Query 022614
Match_columns 294
No_of_seqs 256 out of 1930
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 9E-29 2E-33 221.4 25.0 152 80-237 30-184 (223)
2 PF09335 SNARE_assoc: SNARE as 99.9 5.1E-21 1.1E-25 154.7 14.0 117 117-237 1-122 (123)
3 COG0586 DedA Uncharacterized m 99.9 5.5E-20 1.2E-24 163.3 20.7 156 85-244 3-169 (208)
4 PRK10847 hypothetical protein; 99.8 1.4E-19 3.1E-24 161.8 17.4 140 99-242 31-181 (219)
5 KOG3140 Predicted membrane pro 99.5 8.9E-14 1.9E-18 127.5 10.3 133 112-247 107-242 (275)
6 COG1238 Predicted membrane pro 99.4 1E-11 2.2E-16 105.8 14.5 146 86-239 7-156 (161)
7 PF06695 Sm_multidrug_ex: Puta 95.4 0.19 4.1E-06 40.9 9.8 96 130-229 14-119 (121)
8 TIGR02359 thiW thiW protein. L 90.1 4.8 0.0001 34.4 10.6 33 118-150 33-65 (160)
9 PRK01844 hypothetical protein; 88.7 1.2 2.5E-05 33.0 5.0 35 133-170 4-38 (72)
10 PF14143 YrhC: YrhC-like prote 86.4 5.8 0.00013 29.4 7.6 53 229-289 20-72 (72)
11 PRK00523 hypothetical protein; 84.8 2.5 5.4E-05 31.2 4.9 34 134-170 6-39 (72)
12 PRK12821 aspartyl/glutamyl-tRN 84.2 27 0.00059 34.7 13.2 27 120-146 99-125 (477)
13 PRK09609 hypothetical protein; 83.2 42 0.00092 31.8 18.3 23 217-239 171-193 (312)
14 PF03773 DUF318: Predicted per 81.6 46 0.001 31.1 14.0 114 136-281 18-138 (307)
15 PRK13661 hypothetical protein; 80.7 38 0.00082 29.5 13.6 33 118-150 39-71 (182)
16 PF03672 UPF0154: Uncharacteri 78.4 3.3 7.2E-05 29.9 3.6 29 138-169 2-30 (64)
17 COG3763 Uncharacterized protei 78.0 6.2 0.00013 29.0 4.9 35 133-170 4-38 (71)
18 PF07155 ECF-ribofla_trS: ECF- 76.4 4 8.7E-05 34.4 4.3 34 117-150 36-69 (169)
19 COG3086 RseC Positive regulato 74.5 7.8 0.00017 32.6 5.3 38 124-161 90-128 (150)
20 PRK11404 putative PTS system 73.7 1E+02 0.0023 31.0 18.4 22 216-237 400-421 (482)
21 COG2059 ChrA Chromate transpor 72.3 65 0.0014 28.4 10.9 88 188-282 50-138 (195)
22 PF04246 RseC_MucC: Positive r 71.6 12 0.00025 30.7 5.8 39 123-161 81-121 (135)
23 PRK11677 hypothetical protein; 69.6 10 0.00022 31.5 4.9 23 136-158 3-25 (134)
24 PF02417 Chromate_transp: Chro 69.5 66 0.0014 27.2 10.2 56 188-243 45-101 (169)
25 PF01102 Glycophorin_A: Glycop 66.6 9.4 0.0002 31.2 4.1 35 250-284 59-93 (122)
26 PF06305 DUF1049: Protein of u 63.6 15 0.00033 26.0 4.4 23 263-285 31-53 (68)
27 PF10337 DUF2422: Protein of u 62.9 1.6E+02 0.0035 29.0 14.0 32 203-234 147-178 (459)
28 PF06570 DUF1129: Protein of u 60.0 25 0.00055 30.9 6.0 55 216-283 148-202 (206)
29 PF11368 DUF3169: Protein of u 59.8 44 0.00096 30.2 7.7 19 214-232 8-26 (248)
30 PF06295 DUF1043: Protein of u 58.2 15 0.00033 30.0 3.9 22 138-159 1-22 (128)
31 COG4858 Uncharacterized membra 56.2 33 0.00073 30.2 5.8 28 132-159 123-150 (226)
32 PF12822 DUF3816: Protein of u 55.7 11 0.00023 31.7 2.8 32 118-149 30-61 (172)
33 COG3162 Predicted membrane pro 54.2 78 0.0017 24.9 7.0 34 255-288 62-95 (102)
34 PF01618 MotA_ExbB: MotA/TolQ/ 53.3 57 0.0012 26.6 6.7 31 257-288 103-133 (139)
35 TIGR00937 2A51 chromate transp 50.2 2.3E+02 0.005 27.3 11.3 55 188-242 37-92 (368)
36 COG4956 Integral membrane prot 49.9 2.4E+02 0.0052 27.0 13.6 23 142-164 43-65 (356)
37 TIGR02976 phageshock_pspB phag 48.4 14 0.0003 27.6 2.0 24 258-281 7-30 (75)
38 TIGR00261 traB pheromone shutd 46.8 2.9E+02 0.0062 27.0 11.6 36 54-92 240-275 (380)
39 PRK10862 SoxR reducing system 46.3 33 0.00071 29.0 4.2 25 136-160 103-127 (154)
40 PRK01844 hypothetical protein; 44.6 37 0.00081 25.1 3.7 29 257-285 7-36 (72)
41 KOG3415 Putative Rab5-interact 44.3 93 0.002 25.2 6.2 32 127-158 57-90 (129)
42 PF01810 LysE: LysE type trans 44.1 2E+02 0.0042 24.3 13.5 29 215-243 136-164 (191)
43 PF07290 DUF1449: Protein of u 43.8 1.7E+02 0.0038 25.9 8.6 34 135-168 93-126 (202)
44 PF11346 DUF3149: Protein of u 43.5 49 0.0011 21.9 3.8 26 261-286 16-41 (42)
45 PF04995 CcmD: Heme exporter p 43.1 68 0.0015 21.3 4.6 7 280-286 34-40 (46)
46 TIGR00383 corA magnesium Mg(2+ 42.7 60 0.0013 30.1 5.9 32 212-244 256-287 (318)
47 PF04341 DUF485: Protein of un 42.4 1.5E+02 0.0033 22.5 7.6 32 257-288 56-87 (91)
48 PF09512 ThiW: Thiamine-precur 42.2 42 0.00091 28.4 4.2 14 122-135 34-47 (150)
49 PF04995 CcmD: Heme exporter p 42.1 94 0.002 20.6 5.2 28 263-290 14-41 (46)
50 COG1422 Predicted membrane pro 40.3 2.1E+02 0.0046 25.4 8.4 20 254-273 45-64 (201)
51 PF01102 Glycophorin_A: Glycop 40.0 54 0.0012 26.8 4.4 25 126-156 67-91 (122)
52 TIGR03141 cytochro_ccmD heme e 39.4 90 0.002 20.6 4.7 8 280-287 32-39 (45)
53 TIGR03546 conserved hypothetic 38.5 2.5E+02 0.0053 23.8 8.9 40 186-225 22-64 (154)
54 COG3105 Uncharacterized protei 38.4 80 0.0017 26.1 5.1 26 135-160 7-32 (138)
55 PRK10712 PTS system fructose-s 38.2 4.7E+02 0.01 27.0 15.8 32 257-288 530-561 (563)
56 COG4615 PvdE ABC-type sideroph 38.2 4.3E+02 0.0093 26.5 11.4 21 193-213 105-126 (546)
57 PF06195 DUF996: Protein of un 37.9 2.3E+02 0.0051 23.4 9.3 31 258-288 75-105 (139)
58 PF03672 UPF0154: Uncharacteri 37.0 61 0.0013 23.4 3.8 24 261-284 4-28 (64)
59 PF12263 DUF3611: Protein of u 36.2 1.3E+02 0.0029 26.2 6.6 81 199-283 4-87 (183)
60 PF04971 Lysis_S: Lysis protei 35.9 62 0.0013 23.7 3.6 35 253-287 29-64 (68)
61 PRK00523 hypothetical protein; 35.2 64 0.0014 23.9 3.7 27 258-284 9-36 (72)
62 KOG2348 Urea transporter [Amin 35.1 71 0.0015 32.2 5.1 21 51-71 549-569 (667)
63 COG1238 Predicted membrane pro 35.1 83 0.0018 26.9 5.0 52 194-245 31-82 (161)
64 TIGR02741 TraQ type-F conjugat 35.1 86 0.0019 23.3 4.3 38 256-293 37-74 (80)
65 COG2851 CitM H+/citrate sympor 35.0 48 0.001 32.4 3.8 79 211-289 132-211 (433)
66 PF03613 EIID-AGA: PTS system 34.7 3.7E+02 0.008 24.8 11.3 99 127-232 130-231 (264)
67 COG4956 Integral membrane prot 34.7 3.5E+02 0.0076 25.9 9.3 32 139-170 44-78 (356)
68 PF06667 PspB: Phage shock pro 34.0 35 0.00076 25.4 2.2 21 261-281 10-30 (75)
69 PF15048 OSTbeta: Organic solu 33.7 56 0.0012 26.8 3.5 29 252-280 32-60 (125)
70 PRK14472 F0F1 ATP synthase sub 33.6 59 0.0013 27.7 3.9 44 123-168 7-50 (175)
71 PF01148 CTP_transf_1: Cytidyl 32.8 33 0.00072 30.4 2.4 26 135-160 131-156 (259)
72 PF05568 ASFV_J13L: African sw 32.8 88 0.0019 26.4 4.6 10 275-284 50-59 (189)
73 PRK11056 hypothetical protein; 32.7 45 0.00097 27.1 2.8 22 261-282 94-115 (120)
74 PF10389 CoatB: Bacteriophage 32.2 86 0.0019 21.2 3.6 22 260-281 24-45 (46)
75 COG4597 BatB ABC-type amino ac 31.8 4.5E+02 0.0097 25.2 9.5 28 260-287 190-217 (397)
76 TIGR00937 2A51 chromate transp 31.5 4.8E+02 0.01 25.1 11.2 67 177-243 232-301 (368)
77 PF02673 BacA: Bacitracin resi 31.2 4.2E+02 0.009 24.3 15.9 83 195-284 158-242 (259)
78 PRK14402 membrane protein; Pro 30.9 3.8E+02 0.0081 23.7 14.3 61 137-198 7-77 (198)
79 PF13807 GNVR: G-rich domain o 30.9 74 0.0016 23.5 3.6 25 117-141 55-79 (82)
80 COG4064 MtrG Tetrahydromethano 30.7 91 0.002 23.0 3.8 23 127-149 51-73 (75)
81 PRK13727 conjugal transfer pil 30.5 1.1E+02 0.0024 22.8 4.3 38 256-293 37-74 (80)
82 COG3037 SgaT Uncharacterized p 30.4 60 0.0013 32.4 3.8 38 116-153 312-354 (481)
83 PF07226 DUF1422: Protein of u 30.3 1E+02 0.0022 24.9 4.4 27 256-282 89-115 (117)
84 PF14880 COX14: Cytochrome oxi 30.0 1.3E+02 0.0029 21.0 4.6 16 277-292 42-57 (59)
85 PF00474 SSF: Sodium:solute sy 29.7 4.5E+02 0.0098 25.0 9.8 42 118-159 23-65 (406)
86 PF02009 Rifin_STEVOR: Rifin/s 29.4 69 0.0015 30.2 3.9 14 268-281 272-285 (299)
87 PF07172 GRP: Glycine rich pro 29.2 91 0.002 24.2 3.9 11 262-272 9-19 (95)
88 PRK11085 magnesium/nickel/coba 28.9 1.2E+02 0.0027 28.7 5.5 30 213-243 255-284 (316)
89 PF13829 DUF4191: Domain of un 28.8 3.9E+02 0.0084 24.2 8.3 46 122-169 41-87 (224)
90 PF13488 Gly-zipper_Omp: Glyci 28.8 1.8E+02 0.0039 19.4 5.0 33 125-157 8-42 (46)
91 PF10883 DUF2681: Protein of u 28.7 1.1E+02 0.0024 23.5 4.2 9 280-288 30-38 (87)
92 PRK10478 putative PTS system f 28.6 92 0.002 30.2 4.7 26 258-283 314-339 (359)
93 PF08114 PMP1_2: ATPase proteo 28.4 1.5E+02 0.0032 19.6 4.1 27 258-284 13-39 (43)
94 PRK03818 putative transporter; 28.4 6.6E+02 0.014 25.7 11.4 20 263-282 167-186 (552)
95 PF01544 CorA: CorA-like Mg2+ 27.9 17 0.00036 32.8 -0.5 29 214-243 234-262 (292)
96 PRK09546 zntB zinc transporter 27.7 1.1E+02 0.0024 28.6 5.1 30 214-244 264-293 (324)
97 TIGR03141 cytochro_ccmD heme e 27.5 1.9E+02 0.004 19.1 5.3 22 268-289 23-44 (45)
98 TIGR03745 conj_TIGR03745 integ 27.4 2.8E+02 0.006 22.1 6.3 58 217-276 40-99 (104)
99 PRK12489 anaerobic C4-dicarbox 27.2 6.4E+02 0.014 25.2 14.1 16 157-172 73-88 (443)
100 TIGR02840 spore_YtaF putative 27.2 4.3E+02 0.0094 23.2 8.8 40 203-243 17-58 (206)
101 PF01914 MarC: MarC family int 27.0 3.3E+02 0.0071 23.9 7.6 56 112-168 118-174 (203)
102 PF13268 DUF4059: Protein of u 26.6 51 0.0011 24.3 1.9 22 269-290 23-44 (72)
103 PF09835 DUF2062: Uncharacteri 26.3 3.7E+02 0.008 22.1 13.0 38 193-231 32-72 (154)
104 PF12732 YtxH: YtxH-like prote 26.2 1.1E+02 0.0024 22.2 3.7 28 140-167 6-33 (74)
105 COG4854 Predicted membrane pro 26.1 1.7E+02 0.0036 23.7 4.9 25 266-290 36-60 (126)
106 COG5524 Bacteriorhodopsin [Gen 26.0 2.5E+02 0.0055 26.3 6.8 76 197-289 114-189 (285)
107 COG0591 PutP Na+/proline sympo 24.7 7.1E+02 0.015 24.9 18.1 37 121-157 58-95 (493)
108 TIGR00915 2A0602 The (Largely 24.6 7E+02 0.015 27.6 11.1 12 219-230 978-989 (1044)
109 PRK09458 pspB phage shock prot 24.6 35 0.00076 25.5 0.8 33 261-293 10-44 (75)
110 PF08006 DUF1700: Protein of u 24.5 4.4E+02 0.0094 22.3 11.4 27 134-161 142-168 (181)
111 PF05552 TM_helix: Conserved T 24.0 1.4E+02 0.0031 20.1 3.8 30 256-285 13-42 (53)
112 PF06695 Sm_multidrug_ex: Puta 23.9 3.3E+02 0.0072 21.8 6.5 50 130-179 8-59 (121)
113 COG2261 Predicted membrane pro 23.7 2E+02 0.0044 21.8 4.7 36 123-158 40-80 (82)
114 KOG2385 Uncharacterized conser 23.7 33 0.00072 34.8 0.7 60 94-159 251-311 (633)
115 PRK00068 hypothetical protein; 23.7 1E+03 0.022 26.4 16.9 30 205-234 156-185 (970)
116 PF09679 TraQ: Type-F conjugat 23.6 1.4E+02 0.003 23.0 3.8 22 268-289 49-70 (93)
117 PF12072 DUF3552: Domain of un 23.4 1.4E+02 0.003 26.2 4.5 24 136-159 3-26 (201)
118 COG1030 NfeD Membrane-bound se 23.3 6.4E+02 0.014 25.1 9.4 39 25-64 201-239 (436)
119 PF09577 Spore_YpjB: Sporulati 23.0 2.9E+02 0.0063 25.1 6.5 28 253-280 197-224 (232)
120 TIGR02121 Na_Pro_sym sodium/pr 22.7 7.5E+02 0.016 24.4 21.2 35 123-157 58-93 (487)
121 COG0598 CorA Mg2+ and Co2+ tra 22.1 94 0.002 29.2 3.4 31 212-243 260-290 (322)
122 PF14163 SieB: Superinfection 21.6 3.5E+02 0.0076 22.3 6.5 28 116-143 14-45 (151)
123 PRK11624 cdsA CDP-diglyceride 21.5 58 0.0013 30.3 1.8 32 136-167 154-186 (285)
124 COG0575 CdsA CDP-diglyceride s 21.5 60 0.0013 29.7 1.9 31 136-166 136-167 (265)
