 ftsX cell division AB 53.1 2.2E+02 0.0047 27.4 13.3 20 87-106 72-91 (309)
85 PF11460 DUF3007: Protein of u 52.2 14 0.0003 31.0 2.7 53 237-294 4-56 (104)
86 TIGR02359 thiW thiW protein. L 51.1 94 0.002 27.6 8.0 65 214-291 73-138 (160)
87 PF13782 SpoVAB: Stage V sporu 49.0 22 0.00048 30.0 3.5 47 221-268 31-78 (110)
88 TIGR01185 devC DevC protein. T 48.7 43 0.00094 32.8 6.0 56 236-292 309-365 (380)
89 PF02392 Ycf4: Ycf4; InterPro 46.9 52 0.0011 30.0 5.8 36 231-269 14-49 (180)
90 TIGR01337 apcB allophycocyanin 46.9 35 0.00077 30.4 4.7 50 77-126 111-160 (167)
91 PF02687 FtsX: FtsX-like perme 45.9 1.3E+02 0.0029 22.8 7.7 26 236-261 48-73 (121)
92 PF10041 DUF2277: Uncharacteri 44.8 87 0.0019 25.1 6.0 26 84-109 8-33 (78)
93 PF11744 ALMT: Aluminium activ 44.7 54 0.0012 33.2 6.1 19 275-294 93-111 (406)
94 PRK02542 photosystem I assembl 44.6 45 0.00096 30.7 5.0 37 231-270 21-57 (188)
95 PTZ00352 60S ribosomal protein 41.8 38 0.00083 31.7 4.2 52 85-136 136-200 (212)
96 PF13858 DUF4199: Protein of u 41.7 1.5E+02 0.0032 24.9 7.6 26 235-260 62-87 (163)
97 PF06738 DUF1212: Protein of u 40.8 2.3E+02 0.0049 24.6 8.8 42 212-253 124-167 (193)
98 PF05437 AzlD: Branched-chain 40.7 1.3E+02 0.0029 23.6 6.7 67 159-247 29-95 (99)
99 COG5487 Small integral membran 40.7 48 0.001 24.7 3.7 47 236-293 2-48 (54)
100 PRK10441 iron-enterobactin tra 40.4 1.1E+02 0.0025 29.9 7.5 85 161-258 80-167 (335)
101 PF12597 DUF3767: Protein of u 40.0 45 0.00097 28.2 4.0 31 224-256 55-85 (118)
102 PF04632 FUSC: Fusaric acid re 39.9 3.5E+02 0.0077 27.7 11.3 44 211-257 363-406 (650)
103 COG0141 HisD Histidinol dehydr 38.8 66 0.0014 33.0 5.7 38 91-136 61-98 (425)
104 CHL00089 apcF allophycocyanin 38.1 55 0.0012 29.4 4.5 50 77-126 112-162 (169)
105 PF11833 DUF3353: Protein of u 37.8 1.4E+02 0.003 27.2 7.2 38 223-260 129-167 (194)
106 cd06572 Histidinol_dh Histidin 37.4 53 0.0012 33.2 4.7 39 90-136 36-74 (390)
107 TIGR00069 hisD histidinol dehy 36.3 58 0.0013 33.0 4.8 39 91-137 33-71 (393)
108 PF07331 TctB: Tripartite tric 35.7 2.1E+02 0.0046 23.3 7.4 30 214-243 92-121 (141)
109 cd02433 Nodulin-21_like_2 Nodu 35.5 2.6E+02 0.0056 26.1 8.7 20 235-254 211-230 (234)
110 PRK11677 hypothetical protein; 35.0 37 0.0008 29.4 2.8 20 241-260 4-23 (134)
111 PF06181 DUF989: Protein of un 34.5 1.5E+02 0.0033 29.1 7.2 24 235-258 118-141 (300)
112 COG3162 Predicted membrane pro 34.2 2E+02 0.0043 24.2 6.8 60 229-290 18-78 (102)
113 PRK12447 histidinol dehydrogen 34.0 68 0.0015 32.9 4.9 39 90-136 57-95 (426)
114 TIGR02212 lolCE lipoprotein re 34.0 1.2E+02 0.0026 28.9 6.4 25 236-260 317-341 (411)
115 PRK00877 hisD bifunctional his 33.9 66 0.0014 32.9 4.8 40 90-137 64-103 (425)
116 PRK13770 histidinol dehydrogen 33.6 69 0.0015 32.7 4.9 39 91-137 57-95 (416)
117 PRK07668 hypothetical protein; 33.4 4.4E+02 0.0095 25.2 15.1 143 95-258 9-162 (254)
118 CHL00036 ycf4 photosystem I as 33.1 27 0.00058 32.0 1.7 36 231-269 17-52 (184)
119 PRK10720 uracil transporter; P 32.7 2.3E+02 0.005 28.4 8.4 44 213-257 155-198 (428)
120 PRK10814 outer membrane-specif 32.2 2.4E+02 0.0052 27.1 8.2 26 236-261 315-340 (399)
121 PRK10692 hypothetical protein; 31.8 2.1E+02 0.0046 23.6 6.4 55 231-291 3-61 (92)
122 PF01032 FecCD: FecCD transpor 31.7 1.1E+02 0.0024 29.4 5.7 41 218-259 109-149 (311)
123 PRK12495 hypothetical protein; 31.6 60 0.0013 30.7 3.8 31 97-127 6-37 (226)
124 PRK03784 vtamin B12-transporte 31.5 1.6E+02 0.0035 28.9 6.9 35 222-258 130-164 (331)
125 PRK01844 hypothetical protein; 31.4 70 0.0015 25.2 3.5 23 236-258 3-25 (72)
126 PF14159 CAAD: CAAD domains of 31.4 2E+02 0.0044 23.1 6.4 57 230-293 12-68 (90)
127 PF13074 DUF3938: Protein of u 31.4 42 0.00091 27.2 2.4 44 214-257 14-57 (102)
128 TIGR00801 ncs2 uracil-xanthine 31.0 5.4E+02 0.012 25.6 11.1 44 213-257 162-205 (415)
129 PRK00523 hypothetical protein; 30.9 72 0.0016 25.2 3.5 23 236-258 4-26 (72)
130 PRK13108 prolipoprotein diacyl 30.8 1.6E+02 0.0036 30.3 7.1 58 221-283 206-265 (460)
131 TIGR02230 ATPase_gene1 F0F1-AT 30.6 66 0.0014 26.6 3.5 22 236-257 70-91 (100)
132 PRK10631 p-hydroxybenzoic acid 30.5 5E+02 0.011 28.1 10.8 57 187-253 362-419 (652)
133 COG1295 Rbn Ribonuclease BN fa 30.4 1.6E+02 0.0035 28.1 6.7 62 223-288 205-267 (303)
134 PF11377 DUF3180: Protein of u 30.3 3.5E+02 0.0076 23.2 8.4 54 235-290 74-127 (138)
135 PF03176 MMPL: MMPL family; I 30.3 2.1E+02 0.0046 26.8 7.3 36 217-252 211-263 (333)
136 PF03613 EIID-AGA: PTS system 30.1 83 0.0018 30.0 4.6 37 218-254 225-262 (264)
137 PF06781 UPF0233: Uncharacteri 30.0 1.9E+02 0.004 23.5 5.9 17 237-253 66-82 (87)
138 PF01102 Glycophorin_A: Glycop 30.0 62 0.0013 27.7 3.3 13 184-196 67-79 (122)
139 CHL00045 ccsA cytochrome c bio 29.1 2.4E+02 0.0053 27.4 7.7 52 218-271 18-71 (319)
140 PF13105 DUF3959: Protein of u 28.8 2.3E+02 0.005 26.6 7.0 30 232-261 121-150 (239)
141 PF00815 Histidinol_dh: Histid 28.7 76 0.0016 32.4 4.2 38 90-135 49-86 (412)
142 COG4956 Integral membrane prot 28.3 2.3E+02 0.0049 28.5 7.2 22 239-260 80-101 (356)
143 PF10762 DUF2583: Protein of u 27.9 1.5E+02 0.0033 24.2 5.0 55 231-291 3-61 (89)
144 PF15498 Dendrin: Nephrin and 27.7 80 0.0017 33.0 4.2 78 7-91 108-192 (657)
145 COG3763 Uncharacterized protei 27.7 88 0.0019 24.6 3.5 24 235-258 2-25 (71)
146 TIGR00439 ftsX putative protei 27.2 5.7E+02 0.012 24.6 12.3 20 87-106 72-91 (309)
147 KOG1558 Fe2+/Zn2+ regulated tr 26.8 1.5E+02 0.0032 29.2 5.8 46 214-260 271-326 (327)
148 COG0730 Predicted permeases [G 26.3 3.2E+02 0.0069 24.8 7.6 25 236-260 72-96 (258)
149 PF06295 DUF1043: Protein of u 26.2 47 0.001 28.0 2.0 18 243-260 2-19 (128)
150 PF10190 Tmemb_170: Putative t 25.6 4E+02 0.0087 22.3 8.2 22 273-294 79-100 (105)
151 PF09527 ATPase_gene1: Putativ 25.6 1.3E+02 0.0027 21.4 3.9 19 235-253 27-45 (55)
152 PF11457 DUF3021: Protein of u 25.5 3.8E+02 0.0082 21.9 7.9 60 227-290 62-121 (136)
153 PF09877 DUF2104: Predicted me 25.5 2.7E+02 0.0057 23.3 6.1 64 212-290 35-98 (99)
154 PF07281 INSIG: Insulin-induce 25.2 3.1E+02 0.0067 25.0 7.2 24 212-235 105-129 (193)
155 PRK11412 putative uracil/xanth 25.2 5.2E+02 0.011 26.3 9.5 41 214-255 171-211 (433)
156 PF11085 YqhR: Conserved membr 25.2 4E+02 0.0087 24.3 7.7 57 227-288 89-145 (173)
157 PRK14787 lipoprotein signal pe 24.9 3.1E+02 0.0068 24.0 7.0 18 275-292 139-156 (159)
158 COG3601 Predicted membrane pro 24.9 4.2E+02 0.009 24.5 7.8 42 217-262 84-125 (186)
159 PF11808 DUF3329: Domain of un 24.9 1.2E+02 0.0025 24.1 3.9 24 234-257 7-30 (90)
160 PRK09777 fecD iron-dicitrate t 24.9 4.6E+02 0.0099 25.6 8.7 82 161-257 71-153 (318)
161 PRK11146 outer membrane-specif 24.6 2.2E+02 0.0047 27.6 6.5 22 237-258 319-340 (412)
162 PF12725 DUF3810: Protein of u 24.5 2.1E+02 0.0046 27.8 6.3 46 80-125 83-147 (318)
163 PRK06814 acylglycerophosphoeth 24.4 2.4E+02 0.0051 31.0 7.3 28 234-261 140-167 (1140)
164 COG4993 Gcd Glucose dehydrogen 24.3 2.1E+02 0.0046 31.2 6.7 42 213-258 30-72 (773)
165 COG5395 Predicted membrane pro 24.2 2.2E+02 0.0047 24.6 5.5 61 223-288 26-86 (131)
166 KOG4330 Uncharacterized conser 24.1 5E+02 0.011 24.1 8.1 21 113-133 162-182 (206)
167 PF14235 DUF4337: Domain of un 24.0 1.4E+02 0.0031 26.3 4.6 35 216-251 120-154 (157)
168 TIGR02213 lolE_release lipopro 23.7 2.3E+02 0.0051 27.5 6.5 22 237-258 318-339 (411)
169 COG1289 Predicted membrane pro 23.7 4.3E+02 0.0093 28.0 8.9 49 211-259 33-81 (674)
170 PF10335 DUF294_C: Putative nu 23.6 2.4E+02 0.0053 23.8 5.9 45 86-134 58-102 (145)
171 PF07695 7TMR-DISM_7TM: 7TM di 23.5 2.7E+02 0.0058 23.3 6.1 39 221-259 16-54 (205)
172 PF07709 SRR: Seven Residue Re 23.2 44 0.00094 18.1 0.8 12 113-124 2-13 (14)
173 PF04932 Wzy_C: O-Antigen liga 23.1 2.1E+02 0.0046 23.3 5.3 21 213-233 17-37 (163)
174 PF03729 DUF308: Short repeat 22.8 2E+02 0.0042 20.4 4.5 20 234-253 51-70 (72)
175 PRK02251 putative septation in 22.7 3.2E+02 0.007 22.2 6.1 16 238-253 67-82 (87)
176 PF06305 DUF1049: Protein of u 22.6 1.1E+02 0.0024 22.2 3.1 20 239-258 20-39 (68)
177 TIGR03480 HpnN hopanoid biosyn 22.6 2.4E+02 0.0051 30.8 6.9 37 218-254 776-822 (862)
178 PF01384 PHO4: Phosphate trans 22.6 2.6E+02 0.0055 27.2 6.5 40 232-271 17-57 (326)
179 COG1269 NtpI Archaeal/vacuolar 22.1 7.6E+02 0.016 26.5 10.4 74 172-258 349-430 (660)
180 PF02417 Chromate_transp: Chro 21.8 5.2E+02 0.011 22.3 10.0 46 213-260 84-129 (169)
181 PF04226 Transgly_assoc: Trans 21.6 2.4E+02 0.0051 20.1 4.6 41 248-292 5-46 (48)
182 COG0670 Integral membrane prot 21.6 4.5E+02 0.0097 24.6 7.7 39 221-259 130-168 (233)
183 COG5481 Uncharacterized conser 21.4 1.9E+02 0.0042 22.3 4.2 44 90-133 3-47 (67)
184 PF02529 PetG: Cytochrome B6-F 21.1 1.7E+02 0.0037 20.4 3.5 19 219-237 18-36 (37)
185 PF05251 UPF0197: Uncharacteri 21.0 2.9E+02 0.0063 22.0 5.3 30 217-246 23-58 (77)
186 PF13829 DUF4191: Domain of un 21.0 1.1E+02 0.0025 28.7 3.6 37 224-260 14-52 (224)
187 PF14490 HHH_4: Helix-hairpin- 21.0 91 0.002 24.6 2.6 47 77-127 40-86 (94)
188 PRK14769 lipoprotein signal pe 20.7 4.7E+02 0.01 23.0 7.2 14 247-260 95-108 (156)
189 PRK00159 putative septation in 20.7 2E+02 0.0043 23.5 4.4 16 238-253 67-82 (87)
190 PRK11056 hypothetical protein; 20.6 4E+02 0.0088 23.0 6.5 64 219-289 41-108 (120)
191 PRK03612 spermidine synthase; 20.3 2.8E+02 0.0061 28.6 6.6 34 235-271 142-175 (521)
192 PF12732 YtxH: YtxH-like prote 20.1 99 0.0021 23.3 2.5 17 244-260 2-18 (74)
193 PF04120 Iron_permease: Low af 20.1 1.3E+02 0.0028 26.0 3.5 41 243-289 20-60 (132)
194 PRK10711 hypothetical protein; 20.0 3.4E+02 0.0074 25.6 6.5 49 212-260 60-112 (231)
No 1
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=100.00 E-value=1.6e-59 Score=418.94 Aligned_cols=190 Identities=46% Similarity=0.735 Sum_probs=178.7
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC-CccccccccC---CCCCCCCCCCCChHHH
Q 022611 88 SETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKV-VDSSIRYADV---NPVGTPGMGPMPQWLQ 163 (294)
Q Consensus 88 s~~AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~GKi-v~~~IRyAd~---~~~~~~~~~~~P~Wlq 163 (294)
||||||||||+|||++++||++|++++++||+|||+|||+||++||+||| |+++|||+|+ ++..+.+.++.|+|+|
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~ 80 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQ 80 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHH
Confidence 68999999999999999999999999999999999999999999999999 9999999999 3344444477899988
Q ss_pred HhhhhCCceecCCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHhhhhhhhhhhhhhhhHHHHHHH
Q 022611 164 TSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKAAVIT 243 (294)
Q Consensus 164 ~~lk~l~~~~~~Ps~~~L~~~a~if~~L~~~t~~~g~s~~~~~~~~~~~~p~L~LAls~~a~iYfL~rK~k~lgRA~ll~ 243 (294)
++ .++||+|++++|.+++++|++|++|+++++. +++|+|+||+|+++||||||||+++||||++++
T Consensus 81 ~~----~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~----------~~~~~l~Lal~~~~~iyfl~~K~~~~~rA~~~~ 146 (194)
T PF11833_consen 81 RL----LPSFDTPSSQDLLIRAAAFGALGLWSLLFPA----------ASGPGLQLALGLGACIYFLNRKERKLGRAFLWT 146 (194)
T ss_pred hc----ccceeCCCcchHHHHHHHHHHHHHHHHHHcC----------CCCcchHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 75 7889999999999999999999999999732 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHHHhhhc
Q 022611 244 IGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYL 293 (294)
Q Consensus 244 ~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvssfL 293 (294)
+++|++||++|+++++|+.++++| +..+||+++++++|++||++|+||
T Consensus 147 ~~~L~~G~~lGs~l~~~l~~~~~p--~~~s~~~~~sl~~~i~lwl~s~fL 194 (194)
T PF11833_consen 147 LGGLVVGLILGSLLASWLPVDIVP--GPWSPEQLVSLFTYILLWLVSLFL 194 (194)
T ss_pred HHHHHHHHHHHHHHHhhcccccCC--CCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999 677999999999999999999997
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.6e-11 Score=119.82 Aligned_cols=56 Identities=27% Similarity=0.398 Sum_probs=50.5
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDD--------QEAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D--------~~~~~~IEaAYD~Ilm~~L~~ 131 (294)
|+..|.|++|||+++||.||||+||++|..+||+| ++++.+|++|||.|...+-|+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa 64 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 67889999999999999999999999999999987 478999999999998765443
No 3
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.05 E-value=4.2e-10 Score=82.19 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=46.9
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHHHHHHHHHHH
Q 022611 80 NALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 80 dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
|||++|||+++++.+||+++|++++.+||+|. +.++.|+.||+.|....-|+
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 79999999999999999999999999999874 57889999999998766554
No 4
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.05 E-value=3.3e-10 Score=81.33 Aligned_cols=48 Identities=29% Similarity=0.486 Sum_probs=43.8
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLM 126 (294)
Q Consensus 79 ~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~---------~~~~~IEaAYD~Ilm 126 (294)
.|+|++|||+++++.+||++||+++.++||+|. +.+.+|+.||+.|..
