BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022612
         (294 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D40|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
           From Streptomyces Wedmorensis Complexed With Diphosphate
 pdb|3D41|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
           From Streptomyces Wedmorensis Complexed With Mgamppnp
           And Fosfomycin
 pdb|3QUN|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
           From Streptomyces Wedmorensis Complexed With Mgatp
 pdb|3QUO|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
           From Streptomyces Wedmorensis Complexed With Atp And
           Fosfomycin
 pdb|3QUR|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
           From Streptomyces Wedmorensis Complexed With Mgadp And
           Fosfomycin Monophosphate
 pdb|3QVF|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
           From Streptomyces Wedmorensis Complexed With Mgadp And
           Fosfomycin Vanadate
 pdb|3QVH|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
           From Streptomyces Wedmorensis Complexed With Adp
          Length = 286

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 258 GVDSRILRADISKDIEHLVDVISSWMASNRSTKL 291
           G +  I+R D   D+E L    SSW A  RST++
Sbjct: 247 GAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRI 280


>pdb|2F6D|A Chain A, Structure Of The Complex Of A Glucoamylase From
           Saccharomycopsis Fibuligera With Acarbose
 pdb|2FBA|A Chain A, Glucoamylase From Saccharomycopsis Fibuligera At Atomic
           Resolution
 pdb|1AYX|A Chain A, Crystal Structure Of Glucoamylase From Saccharomycopsis
           Fibuligera At 1.7 Angstroms
          Length = 492

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 2   VIATPYASGFDYFYIADEVQLKADRCLRFLQETVQDLPTFGIGHSLGSVIHLLIGSRYAV 61
           VIA+P  S  DY+Y     Q   D  + FL   + +L       +L   +   I + Y +
Sbjct: 52  VIASPSTSNPDYYY-----QWTRDSAITFLT-VLSELEDNNFNTTLAKAVEYYINTSYNL 105

Query: 62  PRTGNILMAFNNR 74
            RT N   +F++ 
Sbjct: 106 QRTSNPSGSFDDE 118


>pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
           Binding Protein-43
          Length = 103

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 229 AVNRGSELIANLTIGTPWETITKEVSNSFGVDSRILRADISKDIE 273
           AV + S+LI    +G PW+T  +++   F     +L   + KD++
Sbjct: 11  AVQKTSDLIV---LGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK 52


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,531,807
Number of Sequences: 62578
Number of extensions: 272831
Number of successful extensions: 534
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 3
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)