BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022612
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6G1W2|SYL_BARHE Leucine--tRNA ligase OS=Bartonella henselae (strain ATCC 49882 /
Houston 1) GN=leuS PE=3 SV=1
Length = 880
Score = 38.1 bits (87), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 142 DLVKGREEFTPKPEETRRLIKSYYGISRNLLIKFKDDSIDE----TSTLAQVLSSDSAIS 197
DL+ G EE PE+ R + K++ G S+ LLI++ S +E + +V+ +
Sbjct: 208 DLLAGLEELEQWPEKVRIMQKNWIGKSQGLLIRWALKSTEEADEVCKSFDEVVCYSTRPD 267
Query: 198 SMLDMSIRMLPGDHGLPLQQALPDVPPAM 226
++ S L DH PL QAL A+
Sbjct: 268 TLFGASFLALSVDH--PLAQALAQKDKAL 294
>sp|Q6FYL6|SYL_BARQU Leucine--tRNA ligase OS=Bartonella quintana (strain Toulouse)
GN=leuS PE=3 SV=1
Length = 880
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 142 DLVKGREEFTPKPEETRRLIKSYYGISRNLLIKF---KDDSIDE-TSTLAQVLSSDSAIS 197
DL+ G EE PE+ R + K++ G S+ LLI++ + DE +V+ +
Sbjct: 208 DLLAGLEELEQWPEKVRTMQKNWIGKSQGLLIRWALKSTNGADEVCEAFNEVVCYSTRPD 267
Query: 198 SMLDMSIRMLPGDHGLPLQQALPDVPPAMADAVNRGSELIANLTIG 243
++ S L DH P+ QAL A+ S I N G
Sbjct: 268 TLFGASFLALSVDH--PISQALAQKDKAL-------SAFIENCRCG 304
>sp|A9IYY8|SYL_BART1 Leucine--tRNA ligase OS=Bartonella tribocorum (strain CIP 105476 /
IBS 506) GN=leuS PE=3 SV=1
Length = 886
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 142 DLVKGREEFTPKPEETRRLIKSYYGISRNLLIKF-----KDD---SIDETSTLAQVLSSD 193
DL+ G EE PE+ R + K++ G S+ LLI++ DD S D +V+
Sbjct: 210 DLLAGLEELDQWPEKVRTMQKNWIGKSQGLLIRWALKSTADDAGGSNDVCEAFDEVVCYS 269
Query: 194 SAISSMLDMSIRMLPGDHGLPLQQALPDVPPAMA 227
+ ++ S L DH P+ Q+L A+A
Sbjct: 270 TRPDTLFGASFLALSVDH--PIAQSLAKKDKALA 301
>sp|C3K4Q4|RSMJ_PSEFS Ribosomal RNA small subunit methyltransferase J OS=Pseudomonas
fluorescens (strain SBW25) GN=rsmJ PE=3 SV=1
Length = 260
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 198 SMLDMSIRMLPGDHGLPLQQALPDVP-PAMADAVNRGSELIANLTIGTPWETITKEVSNS 256
+ D + G+HGL LQQ PD P P D V G+ L G + I K V +
Sbjct: 35 QLADADFSLQVGEHGLQLQQLGPDAPGPVRVDFVEGGAAH-RRLYGGGSGQMIAKAVGIA 93
Query: 257 FGVDSRILRA 266
GV R+L A
Sbjct: 94 QGVRPRVLDA 103
>sp|P59015|VPS18_DANRE Vacuolar protein sorting-associated protein 18 homolog OS=Danio
rerio GN=vps18 PE=2 SV=2
Length = 974
Score = 32.7 bits (73), Expect = 3.2, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 112 EMTLKQLENLSPPIMKQVLPLVEQLPPLYMDLV------KGREE-FTPKPEETRRLIKSY 164
E +K+L NL P Q+ LV L LY++ + +G++ F EE R +KS
Sbjct: 471 EFLIKKLVNLKPSEKTQITLLVTWLTELYLNRLGQLEADEGKQHLFLETREEFRTFLKS- 529
Query: 165 YGISRNLLIKFKDDSIDETSTLAQVLSSDSAISSMLDMSIRM 206
K KD + ST+ +L+S + +M+ S+ M
Sbjct: 530 --------PKHKDCFYNNRSTIYDLLASHGDVDNMVYFSVIM 563
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 20/94 (21%)
Query: 112 EMTLKQLENLSPPIMKQVLPLVEQLPPLYMDLVKGREEFTPKPEETRRLIKSYYGISRNL 171
E+ LK L +LS + L+K EE KP ET +L+ YY I+ N
Sbjct: 621 ELCLKNLNDLSS-----------------LGLIKMDEEINFKPTETGKLMALYY-IAFNT 662
Query: 172 LIKFKDDSIDETSTLAQVLSSDSAISSMLDMSIR 205
F +I T TLA+++S S+ S D+ +R
Sbjct: 663 AKLFH--TIRGTETLAELVSLISSCSEFSDVQLR 694
>sp|Q9HQD6|HUTI_HALSA Probable imidazolonepropionase OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=hutI PE=3 SV=1
Length = 417
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 228 DAVNRGSE--LIANLT----IGTPWETITKEVSNSFGVDS----RILRADISKDIEHLVD 277
DAV S+ L+ANLT + T T EV +G+D+ R+L A + EH VD
Sbjct: 114 DAVRAASDAALVANLTAQLDVMLAHGTTTAEVKTGYGLDTETECRMLDAIAAAAAEHPVD 173
Query: 278 VISSWMASN 286
V+++++ ++
Sbjct: 174 VVTTFLGAH 182
>sp|B0R543|HUTI_HALS3 Probable imidazolonepropionase OS=Halobacterium salinarum (strain
ATCC 29341 / DSM 671 / R1) GN=hutI PE=3 SV=1
Length = 417
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 228 DAVNRGSE--LIANLT----IGTPWETITKEVSNSFGVDS----RILRADISKDIEHLVD 277
DAV S+ L+ANLT + T T EV +G+D+ R+L A + EH VD
Sbjct: 114 DAVRAASDAALVANLTAQLDVMLAHGTTTAEVKTGYGLDTETECRMLDAIAAAAAEHPVD 173
Query: 278 VISSWMASN 286
V+++++ ++
Sbjct: 174 VVTTFLGAH 182
>sp|A9CPT4|TDRD1_ORYLA Tudor domain-containing protein 1 OS=Oryzias latipes GN=tdrd1 PE=2
SV=1
Length = 1133
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 42 GIGHSLGSVIHLLIGSRYAVPRTGNILMAFNNREASVAIPLFSPVFVPMAQSI 94
G G+S +V LLI + YA P N L AS P PV P+ S
Sbjct: 549 GEGYSEINVAELLISANYAAPADSNTLQQTEETTASAEPPASPPVCEPLVWSC 601
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,742,273
Number of Sequences: 539616
Number of extensions: 4037065
Number of successful extensions: 12008
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 12003
Number of HSP's gapped (non-prelim): 21
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)