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999874 578899999999864
No 5
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.05 E-value=3.4e-10 Score=94.83 Aligned_cols=51 Identities=33% Similarity=0.399 Sum_probs=48.0
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHH
Q 022611 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDD----QEAIAQVEAAYDMLL 125 (294)
Q Consensus 75 ~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D----~~~~~~IEaAYD~Il 125 (294)
.|+.+++|++|||+++||.|||+++|++|+.+||+| ++.+++|++|||.|+
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999999987 468899999999985
No 6
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.8e-10 Score=109.57 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=50.4
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
...+|+|++|||+++||+.|||+|||+|.-+||+|+ +.+.+|++||++|-..-+|+
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 356899999999999999999999999999999974 68999999999998876554
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=3.6e-10 Score=109.86 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=50.2
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
|...|+|++|||+++||.+||++||++|..+||+|. +++++|++|||.|....-|+
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~ 63 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK 63 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhh
Confidence 667899999999999999999999999999999983 68899999999998865443
No 8
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.01 E-value=4.6e-10 Score=104.95 Aligned_cols=55 Identities=31% Similarity=0.472 Sum_probs=49.7
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH---------------HHHHHHHHHHHHHHHHH
Q 022611 74 FEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------------EAIAQVEAAYDMLLMRS 128 (294)
Q Consensus 74 f~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~---------------~~~~~IEaAYD~Ilm~~ 128 (294)
..++.+|+|++|||++++|.+|||+||++|+.+||||. +++++|++|||.|..+|
T Consensus 195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~r 264 (267)
T PRK09430 195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQK 264 (267)
T ss_pred CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 36888999999999999999999999999999999985 47889999999997543
No 9
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.99 E-value=9.8e-10 Score=77.40 Aligned_cols=46 Identities=28% Similarity=0.457 Sum_probs=42.1
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHH
Q 022611 80 NALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLL 125 (294)
Q Consensus 80 dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Il 125 (294)
|||++|||+++++.+||+++|+++.++||+|. +.+.+|+.||+.|.
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999874 46789999999884
No 10
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=7.1e-10 Score=107.56 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=47.4
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLT 130 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~ 130 (294)
..|+|++|||+++||.+||++||++|..+||+|. +++++|+.|||.|....-|
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR 62 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHH
Confidence 4799999999999999999999999999999973 5788999999998875544
No 11
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=7.8e-10 Score=104.00 Aligned_cols=56 Identities=27% Similarity=0.378 Sum_probs=49.9
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
|+..|+|++|||+++||.+||++||++|..+||+|. +++++|++|||.|.....|+
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~ 63 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRR 63 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHH
Confidence 667899999999999999999999999999999973 68889999999998765443
No 12
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=7e-10 Score=107.90 Aligned_cols=56 Identities=30% Similarity=0.345 Sum_probs=50.2
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D-------~~~~~~IEaAYD~Ilm~~L~~ 131 (294)
|..+|+|++|||+++||.+||++||++|..+||+| ++++++|++|||.|.+...|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 63 (380)
T PRK14276 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA 63 (380)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhh
Confidence 56689999999999999999999999999999998 378999999999998866443
No 13
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=8.7e-10 Score=107.06 Aligned_cols=56 Identities=29% Similarity=0.366 Sum_probs=49.8
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
|+..|+|++|||+++||.+||++||++|..+||+|. +++++|++|||.|.....|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 64 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence 667899999999999999999999999999999873 68889999999988765444
No 14
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.96 E-value=7.6e-10 Score=109.53 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=50.3
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHH
Q 022611 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDD----QEAIAQVEAAYDMLLMRSLT 130 (294)
Q Consensus 75 ~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D----~~~~~~IEaAYD~Ilm~~L~ 130 (294)
.|...|+|++|||+++||.+|||+||++|..+||+| ++++++|+.|||.|....-|
T Consensus 24 ~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR 83 (421)
T PTZ00037 24 EVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKR 83 (421)
T ss_pred cccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHH
Confidence 566789999999999999999999999999999987 48999999999999875544
No 15
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=9.3e-10 Score=106.59 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=49.3
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
|...|+|++|||+++||.+||++||++|..+||+|. +++++|+.|||.|.....|+
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 65 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence 667899999999999999999999999999999874 47889999999987764443
No 16
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=1.1e-09 Score=106.40 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=49.5
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
|...|+|++|||+++||.+||++||++|..+||+|. +++++|+.|||.|.....|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~ 63 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA 63 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHH
Confidence 556899999999999999999999999999999983 57899999999997765443
No 17
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.1e-09 Score=98.55 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=50.2
Q ss_pred CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHH
Q 022611 74 FEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 74 f~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
-++...||||+||++++||+.|||+||++|..+||+|+ +.+++|++||.++-.+.-|+
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sre 159 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRE 159 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHH
Confidence 35667899999999999999999999999999999875 57889999999997654443
No 18
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=1.6e-09 Score=105.30 Aligned_cols=57 Identities=28% Similarity=0.406 Sum_probs=50.1
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D-------~~~~~~IEaAYD~Ilm~~L~~R 132 (294)
|...|+|++|||+++||.+||++||++|..+||+| ++++++|+.|||.|.....|+.
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~ 64 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHH
Confidence 55689999999999999999999999999999998 3789999999999987554443
No 19
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=1.9e-09 Score=104.32 Aligned_cols=56 Identities=29% Similarity=0.401 Sum_probs=49.5
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
|+..|+|++|||+++||.+||++||++|..+||+|. +++++|+.|||.|.....|+
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhh
Confidence 667899999999999999999999999999999973 57789999999998765543
No 20
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=1.7e-09 Score=105.06 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=49.0
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLT 130 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~ 130 (294)
|.+.|+|++|||+++||.+||++||++|..+||+|. +++.+|++|||.|.....|
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR 63 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKR 63 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHH
Confidence 457899999999999999999999999999999984 6889999999998775544
No 21
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=2e-09 Score=105.38 Aligned_cols=57 Identities=30% Similarity=0.290 Sum_probs=49.7
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHH
Q 022611 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 75 ~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
+++..|+|++|||+++||.+||++||++|..+||+|. +++++|++|||.|..+.-|+
T Consensus 5 ~~~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~ 69 (392)
T PRK14279 5 EWVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69 (392)
T ss_pred hhcccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence 3456899999999999999999999999999999863 67889999999998765443
No 22
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=2.7e-09 Score=103.59 Aligned_cols=54 Identities=26% Similarity=0.387 Sum_probs=48.4
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 79 ~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D-------~~~~~~IEaAYD~Ilm~~L~~R 132 (294)
.|+|++|||+++||.+||++||+++..+||+| ++++++|+.|||.|.....|..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~ 63 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAA 63 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhH
Confidence 79999999999999999999999999999998 3688999999999987654443
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=3.1e-09 Score=102.91 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=50.5
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R 132 (294)
|...|+|++|||+++||.+||++||++|..+||+|. +++++|+.|||.|.+..-|+.
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~ 65 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 667899999999999999999999999999999873 578899999999987665544
No 24
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=2.5e-09 Score=104.54 Aligned_cols=52 Identities=27% Similarity=0.375 Sum_probs=47.4
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHH
Q 022611 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRS 128 (294)
Q Consensus 77 ~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~ 128 (294)
...|+|++|||+++||.+||++||++|..+||+|. +++++|+.|||.|....
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 66 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEK 66 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchh
Confidence 46899999999999999999999999999999983 68889999999998763
No 25
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=2.5e-09 Score=103.68 Aligned_cols=52 Identities=27% Similarity=0.389 Sum_probs=46.9
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L 129 (294)
..|+|++|||+++||.+||++||++|..+||+|. +++++|+.|||.|..+.-
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~k 61 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNK 61 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcch
Confidence 4799999999999999999999999999999974 578999999999987543
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=2.9e-09 Score=103.54 Aligned_cols=55 Identities=25% Similarity=0.369 Sum_probs=48.6
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLT 130 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~ 130 (294)
|...|+|++|||+++||.+||++||++|..+||+|. +++++|+.|||.|.....|
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r 63 (380)
T PRK14297 1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKK 63 (380)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhh
Confidence 556799999999999999999999999999999873 5788999999999876443
No 27
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=3.8e-09 Score=102.69 Aligned_cols=53 Identities=30% Similarity=0.403 Sum_probs=48.0
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRS 128 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~ 128 (294)
|+..|+|++|||+++||.+||++||++|..+||+|. +++++|++|||.|....
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 61 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAE 61 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchh
Confidence 567899999999999999999999999999999974 47889999999998654
No 28
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=3.7e-09 Score=102.95 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=47.9
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
..|+|++|||+++||.+||++||++|..+||+|. +++++|++|||.|....-|+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~ 64 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA 64 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhh
Confidence 5799999999999999999999999999999984 57889999999987755443
No 29
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=3.7e-09 Score=103.12 Aligned_cols=55 Identities=20% Similarity=0.342 Sum_probs=48.5
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R 132 (294)
..|+|++|||+++||++||++||++|..+||+|. +++++|+.|||.|.....|+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~ 66 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4799999999999999999999999999999873 578899999999987655443
No 30
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.85 E-value=5.3e-09 Score=98.92 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=47.8
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRS 128 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D-------~~~~~~IEaAYD~Ilm~~ 128 (294)
|...|+|++|||+++||.+||++||++|..+||+| ++++++|+.|||.|....
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~ 60 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ 60 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHH
Confidence 55689999999999999999999999999999998 268889999999997644
No 31
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.84 E-value=3.9e-09 Score=102.72 Aligned_cols=52 Identities=31% Similarity=0.355 Sum_probs=46.4
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLT 130 (294)
Q Consensus 79 ~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~ 130 (294)
.|+|++|||+++||.+||++||++|..+||+|. +++++|+.|||.|.....|
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r 61 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKR 61 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhh
Confidence 799999999999999999999999999999983 5788999999998765433
No 32
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=5.9e-09 Score=101.56 Aligned_cols=53 Identities=25% Similarity=0.380 Sum_probs=47.8
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRSLT 130 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D-------~~~~~~IEaAYD~Ilm~~L~ 130 (294)
..|+|++|||+++||.+||++||++|..+||+| ++++++|+.|||.|.....|
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR 61 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKR 61 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 479999999999999999999999999999998 36889999999999876444
No 33
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=7e-09 Score=100.96 Aligned_cols=56 Identities=29% Similarity=0.363 Sum_probs=49.4
Q ss_pred CCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 76 m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
|...|+|++|||+++||.+||++||++|..+||+|. +++++|+.|||.|.+...|+
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 446899999999999999999999999999999974 57889999999999874443
No 34
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=7.3e-09 Score=101.46 Aligned_cols=53 Identities=28% Similarity=0.395 Sum_probs=47.6
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLT 130 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~ 130 (294)
..|+|++|||+++||.+||++||++|..+||+|. +++++|++|||.|.....|
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r 62 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhh
Confidence 4799999999999999999999999999999973 5788999999999876543
No 35
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.73 E-value=1.6e-08 Score=98.85 Aligned_cols=55 Identities=29% Similarity=0.399 Sum_probs=47.9
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHHhcC
Q 022611 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQRRAG 135 (294)
Q Consensus 79 ~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~Rq~G 135 (294)
.|+|++|||+++||.+||++||++|..+||+|. +++++|+.||+.|... .+|+..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~--~kR~~Y 63 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDA--QKRESY 63 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCH--HHHHHH
Confidence 389999999999999999999999999999983 5788999999999876 344443
No 36
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.72 E-value=1.7e-08 Score=97.70 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=46.3
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLT 130 (294)
Q Consensus 79 ~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~ 130 (294)
.|+|++|||+++||.+||++||++|..+||+|. +++++|++|||.|.....|
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 63 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhh
Confidence 699999999999999999999999999999863 5678999999999875433
No 37
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.72 E-value=1.9e-08 Score=96.60 Aligned_cols=50 Identities=28% Similarity=0.419 Sum_probs=45.2
Q ss_pred chhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHH
Q 022611 80 NALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (294)
Q Consensus 80 dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~~L 129 (294)
|+|++|||+++||.+||++||++|..+||+|. +++++|+.|||.|.....
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~ 57 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEK 57 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHH
Confidence 78999999999999999999999999999874 578899999998876543
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.70 E-value=2.7e-08 Score=96.68 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=47.9
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
..|+|++|||+++||.+||++||++|..+||+|. +++++|+.||+.|..+..|+
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHH
Confidence 3699999999999999999999999999999983 68899999999998765443
No 39
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.4e-08 Score=94.51 Aligned_cols=53 Identities=28% Similarity=0.405 Sum_probs=47.5
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHH
Q 022611 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMR 127 (294)
Q Consensus 75 ~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~ 127 (294)
.|..+|+|++|||+++|+..|||.|+..|.++||||. +++.+|.+|||.|..+
T Consensus 39 ~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~ 98 (288)
T KOG0715|consen 39 IISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDE 98 (288)
T ss_pred cCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCH
Confidence 3445599999999999999999999999999999984 7899999999999753
No 40
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.67 E-value=3e-08 Score=96.07 Aligned_cols=51 Identities=37% Similarity=0.412 Sum_probs=45.8
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRSL 129 (294)
Q Consensus 79 ~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D-------~~~~~~IEaAYD~Ilm~~L 129 (294)
.|+|++|||+++||.+||++||++|.++||+| ++++++|++|||.|.....
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~ 59 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEK 59 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhh
Confidence 48999999999999999999999999999997 3678899999999876443
No 41
>PHA03102 Small T antigen; Reviewed
Probab=98.63 E-value=6.1e-08 Score=84.70 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=48.8
Q ss_pred ccchhhhhCCCCCC--CHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETA--SFDEILRAKNSIVANCKDD----QEAIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 78 ~~dpYevLGVs~~A--S~eEIq~Ar~~l~~~y~~D----~~~~~~IEaAYD~Ilm~~L~~R 132 (294)
.+..|++|||+++| |.+|||+||+++..+||+| ++++++|+.||+.|.....+.+
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 45789999999999 9999999999999999987 5789999999999987665555
No 42
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.8e-08 Score=94.08 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=47.4
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHH
Q 022611 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-----EAIAQVEAAYDMLLMRS 128 (294)
Q Consensus 77 ~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-----~~~~~IEaAYD~Ilm~~ 128 (294)
.+..-|.+|||+++||.+||++||++|..+||+|+ +++.+|..|||.|....
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~e 58 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPE 58 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH
Confidence 35678999999999999999999999999999985 89999999999998743
No 43
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.2e-07 Score=80.22 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=50.1
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHHHHHHHHHHHH
Q 022611 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 77 ~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~~R 132 (294)
...|+|++|||+++|+.+||++||+++..+||+|. +++.+|+.||+.+.....+..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~ 68 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAE 68 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 46799999999999999999999999999999862 788999999999988776654
No 44
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=6.6e-07 Score=89.68 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=46.7
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRS 128 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~---------~~~~~IEaAYD~Ilm~~ 128 (294)
..+.||+|||.++|+.+||+++||+|.-|||+|. ++++.|++|||+|-..+
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~ 66 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQ 66 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChH
Confidence 4789999999999999999999999999999985 68999999999997544
No 45
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.31 E-value=1e-06 Score=94.85 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=54.0
Q ss_pred CCCC-CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHH
Q 022611 71 SAPF-EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 71 ~~pf-~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~R 132 (294)
+++. .+.+.|.|++|||+++||.+||++||++|..+||||. +++++|..||+.|.....|++
T Consensus 564 ~~~t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~ 633 (1136)
T PTZ00341 564 AAPTIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKM 633 (1136)
T ss_pred ccccccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3344 5567899999999999999999999999999999983 689999999999998877765
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.7e-06 Score=80.70 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=51.3
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHHHHHHH--HhcCCC
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ----------EAIAQVEAAYDMLLMRSLTQ--RRAGKV 137 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~----------~~~~~IEaAYD~Ilm~~L~~--Rq~GKi 137 (294)
..|||++|||.++|+..||++||.++.-+||||. +++++++.||..+-.+.-|. -+.|+|
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 4499999999999999999999999999999984 48899999999997655444 366776
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.26 E-value=1.3e-06 Score=92.23 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=48.0
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 79 ~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~~L~~R 132 (294)
+|+|++|||+++|+.+||++||++|.++||+|. +++.+|+.||+.|.....|.+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~ 62 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999999985 468899999999987655443
No 48
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.5e-06 Score=81.61 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=50.2
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R 132 (294)
..|+|.+|||+++|+..||++||+...-+||+|+ ++|.++..||+.|....+|.+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~ 66 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAA 66 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5699999999999999999999999888999874 688999999999999888876
No 49
>PHA02624 large T antigen; Provisional
Probab=98.15 E-value=3e-06 Score=87.93 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=50.3
Q ss_pred ccchhhhhCCCCCC--CHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHh
Q 022611 78 VENALKLLGVSETA--SFDEILRAKNSIVANCKDD----QEAIAQVEAAYDMLLMRSLTQRR 133 (294)
Q Consensus 78 ~~dpYevLGVs~~A--S~eEIq~Ar~~l~~~y~~D----~~~~~~IEaAYD~Ilm~~L~~Rq 133 (294)
.++.|++|||+++| |++||++||+++..+||+| ++++++|+.||+.|...--+.|.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 56899999999999 9999999999999999976 58999999999999876666664
No 50
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3e-06 Score=80.17 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=44.1
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLM 126 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm 126 (294)
..|-|.+||+.++|+.||||+||+.|+.+||+|. +++.+||.||..|-.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD 86 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSD 86 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcC
Confidence 6789999999999999999999999999999763 689999999987753
No 51
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.13 E-value=2.4e-06 Score=85.85 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=48.9
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------------HHHHHHHHHHHHHHHHHHHHH
Q 022611 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------------EAIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 77 ~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------------~~~~~IEaAYD~Ilm~~L~~R 132 (294)
...||||+|||+.++|.+|||++|++|.-+||+|+ ++-.+|.+||..+-.+.-|+-
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~ren 164 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRREN 164 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45799999999999999999999999999999984 456789999999988765553
No 52
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.8e-06 Score=83.82 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=49.5
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-----------HHHHHHHHHHHHHHHHHHHH
Q 022611 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-----------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 75 ~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-----------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
+.++.|-|..|+|++|||.|||++||+++..-||+|+ +.+.+|..|||.|...+-|.