125 PRK11463 fxsA phage T7 F exclu 21.1 4.8E+02 0.01 21.8 7.2 47 121-167 17-63 (148)
126 PRK10995 inner membrane protei 21.0 5.9E+02 0.013 22.5 8.5 57 111-168 125-188 (221)
127 PF10063 DUF2301: Uncharacteri 21.0 2.4E+02 0.0051 23.5 5.1 40 123-162 85-124 (135)
128 PRK10847 hypothetical protein; 21.0 5.8E+02 0.013 22.5 8.6 24 138-161 73-96 (219)
129 PRK09430 djlA Dna-J like membr 20.7 1.5E+02 0.0033 27.3 4.4 17 142-158 17-33 (267)
130 PF04226 Transgly_assoc: Trans 20.1 2.8E+02 0.0061 18.5 4.5 22 136-157 25-46 (48)
131 PF06341 DUF1056: Protein of u 20.1 2.5E+02 0.0054 20.3 4.4 43 200-242 14-56 (63)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=9e-29 Score=221.38 Aligned_cols=152 Identities=22% Similarity=0.409 Sum_probs=135.0
Q ss_pred ccccchHHHHHHH-HccchhHHHHHHHHHHHhhhccCcCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 022614 80 FMDKEVIPIINWE-TTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFL 158 (294)
Q Consensus 80 ~~~~~l~~l~~wi-~~~~~~pvl~ill~~~~~~~P~~~iP~~~l~~~aG~lfG~~~G~l~~~iG~~lG~~i~f~igR~~g 158 (294)
....+.+.+++|+ +.+.++|.++.+++...+.+|+ +|++++++++|++||+++|++++++|+++||+++|+++|+++
T Consensus 30 ~~~~~~~~l~~~i~~~g~~~pl~~fil~~l~~~~~~--iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~g 107 (223)
T COG0398 30 VLLLDPETLREWIQAYGALGPLVFFILLYLVATLPI--IPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLG 107 (223)
T ss_pred HhccCHHHHHHHHHHcCchHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456889999999 5577888885454444444554 899999999999999999999999999999999999999999
Q ss_pred HH-HHHHhhhchHHHHHHHHHhcCCcchhhHHHHHHhccc-cchhhHHHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHH
Q 022614 159 HR-IQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTG 236 (294)
Q Consensus 159 ~~-i~~~l~~~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~P-~P~~l~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G 236 (294)
++ .+++.+++++.+++++..++ +|++.++++|++| +|++++||++|++++++++|.++|.+|++|++++|+++|
T Consensus 108 r~~~~~~~~~~~~~~~~~~~~~~----~g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G 183 (223)
T COG0398 108 RDWVLKFVGGKEKVQRIDAGLER----NGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLG 183 (223)
T ss_pred HHHHHHHhcccHHHHHHHHHHHh----CChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHH
Confidence 97 88888888888889888875 6899999999999 699999999999999999999999999999999999999
Q ss_pred H
Q 022614 237 I 237 (294)
Q Consensus 237 ~ 237 (294)
+
T Consensus 184 ~ 184 (223)
T COG0398 184 S 184 (223)
T ss_pred H
Confidence 7
No 2
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.86 E-value=5.1e-21 Score=154.69 Aligned_cols=117 Identities=30% Similarity=0.469 Sum_probs=104.1
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHhhhchHHHH---HHHHHhcCCcchhhHHHHH
Q 022614 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAA---ILRAAGEGNWFHQFRTVAL 192 (294)
Q Consensus 117 iP~~~l~~~aG~lfG~~~G~l~~~iG~~lG~~i~f~igR~~g~~-i~~~l~~~~~~~~---~~~~~~~~~~~~g~~~v~l 192 (294)
+|++++++++|++||++.|++++.+|+++|+.++|++||+++++ ..++..++++.++ .++..+ +++.+.+++
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~l~~ 76 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQ----KYGFWVLFL 76 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHh----hhhHHHHHH
Confidence 59999999999999999999999999999999999999999964 6666655555555 444444 478999999
Q ss_pred Hhccc-cchhhHHHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHHH
Q 022614 193 IRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTGI 237 (294)
Q Consensus 193 ~Rl~P-~P~~l~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G~ 237 (294)
.|++| +|++++||++|++++|+++|+.++++|.+|++.+++++|+
T Consensus 77 ~~~~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~ 122 (123)
T PF09335_consen 77 SRFIPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGY 122 (123)
T ss_pred HHHHHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999 5999999999999999999999999999999999999986
No 3
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.86 E-value=5.5e-20 Score=163.32 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=124.9
Q ss_pred hHHHHHHHHc-cchhHHHHHHHHHHHhhhccCcCChHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 022614 85 VIPIINWETT-TFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTF-----GYGFGFLLIMSAVAVGISLPYFIGSHFL 158 (294)
Q Consensus 85 l~~l~~wi~~-~~~~pvl~ill~~~~~~~P~~~iP~~~l~~~aG~lf-----G~~~G~l~~~iG~~lG~~i~f~igR~~g 158 (294)
.+.+..+.++ .+.++.+++.++.....+....+|++++++++|++- +++...+.+++|+++|+.+.|++||++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G 82 (208)
T COG0586 3 MELLILWIQEGSLGYLGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFG 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555533 456677777777654333333489999999999984 4578899999999999999999999999
Q ss_pred HH-HHHHhh----hchHHHHHHHHHhcCCcchhhHHHHHHhccccchhhHHHHHhhcCCCchhHHHHHHHhHHHHHHHHH
Q 022614 159 HR-IQGWLE----KYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTI 233 (294)
Q Consensus 159 ~~-i~~~l~----~~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~P~P~~l~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~ 233 (294)
++ .+++.+ ++++.++.+++.+ |||.+++++.|++|.-++++++.||+++||+++|.+.+++|.+.|..+++
T Consensus 83 ~~~l~~~~~~~~~~~~~l~~a~~~f~----r~G~~~vf~~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~ 158 (208)
T COG0586 83 RKLLRKLWSYRLLKRKKLDKAELLFE----RHGLFAIFLGRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLT 158 (208)
T ss_pred HHHHHhhhhhccCCHHHHHHHHHHHH----HcCchhhhhhcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHH
Confidence 87 444444 2334455555555 58999999999999879999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 022614 234 YTGILIRTLAD 244 (294)
Q Consensus 234 ~~G~~~~~l~~ 244 (294)
+.|...++..+
T Consensus 159 ~lGy~~G~~~~ 169 (208)
T COG0586 159 LLGYLLGEVID 169 (208)
T ss_pred HHHHHhccchH
Confidence 99999987655
No 4
>PRK10847 hypothetical protein; Provisional
Probab=99.83 E-value=1.4e-19 Score=161.83 Aligned_cols=140 Identities=21% Similarity=0.304 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhhhccCcCChHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHhh---h
Q 022614 99 PVLAVLVFASVALFPTLLLPSSPSMWVAGMTFG-------YGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLE---K 167 (294)
Q Consensus 99 pvl~ill~~~~~~~P~~~iP~~~l~~~aG~lfG-------~~~G~l~~~iG~~lG~~i~f~igR~~g~~-i~~~l~---~ 167 (294)
.+++++.+....+.+..++|++.+.+++|++.+ .+..++.+++|+++|+.++|++||++|++ +.++.+ +
T Consensus 31 ~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~~~~~~~ 110 (219)
T PRK10847 31 AILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFR 110 (219)
T ss_pred HHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhccccccCC
Confidence 346666665432222234899999999998865 35678999999999999999999999998 433222 2
Q ss_pred chHHHHHHHHHhcCCcchhhHHHHHHhccccchhhHHHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 022614 168 YPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTGILIRTL 242 (294)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~P~P~~l~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l 242 (294)
+++.++.++..+ |||.+.+++.|++|+-++++++++|+++||+++|++.+.+|.++|+.+++++|+.+++.
T Consensus 111 ~~~l~~~~~~~~----r~G~~~v~i~RfiP~~R~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~Gy~~g~~ 181 (219)
T PRK10847 111 RSYLDKTHQFYE----KHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGTL 181 (219)
T ss_pred HHHHHHHHHHHH----HcCCEEEEeeCCccchHhHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 223455555555 47889999999999766889999999999999999999999999999999999988765
No 5
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.50 E-value=8.9e-14 Score=127.55 Aligned_cols=133 Identities=23% Similarity=0.359 Sum_probs=109.5
Q ss_pred hccCcCChH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHhhhchHHHHHHHHHhcCCcchhhHH
Q 022614 112 FPTLLLPSS-PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAAILRAAGEGNWFHQFRT 189 (294)
Q Consensus 112 ~P~~~iP~~-~l~~~aG~lfG~~~G~l~~~iG~~lG~~i~f~igR~~g~~-i~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 189 (294)
...+.+|++ .+.+.+|++||++.|++.+..++++|++++|.+++.++|+ +.++.+.+.++-+.+-..++ .+-+..
T Consensus 107 ~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~~~~~~---~~~~~~ 183 (275)
T KOG3140|consen 107 LQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQDVELNR---NSLLNY 183 (275)
T ss_pred HHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhcc---cchhhh
Confidence 344457964 4799999999999999999999999999999999999998 67666654333222221222 234677
Q ss_pred HHHHhcccc-chhhHHHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcc
Q 022614 190 VALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTGILIRTLADASH 247 (294)
Q Consensus 190 v~l~Rl~P~-P~~l~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l~~~~~ 247 (294)
+.+.|++|+ |.++.|+++++.++++..|++++++|.+|..++.+-.|+..+++.+.++
T Consensus 184 ~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~~ 242 (275)
T KOG3140|consen 184 MLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSASD 242 (275)
T ss_pred hhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhccccc
Confidence 999999996 9999999999999999999999999999999999999999888876544
No 6
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.39 E-value=1e-11 Score=105.77 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=111.2
Q ss_pred HHHHHHHHccchhHHHHHHHHHHHhhhccCcCChHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Q 022614 86 IPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMT-FGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQG- 163 (294)
Q Consensus 86 ~~l~~wi~~~~~~pvl~ill~~~~~~~P~~~iP~~~l~~~aG~l-fG~~~G~l~~~iG~~lG~~i~f~igR~~g~~i~~- 163 (294)
+...++..+..+++.+|+..|.+..++| +|++++....-.. ..++.-.+++.+|+++|++++|++||+..+.+.+
T Consensus 7 ~~~~~~~~~~~a~~~Lf~vaF~eat~lP---~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~ 83 (161)
T COG1238 7 DWTLSLMSQAYAYAGLFIVAFLEATLLP---VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARR 83 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH
Confidence 3344555455678889999998888888 4888753332222 6678889999999999999999999999987443
Q ss_pred Hhh-hchHHHHHHH-HHhcCCcchhhHHHHHHhccccchhhHHHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHHHHH
Q 022614 164 WLE-KYPKKAAILR-AAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTGILI 239 (294)
Q Consensus 164 ~l~-~~~~~~~~~~-~~~~~~~~~g~~~v~l~Rl~P~P~~l~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G~~~ 239 (294)
+.. ++++.++..+ ..+ |.|.+.+++.-+.|+| ++++.++|..++++++|++..++|..+..++.+++....