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa 72 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA 72 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 4556799999999999999999999999999999973 56889999999998766543
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=97.97 E-value=1.1e-05 Score=71.12 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=45.0
Q ss_pred cchhhhhCCCCC--CCHHHHHHHHHHHHHHcCCCH-------------HHHHHHHHHHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSET--ASFDEILRAKNSIVANCKDDQ-------------EAIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 79 ~dpYevLGVs~~--AS~eEIq~Ar~~l~~~y~~D~-------------~~~~~IEaAYD~Ilm~~L~~R 132 (294)
.|+|++|||++. ++.++|+++|+++.++||||. +....||.||+.|...-.|.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~ 69 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAE 69 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHH
Confidence 489999999996 778999999999999999984 234689999999986554443
No 54
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=97.77 E-value=4.2e-05 Score=67.39 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=44.4
Q ss_pred cchhhhhCCCCC--CCHHHHHHHHHHHHHHcCCCH-----H------HHHHHHHHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSET--ASFDEILRAKNSIVANCKDDQ-----E------AIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 79 ~dpYevLGVs~~--AS~eEIq~Ar~~l~~~y~~D~-----~------~~~~IEaAYD~Ilm~~L~~ 131 (294)
.|+|++|||+++ ++.++|+++|+++..+||||. + ....||.||+.|...-.|.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra 67 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA 67 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 589999999997 789999999999999999984 1 2459999999987654443
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=97.74 E-value=5.1e-05 Score=67.39 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=47.7
Q ss_pred CCccchhhhhCCCCC--CCHHHHHHHHHHHHHHcCCCH-------------HHHHHHHHHHHHHHHHHHHH
Q 022611 76 MSVENALKLLGVSET--ASFDEILRAKNSIVANCKDDQ-------------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 76 m~~~dpYevLGVs~~--AS~eEIq~Ar~~l~~~y~~D~-------------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
|...|+|++||+++. .+.++|+++|+++.++||||. +....||.||+.|.....|.
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 667899999999999 557999999999999999984 24579999999998765444
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=97.73 E-value=5.7e-05 Score=67.18 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=45.0
Q ss_pred cchhhhhCCCCC--CCHHHHHHHHHHHHHHcCCCH--------H-----HHHHHHHHHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSET--ASFDEILRAKNSIVANCKDDQ--------E-----AIAQVEAAYDMLLMRSLTQR 132 (294)
Q Consensus 79 ~dpYevLGVs~~--AS~eEIq~Ar~~l~~~y~~D~--------~-----~~~~IEaAYD~Ilm~~L~~R 132 (294)
.|+|++|||++. ++.++|+++|+++.++||||. + ....||.||++|...-.|.+
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~ 74 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRAR 74 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHH
Confidence 699999999996 678999999999999999983 1 23699999999987554443
No 57
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=8.9e-05 Score=61.83 Aligned_cols=53 Identities=26% Similarity=0.295 Sum_probs=48.5
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHH
Q 022611 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDD----QEAIAQVEAAYDMLLMR 127 (294)
Q Consensus 75 ~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D----~~~~~~IEaAYD~Ilm~ 127 (294)
+|+...+-.+|||++.++.+-|++|++|++-..|+| +....+||+|+|.+...
T Consensus 52 kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 52 KMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred ccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999888877 68899999999998543
No 58
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00013 Score=68.55 Aligned_cols=53 Identities=23% Similarity=0.413 Sum_probs=48.7
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 79 ~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D-------~~~~~~IEaAYD~Ilm~~L~~ 131 (294)
...|.+|||.++|+.|||+.|+-.|.++||+| .+.+.+|+.||.+++.+.+.+
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999986 478999999999999988876
No 59
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=3.6e-05 Score=72.96 Aligned_cols=51 Identities=25% Similarity=0.425 Sum_probs=45.0
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHH
Q 022611 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMR 127 (294)
Q Consensus 77 ~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm~ 127 (294)
..+|.|++|||+++|+..||.+||+.|..+||+|. +.+..|-.||+.+-.+
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~ 88 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDN 88 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccch
Confidence 46899999999999999999999999999999983 4678888999887554
No 60
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.51 E-value=0.00012 Score=72.50 Aligned_cols=51 Identities=25% Similarity=0.332 Sum_probs=44.6
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDD-----------QEAIAQVEAAYDMLLMRS 128 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D-----------~~~~~~IEaAYD~Ilm~~ 128 (294)
.+|.|++|||.++||-.||-+||+++.++.|+| ++++..|-+|.+++-...
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~E 454 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPE 454 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHH
Confidence 468999999999999999999999999999987 246778999999887654
No 61
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=9.1e-05 Score=74.55 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=47.1
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHH
Q 022611 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLM 126 (294)
Q Consensus 75 ~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~-------~~~~~IEaAYD~Ilm 126 (294)
+.+..|||.+|||..|.|+++||+.|+++..--|+|+ |.++.+..|||.|..
T Consensus 231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~ 289 (490)
T KOG0720|consen 231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGD 289 (490)
T ss_pred hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcc
Confidence 4458899999999999999999999999999999984 788999999999864
No 62
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.16 E-value=0.0013 Score=48.59 Aligned_cols=51 Identities=29% Similarity=0.348 Sum_probs=42.7
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 022611 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRS 128 (294)
Q Consensus 75 ~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~ 128 (294)
.|+.+++|+.|||+++.++|+|..+++..++ .|+........|...|-+.|
T Consensus 1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~---~~P~~~~~~r~AL~~Ia~~R 51 (62)
T PF13446_consen 1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVN---DDPSQKDTLREALRVIAESR 51 (62)
T ss_pred CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHH---cChHhHHHHHHHHHHHHHHc
Confidence 3889999999999999999999999999888 56666777777777776543
No 63
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00037 Score=61.99 Aligned_cols=47 Identities=23% Similarity=0.452 Sum_probs=38.6
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHHHH
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDML 124 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~---------~~~~~IEaAYD~I 124 (294)
..|.|++|||.++|+.+||++|++.+..+||+|+ +++.+|..|||.+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~l 57 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVL 57 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhcccccc
Confidence 4689999999999999999999999999999885 1234555677733
No 64
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00062 Score=59.92 Aligned_cols=46 Identities=33% Similarity=0.540 Sum_probs=42.3
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH---------------HHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------------EAIAQVEAAYDML 124 (294)
Q Consensus 79 ~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~---------------~~~~~IEaAYD~I 124 (294)
.|+|++||+...+++++|+++++.++.+||+|. +++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999874 5778999999875
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0031 Score=69.43 Aligned_cols=58 Identities=29% Similarity=0.385 Sum_probs=48.6
Q ss_pred CCCCCCCCccchhhhhCCCCC----CCHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHH
Q 022611 70 DSAPFEMSVENALKLLGVSET----ASFDEILRAKNSIVANCKDDQ-----EAIAQVEAAYDMLLMR 127 (294)
Q Consensus 70 ~~~pf~m~~~dpYevLGVs~~----AS~eEIq~Ar~~l~~~y~~D~-----~~~~~IEaAYD~Ilm~ 127 (294)
...|..|++.++||+|.|+-+ ..-+.|+++|.+|.++||+|+ +.+++|++|||.+-.+
T Consensus 1272 ekKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1272 EKKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSSE 1338 (2235)
T ss_pred hcCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 345778999999999998743 333789999999999999985 7899999999988643
No 66
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0019 Score=64.91 Aligned_cols=57 Identities=28% Similarity=0.293 Sum_probs=47.1
Q ss_pred ccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHHHHHHHHHHHHhc
Q 022611 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLTQRRA 134 (294)
Q Consensus 78 ~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~~Rq~ 134 (294)
-.|-|++|||+++||.+||++||+.+.-.||+|. .++.+|-.||..+-..-=+.|+-
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcc
Confidence 4689999999999999999999999999999873 46789999998876554444443
No 67
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0055 Score=56.69 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=47.7
Q ss_pred cchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHHHHHHHHHHHHhc
Q 022611 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLTQRRA 134 (294)
Q Consensus 79 ~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~---------~~~~~IEaAYD~Ilm~~L~~Rq~ 134 (294)
-|||++|.|.++.+.|+|++-|+.|---.|+|. +.+..|..||..+..+..++|-.
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 489999999999999999999999887778753 46778999999888888777654
No 68
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=95.96 E-value=0.016 Score=51.61 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=44.8
Q ss_pred cchhhhhCCCCC--CCHHHHHHHHHHHHHHcCCCH-------------HHHHHHHHHHHHHHHHHHHH
Q 022611 79 ENALKLLGVSET--ASFDEILRAKNSIVANCKDDQ-------------EAIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 79 ~dpYevLGVs~~--AS~eEIq~Ar~~l~~~y~~D~-------------~~~~~IEaAYD~Ilm~~L~~ 131 (294)
.|+|++||+++. .+..++++.|+.|-+++|||. +.-..||.||.+|...-.|.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA 69 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA 69 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 689999999998 899999999999999999984 23469999999997654333
No 69
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.82 E-value=0.021 Score=48.85 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=41.1
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHH
Q 022611 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKD----DQEAIAQVEAAYDMLLMRS 128 (294)
Q Consensus 75 ~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~----D~~~~~~IEaAYD~Ilm~~ 128 (294)
.|+.+...++|||++..+-|||++-|++|.+...+ ......+|..|.|.|..+=
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999864 4678889999999997654
No 70
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=93.57 E-value=0.1 Score=45.62 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCH-------------HHHHHHHHHHHHHHHHHH
Q 022611 91 ASFDEILRAKNSIVANCKDDQ-------------EAIAQVEAAYDMLLMRSL 129 (294)
Q Consensus 91 AS~eEIq~Ar~~l~~~y~~D~-------------~~~~~IEaAYD~Ilm~~L 129 (294)
-+.++|+++|+++..+||||. +..+.||.||+++...-.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~ 54 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLM 54 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhh
Confidence 367899999999999999993 356799999999976443
No 71
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=92.39 E-value=7.2 Score=35.04 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022611 94 DEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKV 137 (294)
Q Consensus 94 eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~GKi 137 (294)
|=+.+.++.|.+.--.|++..+-+++..|.|+ ..-++||-
T Consensus 8 ~y~~~l~~~L~~~~~~e~~~e~~L~eil~~Ll----eaQk~G~t 47 (206)
T PF06570_consen 8 EYIFDLRKYLRSSGVSEEEIEELLEEILPHLL----EAQKKGKT 47 (206)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH----HHHhCCCc
Confidence 33555667775555556666666666666665 56677773
No 72
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=0.25 Score=47.92 Aligned_cols=55 Identities=25% Similarity=0.271 Sum_probs=46.4
Q ss_pred CccchhhhhCCCC---CCCHHHHHHHHHHHHHHcCCCHH----------HHHHHHHHHHHHHHHHHHH
Q 022611 77 SVENALKLLGVSE---TASFDEILRAKNSIVANCKDDQE----------AIAQVEAAYDMLLMRSLTQ 131 (294)
Q Consensus 77 ~~~dpYevLGVs~---~AS~eEIq~Ar~~l~~~y~~D~~----------~~~~IEaAYD~Ilm~~L~~ 131 (294)
...|.|.+||++. -|..++|.+|++..+-+||+|.+ -+.-|+.|||.|-...+|.
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~ 108 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRL 108 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHh
Confidence 3479999999986 58899999999999999999864 6789999999987655543
No 73
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=88.83 E-value=20 Score=33.37 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 022611 94 DEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRS 128 (294)
Q Consensus 94 eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~ 128 (294)
|=|-.+-++++..++.|++...-+|++..+|+.++
T Consensus 22 eyvh~vtkqli~~gksdeeik~Il~e~ipqIleeQ 56 (226)
T COG4858 22 EYVHEVTKQLIGDGKSDEEIKIILEEMIPQILEEQ 56 (226)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 44556677888888899999999999999998654
No 74
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=84.54 E-value=5.1 Score=31.92 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=48.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-hhhhcccccCCCCCChhHHHHHHHHHHHHHHhhh
Q 022611 229 MTRKNVKLGKAAVITIGGLVAGAVVGSAVE-NWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLY 292 (294)
Q Consensus 229 L~rK~k~lgRA~ll~~ggLv~G~llGs~l~-~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvssf 292 (294)
|.|+.+++++.+.+.+.++.+|.++-++.. .++-.++.+. .+ +-..+..+..+++.|+++..
T Consensus 10 L~r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G-~~-t~g~~~g~~~~~~~~~l~~~ 72 (91)
T PF04341_consen 10 LVRRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMATPVFPG-SL-TLGIVLGLGQIVFAWVLTWL 72 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCcccCC-Cc-CHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999988988888876 6665544443 35 67888999999999987754
No 75
>PRK10263 DNA translocase FtsK; Provisional
Probab=80.52 E-value=5.9 Score=45.45 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 022611 277 VVSEFILFSQFLVSLY 292 (294)
Q Consensus 277 ~vs~~~~~~lwlvssf 292 (294)
+.+.++++++|+++..
T Consensus 161 vGa~LILLlllLIGLi 176 (1355)
T PRK10263 161 SGGTIALLCVWAAGLT 176 (1355)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555556665543
No 76
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=71.00 E-value=54 Score=34.43 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=42.5
Q ss_pred ceecCCCccchhHH---HHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHH-Hhhhhhhh--hhhhhhhhHH-HHHHH
Q 022611 171 VSVENPSTGDLGIQ---AGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILAS-SFGASLYF--MTRKNVKLGK-AAVIT 243 (294)
Q Consensus 171 ~~~~~Ps~~~L~~~---a~if~~L~~~t~~~g~s~~~~~~~~~~~~p~L~LAl-s~~a~iYf--L~rK~k~lgR-A~ll~ 243 (294)
.++.+|..+++--+ +..|-++.++.+- +-+=++.+.+ |+.....+ .++..+++++ -+..+
T Consensus 334 ~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~g-------------D~GyGLil~l~~~~l~~~~~k~~~~~~~~~~il~~~g 400 (646)
T PRK05771 334 EMYSLPKYNEIDPTPFLAIFFPLFFGMMLG-------------DAGYGLLLLLIGLLLSFKLKKKSEGLKRLLKILIYLG 400 (646)
T ss_pred HHcCCCCCCCcCCccHHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 45777877777644 2334444444442 3456676665 22111111 1111246666 45567
Q ss_pred HHHHHHHHHHHHHhhh
Q 022611 244 IGGLVAGAVVGSAVEN 259 (294)
Q Consensus 244 ~ggLv~G~llGs~l~~ 259 (294)
+.+.+.|++-|++...
T Consensus 401 i~sii~G~lyG~fFG~ 416 (646)
T PRK05771 401 ISTIIWGLLTGSFFGF 416 (646)
T ss_pred HHHHHHHHHHHhHhcC
Confidence 7788999999998853
No 77
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.69 E-value=8.7 Score=33.31 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=38.8
Q ss_pred CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHH
Q 022611 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCK----DDQEAIAQVEAAYDML 124 (294)
Q Consensus 75 ~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~----~D~~~~~~IEaAYD~I 124 (294)
.|+.+..-++|+|++.-+.|||.+-|++|.+-.. |.-....+|=.|.|.|
T Consensus 55 ~iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErl 108 (132)
T KOG3442|consen 55 KITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERL 108 (132)
T ss_pred cccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHH
Confidence 6999999999999999999999999999998763 2223344555555544
No 78
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=61.65 E-value=1.4e+02 Score=29.31 Aligned_cols=34 Identities=18% Similarity=0.449 Sum_probs=23.4
Q ss_pred hhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHhhh
Q 022611 226 LYFMTRKNVKL-GKAAVITIGGLVAGAVVGSAVEN 259 (294)
Q Consensus 226 iYfL~rK~k~l-gRA~ll~~ggLv~G~llGs~l~~ 259 (294)
.|.+|+|-+.+ +.-+.+.+.+++=|.++|..+.+
T Consensus 153 ~y~ln~~~~s~~~~R~~ll~~a~~QGvL~Ga~ls~ 187 (299)
T PF05884_consen 153 YYYLNKEDGSLAESRLALLFFALFQGVLVGAGLSH 187 (299)
T ss_pred HhhcccccCchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566655544 33455777788889999999975
No 79
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=61.25 E-value=24 Score=28.34 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=38.2
Q ss_pred hhhhhCCCCCCCHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHH------HHHHHHHHhcC
Q 022611 81 ALKLLGVSETASFDEILRAKNSIVANC----KDDQEAIAQVEAAYDML------LMRSLTQRRAG 135 (294)
Q Consensus 81 pYevLGVs~~AS~eEIq~Ar~~l~~~y----~~D~~~~~~IEaAYD~I------lm~~L~~Rq~G 135 (294)
=-+..|.++-|+.+||+.|-...+++. |+.+...+..|+|.+.| +.+.|.-||..
T Consensus 5 Ik~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~iaA~areLLDaLet~q~P 69 (88)
T COG5552 5 IKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIAATARELLDALETRQQP 69 (88)
T ss_pred hHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 345779999999999999966666665 44555666667776665 33555555555
No 80
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=56.27 E-value=1e+02 Score=32.40 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022611 237 GKAAVITIGGLVAGAVVGSAVENWLQ 262 (294)
Q Consensus 237 gRA~ll~~ggLv~G~llGs~l~~~l~ 262 (294)
.-++++++.|+++|+++|-++..|+.
T Consensus 730 ~E~~~l~~ig~~lg~~l~~~~~~~l~ 755 (803)
T TIGR03434 730 RQGLRLAAAGLAIGLAAALALARLLA 755 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999999999988876654
No 81
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=56.04 E-value=58 Score=26.78 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=28.6
Q ss_pred hhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHHHh
Q 022611 227 YFMTRKN-VKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVS 290 (294)
Q Consensus 227 YfL~rK~-k~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvs 290 (294)
....||. -+...++++.+.++ +.++.+...+++.. +--..|+.+|-.++-.+.++++.+++
T Consensus 20 i~~vr~~~l~~~~~l~Wl~~~i--~~l~~~ifP~~~~~-vA~~lGi~~~~n~lf~~~i~~ll~~~ 81 (115)
T PF10066_consen 20 IRLVRKRKLRLKYSLLWLVFSI--ILLILSIFPNILDW-VAKLLGIGRPPNLLFYLGILFLLVII 81 (115)
T ss_pred HHHHHHhhccHHHHHHHHHHHH--HHHHHHhhhhHHHH-HHHHHCCCchhHHHHHHHHHHHHHHH
Confidence 3333443 35666666555443 33333433333211 11234777776666555555554443
No 82
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=55.46 E-value=1.1e+02 Score=33.08 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=38.4
Q ss_pred CCCChHHHHhhhhCCcee--cCCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHhhhhhhhhhhhh
Q 022611 156 GPMPQWLQTSLKKSTVSV--ENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKN 233 (294)
Q Consensus 156 ~~~P~Wlq~~lk~l~~~~--~~Ps~~~L~~~a~if~~L~~~t~~~g~s~~~~~~~~~~~~p~L~LAls~~a~iYfL~rK~ 233 (294)
++.|.-+++++.-+-..+ ..|+..+...+..+-..|.+...+. -+.|-..+++ +.||+..+.+
T Consensus 5 ~~~p~~~~~~~~~~~~~~~~~~P~r~~~~~r~~~a~~L~l~i~~~------------l~~P~~a~a~---~~vfivsqp~ 69 (683)
T PRK11427 5 NSLPLPVVRLLAFFHEELSERRPGRVPQTLQLWVGCLLVILISMT------------FEIPFLALSL---AVLFYGIQSN 69 (683)
T ss_pred ccCChhHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHH------------cCCCHHHHHH---HHHHheeccc
Confidence 455666665533222222 2367777777765544554444432 2567777776 6778888876
Q ss_pred hhhHH
Q 022611 234 VKLGK 238 (294)
Q Consensus 234 k~lgR 238 (294)
.---+
T Consensus 70 ~g~t~ 74 (683)
T PRK11427 70 AFYTK 74 (683)
T ss_pred hHHHH
Confidence 53333
No 83
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=54.69 E-value=38 Score=31.27 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=24.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 022611 231 RKNVKLGKAAVITIGGLVAGAVVGSAVENW 260 (294)
Q Consensus 231 rK~k~lgRA~ll~~ggLv~G~llGs~l~~~ 260 (294)
+|.|+++|.+++.+.|.++|.++|.+....
T Consensus 3 ~~k~~~~~~~~~illg~~iGg~~G~~~~~~ 32 (248)
T PF11368_consen 3 KKKKRILRFLLLILLGGLIGGFIGFFIGRI 32 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445579999999999999999999987543
No 84
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=53.13 E-value=2.2e+02 Score=27.43 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 022611 87 VSETASFDEILRAKNSIVAN 106 (294)
Q Consensus 87 Vs~~AS~eEIq~Ar~~l~~~ 106 (294)
+++|++++++++..+++.+.
T Consensus 72 l~~~~~~~~~~~l~~~L~~~ 91 (309)
T PRK11026 72 LDKTLDDDAANAVVEQLKAE 91 (309)
T ss_pred ECCCCCHHHHHHHHHHHhCC
Confidence 47899999999988888653
No 85
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=52.19 E-value=14 Score=30.99 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHHHhhhcC
Q 022611 237 GKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR 294 (294)
Q Consensus 237 gRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvssfLR 294 (294)
+..+++++|-+++|.++..++. ++-.|-.- .|+ -.+.+-+ ..++-|+.|-++|
T Consensus 4 ~dvl~Iglgv~~~Gg~~Y~~l~-~~G~d~~~-AGi--~sq~~lv-~glvgW~~sYlfR 56 (104)
T PF11460_consen 4 IDVLLIGLGVFLLGGLLYGGLQ-AAGLDSLS-AGI--WSQALLV-LGLVGWVSSYLFR 56 (104)
T ss_pred cceeeecHHHHHHHHHHHHHHH-HcCCCchh-hhH--HHHHHHH-HHHHHHHhHHHhh
Confidence 4466789999999999888884 22111111 112 1222222 2257898887766
No 86
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=51.11 E-value=94 Score=27.60 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=37.3
Q ss_pred hHHHHHHHhhhhhhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHHHhh
Q 022611 214 PGLILASSFGASLYFMTRKNV-KLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSL 291 (294)
Q Consensus 214 p~L~LAls~~a~iYfL~rK~k-~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvss 291 (294)
|++.+..-+.+.+| ||.+ +.+..+...+|.-++|.++.+-++.|+- |- +...+.+.|+.-|+.|+
T Consensus 73 pg~~~~a~laGliy---rk~~~~~~a~~ge~igt~iig~~~s~pi~~~~~-------g~---~~~~~~~~~~~~f~~st 138 (160)
T TIGR02359 73 PGGMPGALLAGLLY---RFGRKHYWASLGEILGTGIIGSLLAYPVAAWLL-------GS---SENFALFPITLGFIVST 138 (160)
T ss_pred HHHHHHHHHHHHHH---HHccccHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CC---cchhHHHHHHHHHHHHH
Confidence 44444333344444 4433 4455677777777889998888877652 22 11134666666666665
No 87
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=48.98 E-value=22 Score=30.01 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=30.9
Q ss_pred HhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc-ccccC
Q 022611 221 SFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQV-DIVPF 268 (294)
Q Consensus 221 s~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~~l~v-~ivP~ 268 (294)
++.+++.++++=.-.+|. .++.+.||+.|.++|.+.+.+-|+ +++|.
T Consensus 31 ~~~gn~~~~~~~~~~~~~-~~~~i~GL~~GiFvG~la~ALaEvlnv~PI 78 (110)
T PF13782_consen 31 AILGNIFSLFEISIPLGP-ILLIIFGLFAGIFVGCLAAALAEVLNVFPI 78 (110)
T ss_pred HHHHHHHHHHcccccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555 666777888888888888777664 66675
No 88
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=48.73 E-value=43 Score=32.80 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh-hhhcccccCCCCCChhHHHHHHHHHHHHHHhhh
Q 022611 236 LGKAAVITIGGLVAGAVVGSAVEN-WLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLY 292 (294)
Q Consensus 236 lgRA~ll~~ggLv~G~llGs~l~~-~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvssf 292 (294)
+.-++++++.|.++|.++|.++.. ......+|+. ++....+.+.+..+++-+++++
T Consensus 309 l~Ea~ll~~iG~~~G~~lg~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~ 365 (380)
T TIGR01185 309 LQEALLLACLGYLPGWGFAILLYTTARQATLLPVF-MSYDRAITVLILTMIMCFVSGS 365 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEE-ecHHHHHHHHHHHHHHHHHHHH
Confidence 455888999999999999977632 2333445654 4234444444444455444443
No 89
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=46.92 E-value=52 Score=30.04 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=27.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC
Q 022611 231 RKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFL 269 (294)
Q Consensus 231 rK~k~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~ 269 (294)
||.-++.||+.+.+||+ |.++ ..+.+++..|.+|+.
T Consensus 14 Rr~SN~~wa~ii~~G~l--GFll-~G~sSYl~~nll~~~ 49 (180)
T PF02392_consen 14 RRFSNYFWAFIIFLGGL--GFLL-VGISSYLGKNLLPFS 49 (180)
T ss_pred chHHHHHHHHHHHHhhH--HHHH-hHHHHHhCCCccccC
Confidence 55668999999999997 4444 345588888998875
No 90
>TIGR01337 apcB allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains.
Probab=46.92 E-value=35 Score=30.38 Aligned_cols=50 Identities=18% Similarity=0.275 Sum_probs=44.1
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 022611 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLM 126 (294)
Q Consensus 77 ~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm 126 (294)
..++=|+.|||+-++.-+-|+.-|+...+.+.++.+..++++..+|.++.
T Consensus 111 GlrE~y~~LgvP~~~~v~al~~mk~~~~~~~~~~~~~~~e~~~yFd~li~ 160 (167)
T TIGR01337 111 GLKETYNSLGVPIGPTVRAIQIMKEVIISLVGPDNDAGKEIGEPFDYMCS 160 (167)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcHhHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999998887778899999998874
No 91
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=45.90 E-value=1.3e+02 Score=22.82 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022611 236 LGKAAVITIGGLVAGAVVGSAVENWL 261 (294)
Q Consensus 236 lgRA~ll~~ggLv~G~llGs~l~~~l 261 (294)
+...+++++.|.++|.++|..+...+
T Consensus 48 ~~e~~~~~~~~~~~g~~~~~~~~~~~ 73 (121)
T PF02687_consen 48 LYEALLIALIGILIGILLGILLIIFL 73 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577788888888888877775543
No 92
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=44.76 E-value=87 Score=25.07 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=18.7
Q ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCC
Q 022611 84 LLGVSETASFDEILRAKNSIVANCKD 109 (294)
Q Consensus 84 vLGVs~~AS~eEIq~Ar~~l~~~y~~ 109 (294)
.-|..+-|++|||+.|-..-+++..|
T Consensus 8 L~~fePpaT~~EI~aAAlQyVRKvSG 33 (78)
T PF10041_consen 8 LRNFEPPATDEEIRAAALQYVRKVSG 33 (78)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHcc
Confidence 44678889999999995555555433
No 93
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=44.74 E-value=54 Score=33.18 Aligned_cols=19 Identities=16% Similarity=0.447 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHhhhcC
Q 022611 275 AAVVSEFILFSQFLVSLYLR 294 (294)
Q Consensus 275 ~~~vs~~~~~~lwlvssfLR 294 (294)
+.++..++|++-|+ ++|.|
T Consensus 93 ~~~i~~~vFi~~~~-atf~r 111 (406)
T PF11744_consen 93 PIVIGISVFIIGFI-ATFVR 111 (406)
T ss_pred hHHHHHHHHHHHHH-HHHHH
Confidence 44445555544444 33543
No 94
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=44.55 E-value=45 Score=30.69 Aligned_cols=37 Identities=24% Similarity=0.494 Sum_probs=28.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCC
Q 022611 231 RKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLG 270 (294)
Q Consensus 231 rK~k~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~ 270 (294)
||.-++.||+.+.+||+ |.++ ..+.+++..|++|+..
T Consensus 21 RR~SNy~wA~i~~~G~~--GFll-~g~sSYl~~~Llpf~~ 57 (188)
T PRK02542 21 RRLSNYLWASMVTIGGI--GFLL-AGLSSYLGRNLLPVGD 57 (188)
T ss_pred cchhHHHHHHHHHhhhH--HHHH-hhhHHhhCcCccccCC
Confidence 55669999999999987 4444 3455888889999753
No 95
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=41.82 E-value=38 Score=31.65 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=35.7
Q ss_pred hCCCCCCCHHHHHH--HHHHHHHHcCC----------CH-HHHHHHHHHHHHHHHHHHHHHhcCC
Q 022611 85 LGVSETASFDEILR--AKNSIVANCKD----------DQ-EAIAQVEAAYDMLLMRSLTQRRAGK 136 (294)
Q Consensus 85 LGVs~~AS~eEIq~--Ar~~l~~~y~~----------D~-~~~~~IEaAYD~Ilm~~L~~Rq~GK 136 (294)
=||..|+|.||++. |...+...+-+ .+ ...++=-.||..|-|++...|..|+
T Consensus 136 ~gip~Dss~ee~~~~~a~~q~~g~vmPi~~~~~~~~~r~it~eek~~~Ay~tLR~aR~~ar~~G~ 200 (212)
T PTZ00352 136 AGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGK 200 (212)
T ss_pred CCCCCCCCHHHHHHHHHHHhhcCceecccccccccccccCCHHHHHhhHHHHHHHHHHHHHHhhH
Confidence 47889999999998 65432211111 00 1233455899999999999999996
No 96
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=41.75 E-value=1.5e+02 Score=24.91 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 022611 235 KLGKAAVITIGGLVAGAVVGSAVENW 260 (294)
Q Consensus 235 ~lgRA~ll~~ggLv~G~llGs~l~~~ 260 (294)
++++++..++.-.++|.++.+...-.
T Consensus 62 sf~~a~~~g~~~~~ia~li~~v~~~i 87 (163)
T PF13858_consen 62 SFGQAFKVGFLISLIAGLISAVFQYI 87 (163)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999888887533
No 97
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=40.79 E-value=2.3e+02 Score=24.64 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=25.4
Q ss_pred CchHHHHHHHhhhhhhhhhhhhhhhH--HHHHHHHHHHHHHHHH
Q 022611 212 DVPGLILASSFGASLYFMTRKNVKLG--KAAVITIGGLVAGAVV 253 (294)
Q Consensus 212 ~~p~L~LAls~~a~iYfL~rK~k~lg--RA~ll~~ggLv~G~ll 253 (294)
+...+.++.-++.++|++.....++. .-+...++++++|.+.
T Consensus 124 ~~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a 167 (193)
T PF06738_consen 124 SWIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLA 167 (193)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 57788888878888888877644333 3344444444444433
No 98
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=40.74 E-value=1.3e+02 Score=23.57 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=33.8
Q ss_pred ChHHHHhhhhCCceecCCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHhhhhhhhhhhhhhhhHH
Q 022611 159 PQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGK 238 (294)
Q Consensus 159 P~Wlq~~lk~l~~~~~~Ps~~~L~~~a~if~~L~~~t~~~g~s~~~~~~~~~~~~p~L~LAls~~a~iYfL~rK~k~lgR 238 (294)
|+|+++.++.+ +.+++++|.+-.++.+... ...+....-.++....+.++ .|.|+++.
T Consensus 29 ~~~~~~~l~~v--------------p~avl~aLv~~~i~~~~~~-----~~~~~~~~~l~a~~~~~~~~---~~~~~~~~ 86 (99)
T PF05437_consen 29 PPRVRRFLRYV--------------PPAVLAALVVPSIFFPTGS-----LELSLGNPYLIAALVAALVA---LRTRNLLL 86 (99)
T ss_pred CHHHHHHHHHh--------------HHHHHHHHHHHHHccCccc-----cccccchHHHHHHHHHHHHH---HHHcchHH
Confidence 67888775532 3356777767666643210 01111333333443333333 24447877
Q ss_pred HHHHHHHHH
Q 022611 239 AAVITIGGL 247 (294)
Q Consensus 239 A~ll~~ggL 247 (294)
+++.+.+..
T Consensus 87 ~v~~G~~~~ 95 (99)
T PF05437_consen 87 SVLAGVAAF 95 (99)
T ss_pred HHHHHHHHH
Confidence 777666544
No 99
>COG5487 Small integral membrane protein [Function unknown]
Probab=40.69 E-value=48 Score=24.73 Aligned_cols=47 Identities=34% Similarity=0.442 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHHHhhhc
Q 022611 236 LGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYL 293 (294)
Q Consensus 236 lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvssfL 293 (294)
|-|++..-+.+|+.|.+=.+.+.. -..|+ .+ +-.+++++++++|.|.