T Consensus 84 ~~~~~~~~~~~~~~~~~~----ryg~~~ll~s~lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~ 156 (161)
T COG1238 84 WFPGSEEALEKLQEKWYR----RYGVWTLLLSWLPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLG 156 (161)
T ss_pred hhcchHHHHHHHHHHHHH----HHHHHHHHHHhccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 332 2233333322 222 5799999999999999 999999999999999999999999999988887776544
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=95.40 E-value=0.19 Score=40.89 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=61.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHhhhc-hHHHHHHHHHhcCCcchhhHHHHHHhccccc---
Q 022614 130 FGYGFGFLLIMSAVAVGISLPYFIGSHFLHRI------QGWLEKY-PKKAAILRAAGEGNWFHQFRTVALIRISPFP--- 199 (294)
Q Consensus 130 fG~~~G~l~~~iG~~lG~~i~f~igR~~g~~i------~~~l~~~-~~~~~~~~~~~~~~~~~g~~~v~l~Rl~P~P--- 199 (294)
+.++..++++++|+++...+.++.-++.-+.. .+..++- ++.++-.+.++ |+|+..+++.=.+|+|
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~----kyg~~GL~lFVaIPlP~TG 89 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIE----KYGFWGLALFVAIPLPGTG 89 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhCCCCcch
Confidence 34678888999999888877776666654421 1111110 00111112222 5688888777778887
Q ss_pred hhhHHHHHhhcCCCchhHHHHHHHhHHHHH
Q 022614 200 YIIYNYCAVATHVKYGPYFLGSLVGMVPEI 229 (294)
Q Consensus 200 ~~l~ny~aG~t~v~~~~fll~t~iG~~P~~ 229 (294)
-+.-+.++-+.+++.++=+.+..+|.+...
T Consensus 90 ~wtgal~a~llg~~~~~~~~ai~~Gv~ia~ 119 (121)
T PF06695_consen 90 AWTGALIASLLGMDKKKAFLAIFLGVLIAG 119 (121)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 456788888999999999999888866543
No 8
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=90.08 E-value=4.8 Score=34.44 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022614 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP 150 (294)
Q Consensus 118 P~~~l~~~aG~lfG~~~G~l~~~iG~~lG~~i~ 150 (294)
++...++.+|++||||+|.+.+.+++.++..+.
T Consensus 33 ~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 33 VQHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hhHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 356678999999999999999999988887764
No 9
>PRK01844 hypothetical protein; Provisional
Probab=88.69 E-value=1.2 Score=32.98 Aligned_cols=35 Identities=29% Similarity=0.645 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhchH
Q 022614 133 GFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPK 170 (294)
Q Consensus 133 ~~G~l~~~iG~~lG~~i~f~igR~~g~~i~~~l~~~~~ 170 (294)
|...++.+++.++|..++|+++|+.-+ ++++++|.
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~---k~lk~NPp 38 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMM---NYLQKNPP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCC
Confidence 555677788999999999999998655 35555543
No 10
>PF14143 YrhC: YrhC-like protein
Probab=86.43 E-value=5.8 Score=29.39 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022614 229 IFVTIYTGILIRTLADASHEHHFLSAPQIILNVIGFAASVAATIFFTVYAKRQLKILQGEG 289 (294)
Q Consensus 229 ~~i~~~~G~~~~~l~~~~~~~~~~~~~~~~~~iig~vi~v~~~~~i~~~~kr~l~~~~~e~ 289 (294)
...+.|+|..+..- ..++.+--+..++.++.+...+++.+..++-.+++.|+|
T Consensus 20 vs~FlYiG~viP~~--------~~~~~~~~~m~~~~~~~l~~a~~f~~rs~~~~~~L~E~e 72 (72)
T PF14143_consen 20 VSTFLYIGTVIPIG--------AKETAQKYIMMGAICIFLAGAFLFFRRSKKYQKKLEEEE 72 (72)
T ss_pred HHHHHHHHhhCCcc--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 44567788766421 122344445566777777788888888888888887765
No 11
>PRK00523 hypothetical protein; Provisional
Probab=84.82 E-value=2.5 Score=31.23 Aligned_cols=34 Identities=18% Similarity=0.397 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhchH
Q 022614 134 FGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPK 170 (294)
Q Consensus 134 ~G~l~~~iG~~lG~~i~f~igR~~g~~i~~~l~~~~~ 170 (294)
...++.+++.++|...+|+++|+.-++ +++++|.
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k---~l~~NPp 39 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKK---QIRENPP 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCcC
Confidence 345566778899999999999986553 4445543
No 12
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=84.17 E-value=27 Score=34.70 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 022614 120 SPSMWVAGMTFGYGFGFLLIMSAVAVG 146 (294)
Q Consensus 120 ~~l~~~aG~lfG~~~G~l~~~iG~~lG 146 (294)
.+...++|++|||++|.+...++-++|
T Consensus 99 fIpi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 99 LILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345788999999999999999999888
No 13
>PRK09609 hypothetical protein; Provisional
Probab=83.22 E-value=42 Score=31.78 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=12.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 022614 217 YFLGSLVGMVPEIFVTIYTGILI 239 (294)
Q Consensus 217 fll~t~iG~~P~~~i~~~~G~~~ 239 (294)
++.++.+..+.-.+++...|...
T Consensus 171 ~i~a~ii~~~i~l~i~~~~~~~~ 193 (312)
T PRK09609 171 WIAALIILVIIILFIYFVVGFLD 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555555555555555555543
No 14
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=81.57 E-value=46 Score=31.08 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhchHHHHHHHHHhcCCcchhhHHHHHHhcccc-chhhHHHHHhhcCCCc
Q 022614 136 FLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPF-PYIIYNYCAVATHVKY 214 (294)
Q Consensus 136 ~l~~~iG~~lG~~i~f~igR~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~P~-P~~l~ny~aG~t~v~~ 214 (294)
..+..+|..+++.+-.++.|. +++|++++ ++++.-+...+++-++|+ ++..++.+.++.+-+-
T Consensus 18 ~p~ll~g~~l~~~i~~~v~~~---~~~~~l~~-------------~~~~~~~~a~~~G~~~p~C~c~~~P~~~~l~~~Ga 81 (307)
T PF03773_consen 18 LPFLLLGFLLSGLIQVFVPRE---KVARWLGR-------------SGFKGILLASLLGALLPVCSCGAVPVARGLLRKGA 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHCCHH---HHHHHcCC-------------CcchHHHHHHHHHhccCCCcccHHHHHHHHHHCCC
Confidence 344445556666555544332 13344443 222334567778888997 9999999998887666
Q ss_pred hhHHHHHHHhHHHHH----HHH--HHHHHHHHHhhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 215 GPYFLGSLVGMVPEI----FVT--IYTGILIRTLADASHEHHFLSAPQIILNVIGFAASVAATIFFTVYAKRQ 281 (294)
Q Consensus 215 ~~fll~t~iG~~P~~----~i~--~~~G~~~~~l~~~~~~~~~~~~~~~~~~iig~vi~v~~~~~i~~~~kr~ 281 (294)
..-..-+++-..|.. +++ ..+|- .......+.++++++++++.+.++.+++
T Consensus 82 ~~~~~~aFl~a~p~~n~~~~~~~~~~lg~----------------~~~~~r~~~~~~~~~~~g~l~~~~~~~~ 138 (307)
T PF03773_consen 82 PLGAAMAFLLASPLLNPIVLLLTWAALGW----------------KFTLIRIVLGLILAILVGLLFSRLFKRR 138 (307)
T ss_pred CcchhHHHHHhhHHhhHHHHHHHHHHhCc----------------HHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 555444444433433 222 22331 1345556778888888899888888877
No 15
>PRK13661 hypothetical protein; Provisional
Probab=80.70 E-value=38 Score=29.54 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022614 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP 150 (294)
Q Consensus 118 P~~~l~~~aG~lfG~~~G~l~~~iG~~lG~~i~ 150 (294)
|+......+|++|||..|++...+|..+++.+.
T Consensus 39 ~~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll~ 71 (182)
T PRK13661 39 LAYAFLALFAVLFGPVVGFLVGFIGHALKDFIA 71 (182)
T ss_pred eHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHc
Confidence 566778889999999999999999999998873
No 16
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=78.43 E-value=3.3 Score=29.94 Aligned_cols=29 Identities=31% Similarity=0.679 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhch
Q 022614 138 LIMSAVAVGISLPYFIGSHFLHRIQGWLEKYP 169 (294)
Q Consensus 138 ~~~iG~~lG~~i~f~igR~~g~~i~~~l~~~~ 169 (294)
+.+++.++|.+++|+++|+..++ .++++|
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k---~l~~NP 30 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEK---QLKENP 30 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHCC
Confidence 45677888999999999987653 444554
No 17
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.01 E-value=6.2 Score=29.00 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhchH
Q 022614 133 GFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPK 170 (294)
Q Consensus 133 ~~G~l~~~iG~~lG~~i~f~igR~~g~~i~~~l~~~~~ 170 (294)
|.+.+...++...|...+|+++|+.-. +.++++|.
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~~---k~lk~NPp 38 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQMK---KQLKDNPP 38 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhCCC
Confidence 455566667777788888999987544 45556654
No 18
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=76.42 E-value=4 Score=34.45 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022614 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP 150 (294)
Q Consensus 117 iP~~~l~~~aG~lfG~~~G~l~~~iG~~lG~~i~ 150 (294)
=|+......+|++|||..|++...+|..+++.+.
T Consensus 36 ~~~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 36 HLGSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred ehhhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 3567778999999999999999999999998854
No 19
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=74.48 E-value=7.8 Score=32.59 Aligned_cols=38 Identities=13% Similarity=0.472 Sum_probs=26.9
Q ss_pred HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022614 124 WVAGMTFGYG-FGFLLIMSAVAVGISLPYFIGSHFLHRI 161 (294)
Q Consensus 124 ~~aG~lfG~~-~G~l~~~iG~~lG~~i~f~igR~~g~~i 161 (294)
+++.++++.. ..=.++++++.+|..++|++.|++.|++
T Consensus 90 ~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl 128 (150)
T COG3086 90 FLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKL 128 (150)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444432 2346788899999999999999887743
No 20
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=73.75 E-value=1e+02 Score=30.96 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=13.7
Q ss_pred hHHHHHHHhHHHHHHHHHHHHH
Q 022614 216 PYFLGSLVGMVPEIFVTIYTGI 237 (294)
Q Consensus 216 ~fll~t~iG~~P~~~i~~~~G~ 237 (294)
+++.++.+|....-.+....|-
T Consensus 400 ~~i~a~~iG~avgGa~~~~~gv 421 (482)
T PRK11404 400 PMITANTLAGGITGVLVIAFGI 421 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 7777767776665555555554
No 21
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=72.34 E-value=65 Score=28.42 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=52.7
Q ss_pred HHHHHHhccccchhhH-HHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccCCChhHHHHHHHHHHH
Q 022614 188 RTVALIRISPFPYIIY-NYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTGILIRTLADASHEHHFLSAPQIILNVIGFAA 266 (294)
Q Consensus 188 ~~v~l~Rl~P~P~~l~-ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l~~~~~~~~~~~~~~~~~~iig~vi 266 (294)
..+.++.++|-|-... ....|.-.-.+.--+++.+...+|..++...+-.....+.+.. ..+-....+-.++
T Consensus 50 ~~laisq~lPGP~a~~la~~vGy~~~G~~Ga~ia~lafvLPs~i~~~~l~~~~~~~~~~~-------~v~~~~~glk~~i 122 (195)
T COG2059 50 DALAISQLLPGPIATQLAIYVGYKLAGILGALIAGLAFVLPSILIMLGLALLLKRFGDLP-------LVKGILKGLKPAI 122 (195)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch-------HHHHHHHHHHHHH
Confidence 4678899999876432 2333555555566666666678888888777766666554321 1222333334444
Q ss_pred HHHHHHHHHHHHHHHH
Q 022614 267 SVAATIFFTVYAKRQL 282 (294)
Q Consensus 267 ~v~~~~~i~~~~kr~l 282 (294)
..++....+++.|+..
T Consensus 123 i~lv~~~~~~l~~~~~ 138 (195)
T COG2059 123 IALVLQAVWRLGKKAL 138 (195)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555555677777665
No 22
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=71.60 E-value=12 Score=30.65 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=28.9
Q ss_pred HHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022614 123 MWVAGMTFGYGFG--FLLIMSAVAVGISLPYFIGSHFLHRI 161 (294)
Q Consensus 123 ~~~aG~lfG~~~G--~l~~~iG~~lG~~i~f~igR~~g~~i 161 (294)
.+.+|+..|...+ -..+.+++.+|..++|++.|++.++.
T Consensus 81 ~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~ 121 (135)
T PF04246_consen 81 ALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRL 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555666555444 57788899999999999999887753
No 23
>PRK11677 hypothetical protein; Provisional
Probab=69.55 E-value=10 Score=31.53 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 022614 136 FLLIMSAVAVGISLPYFIGSHFL 158 (294)
Q Consensus 136 ~l~~~iG~~lG~~i~f~igR~~g 158 (294)
++++++|.++|.+++|+++|+..