T Consensus 2 l~waliFlvialIa~~lGFgGiag-------aaAgi---Ak-IlF~i~~vlf~vsL~~ 48 (54)
T COG5487 2 LRWALIFLVIALIAGALGFGGIAG-------AAAGI---AK-ILFFIFLVLFLVSLFA 48 (54)
T ss_pred hHHHHHHHHHHHHHHHhCcccHHH-------HHHhH---HH-HHHHHHHHHHHHHHHH
Confidence 346777888888888876666654 12244 33 3466778888888774
No 100
>PRK10441 iron-enterobactin transporter membrane protein; Provisional
Probab=40.42 E-value=1.1e+02 Score=29.92 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=43.1
Q ss_pred HHHHhhhhCCceecCCCccchhHHHHH-HHHHHHHHHHhcCCCCCCCCCCCCCchHH--HHHHHhhhhhhhhhhhhhhhH
Q 022611 161 WLQTSLKKSTVSVENPSTGDLGIQAGV-YGALMVLTYVNGTSTSSIAPYAGADVPGL--ILASSFGASLYFMTRKNVKLG 237 (294)
Q Consensus 161 Wlq~~lk~l~~~~~~Ps~~~L~~~a~i-f~~L~~~t~~~g~s~~~~~~~~~~~~p~L--~LAls~~a~iYfL~rK~k~lg 237 (294)
=+|...+| .+. |...+.+.+|. +++..+..++ +.. + ....+-+ .-++.....+|++.++.++-.
T Consensus 80 llQ~l~rN---pLA--~P~ilGissGA~l~~v~~~~~~-~~~----~---~~~~~~~a~~Gal~~~~lv~~l~~~~~~~~ 146 (335)
T PRK10441 80 LMQTLTRN---PLA--DPGLLGVNAGASFAIVLGAALF-GYS----S---AQEQLAMAFAGALVASLIVAFTGSQGGGQL 146 (335)
T ss_pred HHHHHhCC---CCC--CcchhhHHhHHHHHHHHHHHHH-hhh----h---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666555 233 44578877554 5544434332 210 0 0011212 222333345677765433223
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 022611 238 KAAVITIGGLVAGAVVGSAVE 258 (294)
Q Consensus 238 RA~ll~~ggLv~G~llGs~l~ 258 (294)
...-+.+.|++++.+++++..
T Consensus 147 ~~~~LiL~Gi~is~~~~a~~~ 167 (335)
T PRK10441 147 SPVRLTLAGVALAAVLEGLTS 167 (335)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 345578888888888887663
No 101
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=40.00 E-value=45 Score=28.17 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=19.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022611 224 ASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSA 256 (294)
Q Consensus 224 a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~ 256 (294)
+++.|+..+ +..+|.=+++|++++|.+++--
T Consensus 55 G~~~fl~~~--~~~~A~nwavgsF~l~s~~~we 85 (118)
T PF12597_consen 55 GGLRFLFTS--NPRKAANWAVGSFFLGSLGSWE 85 (118)
T ss_pred HhhhhcccC--CCccchhhhhHHHHHHHHHHHH
Confidence 445555555 5667777788777777765543
No 102
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=39.86 E-value=3.5e+02 Score=27.75 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=24.3
Q ss_pred CCchHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022611 211 ADVPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAV 257 (294)
Q Consensus 211 ~~~p~L~LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l 257 (294)
++++...+-.++..|++--...-.+..+-+++ |.++|.++|.+.
T Consensus 363 ~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~---G~l~~~~~a~~~ 406 (650)
T PF04632_consen 363 PSGATAVMMAAVVSSLFATLDNPAPALRLFLI---GALLGAVLAFLY 406 (650)
T ss_pred ChhHHHHHHHHHHHHHHcCCcChHHHHHHHHH---HHHHHHHHHHHH
Confidence 45677777677777777666654444444333 233344444444
No 103
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=38.75 E-value=66 Score=32.99 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 022611 91 ASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGK 136 (294)
Q Consensus 91 AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~GK 136 (294)
.|.+||.+|++++ |++..+.|+.|++.| +++.++|+.+
T Consensus 61 Vs~~ei~aA~~~v------~~~~~eai~~A~~~I--~~fH~~Q~p~ 98 (425)
T COG0141 61 VSAAEIDAAYQRL------DPEVKEALEVAAENI--EAFHEAQLPK 98 (425)
T ss_pred cCHHHHHHHHHhC------CHHHHHHHHHHHHHH--HHHHHhhCCC
Confidence 6889999998877 889999999999999 7888888874
No 104
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=38.14 E-value=55 Score=29.37 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=43.6
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH
Q 022611 77 SVENALKLLGVSETASFDEILRAKNSIVANCK-DDQEAIAQVEAAYDMLLM 126 (294)
Q Consensus 77 ~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~-~D~~~~~~IEaAYD~Ilm 126 (294)
..++=|+.|||+.++.-+-|+.-|+.-++.+. .|.+..+.|+.-+|.++.
T Consensus 112 GlrE~Y~~LgvP~~~~i~al~~mk~~~~~~~~~~~~~~~~~~~~yFd~l~~ 162 (169)
T CHL00089 112 GLKDTYNSLGVPIAPTVRSIELLKEIIKEEIKSQNIDAHDYIDEPFQYMIK 162 (169)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999988 466778899999998874
No 105
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=37.84 E-value=1.4e+02 Score=27.20 Aligned_cols=38 Identities=13% Similarity=-0.109 Sum_probs=30.6
Q ss_pred hhhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 022611 223 GASLY-FMTRKNVKLGKAAVITIGGLVAGAVVGSAVENW 260 (294)
Q Consensus 223 ~a~iY-fL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~~ 260 (294)
+.+.+ ..++-.+.++++++..+.|+++|.++.+.+..-
T Consensus 129 iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~ 167 (194)
T PF11833_consen 129 IYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPVD 167 (194)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44555 455667999999999999999999999988654
No 106
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=37.38 E-value=53 Score=33.21 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 022611 90 TASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGK 136 (294)
Q Consensus 90 ~AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~GK 136 (294)
.-|.+||++|++.+ |++..+.|+.||+.| +++.++|..+
T Consensus 36 ~vs~~ei~~A~~~~------~~~~~~ai~~A~~nI--~~fh~~q~~~ 74 (390)
T cd06572 36 RVSEEEIDAAYAAV------DPELKEAIELAAENI--RAFHEAQLPK 74 (390)
T ss_pred ccCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 45789999998776 899999999999999 6777777776
No 107
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=36.30 E-value=58 Score=33.00 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022611 91 ASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKV 137 (294)
Q Consensus 91 AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~GKi 137 (294)
-|.+||++|++.+ |++..+.|+.|++.| +++.++|+.+-
T Consensus 33 vs~~ei~~A~~~~------~~~~~~ai~~A~~~I--~~fh~~q~~~~ 71 (393)
T TIGR00069 33 VSEEEIEAAYAAV------DPELKEALELAAENI--RAFHEAQLPRS 71 (393)
T ss_pred cCHHHHHHHHHcC------CHHHHHHHHHHHHHH--HHHHHHhCCCC
Confidence 5789999998765 889999999999999 67777777653
No 108
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=35.75 E-value=2.1e+02 Score=23.32 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=11.2
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhhHHHHHHH
Q 022611 214 PGLILASSFGASLYFMTRKNVKLGKAAVIT 243 (294)
Q Consensus 214 p~L~LAls~~a~iYfL~rK~k~lgRA~ll~ 243 (294)
-++.++..+....+...-.+|+..+..+++
T Consensus 92 lGf~~at~~~~~~~~~~~g~r~~~~~~~~s 121 (141)
T PF07331_consen 92 LGFIIATFLFLFAFMLLLGERRWLRLLLIS 121 (141)
T ss_pred hhHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 334444333333333333333344433333
No 109
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=35.53 E-value=2.6e+02 Score=26.11 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 022611 235 KLGKAAVITIGGLVAGAVVG 254 (294)
Q Consensus 235 ~lgRA~ll~~ggLv~G~llG 254 (294)
+..|.+++++++..+..++|
T Consensus 211 ~~l~~~~~G~~aa~vsy~iG 230 (234)
T cd02433 211 SALRQLAIGGGAAAVTYLLG 230 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 110
>PRK11677 hypothetical protein; Provisional
Probab=35.01 E-value=37 Score=29.45 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 022611 241 VITIGGLVAGAVVGSAVENW 260 (294)
Q Consensus 241 ll~~ggLv~G~llGs~l~~~ 260 (294)
+++++||++|.++|-++.-+
T Consensus 4 ~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56778899999998888654
No 111
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.50 E-value=1.5e+02 Score=29.09 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 022611 235 KLGKAAVITIGGLVAGAVVGSAVE 258 (294)
Q Consensus 235 ~lgRA~ll~~ggLv~G~llGs~l~ 258 (294)
+-+-|++++++.|++||++.-.+-
T Consensus 118 s~~~Ai~isl~~l~~gWlvYd~lC 141 (300)
T PF06181_consen 118 SPWQAIAISLGSLVLGWLVYDGLC 141 (300)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888888888877773
No 112
>COG3162 Predicted membrane protein [Function unknown]
Probab=34.22 E-value=2e+02 Score=24.18 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=40.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-hhhhcccccCCCCCChhHHHHHHHHHHHHHHh
Q 022611 229 MTRKNVKLGKAAVITIGGLVAGAVVGSAVE-NWLQVDIVPFLGIHSPAAVVSEFILFSQFLVS 290 (294)
Q Consensus 229 L~rK~k~lgRA~ll~~ggLv~G~llGs~l~-~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvs 290 (294)
|.+|+++|.+..-+.+..+=+|.++-.... .||-.++.+. .. +-.....+..++.=|+++
T Consensus 18 Lv~kr~~Fa~~ltl~flv~Y~~filLiaf~~~~l~tp~~~~-~V-t~Gip~gvg~fv~tfVlt 78 (102)
T COG3162 18 LVRKRRRFAVPLTLIFLVVYFGFILLIAFAPGWLATPLFGA-SV-TRGIPFGVGVFVMTFVLT 78 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCcccCC-ce-ehhHhHHHHHHHHHHHHH
Confidence 468889999988888888877776665555 4887766653 12 335555555666666654
No 113
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=33.97 E-value=68 Score=32.87 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 022611 90 TASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGK 136 (294)
Q Consensus 90 ~AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~GK 136 (294)
.-|.+||++|++.+ |++.++.|+.|++.| +++.++|..+
T Consensus 57 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI--~~fh~~q~~~ 95 (426)
T PRK12447 57 RLSAAEIDAAVAKV------PEQVKEDIRFAQDQV--RRFAEAQRDS 95 (426)
T ss_pred ccCHHHHHHHHhhC------CHHHHHHHHHHHHHH--HHHHHHhcCC
Confidence 35789999998765 889999999999999 5677776654
No 114
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=33.97 E-value=1.2e+02 Score=28.93 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Q 022611 236 LGKAAVITIGGLVAGAVVGSAVENW 260 (294)
Q Consensus 236 lgRA~ll~~ggLv~G~llGs~l~~~ 260 (294)
+.-++++++.|.++|.++|.++..+
T Consensus 317 l~E~~~l~l~g~~~G~~lg~~~~~~ 341 (411)
T TIGR02212 317 IVQGLLIGVIGTLLGVILGVLLALN 341 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999888877544
No 115
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=33.95 E-value=66 Score=32.94 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022611 90 TASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKV 137 (294)
Q Consensus 90 ~AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~GKi 137 (294)
.-|.+||++|++.+ |++..+.|+.||+.| +++.++|..+-
T Consensus 64 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~~I--~~Fh~~q~~~~ 103 (425)
T PRK00877 64 RVSEEEIEAAYERL------DPELREALEEAAENI--RAFHEAQKPES 103 (425)
T ss_pred eeCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCCCC
Confidence 35789999998765 889999999999999 67777877754
No 116
>PRK13770 histidinol dehydrogenase; Provisional
Probab=33.62 E-value=69 Score=32.74 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022611 91 ASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKV 137 (294)
Q Consensus 91 AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~GKi 137 (294)
-|.+||++|++++ |++..+.|+.|++.| +++.++|..+-
T Consensus 57 Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI--~~fh~~q~~~~ 95 (416)
T PRK13770 57 ISHEQIKAAFDTL------DEKTKQALQQSYERI--KAYQESIKQTN 95 (416)
T ss_pred eCHHHHHHHHHcC------CHHHHHHHHHHHHHH--HHHHHHhCCCC
Confidence 4789999998876 888999999999999 56777776643
No 117
>PRK07668 hypothetical protein; Validated
Probab=33.42 E-value=4.4e+02 Score=25.22 Aligned_cols=143 Identities=13% Similarity=0.053 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccCCCCCCCCCCCCC-hHHHHhhhhCCcee
Q 022611 95 EILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVNPVGTPGMGPMP-QWLQTSLKKSTVSV 173 (294)
Q Consensus 95 EIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~GKiv~~~IRyAd~~~~~~~~~~~~P-~Wlq~~lk~l~~~~ 173 (294)
=+.+.++.|..+.-.|++..+-+++.-|.++ ..-++||-.. ..-+. .| .+.+++++..
T Consensus 9 fl~~L~~yL~~~glseeeieeiL~Ei~~hLl----EgQk~GkTA~---------~IfG~----sPk~yA~EL~~~~---- 67 (254)
T PRK07668 9 FLDDTRVYLIAKGIKEEDIESFLEDAELHLI----EGEKDGKTVE---------DIFGD----SPKEYANELVKEM---- 67 (254)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----HHHHcCCcHH---------HHhCC----CHHHHHHHHhccc----
Confidence 3455566666666666666667777666665 4557777421 11110 13 2455554321
Q ss_pred cCCCcc-chhHHHHHHHHHHHHHHHhcCCCCCCCC--CCCCCch--HHHHHHHhhhhhhhhhh-----hhhhhHHHHHHH
Q 022611 174 ENPSTG-DLGIQAGVYGALMVLTYVNGTSTSSIAP--YAGADVP--GLILASSFGASLYFMTR-----KNVKLGKAAVIT 243 (294)
Q Consensus 174 ~~Ps~~-~L~~~a~if~~L~~~t~~~g~s~~~~~~--~~~~~~p--~L~LAls~~a~iYfL~r-----K~k~lgRA~ll~ 243 (294)
+.+... -......+.+.++.|++..-.-..+.++ ...-+-. .+.+.++....+|++++ |..+..+...+.
T Consensus 68 ~~~~~~~~~~l~~~ii~~l~~~~i~~~~f~~~~~~~~~s~~~iig~~~~~~l~i~~~~~~~r~~~fk~~~~~~~~i~~~~ 147 (254)
T PRK07668 68 EVDRKENIKLILFIIIGILSFWIIANILFGNPNHPLTYSLIQLIGYPISLILTIIGLIFLLRMASFKSKLTEKWFLIIYL 147 (254)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeehHHhhHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 122212 2223355666777777633221000111 0001111 24555566666666653 223444555555
Q ss_pred HHHHHHHHHHHHHhh
Q 022611 244 IGGLVAGAVVGSAVE 258 (294)
Q Consensus 244 ~ggLv~G~llGs~l~ 258 (294)
.+....+++++..+-
T Consensus 148 ~~~~p~~l~i~i~~l 162 (254)
T PRK07668 148 VILIPMLLIVAIMFL 162 (254)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555556666665553
No 118
>CHL00036 ycf4 photosystem I assembly protein Ycf4
Probab=33.06 E-value=27 Score=31.98 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=27.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC
Q 022611 231 RKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFL 269 (294)
Q Consensus 231 rK~k~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~ 269 (294)
||.-++.||+.+.+||+ |.++ ..+.+++..|++|+.
T Consensus 17 RR~SNy~wA~i~~~G~~--GFll-~g~SSYl~~~Llpf~ 52 (184)
T CHL00036 17 RRISNFFWAFILFLGSL--GFLL-VGISSYLGKNLIPFL 52 (184)
T ss_pred cchhHHHHHHHHHhhhH--HHHH-hhhHHhhCcCccccC
Confidence 55669999999999987 4444 345588989999975
No 119
>PRK10720 uracil transporter; Provisional
Probab=32.71 E-value=2.3e+02 Score=28.45 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=30.3
Q ss_pred chHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022611 213 VPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAV 257 (294)
Q Consensus 213 ~p~L~LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l 257 (294)
.+.+.+++...+.+.+++++.|++.|.+-+ +.|+++|++++.++
T Consensus 155 ~~~~~lalv~l~iil~~~~~~kg~~~~~~i-LigIvvG~ila~~l 198 (428)
T PRK10720 155 SKTIIISMVTLAVTVLGSVLFRGFLAIIPI-LIGVLVGYALSFAM 198 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHhHH-HHHHHHHHHHHHHh
Confidence 456777776666666677777777775553 67777777776655
No 120
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=32.20 E-value=2.4e+02 Score=27.14 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022611 236 LGKAAVITIGGLVAGAVVGSAVENWL 261 (294)
Q Consensus 236 lgRA~ll~~ggLv~G~llGs~l~~~l 261 (294)
+.-++++++.|.++|.++|.++..++
T Consensus 315 ~~E~~~~~~~G~~~G~~lg~~l~~~l 340 (399)
T PRK10814 315 MVQGASAGIIGALLGALLGALLASQL 340 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578889989999999988775443
No 121
>PRK10692 hypothetical protein; Provisional
Probab=31.75 E-value=2.1e+02 Score=23.56 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=28.3
Q ss_pred hhhhhhHHHHHHHHHHH-HHHHHHHHHhhhhhhcccccCCCC---CChhHHHHHHHHHHHHHHhh
Q 022611 231 RKNVKLGKAAVITIGGL-VAGAVVGSAVENWLQVDIVPFLGI---HSPAAVVSEFILFSQFLVSL 291 (294)
Q Consensus 231 rK~k~lgRA~ll~~ggL-v~G~llGs~l~~~l~v~ivP~~~i---~sp~~~vs~~~~~~lwlvss 291 (294)
||...+---++.++|-+ .+|.+..+++. .+|-+++ -.-..+.++|+=.++||+..