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 56778999999999999999864
No 24
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=69.52 E-value=66 Score=27.24 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=34.9
Q ss_pred HHHHHHhccccchhh-HHHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 022614 188 RTVALIRISPFPYII-YNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTGILIRTLA 243 (294)
Q Consensus 188 ~~v~l~Rl~P~P~~l-~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l~ 243 (294)
..+.+.+.+|-|... .....|...-.+.-=+.+++--.+|..++...++....+..
T Consensus 45 ~~~al~q~~PGP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~~~~ 101 (169)
T PF02417_consen 45 EGLALAQALPGPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLYSRFR 101 (169)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457789999998876 55555655444444444443335677776666666666544
No 25
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=66.61 E-value=9.4 Score=31.20 Aligned_cols=35 Identities=34% Similarity=0.515 Sum_probs=19.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 250 HFLSAPQIILNVIGFAASVAATIFFTVYAKRQLKI 284 (294)
Q Consensus 250 ~~~~~~~~~~~iig~vi~v~~~~~i~~~~kr~l~~ 284 (294)
|.++...+...++|++++++..+++..|.-||++|
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred cCccccceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677777777777666555544444444333
No 26
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.61 E-value=15 Score=25.98 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022614 263 GFAASVAATIFFTVYAKRQLKIL 285 (294)
Q Consensus 263 g~vi~v~~~~~i~~~~kr~l~~~ 285 (294)
|++++.+..+.-....|++.+++
T Consensus 31 G~llg~l~~~~~~~~~r~~~~~~ 53 (68)
T PF06305_consen 31 GALLGWLLSLPSRLRLRRRIRRL 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 27
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=62.91 E-value=1.6e+02 Score=29.04 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=22.6
Q ss_pred HHHHHhhcCCCchhHHHHHHHhHHHHHHHHHH
Q 022614 203 YNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234 (294)
Q Consensus 203 ~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~ 234 (294)
.-|+.|..+.+..+|..++..|.+...+...+
T Consensus 147 ~i~~~~~lRa~~p~~~~~~I~~~I~~~i~~t~ 178 (459)
T PF10337_consen 147 FIYFHGWLRAKNPKLNFPVIFGSIFVDIFLTY 178 (459)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHh
Confidence 45777888888888888888876655444443
No 28
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=59.96 E-value=25 Score=30.89 Aligned_cols=55 Identities=24% Similarity=0.435 Sum_probs=27.6
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 216 PYFLGSLVGMVPEIFVTIYTGILIRTLADASHEHHFLSAPQIILNVIGFAASVAATIFFTVYAKRQLK 283 (294)
Q Consensus 216 ~fll~t~iG~~P~~~i~~~~G~~~~~l~~~~~~~~~~~~~~~~~~iig~vi~v~~~~~i~~~~kr~l~ 283 (294)
++++.+++.++.|.++++...- +....++ .+ ..|+..++|+ +.+.+.+|.||+.+
T Consensus 148 k~~~~~~~~~~~w~~~~~~~~~-lp~~inp-----~l--~~~~~iiig~-----i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 148 KYILISVLAMVLWIVIFVLTSF-LPPVINP-----VL--PPWVYIIIGV-----IAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-ccccCCc-----CC--CHHHHHHHHH-----HHHHHHHHHHHHhC
Confidence 3445555666777776665443 2222211 12 2454444443 33445677777754
No 29
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=59.85 E-value=44 Score=30.20 Aligned_cols=19 Identities=21% Similarity=0.189 Sum_probs=11.5
Q ss_pred chhHHHHHHHhHHHHHHHH
Q 022614 214 YGPYFLGSLVGMVPEIFVT 232 (294)
Q Consensus 214 ~~~fll~t~iG~~P~~~i~ 232 (294)
+++|+.-.++|.+.+.++-
T Consensus 8 ~~~~~~~illg~~iGg~~G 26 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIG 26 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667666666665555543
No 30
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=58.25 E-value=15 Score=30.04 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 022614 138 LIMSAVAVGISLPYFIGSHFLH 159 (294)
Q Consensus 138 ~~~iG~~lG~~i~f~igR~~g~ 159 (294)
|+++|.++|.+++|+++|...+
T Consensus 1 y~~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHhcc
Confidence 4678899999999999999754
No 31
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=56.23 E-value=33 Score=30.22 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 022614 132 YGFGFLLIMSAVAVGISLPYFIGSHFLH 159 (294)
Q Consensus 132 ~~~G~l~~~iG~~lG~~i~f~igR~~g~ 159 (294)
+..|.+...+-++.|....|..-|++-+
T Consensus 123 ~~~GlItlll~a~vgGfamy~my~y~yr 150 (226)
T COG4858 123 QVYGLITLLLTAVVGGFAMYIMYYYAYR 150 (226)
T ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4667777777777787777766665433
No 32
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=55.70 E-value=11 Score=31.65 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 022614 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISL 149 (294)
Q Consensus 118 P~~~l~~~aG~lfG~~~G~l~~~iG~~lG~~i 149 (294)
|+.+..+.+|+++||+.|.+...+...++..+
T Consensus 30 ~~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 30 FSFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555788899999999988877766666555
No 33
>COG3162 Predicted membrane protein [Function unknown]
Probab=54.24 E-value=78 Score=24.94 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022614 255 PQIILNVIGFAASVAATIFFTVYAKRQLKILQGE 288 (294)
Q Consensus 255 ~~~~~~iig~vi~v~~~~~i~~~~kr~l~~~~~e 288 (294)
..+.+.++-++.+.+++....+.+....++++.|
T Consensus 62 ~Gip~gvg~fv~tfVlt~IYv~rAn~~fDrl~~~ 95 (102)
T COG3162 62 RGIPFGVGVFVMTFVLTGIYVRRANGEFDRLNAE 95 (102)
T ss_pred hhHhHHHHHHHHHHHHHHHHhhHhhccchHHHHH
Confidence 3455555555666666666666666555555544
No 34
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=53.30 E-value=57 Score=26.64 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022614 257 IILNVIGFAASVAATIFFTVYAKRQLKILQGE 288 (294)
Q Consensus 257 ~~~~iig~vi~v~~~~~i~~~~kr~l~~~~~e 288 (294)
+.--+.|+++++... .++.+.+++.++...+
T Consensus 103 l~tT~~GL~vai~~~-~~~~~l~~~~~~~~~~ 133 (139)
T PF01618_consen 103 LITTAYGLVVAIPAL-PFYNYLKRRVERIIHR 133 (139)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 334455666665555 4556666666554443
No 35
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=50.22 E-value=2.3e+02 Score=27.33 Aligned_cols=55 Identities=15% Similarity=0.002 Sum_probs=35.0
Q ss_pred HHHHHHhccccchhh-HHHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 022614 188 RTVALIRISPFPYII-YNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTGILIRTL 242 (294)
Q Consensus 188 ~~v~l~Rl~P~P~~l-~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l 242 (294)
-.+.+.+.+|-|... ++...|.-.-.+.-=+.+++--.+|..++...++....+.
T Consensus 37 ~~~alaq~~PGP~~~n~a~~iG~~~~G~~Gal~a~~~~~lP~~ili~~l~~~~~~~ 92 (368)
T TIGR00937 37 DLVALAQFLPGPASSQVAIYLGYLLGGIVGAILAGLAFTLPSFLLVVALAWAYVHY 92 (368)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357789999988765 3445565554555555555444577777666666666555
No 36
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=49.91 E-value=2.4e+02 Score=26.98 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 022614 142 AVAVGISLPYFIGSHFLHRIQGW 164 (294)
Q Consensus 142 G~~lG~~i~f~igR~~g~~i~~~ 164 (294)
.+.+|+.+.|.++-++++.+.++
T Consensus 43 ~~ligai~~~li~~~~~~~~~~~ 65 (356)
T COG4956 43 DALIGAIIFFLISFWFGKYVLNW 65 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555443333
No 37
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=48.39 E-value=14 Score=27.62 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 258 ILNVIGFAASVAATIFFTVYAKRQ 281 (294)
Q Consensus 258 ~~~iig~vi~v~~~~~i~~~~kr~ 281 (294)
...++.+++.++..|.+.+|.+|+
T Consensus 7 ~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 7 AIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455566677778788887553
No 38
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=46.79 E-value=2.9e+02 Score=27.00 Aligned_cols=36 Identities=6% Similarity=0.020 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH
Q 022614 54 YWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWE 92 (294)
Q Consensus 54 ~~~kl~~~~~~l~~l~~~~~~~~~p~~~~~~l~~l~~wi 92 (294)
++++.++.+++++.++...+.. ++ .+.-.+.+..|+
T Consensus 240 k~~~~~i~~~i~~~~~~~~~~~-~~--~~~~~~~~~~W~ 275 (380)
T TIGR00261 240 KVLSYLIAISIILLFVMISFYL-NG--FEFLYKNLKLWI 275 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-Cc--HHHHHHHHHHHH
Confidence 5555556666666555221221 22 233567778886
No 39
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=46.27 E-value=33 Score=28.99 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 022614 136 FLLIMSAVAVGISLPYFIGSHFLHR 160 (294)
Q Consensus 136 ~l~~~iG~~lG~~i~f~igR~~g~~ 160 (294)
=..+++++++|..++|++.|++.++
T Consensus 103 e~~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 103 DLAALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466778888888999998877664
No 40
>PRK01844 hypothetical protein; Provisional
Probab=44.56 E-value=37 Score=25.12 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 022614 257 IILNVIGFAASVAATIFFTV-YAKRQLKIL 285 (294)
Q Consensus 257 ~~~~iig~vi~v~~~~~i~~-~~kr~l~~~ 285 (294)
+.+.++++++++++++++.| +.+|.+++-
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~lk~N 36 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYLQKN 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34455666677777777655 566666654
No 41
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.28 E-value=93 Score=25.17 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=17.7
Q ss_pred HHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 022614 127 GMTFG--YGFGFLLIMSAVAVGISLPYFIGSHFL 158 (294)
Q Consensus 127 G~lfG--~~~G~l~~~iG~~lG~~i~f~igR~~g 158 (294)
|+++| |..|++....-..++|-+.|.-.-.+.
T Consensus 57 GviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~ 90 (129)
T KOG3415|consen 57 GVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFL 90 (129)
T ss_pred HHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45555 245665555555666777775444433
No 42
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=44.08 E-value=2e+02 Score=24.30 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=19.2
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 022614 215 GPYFLGSLVGMVPEIFVTIYTGILIRTLA 243 (294)
Q Consensus 215 ~~fll~t~iG~~P~~~i~~~~G~~~~~l~ 243 (294)
..|..+..++...|...+.+.+...++..
T Consensus 136 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 164 (191)
T PF01810_consen 136 LVFILGIFLGSLLWFLLLALLGSRLRRKF 164 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777665543
No 43
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=43.84 E-value=1.7e+02 Score=25.89 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Q 022614 135 GFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY 168 (294)
Q Consensus 135 G~l~~~iG~~lG~~i~f~igR~~g~~i~~~l~~~ 168 (294)
+.+-.++...+.-.++.++.|+.++.+.+++.+.
T Consensus 93 ~~lp~~l~~~~al~~sl~~~~~~~~~la~ilp~~ 126 (202)
T PF07290_consen 93 GPLPAWLAAPVALFLSLFFTRYLGRPLARILPKD 126 (202)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 4455556666777788899999999888888764
No 44
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=43.49 E-value=49 Score=21.86 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022614 261 VIGFAASVAATIFFTVYAKRQLKILQ 286 (294)
Q Consensus 261 iig~vi~v~~~~~i~~~~kr~l~~~~ 286 (294)
.+.++.++.+..++.++..|+.++.+
T Consensus 16 l~vI~~~igm~~~~~~~F~~k~~~~~ 41 (42)
T PF11346_consen 16 LIVIVFTIGMGVFFIRYFIRKMKEDE 41 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 44556677777888888888776643
No 45
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=43.13 E-value=68 Score=21.27 Aligned_cols=7 Identities=43% Similarity=0.710 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 022614 280 RQLKILQ 286 (294)
Q Consensus 280 r~l~~~~ 286 (294)
+++++.+
T Consensus 34 ~~l~~~~ 40 (46)
T PF04995_consen 34 KELKRLE 40 (46)
T ss_pred HHHHHHH
Confidence 3344333
No 46
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=42.66 E-value=60 Score=30.07 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=21.8
Q ss_pred CCchhHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 022614 212 VKYGPYFLGSLVGMVPEIFVTIYTGILIRTLAD 244 (294)
Q Consensus 212 v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l~~ 244 (294)
-..+.+.+.|++ .+|.+++-.+.|.....+..