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~------~i~~L~Lp~~~~~gal~~IFiGAllWL~GA 61 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVMVVGVGYSILN------QLPQLNLPQFFAHGALLSIFVGALLWLAGA 61 (92)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHH------hcccCCchHHHHhhHHHHHHHHHHHHHhcc
Confidence 44443333344444433 33444444443 3455555 01145677788889999754
No 122
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=31.67 E-value=1.1e+02 Score=29.43 Aligned_cols=41 Identities=10% Similarity=0.031 Sum_probs=25.3
Q ss_pred HHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022611 218 LASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVEN 259 (294)
Q Consensus 218 LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~ 259 (294)
-++.....+|++.+ .++-....-+.+.|.+++.+++++..-
T Consensus 109 Gal~~~~lv~~l~~-~~~~~~~~~liL~Gi~i~~~~~al~~~ 149 (311)
T PF01032_consen 109 GALLALLLVYLLSK-RRGGFSPLRLILAGIAISALFSALTSF 149 (311)
T ss_dssp HHHHHHHHHHHCHT--TTT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhc-ccCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 34455666777773 333345566778888888888877743
No 123
>PRK12495 hypothetical protein; Provisional
Probab=31.56 E-value=60 Score=30.65 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=26.3
Q ss_pred HHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 022611 97 LRA-KNSIVANCKDDQEAIAQVEAAYDMLLMR 127 (294)
Q Consensus 97 q~A-r~~l~~~y~~D~~~~~~IEaAYD~Ilm~ 127 (294)
|+| |.+|.++|..|+++++.++..-+.|+..
T Consensus 6 kEaEREkLREKye~d~~~R~~~~~ma~lL~~g 37 (226)
T PRK12495 6 KEAEREKLREKYEQDEQKREATERMSELLLQG 37 (226)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 355 8899999999999999999888887753
No 124
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=31.46 E-value=1.6e+02 Score=28.94 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=21.1
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 022611 222 FGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVE 258 (294)
Q Consensus 222 ~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~ 258 (294)
....+|++.+|.+ +. ..-+.+.|++++.+++++..
T Consensus 130 ~~~lv~~l~~~~~-~~-~~~liL~Gi~is~~~~Al~~ 164 (331)
T PRK03784 130 ITLILLRFARRHR-LS-TSRLLLAGVALGIICSALMT 164 (331)
T ss_pred HHHHHHHHHhcCC-CC-chhhhHHHHHHHHHHHHHHH
Confidence 4456677764432 22 22355888888888887653
No 125
>PRK01844 hypothetical protein; Provisional
Probab=31.42 E-value=70 Score=25.25 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 022611 236 LGKAAVITIGGLVAGAVVGSAVE 258 (294)
Q Consensus 236 lgRA~ll~~ggLv~G~llGs~l~ 258 (294)
+|-++++.+.+|++|.++|-++.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888999999998888874
No 126
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=31.41 E-value=2e+02 Score=23.06 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=35.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHHHhhhc
Q 022611 230 TRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYL 293 (294)
Q Consensus 230 ~rK~k~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvssfL 293 (294)
.+|.+.-.+++++.++++++.++..+.+... |-||..+- ..| ++.+ ....|++..||
T Consensus 12 ~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aI---n~iPll~~-llE-lvGl--gyt~wF~~ryL 68 (90)
T PF14159_consen 12 FDKYKRPLLTIGAIIAVIVALWVSAAVLDAI---NSIPLLPG-LLE-LVGL--GYTGWFVYRYL 68 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCcchHH-HHH-HHHH--HHHhHHHHHHH
Confidence 3556677778888888888888888888664 45564422 122 2322 35677777665
No 127
>PF13074 DUF3938: Protein of unknown function (DUF3938)
Probab=31.35 E-value=42 Score=27.16 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=34.5
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022611 214 PGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAV 257 (294)
Q Consensus 214 p~L~LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l 257 (294)
-.|.-|--+++.||||..-+.+--+..+++..|.+-|.+-.+.-
T Consensus 14 etlvsasilggyiyflfnpeenaqktmlltmigivggcisysmt 57 (102)
T PF13074_consen 14 ETLVSASILGGYIYFLFNPEENAQKTMLLTMIGIVGGCISYSMT 57 (102)
T ss_pred HHHHHHHHhcceEEEEEChhHhhhHHHHHHHHHHhcceeeeeee
Confidence 34445556789999999999989999999999988877655543
No 128
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=30.97 E-value=5.4e+02 Score=25.56 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=29.7
Q ss_pred chHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 022611 213 VPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAV 257 (294)
Q Consensus 213 ~p~L~LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l 257 (294)
.+.+.+++...+.+.+++++.|++.|... .+.++++|++++..+
T Consensus 162 ~~~~~vg~~~l~~~vl~~~~~~g~~~~~a-iLigiv~g~i~a~~l 205 (415)
T TIGR00801 162 LENLGVAFVVLALIILLNRFGKGFLKSIS-ILIGILVGYILALFM 205 (415)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHc
Confidence 34577888888888888888888766443 345556666665544
No 129
>PRK00523 hypothetical protein; Provisional
Probab=30.91 E-value=72 Score=25.18 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 022611 236 LGKAAVITIGGLVAGAVVGSAVE 258 (294)
Q Consensus 236 lgRA~ll~~ggLv~G~llGs~l~ 258 (294)
+|-++++.+.+|++|.++|-++.
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888899999998888874
No 130
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=30.84 E-value=1.6e+02 Score=30.31 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=32.1
Q ss_pred Hhhhhhhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccC-CCCCChhHHHHHHHH
Q 022611 221 SFGASLYFMTRKNV-KLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPF-LGIHSPAAVVSEFIL 283 (294)
Q Consensus 221 s~~a~iYfL~rK~k-~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~-~~i~sp~~~vs~~~~ 283 (294)
.+++.++++.||.+ +-|.-++ -.+++--++=++..++|.|...+ .++ +..|++|++.+
T Consensus 206 llf~iLl~l~rk~~~~~G~lf~----lYli~Ygi~RF~iEflR~d~~~~~~gl-~~~Q~lSl~~i 265 (460)
T PRK13108 206 LVFVALIYIDRRFIIGHGRLFG----FYVAFYCAGRFCVELLRDDPATLIAGI-RINSFTSTFVF 265 (460)
T ss_pred HHHHHHHHHHhccCCCCchHHH----HHHHHHHHHHHHhhhhccCchhhhcCc-cHHHHHHHHHH
Confidence 33444444544433 2354433 33444555566666777765433 357 77899887655
No 131
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=30.60 E-value=66 Score=26.64 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 022611 236 LGKAAVITIGGLVAGAVVGSAV 257 (294)
Q Consensus 236 lgRA~ll~~ggLv~G~llGs~l 257 (294)
++-...+++..|++|.++|-.-
T Consensus 70 ~~t~~~~tl~~lllGv~~G~~n 91 (100)
T TIGR02230 70 YPSPFSWTLTMLIVGVVIGCLN 91 (100)
T ss_pred cCCCcHHHHHHHHHHHHHHHHH
Confidence 4334455555666666655443
No 132
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=30.46 E-value=5e+02 Score=28.08 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHhhhhhhhhhhhhhhhHHHHHHH-HHHHHHHHHH
Q 022611 187 VYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKAAVIT-IGGLVAGAVV 253 (294)
Q Consensus 187 if~~L~~~t~~~g~s~~~~~~~~~~~~p~L~LAls~~a~iYfL~rK~k~lgRA~ll~-~ggLv~G~ll 253 (294)
...+..++-+..|| .++....+..++..|+|--.+.=....+.++++ +.|+.+|.+.
T Consensus 362 ai~~~~~fWI~TgW----------~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~ 419 (652)
T PRK10631 362 ATALGTLFWLWTGW----------TSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALY 419 (652)
T ss_pred HHHHHHHHHHHccC----------chHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566777 456777777777777777776666656555443 3444444444
No 133
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=30.43 E-value=1.6e+02 Score=28.07 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=31.4
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCh-hHHHHHHHHHHHHH
Q 022611 223 GASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSP-AAVVSEFILFSQFL 288 (294)
Q Consensus 223 ~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp-~~~vs~~~~~~lwl 288 (294)
..+.+++-++++...+.++.|..--.++|.+++.+..+... -+.++++- ..+.+ +.++++|+
T Consensus 205 ~~ly~~lP~~~~~~~~~~~~Ga~~aai~~~i~~~~f~~Yv~---~~~~y~~~YGalgs-vi~lmlw~ 267 (303)
T COG1295 205 FLLYRFLPNVRVLKWRDVLPGALLAAILFELGKYLFGYYLS---NFANYSSTYGALGS-VIILLLWL 267 (303)
T ss_pred HHHHHHcCCccccchHHhhhhHHHHHHHHHHHHHHHHHHHH---HhhhhhhhHHHHHH-HHHHHHHH
Confidence 33333444444444555666666666677777777666432 11122222 45555 44555554
No 134
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=30.35 E-value=3.5e+02 Score=23.19 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHHHh
Q 022611 235 KLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVS 290 (294)
Q Consensus 235 ~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvs 290 (294)
-++||..+ .|+++.||..|-++..+ +..-++...=.-+..+++.+.-+.+-...
T Consensus 74 vLAkAsa~-~GA~l~G~~~G~~~~~l-~~~~~~a~~~~~~~~~~~~~~~~~l~vaG 127 (138)
T PF11377_consen 74 VLAKASAL-AGALLAGWYAGQLVYLL-RHGELPAAREDLPGAIVAAVGAVALVVAG 127 (138)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHH-HcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666555 47788888888877554 32222322111335555555555554443
No 135
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=30.30 E-value=2.1e+02 Score=26.81 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=21.6
Q ss_pred HHHHHhhhhhhhhhhh-h----------------hhhHHHHHHHHHHHHHHHH
Q 022611 217 ILASSFGASLYFMTRK-N----------------VKLGKAAVITIGGLVAGAV 252 (294)
Q Consensus 217 ~LAls~~a~iYfL~rK-~----------------k~lgRA~ll~~ggLv~G~l 252 (294)
.+++|.-.++++++|= + ++.|++++++...+++|..
T Consensus 211 ~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i~~s~ltt~~gf~ 263 (333)
T PF03176_consen 211 LLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAILLSALTTAIGFG 263 (333)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455556788877642 1 2567777766666665543
No 136
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=30.08 E-value=83 Score=30.02 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=20.9
Q ss_pred HHHHhhhhhhhhhhhh-hhhHHHHHHHHHHHHHHHHHH
Q 022611 218 LASSFGASLYFMTRKN-VKLGKAAVITIGGLVAGAVVG 254 (294)
Q Consensus 218 LAls~~a~iYfL~rK~-k~lgRA~ll~~ggLv~G~llG 254 (294)
|.+++...+|++.+|. .+..+-.++.++--++|.++|
T Consensus 225 Lpl~~~~~~y~ll~kk~~~~~~~i~~~~vi~iv~~~~G 262 (264)
T PF03613_consen 225 LPLLLTLLVYWLLKKKKVSPTKLILIIIVIGIVGAALG 262 (264)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4455555566555554 677776666555555554444
No 137
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=30.03 E-value=1.9e+02 Score=23.50 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022611 237 GKAAVITIGGLVAGAVV 253 (294)
Q Consensus 237 gRA~ll~~ggLv~G~ll 253 (294)
.|=++++||.+++|.++
T Consensus 66 ~WN~~IGfg~~~~Gf~m 82 (87)
T PF06781_consen 66 NWNLAIGFGLMIVGFLM 82 (87)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45667777777777654
No 138
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.96 E-value=62 Score=27.68 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 022611 184 QAGVYGALMVLTY 196 (294)
Q Consensus 184 ~a~if~~L~~~t~ 196 (294)
.+.+||+|+++..
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3456776665544
No 139
>CHL00045 ccsA cytochrome c biogenesis protein
Probab=29.05 E-value=2.4e+02 Score=27.38 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=23.7
Q ss_pred HHHHhhhhhhhhhhhhhh-hHHH-HHHHHHHHHHHHHHHHHhhhhhhcccccCCCC
Q 022611 218 LASSFGASLYFMTRKNVK-LGKA-AVITIGGLVAGAVVGSAVENWLQVDIVPFLGI 271 (294)
Q Consensus 218 LAls~~a~iYfL~rK~k~-lgRA-~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i 271 (294)
.++|+..+++.+.+|+++ +++. ..+...|+ ..-.+.++.-|...+-.|..++
T Consensus 18 y~ls~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~ht~~l~~r~~~~g~~P~snl 71 (319)
T CHL00045 18 LSIVTLIYWITLLVDEIIGLYDSSEKGMIITF--FCITGLLVTRWIYSGHFPLSNL 71 (319)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCCccccch
Confidence 344455555544444443 4432 11111111 2233445556666666776655
No 140
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=28.81 E-value=2.3e+02 Score=26.56 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=14.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022611 232 KNVKLGKAAVITIGGLVAGAVVGSAVENWL 261 (294)
Q Consensus 232 K~k~lgRA~ll~~ggLv~G~llGs~l~~~l 261 (294)
|..++.-+=-+=+.-|+.|.++|++++..+
T Consensus 121 Rm~sLmTs~~~YlllLvgGli~GGLlA~~~ 150 (239)
T PF13105_consen 121 RMTSLMTSHYLYLLLLVGGLILGGLLAMLI 150 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333334455555556665544
No 141
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=28.70 E-value=76 Score=32.38 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022611 90 TASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAG 135 (294)
Q Consensus 90 ~AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~G 135 (294)
.-|.+||++|++.+ |++.++.|+.|+|.| +++.++|+.
T Consensus 49 ~Vs~~ei~~A~~~l------~~~~~~Ai~~A~~~I--~~fh~~q~~ 86 (412)
T PF00815_consen 49 RVSEEEIAAAYAKL------DPELREAIEQAAENI--RAFHEAQLP 86 (412)
T ss_dssp B--HHHHHHHHHHS-------HHHHHHHHHHHHHH--HHHHHTT--
T ss_pred EecHHHHHhhhhcC------CHHHHHHHHHHHHHH--HHHHHHhcC
Confidence 45889999999988 889999999999999 577777764
No 142
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=28.35 E-value=2.3e+02 Score=28.47 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 022611 239 AAVITIGGLVAGAVVGSAVENW 260 (294)
Q Consensus 239 A~ll~~ggLv~G~llGs~l~~~ 260 (294)
-++.+..||++|.+++.++.+-
T Consensus 80 ~ilf~tiGLiiGLlia~l~~~p 101 (356)
T COG4956 80 TILFGTIGLIIGLLIAVLLSSP 101 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 5678888999999999888763
No 143
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=27.91 E-value=1.5e+02 Score=24.23 Aligned_cols=55 Identities=29% Similarity=0.372 Sum_probs=28.7
Q ss_pred hhhhhhHHHHHHHHHHH-HHHHHHHHHhhhhhhcccccCCCC---CChhHHHHHHHHHHHHHHhh
Q 022611 231 RKNVKLGKAAVITIGGL-VAGAVVGSAVENWLQVDIVPFLGI---HSPAAVVSEFILFSQFLVSL 291 (294)
Q Consensus 231 rK~k~lgRA~ll~~ggL-v~G~llGs~l~~~l~v~ivP~~~i---~sp~~~vs~~~~~~lwlvss 291 (294)
||...+---++.++|-+ .+|.+-.+++.. +|-+++ -.-..+.++|+=.++||+..
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~~------~~~L~Lp~~~~~gal~~IFiGAllWL~GA 61 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMVVMVGGIGYSILSQ------IPQLGLPQFLAHGALFSIFIGALLWLVGA 61 (89)
T ss_pred chhhHHHhhHHHHHhHHHHHHhHHHHHHHh------cccCCCcHHHHhhHHHHHHHHHHHHHhcc
Confidence 44433333344444433 334444444433 354444 12256778888899999754
No 144
>PF15498 Dendrin: Nephrin and CD2AP-binding protein, Dendrin
Probab=27.68 E-value=80 Score=33.03 Aligned_cols=78 Identities=27% Similarity=0.401 Sum_probs=53.3
Q ss_pred cccCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCccccccccccccc---ccchhcccccccCCC--CCCCCCC--CCCcc
Q 022611 7 SVRPNRLSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLS---RRTLAASGVAKAGSR--ADDSAPF--EMSVE 79 (294)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~~--~~~~~pf--~m~~~ 79 (294)
.-||.|++.-..-|||++.+.++|-+ .-+-||++.+.-. -.-+.+++.++...+ =|-++|| --+.+
T Consensus 108 psrperlg~~Gr~pRp~aqpqs~pGa-------awagpwgGRrpGPPSYEAHLLLRGaAgtapRrRWDrPPPYVAPPSYe 180 (657)
T PF15498_consen 108 PSRPERLGPVGRPPRPSAQPQSDPGA-------AWAGPWGGRRPGPPSYEAHLLLRGAAGTAPRRRWDRPPPYVAPPSYE 180 (657)
T ss_pred CCChhhcccCCCCCCCcccccCCCcc-------cccccccCCCCCCccHHHHHHhhcccCccccccCCCCCCCCCCCccC
Confidence 44899999888899999998876643 2347898877642 233444554443333 2566677 56788
Q ss_pred chhhhhCCCCCC
Q 022611 80 NALKLLGVSETA 91 (294)
Q Consensus 80 dpYevLGVs~~A 91 (294)
.|...||-.++-
T Consensus 181 gPHRTLGtKRgp 192 (657)
T PF15498_consen 181 GPHRTLGTKRGP 192 (657)
T ss_pred CcccccccCCCC
Confidence 999999987753
No 145
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.67 E-value=88 Score=24.65 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 022611 235 KLGKAAVITIGGLVAGAVVGSAVE 258 (294)
Q Consensus 235 ~lgRA~ll~~ggLv~G~llGs~l~ 258 (294)
+++-++++.+.+|++|.+.|-++.