T Consensus 256 ~~mk~LTvvt~I-flP~t~IaGiyGMNf~~mP~ 287 (318)
T TIGR00383 256 EIMKILTVVSTI-FIPLTFIAGIYGMNFKFMPE 287 (318)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCcccCcc
Confidence 344566667767 57888888888887655443
No 47
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=42.42 E-value=1.5e+02 Score=22.52 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022614 257 IILNVIGFAASVAATIFFTVYAKRQLKILQGE 288 (294)
Q Consensus 257 ~~~~iig~vi~v~~~~~i~~~~kr~l~~~~~e 288 (294)
+.+.+.-++.+.+++++..++++|+.+++.++
T Consensus 56 ~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~ 87 (91)
T PF04341_consen 56 IVLGLGQIVFAWVLTWLYVRRANREFDPLARA 87 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence 44444444455666666666666655555443
No 48
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=42.19 E-value=42 Score=28.39 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=7.3
Q ss_pred HHHHHHHHHhHHHH
Q 022614 122 SMWVAGMTFGYGFG 135 (294)
Q Consensus 122 l~~~aG~lfG~~~G 135 (294)
+.+.+|.+.|||++
T Consensus 34 iNviaaVlLGP~ya 47 (150)
T PF09512_consen 34 INVIAAVLLGPWYA 47 (150)
T ss_pred HHHHHHHHhchHHH
Confidence 45555555555544
No 49
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=42.15 E-value=94 Score=20.57 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022614 263 GFAASVAATIFFTVYAKRQLKILQGEGE 290 (294)
Q Consensus 263 g~vi~v~~~~~i~~~~kr~l~~~~~e~~ 290 (294)
++++.+...+...+..|+..++++++++
T Consensus 14 t~~~l~~l~~~~~~~~r~~~~~l~~~~~ 41 (46)
T PF04995_consen 14 TALVLAGLIVWSLRRRRRLRKELKRLEA 41 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555556666776654
No 50
>COG1422 Predicted membrane protein [Function unknown]
Probab=40.31 E-value=2.1e+02 Score=25.37 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 022614 254 APQIILNVIGFAASVAATIF 273 (294)
Q Consensus 254 ~~~~~~~iig~vi~v~~~~~ 273 (294)
+..+++++.+++.++...+.
T Consensus 45 ~p~lvilV~avi~gl~~~i~ 64 (201)
T COG1422 45 PPHLVILVAAVITGLYITIL 64 (201)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 35777777777666555554
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.98 E-value=54 Score=26.77 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=13.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 126 AGMTFGYGFGFLLIMSAVAVGISLPYFIGSH 156 (294)
Q Consensus 126 aG~lfG~~~G~l~~~iG~~lG~~i~f~igR~ 156 (294)
+|++||.+.|.+..+ .++.|++.|+
T Consensus 67 ~~Ii~gv~aGvIg~I------lli~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII------LLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred eehhHHHHHHHHHHH------HHHHHHHHHH
Confidence 455555555543322 2677777664
No 52
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=39.35 E-value=90 Score=20.62 Aligned_cols=8 Identities=38% Similarity=0.484 Sum_probs=3.3
Q ss_pred HHHHHHhh
Q 022614 280 RQLKILQG 287 (294)
Q Consensus 280 r~l~~~~~ 287 (294)
+..+++++
T Consensus 32 ~~~~~l~~ 39 (45)
T TIGR03141 32 RLLRELRR 39 (45)
T ss_pred HHHHHHHH
Confidence 33444443
No 53
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=38.50 E-value=2.5e+02 Score=23.83 Aligned_cols=40 Identities=10% Similarity=0.254 Sum_probs=28.2
Q ss_pred hhHHHHHHhccc-cchh--hHHHHHhhcCCCchhHHHHHHHhH
Q 022614 186 QFRTVALIRISP-FPYI--IYNYCAVATHVKYGPYFLGSLVGM 225 (294)
Q Consensus 186 g~~~v~l~Rl~P-~P~~--l~ny~aG~t~v~~~~fll~t~iG~ 225 (294)
|+..=++.-++| ++.+ +.-+.+...+.+...++++|+++.
T Consensus 22 g~a~Gvf~g~~P~~glh~~~~~~la~~lr~N~~~a~l~t~v~n 64 (154)
T TIGR03546 22 AVALGMILGLTPFLNLHNIALLFLVLILRVNLGAFILSAILFS 64 (154)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 344444566778 3443 445667888999999999999986
No 54
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.37 E-value=80 Score=26.12 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 022614 135 GFLLIMSAVAVGISLPYFIGSHFLHR 160 (294)
Q Consensus 135 G~l~~~iG~~lG~~i~f~igR~~g~~ 160 (294)
.+.++.+|-++|-+++|+|.|..-+.
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 45778899999999999999987554
No 55
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=38.24 E-value=4.7e+02 Score=26.97 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022614 257 IILNVIGFAASVAATIFFTVYAKRQLKILQGE 288 (294)
Q Consensus 257 ~~~~iig~vi~v~~~~~i~~~~kr~l~~~~~e 288 (294)
+...+++++++.+++..+....||...++-.|
T Consensus 530 ~~~~iiai~ig~vvt~~~~~~~k~~~~~~~~~ 561 (563)
T PRK10712 530 VLGYLVAIIAGTLVAGLAYAFLKRPETDAVAK 561 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhhhhcc
Confidence 45567788888888888888888876665443
No 56
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=38.17 E-value=4.3e+02 Score=26.53 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=12.6
Q ss_pred Hhccc-cchhhHHHHHhhcCCC
Q 022614 193 IRISP-FPYIIYNYCAVATHVK 213 (294)
Q Consensus 193 ~Rl~P-~P~~l~ny~aG~t~v~ 213 (294)
.|++| .-.++-|..++.+++|
T Consensus 105 ~rlla~L~~Dvr~ISf~~s~lp 126 (546)
T COG4615 105 ARLLAGLTSDVRNISFAFSRLP 126 (546)
T ss_pred cchhhhhcccccceeehHhhhH
Confidence 45566 4667777766555544
No 57
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=37.93 E-value=2.3e+02 Score=23.42 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022614 258 ILNVIGFAASVAATIFFTVYAKRQLKILQGE 288 (294)
Q Consensus 258 ~~~iig~vi~v~~~~~i~~~~kr~l~~~~~e 288 (294)
...+.++++.-+..+.-..+.||..+++.++
T Consensus 75 ~~~l~~~vi~~v~~Iisa~f~kks~~~l~~~ 105 (139)
T PF06195_consen 75 ASFLAGLVILWVLFIISAYFLKKSYDLLAEY 105 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555567777777776554
No 58
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=37.04 E-value=61 Score=23.44 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH
Q 022614 261 VIGFAASVAATIFFTV-YAKRQLKI 284 (294)
Q Consensus 261 iig~vi~v~~~~~i~~-~~kr~l~~ 284 (294)
++++++++++++++.| +.+|.+++
T Consensus 4 ilali~G~~~Gff~ar~~~~k~l~~ 28 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYMEKQLKE 28 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655 66666654
No 59
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=36.23 E-value=1.3e+02 Score=26.20 Aligned_cols=81 Identities=12% Similarity=0.214 Sum_probs=39.2
Q ss_pred chhhHHHHHhhcCCCchhHHHHHHHhHHHHHHHH-HHHHHHHHHhhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 022614 199 PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVT-IYTGILIRTLADASHEHHFLSAPQIILNVIGFAASVAATIFFTVY 277 (294)
Q Consensus 199 P~~l~ny~aG~t~v~~~~fll~t~iG~~P~~~i~-~~~G~~~~~l~~~~~~~~~~~~~~~~~~iig~vi~v~~~~~i~~~ 277 (294)
|-.+...+...-++.+..|.+=..+|.++..++. ..++.. ...+. ++....+ ....+.+.|+++.....++..||
T Consensus 4 ~~~~~~~a~~lr~~Gwi~FW~QlvLgvVs~~iL~F~~~~~~--~~~~~-~~~~G~~-~gl~~a~~gl~~l~~si~~~fry 79 (183)
T PF12263_consen 4 PPALQRIARALRRLGWIGFWIQLVLGVVSAVILLFANLFSG--RATSP-NRNPGLG-IGLFLAICGLVALFFSIFWSFRY 79 (183)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cCCCC-CcCCCcc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555556666666766644433 232111 11111 1011122 34556666777776666666666
Q ss_pred HH--HHHH
Q 022614 278 AK--RQLK 283 (294)
Q Consensus 278 ~k--r~l~ 283 (294)
.| |+++
T Consensus 80 ~Rlar~L~ 87 (183)
T PF12263_consen 80 TRLARRLR 87 (183)
T ss_pred HHHHHHhc
Confidence 65 4444
No 60
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=35.94 E-value=62 Score=23.71 Aligned_cols=35 Identities=23% Similarity=0.099 Sum_probs=18.1
Q ss_pred ChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022614 253 SAPQII-LNVIGFAASVAATIFFTVYAKRQLKILQG 287 (294)
Q Consensus 253 ~~~~~~-~~iig~vi~v~~~~~i~~~~kr~l~~~~~ 287 (294)
++.||. +-+++-++..+++++...|.|++.++.++
T Consensus 29 sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 29 SPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred CcccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 345653 22223233345566677777766555444
No 61
>PRK00523 hypothetical protein; Provisional
Probab=35.20 E-value=64 Score=23.91 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 022614 258 ILNVIGFAASVAATIFFTV-YAKRQLKI 284 (294)
Q Consensus 258 ~~~iig~vi~v~~~~~i~~-~~kr~l~~ 284 (294)
.+.++++++.+++++++.| +.+|.+++
T Consensus 9 ~l~i~~li~G~~~Gffiark~~~k~l~~ 36 (72)
T PRK00523 9 GLGIPLLIVGGIIGYFVSKKMFKKQIRE 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666655 56666664
No 62
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=35.14 E-value=71 Score=32.21 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=12.2
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 022614 51 KVWYWVKLAFFLTSVGLLAAV 71 (294)
Q Consensus 51 ~~~~~~kl~~~~~~l~~l~~~ 71 (294)
++.|-+++.....++..++++
T Consensus 549 kl~Ra~~i~~~~~li~t~~~v 569 (667)
T KOG2348|consen 549 KLNRALRIGIFVSLIITFAFV 569 (667)
T ss_pred HHhhhhhHHHHHHHHHHHHHH
Confidence 555666666666665544444
No 63
>COG1238 Predicted membrane protein [Function unknown]
Probab=35.11 E-value=83 Score=26.90 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=42.8
Q ss_pred hccccchhhHHHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 022614 194 RISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTGILIRTLADA 245 (294)
Q Consensus 194 Rl~P~P~~l~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l~~~ 245 (294)
=+.|+|..+.=...-+.+.+.+.+...+.+|...+.++--++|+...+..+.
T Consensus 31 t~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 31 TLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 3568888877666677779999999999999999999988899988776654
No 64
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=35.06 E-value=86 Score=23.29 Aligned_cols=38 Identities=8% Similarity=-0.080 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 022614 256 QIILNVIGFAASVAATIFFTVYAKRQLKILQGEGESLL 293 (294)
Q Consensus 256 ~~~~~iig~vi~v~~~~~i~~~~kr~l~~~~~e~~~~~ 293 (294)
++.+...-++...++.+.-+|....-..+..+||+.++
T Consensus 37 ~mA~~laeliav~lVl~G~YRiLdawiarv~~eer~~~ 74 (80)
T TIGR02741 37 WMAFFLAELIAVILVLWGAYRVLDAWIARVSREERDAL 74 (80)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555566667777888777777777777665
No 65
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=35.02 E-value=48 Score=32.42 Aligned_cols=79 Identities=16% Similarity=0.274 Sum_probs=42.0
Q ss_pred CCCchhHHHHHHHhHHHHHHHH-HHHHHHHHHhhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022614 211 HVKYGPYFLGSLVGMVPEIFVT-IYTGILIRTLADASHEHHFLSAPQIILNVIGFAASVAATIFFTVYAKRQLKILQGEG 289 (294)
Q Consensus 211 ~v~~~~fll~t~iG~~P~~~i~-~~~G~~~~~l~~~~~~~~~~~~~~~~~~iig~vi~v~~~~~i~~~~kr~l~~~~~e~ 289 (294)
+.+.++|.+...++..-+..=. =+.|-..+..+..+-+..++-..-+...++|++..+++.+++.+.-|||+.+.+.++
T Consensus 132 rLgmn~~~l~~l~~ls~gvmN~~PWGGPt~Raas~Lg~d~~el~~pliP~~i~Gl~~vl~lA~~lG~kErkRlg~~~~~~ 211 (433)
T COG2851 132 RLGMNPYLLALLATLSAGVMNMLPWGGPTARAASVLGVDPAELFVPLIPIQIIGLVLVLALAWLLGKKERKRLGVIDLSE 211 (433)
T ss_pred HcCCcHHHHHHHHHHhhhheecCCCCCcHHHHHHHhCCCHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHhhhccCch
Confidence 5566677776655422111101 134444443332222111111122344567888888888999999998888765533
No 66
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=34.75 E-value=3.7e+02 Score=24.80 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=53.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhchHHHHHHHHHhcCCcchhhHHHHHHhccc-c--chhhH
Q 022614 127 GMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISP-F--PYIIY 203 (294)
Q Consensus 127 G~lfG~~~G~l~~~iG~~lG~~i~f~igR~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~P-~--P~~l~ 203 (294)
|-.+||..-+++..+-...-....|..|.+.|++.-..+ +....+++.+... -.-.+.++-+++ . -....
T Consensus 130 Gn~lGpil~~~~~~~~~~~~r~~~~~~GY~~G~~~i~~l-~~~~~~~i~~~as------ilGl~vvGal~as~V~v~~~l 202 (264)
T PF03613_consen 130 GNILGPILFLLLYNIIHFFIRYFGFFLGYKLGTSFITKL-QSGLLQKITEAAS------ILGLMVVGALIASYVNVSTPL 202 (264)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH------HHHHHHHHHHHHHeEEEeeeE
Confidence 334555544444444456666777788888888833334 3333444444332 233344555555 2 11222
Q ss_pred HHHHhhcCCCchhHHHHHHHhHHHHHHHH
Q 022614 204 NYCAVATHVKYGPYFLGSLVGMVPEIFVT 232 (294)
Q Consensus 204 ny~aG~t~v~~~~fll~t~iG~~P~~~i~ 232 (294)
.+..|-..++....+=.-+-|.+|-.+..
T Consensus 203 ~~~~g~~~~~lQ~~lD~I~P~lLpl~~~~ 231 (264)
T PF03613_consen 203 TITIGGVTISLQEILDGIMPGLLPLLLTL 231 (264)
T ss_pred EEecCCceeeHHHhHHhHHhhHHHHHHHH
Confidence 34445567777886666666777755543
No 67
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=34.71 E-value=3.5e+02 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.326 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH---HHHHhhhchH
Q 022614 139 IMSAVAVGISLPYFIGSHFLHR---IQGWLEKYPK 170 (294)
Q Consensus 139 ~~iG~~lG~~i~f~igR~~g~~---i~~~l~~~~~ 170 (294)
+++|+.+-.+++++++++.-+. ++.++.|.|-
T Consensus 44 ~ligai~~~li~~~~~~~~~~~~~~le~~i~k~~~ 78 (356)
T COG4956 44 ALIGAIIFFLISFWFGKYVLNWLKRLEEQIRKLPV 78 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 5678888889999999998653 6777766553
No 68
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=33.96 E-value=35 Score=25.44 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022614 261 VIGFAASVAATIFFTVYAKRQ 281 (294)
Q Consensus 261 iig~vi~v~~~~~i~~~~kr~ 281 (294)
++.+++.|+..|.+.+|.+|+
T Consensus 10 livf~ifVap~WL~lHY~sk~ 30 (75)
T PF06667_consen 10 LIVFMIFVAPIWLILHYRSKW 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334455666677777776654
No 69
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=33.67 E-value=56 Score=26.78 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 252 LSAPQIILNVIGFAASVAATIFFTVYAKR 280 (294)
Q Consensus 252 ~~~~~~~~~iig~vi~v~~~~~i~~~~kr 280 (294)
-+++++.++++++++.++..+++.+=++.
T Consensus 32 ~tpWNysiL~Ls~vvlvi~~~LLgrsi~A 60 (125)
T PF15048_consen 32 ATPWNYSILALSFVVLVISFFLLGRSIQA 60 (125)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhHh
Confidence 45688999999988888888888776653
No 70
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=33.63 E-value=59 Score=27.72 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=23.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Q 022614 123 MWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY 168 (294)
Q Consensus 123 ~~~aG~lfG~~~G~l~~~iG~~lG~~i~f~igR~~g~~i~~~l~~~ 168 (294)
+++.|.+|++.+|.++..+-+++ ++.+++.+++.+|+.+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~i~Fl--il~~lL~~~l~kpi~~~l~~R 50 (175)
T PRK14472 7 ILLSGGLLSPNPGLIFWTAVTFV--IVLLILKKIAWGPILSALEER 50 (175)
T ss_pred hhhcCCccCCCHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHH
Confidence 44556677876665433322222 344445555566676666543
No 71
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=32.79 E-value=33 Score=30.36 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 022614 135 GFLLIMSAVAVGISLPYFIGSHFLHR 160 (294)
Q Consensus 135 G~l~~~iG~~lG~~i~f~igR~~g~~ 160 (294)
-.+..++....|+..+|.+||++||.
T Consensus 131 ~~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 131 LALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34567778889999999999999986
No 72
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=32.76 E-value=88 Score=26.45 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 022614 275 TVYAKRQLKI 284 (294)
Q Consensus 275 ~~~~kr~l~~ 284 (294)
++..+|+.|.
T Consensus 50 ~lcssRKkKa 59 (189)
T PF05568_consen 50 YLCSSRKKKA 59 (189)
T ss_pred HHHhhhhHHH
Confidence 3333343333
No 73
>PRK11056 hypothetical protein; Provisional
Probab=32.72 E-value=45 Score=27.10 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022614 261 VIGFAASVAATIFFTVYAKRQL 282 (294)
Q Consensus 261 iig~vi~v~~~~~i~~~~kr~l 282 (294)
.+..++++++.+++.+..|.+.
T Consensus 94 F~p~il~~~L~~Wi~~kl~~~~ 115 (120)
T PRK11056 94 FFPAVLSVILVFWIGRKLRNRK 115 (120)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4455566666666666555433
No 74
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=32.16 E-value=86 Score=21.17 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022614 260 NVIGFAASVAATIFFTVYAKRQ 281 (294)
Q Consensus 260 ~iig~vi~v~~~~~i~~~~kr~ 281 (294)
.+.+.++.+.+.+..++|.||.
T Consensus 24 ~ig~avL~v~V~i~v~kwiRra 45 (46)
T PF10389_consen 24 TIGGAVLGVIVGIAVYKWIRRA 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3557778888888899999885
No 75
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=31.84 E-value=4.5e+02 Score=25.16 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022614 260 NVIGFAASVAATIFFTVYAKRQLKILQG 287 (294)
Q Consensus 260 ~iig~vi~v~~~~~i~~~~kr~l~~~~~ 287 (294)
..+.++++++.++++.|++|++-..--|
T Consensus 190 ~~lA~~~~I~~s~~~~r~ak~rQ~~TGq 217 (397)
T COG4597 190 FILALVMAIVASVFLARWAKTRQIATGQ 217 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3557778888999999999877655443
No 76
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=31.49 E-value=4.8e+02 Score=25.13 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=34.8
Q ss_pred HHhcCCc--chhh-HHHHHHhccccchhhHHHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 022614 177 AAGEGNW--FHQF-RTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTGILIRTLA 243 (294)
Q Consensus 177 ~~~~~~~--~~g~-~~v~l~Rl~P~P~~l~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l~ 243 (294)
.+++++| ++.| -.+.+.+.+|-|.....-..|..--.+.--+++++--.+|..++...+....+++.
T Consensus 232 ~V~~~~Wlt~~eF~~~~alaq~~PGP~~~~a~~iG~~~~G~~Ga~~A~~g~~lP~~lli~~l~~~~~~~~ 301 (368)
T TIGR00937 232 VVDRGNWLTAGQFLDGIALAQITPGPLFITATFIGYLVAGFPGAIAATVAIFLPSFLLVLGVLPYFKKLG 301 (368)
T ss_pred HHhccCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444455 2233 36778999998876544444543333333333332223565555555555555543
No 77
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=31.25 E-value=4.2e+02 Score=24.32 Aligned_cols=83 Identities=18% Similarity=0.090 Sum_probs=51.6
Q ss_pred ccc-cchhhHHHHHhh-cCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccCCChhHHHHHHHHHHHHHHHHH
Q 022614 195 ISP-FPYIIYNYCAVA-THVKYGPYFLGSLVGMVPEIFVTIYTGILIRTLADASHEHHFLSAPQIILNVIGFAASVAATI 272 (294)
Q Consensus 195 l~P-~P~~l~ny~aG~-t~v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l~~~~~~~~~~~~~~~~~~iig~vi~v~~~~ 272 (294)
++| +.++=.+..+|+ .+++-..=.=.|++=.+|-++ |..+-++.+..+.+ .+..++....+|++++.++++
T Consensus 158 l~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~il-----ga~~l~~~~~~~~~--~~~~~~~~~~ig~~~afv~g~ 230 (259)
T PF02673_consen 158 LIPGISRSGATITAGLLLGLDREEAARFSFLLSIPAIL-----GAGLLELKDLFSAG--LDSGSWPPLLIGFVVAFVVGY 230 (259)
T ss_pred cCCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhccc--cChhhHHHHHHHHHHHHHHHH
Confidence 689 789888887765 478877777777775556443 33333333322210 233456666778888777777
Q ss_pred HHHHHHHHHHHH
Q 022614 273 FFTVYAKRQLKI 284 (294)
Q Consensus 273 ~i~~~~kr~l~~ 284 (294)
...++..|-.++
T Consensus 231 l~i~~ll~~~~~ 242 (259)
T PF02673_consen 231 LAIKWLLRFLKR 242 (259)
T ss_pred HHHHHHHHHHhh
Confidence 776666665554
No 78
>PRK14402 membrane protein; Provisional
Probab=30.93 E-value=3.8e+02 Score=23.69 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=34.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhHHHHHHHhhhchHHHHHHHHHhcCCc---------chhhHHHHHHhcccc
Q 022614 137 LLIMSAVAVGI-SLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNW---------FHQFRTVALIRISPF 198 (294)
Q Consensus 137 l~~~iG~~lG~-~i~f~igR~~g~~i~~~l~~~~~~~~~~~~~~~~~~---------~~g~~~v~l~Rl~P~ 198 (294)
++..+|-.+|| ..+|+++|..+.|+++.-.+|+-....-|..++. + -+|...+.+.+..+.
T Consensus 7 l~~~~~YllGsip~~~~v~k~~g~DiR~~GSgN~GatNv~R~~G~~-~g~~v~l~D~lKG~l~v~l~~~~~~ 77 (198)
T PRK14402 7 LALLLAYLFGSIPAGAWVARTRGVDIRKVGSGNSGATNVLRSLGKG-PALVVAFFDVLKGGIAVLLARALGL 77 (198)
T ss_pred HHHHHHHHHHhhHHHHHHHHHcCCChhhcCCCCccHHHHHHHHChH-HHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34444555555 4678899965556877766665443333433321 0 236667777776653
No 79
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=30.91 E-value=74 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=19.5
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHH
Q 022614 117 LPSSPSMWVAGMTFGYGFGFLLIMS 141 (294)
Q Consensus 117 iP~~~l~~~aG~lfG~~~G~l~~~i 141 (294)
-|...+.++.|.++|...|+.++++
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788899999998888776654
No 80
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=30.71 E-value=91 Score=22.95 Aligned_cols=23 Identities=26% Similarity=0.700 Sum_probs=17.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 022614 127 GMTFGYGFGFLLIMSAVAVGISL 149 (294)
Q Consensus 127 G~lfG~~~G~l~~~iG~~lG~~i 149 (294)
|.+||.+.|.+++++=..+++.+
T Consensus 51 GILYGlVIGlil~~i~~~l~~~~ 73 (75)
T COG4064 51 GILYGLVIGLILCMIYILLGVAF 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888777776653
No 81
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=30.45 E-value=1.1e+02 Score=22.77 Aligned_cols=38 Identities=8% Similarity=-0.039 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 022614 256 QIILNVIGFAASVAATIFFTVYAKRQLKILQGEGESLL 293 (294)
Q Consensus 256 ~~~~~iig~vi~v~~~~~i~~~~kr~l~~~~~e~~~~~ 293 (294)
++.+...-++...++.+.-+|...+-..+..+||++++
T Consensus 37 emA~~laeiiav~lVl~GgYRilda~iarv~~eer~~~ 74 (80)
T PRK13727 37 WMAFFLAELIAAILVLFGAYRVLDAWIARVSREEREAL 74 (80)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555556666677777777777666666654
No 82
>COG3037 SgaT Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.36 E-value=60 Score=32.43 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=24.4
Q ss_pred cCChHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHH
Q 022614 116 LLPSSPSMWVAGMTFGY-----GFGFLLIMSAVAVGISLPYFI 153 (294)
Q Consensus 116 ~iP~~~l~~~aG~lfG~-----~~G~l~~~iG~~lG~~i~f~i 153 (294)
++|++...+=+...|++ ..|++.+.+|..+|..+...+
T Consensus 312 lVPnA~pAlD~aavypfapNAVl~GF~~~fiG~li~m~il~~~ 354 (481)
T COG3037 312 LVPNAVPALDCAAVYPFAPNAVLIGFLSGFIGQLIGMGILGGF 354 (481)
T ss_pred hCCCCccccccceecCCCcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 36776655555566654 567777777777777666533
No 83
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=30.33 E-value=1e+02 Score=24.92 Aligned_cols=27 Identities=7% Similarity=-0.087 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 256 QIILNVIGFAASVAATIFFTVYAKRQL 282 (294)
Q Consensus 256 ~~~~~iig~vi~v~~~~~i~~~~kr~l 282 (294)
++.-+.+..++++++.+++.+..|.+.
T Consensus 89 eiGSNFfp~il~l~L~~Wi~~kl~~~k 115 (117)
T PF07226_consen 89 EIGSNFFPSILCLILVFWIGYKLGFRK 115 (117)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 344445566666666666666665443
No 84
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=29.99 E-value=1.3e+02 Score=21.02 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhccccc
Q 022614 277 YAKRQLKILQGEGESL 292 (294)
Q Consensus 277 ~~kr~l~~~~~e~~~~ 292 (294)
+.|++..+.+++|++.
T Consensus 42 ~~r~~~~~~~e~~~~~ 57 (59)
T PF14880_consen 42 YNRRRRAEWIEREKQK 57 (59)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444344444433
No 85
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=29.74 E-value=4.5e+02 Score=25.02 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHhHH
Q 022614 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISL-PYFIGSHFLH 159 (294)
Q Consensus 118 P~~~l~~~aG~lfG~~~G~l~~~iG~~lG~~i-~f~igR~~g~ 159 (294)
.+..+.-..|..|....+.....++..+|..+ .+++++++.+
T Consensus 23 s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~ 65 (406)
T PF00474_consen 23 SAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRR 65 (406)
T ss_dssp SHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcc
Confidence 33444444555554433444455666666544 4556766654
No 86
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=29.43 E-value=69 Score=30.22 Aligned_cols=14 Identities=7% Similarity=0.320 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 022614 268 VAATIFFTVYAKRQ 281 (294)
Q Consensus 268 v~~~~~i~~~~kr~ 281 (294)
.++..++.||.||+
T Consensus 272 MvIIYLILRYRRKK 285 (299)
T PF02009_consen 272 MVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHh
Confidence 33344445554433
No 87
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=29.16 E-value=91 Score=24.22 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 022614 262 IGFAASVAATI 272 (294)
Q Consensus 262 ig~vi~v~~~~ 272 (294)
+++++++++.+
T Consensus 9 L~l~LA~lLli 19 (95)
T PF07172_consen 9 LGLLLAALLLI 19 (95)
T ss_pred HHHHHHHHHHH
Confidence 34444433333
No 88
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=28.87 E-value=1.2e+02 Score=28.66 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=21.1
Q ss_pred CchhHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 022614 213 KYGPYFLGSLVGMVPEIFVTIYTGILIRTLA 243 (294)
Q Consensus 213 ~~~~fll~t~iG~~P~~~i~~~~G~~~~~l~ 243 (294)
..+.+.+.|++ .+|.+++....|.....+.