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fia 25 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999999998875
No 146
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=27.15 E-value=5.7e+02 Score=24.58 Aligned_cols=20 Identities=0% Similarity=0.018 Sum_probs=16.4
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 022611 87 VSETASFDEILRAKNSIVAN 106 (294)
Q Consensus 87 Vs~~AS~eEIq~Ar~~l~~~ 106 (294)
+++|++.+++++..+++.+.
T Consensus 72 l~~~~~~~~~~~l~~~l~~~ 91 (309)
T TIGR00439 72 LEKALAQSDADTVVSLLTRD 91 (309)
T ss_pred eCCCCCHHHHHHHHHHHhCC
Confidence 46899999999998887653
No 147
>KOG1558 consensus Fe2+/Zn2+ regulated transporter [Inorganic ion transport and metabolism]
Probab=26.84 E-value=1.5e+02 Score=29.23 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=37.2
Q ss_pred hHHHHHHHhhhhhh----------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 022611 214 PGLILASSFGASLY----------FMTRKNVKLGKAAVITIGGLVAGAVVGSAVENW 260 (294)
Q Consensus 214 p~L~LAls~~a~iY----------fL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~~ 260 (294)
-++.-++|.|..|| |.++|.+. .|.-+..+.++++|..+-++++-|
T Consensus 271 ~gvL~alAaGtliY~~lvElla~ef~~~~~~~-~~~~i~~~i~~~~G~alms~l~~w 326 (327)
T KOG1558|consen 271 SGVLEALAAGTLIYVALVELLAAEFANPKMQS-LKLQILKLIALLLGFALMSLLAIW 326 (327)
T ss_pred HHHHHHHhhhHhHHHHHHHHhHHHhcCchhhh-HHHHHHHHHHHHHhHHHHHHHHHh
Confidence 44556778888888 45677778 899999999999999998888776
No 148
>COG0730 Predicted permeases [General function prediction only]
Probab=26.31 E-value=3.2e+02 Score=24.79 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Q 022611 236 LGKAAVITIGGLVAGAVVGSAVENW 260 (294)
Q Consensus 236 lgRA~ll~~ggLv~G~llGs~l~~~ 260 (294)
-.|...+-..+-++|+.+|+.+..+
T Consensus 72 ~~~~~~~l~~~~~~G~~lG~~l~~~ 96 (258)
T COG0730 72 DWKLALILLLGALIGAFLGALLALL 96 (258)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444448899999777554
No 149
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.20 E-value=47 Score=28.05 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 022611 243 TIGGLVAGAVVGSAVENW 260 (294)
Q Consensus 243 ~~ggLv~G~llGs~l~~~ 260 (294)
+++|||+|.++|-++.-+
T Consensus 2 ~~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRL 19 (128)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 466777777777776543
No 150
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=25.65 E-value=4e+02 Score=22.32 Aligned_cols=22 Identities=18% Similarity=-0.001 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHHHHHHhhhcC
Q 022611 273 SPAAVVSEFILFSQFLVSLYLR 294 (294)
Q Consensus 273 sp~~~vs~~~~~~lwlvssfLR 294 (294)
+-+.++--+.-.++-++.+|.|
T Consensus 79 ~~~a~vwGvgqt~~~~i~sFtR 100 (105)
T PF10190_consen 79 TWEAMVWGVGQTILHLIISFTR 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777777777777777765
No 151
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=25.62 E-value=1.3e+02 Score=21.42 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 022611 235 KLGKAAVITIGGLVAGAVV 253 (294)
Q Consensus 235 ~lgRA~ll~~ggLv~G~ll 253 (294)
.++..-.+.+.++++|...
T Consensus 27 ~~~t~p~~~~~g~llG~~~ 45 (55)
T PF09527_consen 27 WFGTSPWFTLIGLLLGIAA 45 (55)
T ss_pred HcCCChHHHHHHHHHHHHH
Confidence 3344455555555555543
No 152
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=25.51 E-value=3.8e+02 Score=21.95 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=37.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHHHh
Q 022611 227 YFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVS 290 (294)
Q Consensus 227 YfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvs 290 (294)
+....++.++.+..++=+....+..+.-+.+.+|...+..+... -.++=.++|++.|+..
T Consensus 62 ~if~~e~~s~~~~~iiHf~~~~~~~~~~~~~~gW~~~~~~~~~~----~~~~fi~IYliIw~~~ 121 (136)
T PF11457_consen 62 LIFEIERWSLLKQTIIHFIITYAIFLILAYLLGWFPLSVISLLI----FILIFIIIYLIIWLIF 121 (136)
T ss_pred HHHcccchhHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHH----HHHHHHHHHHHHHHHH
Confidence 33334567899999999998888888888888897432222110 1112235667777764
No 153
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=25.49 E-value=2.7e+02 Score=23.32 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=35.1
Q ss_pred CchHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHHHh
Q 022611 212 DVPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVS 290 (294)
Q Consensus 212 ~~p~L~LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvs 290 (294)
....+.|++++.+-++++..-. --..+++.|++.+|..+| +=| |+..-|.++..++.++.|+..
T Consensus 35 ~iD~~ALv~aiiG~~~~~vn~~---~~~~~~~ig~~li~~~~G----------mRP--GYGr~E~~iG~iiA~l~~~l~ 98 (99)
T PF09877_consen 35 KIDKLALVLAIIGGLILAVNSP---SSPILYTIGAFLIGFPLG----------MRP--GYGRIETVIGLIIALLIYLLT 98 (99)
T ss_pred cccHHHHHHHHHHHHHHHhcCc---chhHHHHHHHHHHhhhcc----------CCC--CCCeehhhhhHHHHHHHHHHh
Confidence 3444555555555554443222 122334444444444333 224 666679999999999888864
No 154
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=25.24 E-value=3.1e+02 Score=25.04 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=13.8
Q ss_pred CchHHHHHHHhhh-hhhhhhhhhhh
Q 022611 212 DVPGLILASSFGA-SLYFMTRKNVK 235 (294)
Q Consensus 212 ~~p~L~LAls~~a-~iYfL~rK~k~ 235 (294)
+.-+.-+++++.. .+|++.|+-++
T Consensus 105 s~~Q~s~~lalln~~LW~lfDrT~s 129 (193)
T PF07281_consen 105 SSLQASITLALLNPGLWWLFDRTRS 129 (193)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCchh
Confidence 3444444455553 67788887653
No 155
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=25.22 E-value=5.2e+02 Score=26.32 Aligned_cols=41 Identities=12% Similarity=-0.008 Sum_probs=32.1
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 022611 214 PGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGS 255 (294)
Q Consensus 214 p~L~LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs 255 (294)
..+.+++.+...++.++++.|.+.|.+.+. .|+++||++..
T Consensus 171 ~~~~~a~~~l~~il~~~~~~~g~~~~~svL-iGiv~G~v~a~ 211 (433)
T PRK11412 171 PPFGLSVAVMCLVLAMIIFLPQRIARYSLL-VGTIVGWILWA 211 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHH
Confidence 456788899999999999888888866554 56778888755
No 156
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=25.19 E-value=4e+02 Score=24.31 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=30.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHH
Q 022611 227 YFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFL 288 (294)
Q Consensus 227 YfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwl 288 (294)
|.+-||.+..+-.++++++=. .++.-++..++ .++=|...+ +-+.++|++-+.+||=
T Consensus 89 ~~~l~k~~g~W~Gi~YG~~~W---~ivF~~lnP~f-p~~~~~~~l-~~nTiiT~~CiyiLyG 145 (173)
T PF11085_consen 89 YALLKKFKGPWPGILYGLAWW---AIVFFVLNPIF-PMIKPVTEL-DWNTIITTLCIYILYG 145 (173)
T ss_pred HHHHHHhcccchHHHHHHHHH---HHHHHHhcccc-cCChhhhhC-chhHHHHHHHHHHHHH
Confidence 356677776665555544221 12233332222 111122334 5599999999988884
No 157
>PRK14787 lipoprotein signal peptidase; Provisional
Probab=24.95 E-value=3.1e+02 Score=23.98 Aligned_cols=18 Identities=0% Similarity=-0.123 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 022611 275 AAVVSEFILFSQFLVSLY 292 (294)
Q Consensus 275 ~~~vs~~~~~~lwlvssf 292 (294)
+..+++-+.+++...+.+
T Consensus 139 D~~I~iGv~lll~~~~~~ 156 (159)
T PRK14787 139 DSAITIGACMLLLFHNRI 156 (159)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 556666555555555443
No 158
>COG3601 Predicted membrane protein [Function unknown]
Probab=24.93 E-value=4.2e+02 Score=24.48 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=24.5
Q ss_pred HHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022611 217 ILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQ 262 (294)
Q Consensus 217 ~LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~~l~ 262 (294)
....++...+|++.+|.|+... ...|+++|.++-++++..|.
T Consensus 84 iag~~fv~~~~~~~k~~ks~~~----~i~~~llgti~~t~~m~~LN 125 (186)
T COG3601 84 IAGGSFVLIAALIYKKKKSTKN----LIVGLLLGTIAMTVVMSLLN 125 (186)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3445777788888888874433 33444555555555554443
No 159
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=24.89 E-value=1.2e+02 Score=24.07 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 022611 234 VKLGKAAVITIGGLVAGAVVGSAV 257 (294)
Q Consensus 234 k~lgRA~ll~~ggLv~G~llGs~l 257 (294)
+-+.+-+++.+.++++|+++|...
T Consensus 7 ~~l~~l~~~~l~~~lvG~~~g~~~ 30 (90)
T PF11808_consen 7 RELWRLLLLLLAAALVGWLFGHLW 30 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 346666777777777777777665
No 160
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=24.88 E-value=4.6e+02 Score=25.59 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=41.9
Q ss_pred HHHHhhhhCCceecCCCccchhHHHHH-HHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHhhhhhhhhhhhhhhhHHH
Q 022611 161 WLQTSLKKSTVSVENPSTGDLGIQAGV-YGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKA 239 (294)
Q Consensus 161 Wlq~~lk~l~~~~~~Ps~~~L~~~a~i-f~~L~~~t~~~g~s~~~~~~~~~~~~p~L~LAls~~a~iYfL~rK~k~lgRA 239 (294)
-+|...+| .+. |...+.+.+|. +++..+..++ +... .. .-..-++.-++.....+|++.+|. ..
T Consensus 71 ~lQ~l~rN---pLA--~P~iLGissGA~l~~~l~~~~~-~~~~----~~-~~~~~a~iG~l~~~~lv~~l~~~~----~~ 135 (318)
T PRK09777 71 LVQGIVRN---PLA--SPDILGVNHAASLASVGALLLF-PSLP----VM-WLPLLAFIGGMAGLILLKMLAGTH----QP 135 (318)
T ss_pred HHHHHhCC---CCC--CCcHhhHHHHHHHHHHHHHHHH-HhhH----HH-HHHHHHHHHHHHHHHHHHHHHcCC----Cc
Confidence 56776655 233 44588887654 4433333332 2100 00 000112233333445667776542 35
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 022611 240 AVITIGGLVAGAVVGSAV 257 (294)
Q Consensus 240 ~ll~~ggLv~G~llGs~l 257 (294)
.-+.+.|.+++.+++++.
T Consensus 136 ~~liL~Giais~~~~al~ 153 (318)
T PRK09777 136 MKLALTGVALSALWASLT 153 (318)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 557888888888877765
No 161
>PRK11146 outer membrane-specific lipoprotein transporter subunit LolE; Provisional
Probab=24.60 E-value=2.2e+02 Score=27.56 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 022611 237 GKAAVITIGGLVAGAVVGSAVE 258 (294)
Q Consensus 237 gRA~ll~~ggLv~G~llGs~l~ 258 (294)
.-++++++.|.++|.++|.++.
T Consensus 319 ~e~~~~~~~g~~~G~~lg~~~~ 340 (412)
T PRK11146 319 WYGLLAGLKGSLIGVVIGVVVS 340 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888888888877663
No 162
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=24.51 E-value=2.1e+02 Score=27.78 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=35.3
Q ss_pred chhhhhCCCC-CCCHHHHHHHHHHHHHHcC-------CC-----------HHHHHHHHHHHHHHH
Q 022611 80 NALKLLGVSE-TASFDEILRAKNSIVANCK-------DD-----------QEAIAQVEAAYDMLL 125 (294)
Q Consensus 80 dpYevLGVs~-~AS~eEIq~Ar~~l~~~y~-------~D-----------~~~~~~IEaAYD~Il 125 (294)
+=++.||+++ +-|.||+++-.++++++.+ .| ++-.+++..+|+.+.
T Consensus 83 pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~ 147 (318)
T PF12725_consen 83 PLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLA 147 (318)
T ss_pred CHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHH
Confidence 3467899998 8999999999888777752 22 455778888888875
No 163
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=24.44 E-value=2.4e+02 Score=30.99 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022611 234 VKLGKAAVITIGGLVAGAVVGSAVENWL 261 (294)
Q Consensus 234 k~lgRA~ll~~ggLv~G~llGs~l~~~l 261 (294)
++++++..+.-.+..+|.++|..+.+++
T Consensus 140 ~~~~~a~~~~~~~~~ig~~igp~l~g~l 167 (1140)
T PRK06814 140 DELLGANALVEAGTFIAILLGTIIGGLA 167 (1140)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788777777777888887777765
No 164
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=24.27 E-value=2.1e+02 Score=31.21 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=23.1
Q ss_pred chHHH-HHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 022611 213 VPGLI-LASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVE 258 (294)
Q Consensus 213 ~p~L~-LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~ 258 (294)
.+-+. ..+++..+-+.|.++. ||.++..+.+++|.++-.+-+
T Consensus 30 s~yy~iagl~~l~~~~ll~~~k----~aal~lya~~~~~t~~wavwe 72 (773)
T COG4993 30 SWYYLIAGLVLLLSAWLLLRRK----RAALWLYALVLLGTLVWAVWE 72 (773)
T ss_pred chHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHhHHHhhh
Confidence 34443 3367777767666554 455566666666655544433
No 165
>COG5395 Predicted membrane protein [Function unknown]
Probab=24.16 E-value=2.2e+02 Score=24.62 Aligned_cols=61 Identities=20% Similarity=0.151 Sum_probs=41.4
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHH
Q 022611 223 GASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFL 288 (294)
Q Consensus 223 ~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwl 288 (294)
.+.+.+++.|+-++=|++...-..|-..--+.++. -| .|--..+. ||-.+.|.++++.+|=
T Consensus 26 lGav~~mR~KGt~lHr~LGrvWv~lM~atavSs~F-I~---ei~l~g~F-SpIHLLSi~~i~g~~~ 86 (131)
T COG5395 26 LGAVLMMRVKGTTLHRLLGRVWVALMGATAVSSLF-IH---EINLHGGF-SPIHLLSIFTIIGLPR 86 (131)
T ss_pred HhheeeeeccccHHHHHHHHHHHHHHHHHhhhhhe-ee---eeeeccCc-ChHHHHHHHHHHhhHH
Confidence 45677889999888888877776665444333333 11 22223456 8999999999998884
No 166
>KOG4330 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.15 E-value=5e+02 Score=24.14 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 022611 113 AIAQVEAAYDMLLMRSLTQRR 133 (294)
Q Consensus 113 ~~~~IEaAYD~Ilm~~L~~Rq 133 (294)
...+|..-||.||..+|-+--
T Consensus 162 rE~klReeyE~vLttKLaEQy 182 (206)
T KOG4330|consen 162 REIKLREEYEMVLTTKLAEQY 182 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777776543
No 167
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=24.05 E-value=1.4e+02 Score=26.30 Aligned_cols=35 Identities=20% Similarity=0.071 Sum_probs=20.2
Q ss_pred HHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 022611 216 LILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGA 251 (294)
Q Consensus 216 L~LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~ 251 (294)
||++|.+ ++|-.|.+|.-=+.=+++++++|+++|.
T Consensus 120 lQIaI~L-asit~Lt~~~~l~~~~~~~g~~G~~~~~ 154 (157)
T PF14235_consen 120 LQIAIVL-ASITALTKKKWLWYASLGLGAVGVAFFV 154 (157)
T ss_pred HHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3555544 4455566655444556667777766654
No 168
>TIGR02213 lolE_release lipoprotein releasing system, transmembrane protein LolE. This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane. In some species, the permease-like transmembrane protein is represented by two paralogs, LolC and LolE, both in the LolCDE complex. This family consists of LolE, as found in E. coli and related species.
Probab=23.69 E-value=2.3e+02 Score=27.47 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 022611 237 GKAAVITIGGLVAGAVVGSAVE 258 (294)
Q Consensus 237 gRA~ll~~ggLv~G~llGs~l~ 258 (294)
.-++++++.|.++|.++|.++.