T Consensus 255 ~mk~lTv~s~i-f~pptliagiyGMNf~~mP 284 (316)
T PRK11085 255 IIKIFSVVSVV-FLPPTLVASSYGMNFEFMP 284 (316)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhcccccCCCC
Confidence 34666677766 5788888888888765444
No 89
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=28.81 E-value=3.9e+02 Score=24.19 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=27.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhhch
Q 022614 122 SMWVAGMTFGYGFGFLLIMSAVAVGISLPY-FIGSHFLHRIQGWLEKYP 169 (294)
Q Consensus 122 l~~~aG~lfG~~~G~l~~~iG~~lG~~i~f-~igR~~g~~i~~~l~~~~ 169 (294)
+.++.|+++|.|+ ....+|..+|.+++. .++|+.-+-..+.++..|
T Consensus 41 v~v~ig~l~~~~~--~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqp 87 (224)
T PF13829_consen 41 VFVLIGLLFGSWW--YWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQP 87 (224)
T ss_pred HHHHHHHHHccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567788888653 334456666666655 566766655555555444
No 90
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=28.79 E-value=1.8e+02 Score=19.40 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=17.0
Q ss_pred HHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHh
Q 022614 125 VAGMTFGYGFG--FLLIMSAVAVGISLPYFIGSHF 157 (294)
Q Consensus 125 ~aG~lfG~~~G--~l~~~iG~~lG~~i~f~igR~~ 157 (294)
++|.+.|...+ ..-+.+|+.+|+.+.+.++++.
T Consensus 8 ~~Ga~iG~~~g~~~~ga~iGa~vGa~~G~~ig~~~ 42 (46)
T PF13488_consen 8 AAGAAIGAATGGPGKGAAIGAAVGAAVGAAIGNYM 42 (46)
T ss_pred HHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444333 2334456666666666666654
No 91
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.67 E-value=1.1e+02 Score=23.51 Aligned_cols=9 Identities=44% Similarity=0.338 Sum_probs=3.6
Q ss_pred HHHHHHhhc
Q 022614 280 RQLKILQGE 288 (294)
Q Consensus 280 r~l~~~~~e 288 (294)
++..++++|
T Consensus 30 ~~~~kL~~e 38 (87)
T PF10883_consen 30 KQNAKLQKE 38 (87)
T ss_pred HHHHHHHHH
Confidence 333344444
No 92
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=28.65 E-value=92 Score=30.16 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 258 ILNVIGFAASVAATIFFTVYAKRQLK 283 (294)
Q Consensus 258 ~~~iig~vi~v~~~~~i~~~~kr~l~ 283 (294)
...+++++++.+++..+....|++.+
T Consensus 314 l~~iiailig~vvtavl~~~~k~~~~ 339 (359)
T PRK10478 314 LGYIAAVAVGAVVTAVCVNVLKSLAR 339 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccc
Confidence 34455666666666666666665443
No 93
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=28.39 E-value=1.5e+02 Score=19.57 Aligned_cols=27 Identities=7% Similarity=0.194 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 258 ILNVIGFAASVAATIFFTVYAKRQLKI 284 (294)
Q Consensus 258 ~~~iig~vi~v~~~~~i~~~~kr~l~~ 284 (294)
++.+++++...++..+++|.+..|.+.
T Consensus 13 VF~lVglv~i~iva~~iYRKw~aRkr~ 39 (43)
T PF08114_consen 13 VFCLVGLVGIGIVALFIYRKWQARKRA 39 (43)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566655544443
No 94
>PRK03818 putative transporter; Validated
Probab=28.38 E-value=6.6e+02 Score=25.69 Aligned_cols=20 Identities=5% Similarity=0.177 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022614 263 GFAASVAATIFFTVYAKRQL 282 (294)
Q Consensus 263 g~vi~v~~~~~i~~~~kr~l 282 (294)
|.+..++...++.+..|...
T Consensus 167 g~i~~il~~~~~~~~~~~~~ 186 (552)
T PRK03818 167 GICGILLSMWLIRLIFRINV 186 (552)
T ss_pred HHHHHHHHHHHHHHHhCCCh
Confidence 44333333334445554333
No 95
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=27.86 E-value=17 Score=32.85 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=18.3
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 022614 214 YGPYFLGSLVGMVPEIFVTIYTGILIRTLA 243 (294)
Q Consensus 214 ~~~fll~t~iG~~P~~~i~~~~G~~~~~l~ 243 (294)
.+.+.+.|++- +|.+++..+.|.....+.
T Consensus 234 m~~LT~~t~if-lPlt~i~g~fGMN~~~~p 262 (292)
T PF01544_consen 234 MKVLTIVTAIF-LPLTFITGIFGMNFKGMP 262 (292)
T ss_dssp HHHHHHHHHHH-HHHHHHTTSTTS-SS---
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhCCccCCC
Confidence 34566666664 888888888888776554
No 96
>PRK09546 zntB zinc transporter; Reviewed
Probab=27.69 E-value=1.1e+02 Score=28.60 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=20.1
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 022614 214 YGPYFLGSLVGMVPEIFVTIYTGILIRTLAD 244 (294)
Q Consensus 214 ~~~fll~t~iG~~P~~~i~~~~G~~~~~l~~ 244 (294)
.+...+.|++ .+|.+++..+.|.....+..
T Consensus 264 m~~Ltilt~I-flPlT~IaGiyGMNf~~mPe 293 (324)
T PRK09546 264 TYTMSLMAMV-FLPTTFLTGLFGVNLGGIPG 293 (324)
T ss_pred HHHHHHHHHH-HHHHHHHHhhhccccCCCCC
Confidence 3445566666 45888888888887655543
No 97
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=27.48 E-value=1.9e+02 Score=19.07 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 022614 268 VAATIFFTVYAKRQLKILQGEG 289 (294)
Q Consensus 268 v~~~~~i~~~~kr~l~~~~~e~ 289 (294)
++.++.=.|..+|++++.++.|
T Consensus 23 i~~~~~~~r~~~~~l~~~~~r~ 44 (45)
T TIGR03141 23 ILWSLLDRRRLLRELRRLEARE 44 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3444445667777777766654
No 98
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=27.38 E-value=2.8e+02 Score=22.06 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=30.9
Q ss_pred HHHHHHHhHHHHHHHHH-HHHHHHHHhhhhcccccCCChhHH-HHHHHHHHHHHHHHHHHHH
Q 022614 217 YFLGSLVGMVPEIFVTI-YTGILIRTLADASHEHHFLSAPQI-ILNVIGFAASVAATIFFTV 276 (294)
Q Consensus 217 fll~t~iG~~P~~~i~~-~~G~~~~~l~~~~~~~~~~~~~~~-~~~iig~vi~v~~~~~i~~ 276 (294)
|-...++|.+.....+. ...+.++...+..++..+. .+. ...++|+++.+++.|++++
T Consensus 40 ~dg~~llgL~i~a~aFi~Va~~a~~ty~Ei~~Gk~~W--~~fg~~v~VGviLLv~vIwLltk 99 (104)
T TIGR03745 40 YDGGILLGLLIAAIAFIGVAYHALGTYHEIRTGKATW--GDFGATVVVGAILLVVIIWLLTK 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhH--HhCcchhhhHhHHHHHHHHHHHH
Confidence 44556667666665554 3344556666665533211 121 3345666666666666654
No 99
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=27.25 E-value=6.4e+02 Score=25.17 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=7.5
Q ss_pred hHHHHHHHhhhchHHH
Q 022614 157 FLHRIQGWLEKYPKKA 172 (294)
Q Consensus 157 ~g~~i~~~l~~~~~~~ 172 (294)
+.+.+++.++++|+..
T Consensus 73 lv~~~~k~lrk~pk~i 88 (443)
T PRK12489 73 MLQIAERLLRRNPKYI 88 (443)
T ss_pred HHHHHHHHhccChhHH
Confidence 3333445555555543
No 100
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=27.21 E-value=4.3e+02 Score=23.20 Aligned_cols=40 Identities=10% Similarity=0.378 Sum_probs=18.8
Q ss_pred HHHHHhhcCCCchhHHHHHHHhHHHHHH--HHHHHHHHHHHhh
Q 022614 203 YNYCAVATHVKYGPYFLGSLVGMVPEIF--VTIYTGILIRTLA 243 (294)
Q Consensus 203 ~ny~aG~t~v~~~~fll~t~iG~~P~~~--i~~~~G~~~~~l~ 243 (294)
+..+.|+.+++. ++.....+|..-... +-.++|+.+.+..
T Consensus 17 vgi~~G~~~~~~-~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i 58 (206)
T TIGR02840 17 VGIAYGLRKIKI-PFLSNLIIAVISGLFIFISMLLGKFLAKFL 58 (206)
T ss_pred HHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666655 333444444332222 2235666665544
No 101
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=26.96 E-value=3.3e+02 Score=23.92 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=30.6
Q ss_pred hccCcCChHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Q 022614 112 FPTLLLPSSPS-MWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY 168 (294)
Q Consensus 112 ~P~~~iP~~~l-~~~aG~lfG~~~G~l~~~iG~~lG~~i~f~igR~~g~~i~~~l~~~ 168 (294)
+|.+.-|+++. .+..+--.+.+.+.+...++..+-+.+.|.+-++ .+++.|++++.
T Consensus 118 ~PllaGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~-a~~i~~~lG~~ 174 (203)
T PF01914_consen 118 IPLLAGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRF-ADKIMRRLGKT 174 (203)
T ss_pred hhhccChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHhhhH
Confidence 56666777663 3333333444555566666666666666655544 44466666654
No 102
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=26.64 E-value=51 Score=24.34 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 022614 269 AATIFFTVYAKRQLKILQGEGE 290 (294)
Q Consensus 269 ~~~~~i~~~~kr~l~~~~~e~~ 290 (294)
+...++..+++|+.+|..+|++
T Consensus 23 ~~~~wi~~Ra~~~~DKT~~eRQ 44 (72)
T PF13268_consen 23 VSGIWILWRALRKKDKTAKERQ 44 (72)
T ss_pred HHHHHHHHHHHHcCCCcHHHHH
Confidence 3344444555555555444443
No 103
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=26.26 E-value=3.7e+02 Score=22.08 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=24.1
Q ss_pred Hhcccc-chhhH--HHHHhhcCCCchhHHHHHHHhHHHHHHH
Q 022614 193 IRISPF-PYIIY--NYCAVATHVKYGPYFLGSLVGMVPEIFV 231 (294)
Q Consensus 193 ~Rl~P~-P~~l~--ny~aG~t~v~~~~fll~t~iG~~P~~~i 231 (294)
.-++|+ |.+.+ -.++-+.+.|..--++++.++ -|.+..
T Consensus 32 ig~~P~~g~~~~l~~~la~~~r~N~~aa~~~~~i~-nPlt~~ 72 (154)
T PF09835_consen 32 IGFLPIFGLQTVLAIALALLFRLNKPAAILGTWIS-NPLTIP 72 (154)
T ss_pred HHHHhcchHHHHHHHHHHHHHHccHHHHHHHHHHH-hHHHHH
Confidence 337884 55533 334456688888888888884 455543
No 104
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=26.16 E-value=1.1e+02 Score=22.19 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 022614 140 MSAVAVGISLPYFIGSHFLHRIQGWLEK 167 (294)
Q Consensus 140 ~iG~~lG~~i~f~igR~~g~~i~~~l~~ 167 (294)
.+|+++|+.++++++-.-|++.++.+.+
T Consensus 6 l~Ga~~Ga~~glL~aP~sG~e~R~~l~~ 33 (74)
T PF12732_consen 6 LAGAAAGAAAGLLFAPKSGKETREKLKD 33 (74)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4678888888888877767665555543
No 105
>COG4854 Predicted membrane protein [Function unknown]
Probab=26.07 E-value=1.7e+02 Score=23.70 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 022614 266 ASVAATIFFTVYAKRQLKILQGEGE 290 (294)
Q Consensus 266 i~v~~~~~i~~~~kr~l~~~~~e~~ 290 (294)
+.+...+....+.|+|.++.-|+||
T Consensus 36 ~af~ag~~~l~l~k~Rv~~vvEDER 60 (126)
T COG4854 36 IAFFAGAALLSLVKRRVDEVVEDER 60 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444556666778888888776665
No 106
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=26.02 E-value=2.5e+02 Score=26.27 Aligned_cols=76 Identities=22% Similarity=0.185 Sum_probs=41.8
Q ss_pred ccchhhHHHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHH
Q 022614 197 PFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTGILIRTLADASHEHHFLSAPQIILNVIGFAASVAATIFFTV 276 (294)
Q Consensus 197 P~P~~l~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l~~~~~~~~~~~~~~~~~~iig~vi~v~~~~~i~~ 276 (294)
|.+---+.+++|.+ ..+.++.+-...+.+..| .+.... -++-+|.+..+|.+..+++.+.+..