T Consensus 318 ~e~~~l~~~G~~lG~~lg~~l~ 339 (411)
T TIGR02213 318 WYGLQAGMKGSLIGIVLGVIVA 339 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888888887664
No 169
>COG1289 Predicted membrane protein [Function unknown]
Probab=23.69 E-value=4.3e+02 Score=27.98 Aligned_cols=49 Identities=12% Similarity=-0.063 Sum_probs=29.9
Q ss_pred CCchHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022611 211 ADVPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVEN 259 (294)
Q Consensus 211 ~~~p~L~LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~ 259 (294)
.+.|...+.++.+++-=.+-....+..+-++.++.|++++.+++....+
T Consensus 33 l~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~~ 81 (674)
T COG1289 33 LPQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLAQ 81 (674)
T ss_pred CCCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3556666666666665344445556666667777777777766655533
No 170
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=23.64 E-value=2.4e+02 Score=23.84 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=32.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 022611 86 GVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRA 134 (294)
Q Consensus 86 GVs~~AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~ 134 (294)
||++..+.|=|++ +.++..-+++..+.+..||+.++.-||+...+
T Consensus 58 gi~~~~T~eRl~~----L~~~g~l~~~~~~~l~~A~~~l~~lRl~~q~~ 102 (145)
T PF10335_consen 58 GISETSTLERLEA----LAEAGVLSPDDAEDLIEAFEFLLGLRLRHQLE 102 (145)
T ss_pred CCCCCCHHHHHHH----HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665544 44455668899999999999999888876643
No 171
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=23.50 E-value=2.7e+02 Score=23.27 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=21.0
Q ss_pred HhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022611 221 SFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVEN 259 (294)
Q Consensus 221 s~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~ 259 (294)
++...+.+..+|++.+..-.++.+...+......+.+..
T Consensus 16 ~l~~l~~~~~~r~~~~l~f~l~~~~~~l~~~~~~g~~~~ 54 (205)
T PF07695_consen 16 ALYSLFLYLQRRDRSYLYFALYCLSVLLYFLILSGFLFQ 54 (205)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence 333444444457777776666666555555544444433
No 172
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=23.18 E-value=44 Score=18.14 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHH
Q 022611 113 AIAQVEAAYDML 124 (294)
Q Consensus 113 ~~~~IEaAYD~I 124 (294)
.+++|+.||+.|
T Consensus 2 ~~~~V~~aY~~l 13 (14)
T PF07709_consen 2 KFEKVKNAYEQL 13 (14)
T ss_pred cHHHHHHHHHhc
Confidence 356777777764
No 173
>PF04932 Wzy_C: O-Antigen ligase; InterPro: IPR007016 This group of bacterial proteins are membrane proteins, which include O-antigen ligases (e.g. P26471 from SWISSPROT) and putative hydrogen carbonate transporters [].
Probab=23.12 E-value=2.1e+02 Score=23.29 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=9.8
Q ss_pred chHHHHHHHhhhhhhhhhhhh
Q 022611 213 VPGLILASSFGASLYFMTRKN 233 (294)
Q Consensus 213 ~p~L~LAls~~a~iYfL~rK~ 233 (294)
+.-+.+.++++..+++..++.
T Consensus 17 ~~~i~~~~~~~~~~~~~~~~~ 37 (163)
T PF04932_consen 17 GAWIALLIALILFLLLFYRKR 37 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444433
No 174
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=22.78 E-value=2e+02 Score=20.36 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 022611 234 VKLGKAAVITIGGLVAGAVV 253 (294)
Q Consensus 234 k~lgRA~ll~~ggLv~G~ll 253 (294)
+..++.++.++..+++|.++
T Consensus 51 ~~~~~~l~~gi~~i~~Gi~~ 70 (72)
T PF03729_consen 51 KGWWWSLLSGILSIVLGIIL 70 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 46777888888888888764
No 175
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=22.74 E-value=3.2e+02 Score=22.22 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 022611 238 KAAVITIGGLVAGAVV 253 (294)
Q Consensus 238 RA~ll~~ggLv~G~ll 253 (294)
|=++++||-+++|.++
T Consensus 67 WN~~IGfg~~~~G~~m 82 (87)
T PRK02251 67 WNLVIGFGLIMAGFGM 82 (87)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4566777666666654
No 176
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.60 E-value=1.1e+02 Score=22.21 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 022611 239 AAVITIGGLVAGAVVGSAVE 258 (294)
Q Consensus 239 A~ll~~ggLv~G~llGs~l~ 258 (294)
-.++.++++++|.++|.++.
T Consensus 20 l~l~il~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 20 LGLLILIAFLLGALLGWLLS 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888887764
No 177
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=22.60 E-value=2.4e+02 Score=30.75 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=24.0
Q ss_pred HHHHhhhhhhhhhhh--h--------hhhHHHHHHHHHHHHHHHHHH
Q 022611 218 LASSFGASLYFMTRK--N--------VKLGKAAVITIGGLVAGAVVG 254 (294)
Q Consensus 218 LAls~~a~iYfL~rK--~--------k~lgRA~ll~~ggLv~G~llG 254 (294)
+.+|+=.+||+++|- + .+.|++++++...+++|...-
T Consensus 776 lGigVDy~I~~~~r~~~~~~~~~~~~~~~g~ai~~saltt~~gf~~l 822 (862)
T TIGR03480 776 LGLGVDFGIYMVHRWRNGVDSGNLLQSSTARAVFFSALTTATAFGSL 822 (862)
T ss_pred HhhhhhhHHHHHHHHHHhccchhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 333444677887762 2 256888888888887776443
No 178
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=22.56 E-value=2.6e+02 Score=27.21 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=30.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH-HHHhhhhhhcccccCCCC
Q 022611 232 KNVKLGKAAVITIGGLVAGAVV-GSAVENWLQVDIVPFLGI 271 (294)
Q Consensus 232 K~k~lgRA~ll~~ggLv~G~ll-Gs~l~~~l~v~ivP~~~i 271 (294)
|--+.-+|++++...-++|.++ |+.+..-+...+++...+
T Consensus 17 ~al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~~~ 57 (326)
T PF01384_consen 17 RALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPSYF 57 (326)
T ss_pred CccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhcccccccc
Confidence 4445667888888888999888 788887777778887655
No 179
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=22.15 E-value=7.6e+02 Score=26.48 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=42.7
Q ss_pred eecCCCccchhHH---HHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHH-Hhhhhhhhh---hhhhhhhHHHHHH-H
Q 022611 172 SVENPSTGDLGIQ---AGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILAS-SFGASLYFM---TRKNVKLGKAAVI-T 243 (294)
Q Consensus 172 ~~~~Ps~~~L~~~---a~if~~L~~~t~~~g~s~~~~~~~~~~~~p~L~LAl-s~~a~iYfL---~rK~k~lgRA~ll-~ 243 (294)
+...|..+++-.. +..|.++.++.+. +-+=+|.+.+ |+.+..|+- .+-.++++..+++ +
T Consensus 349 mY~iPkY~EidPt~~~a~~Fp~fFG~M~g-------------D~gyGlll~l~sl~l~~~~~~~~~~~~~~l~~~~~~~~ 415 (660)
T COG1269 349 MYGIPKYGEIDPTPFLALFFPLFFGIMFG-------------DLGYGLLLFLISLLLLRYFKKRLPEGLKKLGKILLYLG 415 (660)
T ss_pred HhcCCCCCCcCCcchHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 4556766666544 3446666666663 3356666555 444444433 2234577775544 5
Q ss_pred HHHHHHHHHHHHHhh
Q 022611 244 IGGLVAGAVVGSAVE 258 (294)
Q Consensus 244 ~ggLv~G~llGs~l~ 258 (294)
+...+.|.+.|+...
T Consensus 416 i~t~i~G~l~g~~fG 430 (660)
T COG1269 416 ISTIIWGFLYGEFFG 430 (660)
T ss_pred HHHHHHHHHhccccC
Confidence 556677888887775
No 180
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=21.79 E-value=5.2e+02 Score=22.28 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=30.2
Q ss_pred chHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 022611 213 VPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENW 260 (294)
Q Consensus 213 ~p~L~LAls~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~~ 260 (294)
.|++.+.+.+ +.+|.. -++...-++++-++...++|.++...+.-+
T Consensus 84 lP~~l~~~~~-~~~~~~-~~~~~~v~~~l~g~~~~~~gli~~~~~~l~ 129 (169)
T PF02417_consen 84 LPSFLLILLL-SPLYSR-FRENPWVQAFLKGVRPAVVGLILAAAIKLA 129 (169)
T ss_pred HHHHHHHHHH-HHHHHH-HcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666555532 333333 344677788888888999999888888543
No 181
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=21.64 E-value=2.4e+02 Score=20.05 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHH-HHHHHHhhh
Q 022611 248 VAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFIL-FSQFLVSLY 292 (294)
Q Consensus 248 v~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~-~~lwlvssf 292 (294)
++|+++|+.+.+.+-. .+ +..-.+-+++.+.. +++|+...+
T Consensus 5 iiGa~vGg~l~~~lg~--~~--~~~~~~~i~aviGAiill~i~~~i 46 (48)
T PF04226_consen 5 IIGAFVGGWLFGLLGI--NG--GGSWGSFIVAVIGAIILLFIYRLI 46 (48)
T ss_pred hHHHHHHHHHHHHhcc--cC--CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666554422 12 12112444444443 555655543
No 182
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=21.62 E-value=4.5e+02 Score=24.56 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=29.7
Q ss_pred HhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022611 221 SFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVEN 259 (294)
Q Consensus 221 s~~a~iYfL~rK~k~lgRA~ll~~ggLv~G~llGs~l~~ 259 (294)
++.+..|+-+|..-.+|+.+..++.||+++.++.-++.+
T Consensus 130 ~ls~~g~~tk~Dls~l~~~l~~aligLiiasvvn~Fl~s 168 (233)
T COG0670 130 ALSLYGYTTKRDLSSLGSFLFMALIGLIIASLVNIFLGS 168 (233)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334455666677779999999999999998887777744
No 183
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=21.43 E-value=1.9e+02 Score=22.29 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHh
Q 022611 90 TASFDEILRAKNSIVANCKD-DQEAIAQVEAAYDMLLMRSLTQRR 133 (294)
Q Consensus 90 ~AS~eEIq~Ar~~l~~~y~~-D~~~~~~IEaAYD~Ilm~~L~~Rq 133 (294)
|-+..||+..-.+|.++|.+ |..--+-|+---|.+--+|+++.+
T Consensus 3 Dqdqaeirl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkKK 47 (67)
T COG5481 3 DQDQAEIRLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKKK 47 (67)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 34566799999999999887 444445566666777767766543
No 184
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=21.10 E-value=1.7e+02 Score=20.36 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=13.8
Q ss_pred HHHhhhhhhhhhhhhhhhH
Q 022611 219 ASSFGASLYFMTRKNVKLG 237 (294)
Q Consensus 219 Als~~a~iYfL~rK~k~lg 237 (294)
.+|++..-|.|+||++.++
T Consensus 18 l~Glfv~Ay~QY~Rg~ql~ 36 (37)
T PF02529_consen 18 LAGLFVAAYLQYRRGNQLG 36 (37)
T ss_dssp HHHHHHHHHHHHCS--TTT
T ss_pred HHHHHHHHHHHHhcccccC
Confidence 3577888999999998775
No 185
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=21.03 E-value=2.9e+02 Score=22.04 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=21.5
Q ss_pred HHHHHhhhhhhhhh------hhhhhhHHHHHHHHHH
Q 022611 217 ILASSFGASLYFMT------RKNVKLGKAAVITIGG 246 (294)
Q Consensus 217 ~LAls~~a~iYfL~------rK~k~lgRA~ll~~gg 246 (294)
.|++|++.+-||.. ||++++.|-+++++.+
T Consensus 23 ll~iGl~fta~Ffiyevts~k~~r~i~kEl~~a~vA 58 (77)
T PF05251_consen 23 LLAIGLFFTAWFFIYEVTSTKKTRSIAKELLIALVA 58 (77)
T ss_pred HHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHHHH
Confidence 46677777777664 6788898888775543
No 186
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.02 E-value=1.1e+02 Score=28.74 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=21.3
Q ss_pred hhhhhhhhhh-hhhHHHHHHHHHHH-HHHHHHHHHhhhh
Q 022611 224 ASLYFMTRKN-VKLGKAAVITIGGL-VAGAVVGSAVENW 260 (294)
Q Consensus 224 a~iYfL~rK~-k~lgRA~ll~~ggL-v~G~llGs~l~~~ 260 (294)
.-+|.+.+|. ++++|..+.+|.+. +++.++|-++.+|
T Consensus 14 ~q~y~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~ 52 (224)
T PF13829_consen 14 WQAYKMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGSW 52 (224)
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 4567677765 57777666655443 4455555555444
No 187
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=21.01 E-value=91 Score=24.59 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=30.8
Q ss_pred CccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 022611 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMR 127 (294)
Q Consensus 77 ~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~ 127 (294)
=.+|||..++-=.+.+|+.+.+.- .+.+-+.+.-.+|.++-.-++.+
T Consensus 40 l~~nPY~L~~~i~gi~F~~aD~iA----~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 40 LKENPYRLIEDIDGIGFKTADKIA----LKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HHH-STCCCB-SSSSBHHHHHHHH----HTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHHChHHHHHHccCCCHHHHHHHH----HHcCCCCCCHHHHHHHHHHHHHH
Confidence 367999999955899998886653 34455555566777887777766
No 188
>PRK14769 lipoprotein signal peptidase; Provisional
Probab=20.74 E-value=4.7e+02 Score=22.99 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhh
Q 022611 247 LVAGAVVGSAVENW 260 (294)
Q Consensus 247 Lv~G~llGs~l~~~ 260 (294)
|++|.-+|.++.-+
T Consensus 95 lI~gGalGNliDR~ 108 (156)
T PRK14769 95 AVIGGALANVVDRA 108 (156)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555566666544
No 189
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=20.73 E-value=2e+02 Score=23.48 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 022611 238 KAAVITIGGLVAGAVV 253 (294)
Q Consensus 238 RA~ll~~ggLv~G~ll 253 (294)
|=++++||-+++|.++
T Consensus 67 WN~~IGFg~~i~G~lm 82 (87)
T PRK00159 67 WNYAIGFALMITGLLM 82 (87)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4455666666666554
No 190
>PRK11056 hypothetical protein; Provisional
Probab=20.61 E-value=4e+02 Score=22.97 Aligned_cols=64 Identities=9% Similarity=0.096 Sum_probs=39.0
Q ss_pred HHHhhhhhhhhhhhhhhh---HHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHH-HHHHHHH
Q 022611 219 ASSFGASLYFMTRKNVKL---GKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFI-LFSQFLV 289 (294)
Q Consensus 219 Als~~a~iYfL~rK~k~l---gRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~-~~~lwlv 289 (294)
-|+++.++|-|+++-.+- .-.-.++++++++|.+..|++.-- .-|-.|- +=+.++++ .+++|+.
T Consensus 41 lIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vra----eyPeiGS---NF~p~il~~~L~~Wi~ 108 (120)
T PRK11056 41 LIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLYSAFVRA----EYPEIGS---NFFPAVLSVILVFWIG 108 (120)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHh----cCccccc---chHHHHHHHHHHHHHH
Confidence 357788888888764321 224567889999999999998432 1254433 33333333 3566764
No 191
>PRK03612 spermidine synthase; Provisional
Probab=20.27 E-value=2.8e+02 Score=28.58 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCC
Q 022611 235 KLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGI 271 (294)
Q Consensus 235 ~lgRA~ll~~ggLv~G~llGs~l~~~l~v~ivP~~~i 271 (294)
+.|+.+.-..+.=.+|+++|+++..++.. |..|+
T Consensus 142 ~~g~~~g~ly~~ntlGa~~G~l~~~~vLl---p~lG~ 175 (521)
T PRK03612 142 HLGHNVATVLAADYLGALVGGLAFPFLLL---PRLGL 175 (521)
T ss_pred chhhhhhhhHhHHhHHHHHHHHHHHHHHH---Hhcch
Confidence 46666666666666777777777766543 65555
No 192
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=20.14 E-value=99 Score=23.35 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhhh
Q 022611 244 IGGLVAGAVVGSAVENW 260 (294)
Q Consensus 244 ~ggLv~G~llGs~l~~~ 260 (294)
+.|+++|+++|.++.-+
T Consensus 2 ~~g~l~Ga~~Ga~~glL 18 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLL 18 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45777788777777443
No 193
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=20.08 E-value=1.3e+02 Score=26.05 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHHH
Q 022611 243 TIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLV 289 (294)
Q Consensus 243 ~~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlv 289 (294)
...+++++|++++.+..|-. --.+ -+++ -.|++||++++|+
T Consensus 20 ~~~~~Ii~W~i~Gp~~~~sd--tWQL-viNt---~ttIitFlmvfLI 60 (132)
T PF04120_consen 20 IAVAVIIVWAISGPVFGFSD--TWQL-VINT---ATTIITFLMVFLI 60 (132)
T ss_pred HHHHHHHHHHHHhccccCcc--hHHH-HHcc---HHHHHHHHHHHHH
Confidence 34456778888877765510 0011 1433 4455577777765
No 194
>PRK10711 hypothetical protein; Provisional
Probab=20.02 E-value=3.4e+02 Score=25.60 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=26.9
Q ss_pred CchHHHHH---HHhhhhhhhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHhhhh
Q 022611 212 DVPGLILA---SSFGASLYFMTRKNVKLGKAAVIT-IGGLVAGAVVGSAVENW 260 (294)
Q Consensus 212 ~~p~L~LA---ls~~a~iYfL~rK~k~lgRA~ll~-~ggLv~G~llGs~l~~~ 260 (294)
+...+.|. ++++.-+|.+++..|+..+..+++ +.|-++|.+.+-++..+
T Consensus 60 ~~l~~lLgPAtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~ 112 (231)
T PRK10711 60 EVLNDLLQPAVVALAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALW 112 (231)
T ss_pred HHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444 456667777777777777766655 23333444444444333
Done!