T Consensus 114 Pllll~l~lla~~~--------~~ti~~~v~ad~~~iv~~-laaa~~--------~~tykW~~y~ig~~a~lvvl~~l~~ 176 (285)
T COG5524 114 PLLLLYLGLLAGTS--------LWTIAGVVAADIIMIVTG-LAAALT--------HSTYKWAYYAIGAAAFLVVLAVLVT 176 (285)
T ss_pred hHHHHHHHHhcCCc--------HHHHHHHHHHHHHHHHHH-HHHHhh--------chhhhHHHHHHHHHHHHHHHHHHHh
Confidence 44444556666666 334444333344444444 111111 1346888899998887777776666
Q ss_pred HHHHHHHHHhhcc
Q 022614 277 YAKRQLKILQGEG 289 (294)
Q Consensus 277 ~~kr~l~~~~~e~ 289 (294)
-.+++.+....|.
T Consensus 177 ~~~~~a~~~~~~v 189 (285)
T COG5524 177 GFFAKAKTRGTEV 189 (285)
T ss_pred hhhhhhcccchHH
Confidence 5555555554444
No 107
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=24.73 E-value=7.1e+02 Score=24.87 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 022614 121 PSMWVAGMTFGYGFGFLLIMSAVAVGI-SLPYFIGSHF 157 (294)
Q Consensus 121 ~l~~~aG~lfG~~~G~l~~~iG~~lG~-~i~f~igR~~ 157 (294)
.++...|..|....+.+...+|..+|. ...+++++++
T Consensus 58 t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl 95 (493)
T COG0591 58 TFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRL 95 (493)
T ss_pred HHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555777766666666666654333 2333444443
No 108
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=24.64 E-value=7e+02 Score=27.62 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=8.5
Q ss_pred HHHHHhHHHHHH
Q 022614 219 LGSLVGMVPEIF 230 (294)
Q Consensus 219 l~t~iG~~P~~~ 230 (294)
+.|++|++|..+
T Consensus 978 ltti~gllPla~ 989 (1044)
T TIGR00915 978 LAFILGVVPLAI 989 (1044)
T ss_pred HHHHHHHHHHHH
Confidence 456678888765
No 109
>PRK09458 pspB phage shock protein B; Provisional
Probab=24.64 E-value=35 Score=25.48 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhcccccc
Q 022614 261 VIGFAASVAATIFFTVYAKRQLK--ILQGEGESLL 293 (294)
Q Consensus 261 iig~vi~v~~~~~i~~~~kr~l~--~~~~e~~~~~ 293 (294)
++-+++.|+-.|++-+|..|+.. .+.++|+++|
T Consensus 10 liiF~ifVaPiWL~LHY~sk~~~~~~Ls~~d~~~L 44 (75)
T PRK09458 10 LTIFVLFVAPIWLWLHYRSKRQGSQGLSQEEQQRL 44 (75)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHH
Confidence 34455556666777777664432 2444444433
No 110
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.46 E-value=4.4e+02 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.392 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022614 134 FGFLLIMSAVAVGISLPYFIGSHFLHRI 161 (294)
Q Consensus 134 ~G~l~~~iG~~lG~~i~f~igR~~g~~i 161 (294)
.|..+..+|..+.. +.+++.|++.+-.
T Consensus 142 ~~i~~~glGlll~~-~~~~l~k~~~~~~ 168 (181)
T PF08006_consen 142 FGIGLFGLGLLLIV-ITFYLTKLFIKLT 168 (181)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34444444443333 4556666665533
No 111
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=24.00 E-value=1.4e+02 Score=20.11 Aligned_cols=30 Identities=10% Similarity=0.290 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 256 QIILNVIGFAASVAATIFFTVYAKRQLKIL 285 (294)
Q Consensus 256 ~~~~~iig~vi~v~~~~~i~~~~kr~l~~~ 285 (294)
++...+++.++.+++++++.+..+|-.++.
T Consensus 13 ~~lP~iv~AilIl~vG~~va~~v~~~~~~~ 42 (53)
T PF05552_consen 13 AYLPNIVGAILILIVGWWVAKFVRKLVRRL 42 (53)
T ss_dssp GGHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666677777777666655543
No 112
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=23.93 E-value=3.3e+02 Score=21.82 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=37.1
Q ss_pred HhHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhchHHHHHHHHHh
Q 022614 130 FGYGFG--FLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAG 179 (294)
Q Consensus 130 fG~~~G--~l~~~iG~~lG~~i~f~igR~~g~~i~~~l~~~~~~~~~~~~~~ 179 (294)
+|...| -..+++-+.+|+++.-.+--.+.+++.+++.+++...++.+..+
T Consensus 8 ~gi~~Gl~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~ 59 (121)
T PF06695_consen 8 LGIALGLPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLE 59 (121)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444 46788888999999998888888889999988766665554443
No 113
>COG2261 Predicted membrane protein [Function unknown]
Probab=23.73 E-value=2e+02 Score=21.84 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=26.2
Q ss_pred HHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHhH
Q 022614 123 MWVAGMTFGYG-----FGFLLIMSAVAVGISLPYFIGSHFL 158 (294)
Q Consensus 123 ~~~aG~lfG~~-----~G~l~~~iG~~lG~~i~f~igR~~g 158 (294)
.+.++.+|+.+ .+...+++.+++|+++.-++.|.+.
T Consensus 40 A~vg~~l~~~~g~~~~~~~~~~~i~avIGAvIll~i~~~v~ 80 (82)
T COG2261 40 AFVGGWLLGALGFGGPGGNIASFIVAVIGAVILLAIVRLVR 80 (82)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666655 3567888899999999988888653
No 114
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.73 E-value=33 Score=34.84 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=32.5
Q ss_pred ccchhHHHHHHHHHHHhhhccCcCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHhHH
Q 022614 94 TTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP-YFIGSHFLH 159 (294)
Q Consensus 94 ~~~~~pvl~ill~~~~~~~P~~~iP~~~l~~~aG~lfG~~~G~l~~~iG~~lG~~i~-f~igR~~g~ 159 (294)
.|..+|++...+= .+||+..+-+. .+.|+.=|..-..+++..|+..|+.++ +-.+|+.|.
T Consensus 251 GGLaAP~IaAG~G---t~~~~iG~~g~---aat~~~T~aGsaav~ta~gaa~ga~~G~~kMa~R~g~ 311 (633)
T KOG2385|consen 251 GGLAAPAIAAGIG---TLFPTIGLGGF---AATGLGTGAGSAAVITAFGAAGGALTGMTKMAKRSGD 311 (633)
T ss_pred ccchhhHHhhchh---hheeccccchh---hHhhHhhccchhHHHHhhccccchhcchhhHhhhcCC
Confidence 4556675543322 35676444221 333433333444566667777777777 777777653
No 115
>PRK00068 hypothetical protein; Validated
Probab=23.68 E-value=1e+03 Score=26.35 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=17.9
Q ss_pred HHHhhcCCCchhHHHHHHHhHHHHHHHHHH
Q 022614 205 YCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234 (294)
Q Consensus 205 y~aG~t~v~~~~fll~t~iG~~P~~~i~~~ 234 (294)
...-+.++||.+++...++..+..+++.+.
T Consensus 156 igFY~F~LPf~~~l~~~l~~~~~~~~i~~~ 185 (970)
T PRK00068 156 LSFYAFKLPFYRSLLSYLLVLLILAFIITL 185 (970)
T ss_pred ceEEEEehHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777777777766655554444443
No 116
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=23.62 E-value=1.4e+02 Score=22.97 Aligned_cols=22 Identities=5% Similarity=-0.340 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 022614 268 VAATIFFTVYAKRQLKILQGEG 289 (294)
Q Consensus 268 v~~~~~i~~~~kr~l~~~~~e~ 289 (294)
.++.+.-++....-..+..+||
T Consensus 49 ~Lvl~GgYrILda~iarv~~ee 70 (93)
T PF09679_consen 49 GLVLSGGYRILDAWIARVSREE 70 (93)
T ss_pred HHhhhhhHHHHHHHHHHHhHHH
Confidence 3333444444444333333333
No 117
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=23.38 E-value=1.4e+02 Score=26.22 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 022614 136 FLLIMSAVAVGISLPYFIGSHFLH 159 (294)
Q Consensus 136 ~l~~~iG~~lG~~i~f~igR~~g~ 159 (294)
++++++|.++|..++|++.++..+
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~ 26 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINR 26 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777788888887777655
No 118
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=6.4e+02 Score=25.14 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=21.1
Q ss_pred CCCCCceeeccccCCCCCCCCCCCccchHHHHHHHHHHHH
Q 022614 25 NNKGDYLKLREYEEGEPGSPRRWSCGKVWYWVKLAFFLTS 64 (294)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~ 64 (294)
+-++-+++|...+- ..++.++|..-++.+|+.=-.+..+
T Consensus 201 ~~~~~~~~L~~~~~-~~~~~~ps~~~~ll~~ItdP~va~I 239 (436)
T COG1030 201 RVAGKLVTLQTTNA-PVETLEPSWRERLLNWITDPSVALI 239 (436)
T ss_pred ccccceEEEEecCc-eeEecCccHHHHHHHHhcCcHHHHH
Confidence 46677777754433 2233356666667777653333333
No 119
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=22.97 E-value=2.9e+02 Score=25.08 Aligned_cols=28 Identities=11% Similarity=-0.146 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 253 SAPQIILNVIGFAASVAATIFFTVYAKR 280 (294)
Q Consensus 253 ~~~~~~~~iig~vi~v~~~~~i~~~~kr 280 (294)
.+.-|+++.+|.++...+++.-+|..|-
T Consensus 197 psl~Wv~l~iG~iIi~tLtYvGwRKYrg 224 (232)
T PF09577_consen 197 PSLIWVMLSIGGIIIATLTYVGWRKYRG 224 (232)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777776666666665553
No 120
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=22.68 E-value=7.5e+02 Score=24.44 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=16.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 022614 123 MWVAGMTFGYGFGFLLIMSAVAVGISL-PYFIGSHF 157 (294)
Q Consensus 123 ~~~aG~lfG~~~G~l~~~iG~~lG~~i-~f~igR~~ 157 (294)
.-..|..|....+......|..+|..+ .+++++++
T Consensus 58 ~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~ 93 (487)
T TIGR02121 58 MGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRL 93 (487)
T ss_pred HhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455544433334444566666544 34455543
No 121
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.07 E-value=94 Score=29.22 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=22.1
Q ss_pred CCchhHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 022614 212 VKYGPYFLGSLVGMVPEIFVTIYTGILIRTLA 243 (294)
Q Consensus 212 v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l~ 243 (294)
--.+.+.+.|++ .+|.+++....|.....+.
T Consensus 260 ~imk~LTi~s~i-flPpTlIagiyGMNf~~mP 290 (322)
T COG0598 260 EIMKILTIVSTI-FLPPTLITGFYGMNFKGMP 290 (322)
T ss_pred HHHHHHHHHHHH-HHhhHHHHcccccCCCCCc
Confidence 334666667766 5788999888898776544
No 122
>PF14163 SieB: Superinfection exclusion protein B
Probab=21.58 E-value=3.5e+02 Score=22.26 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=16.6
Q ss_pred cCChHHHHHHHH----HHHhHHHHHHHHHHHH
Q 022614 116 LLPSSPSMWVAG----MTFGYGFGFLLIMSAV 143 (294)
Q Consensus 116 ~iP~~~l~~~aG----~lfG~~~G~l~~~iG~ 143 (294)
++|.+.+....- -.+++|.|.+..+..+
T Consensus 14 f~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s 45 (151)
T PF14163_consen 14 FLPESLLEWLNLDKFEIKYQPWIGLIFLFSVS 45 (151)
T ss_pred HCCHHHHHHhCcchHHHhcchHHHHHHHHHHH
Confidence 467777655433 3577787765555333
No 123
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=21.54 E-value=58 Score=30.33 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHhhh
Q 022614 136 FLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEK 167 (294)
Q Consensus 136 ~l~~~iG~~lG~~i~f~igR~~g~~-i~~~l~~ 167 (294)
.++.++-.-.+++.+|+.||.+|++ +-+.++.
T Consensus 154 vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISP 186 (285)
T PRK11624 154 LLYVMILVWGADSGAYMFGKLFGKHKLAPKVSP 186 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCC
Confidence 4455556778999999999999974 5555543
No 124
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=21.45 E-value=60 Score=29.71 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHhh
Q 022614 136 FLLIMSAVAVGISLPYFIGSHFLHR-IQGWLE 166 (294)
Q Consensus 136 ~l~~~iG~~lG~~i~f~igR~~g~~-i~~~l~ 166 (294)
.++.+++...+++.+|+.||.+|++ +.....
T Consensus 136 ~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iS 167 (265)
T COG0575 136 LLLLFLGVWAGDIGAYFVGRRFGKHKLAPKIS 167 (265)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCC
Confidence 5567778999999999999999985 443333
No 125
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=21.13 E-value=4.8e+02 Score=21.79 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 022614 121 PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEK 167 (294)
Q Consensus 121 ~l~~~aG~lfG~~~G~l~~~iG~~lG~~i~f~igR~~g~~i~~~l~~ 167 (294)
...+..|-.+|.++-+++..+.+++|..+.-.-|+...+++++.+.+
T Consensus 17 ~~~i~v~~~iG~~~tl~lvi~t~~lG~~l~r~~G~~~l~~~~~~~~~ 63 (148)
T PRK11463 17 AVFIAVASVIGVGWTLLLVILTSVLGVLLARSQGFKTLLRAQRKLAR 63 (148)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
No 126
>PRK10995 inner membrane protein; Provisional
Probab=21.00 E-value=5.9e+02 Score=22.54 Aligned_cols=57 Identities=11% Similarity=-0.055 Sum_probs=29.5
Q ss_pred hhccCcCChHHHHHHHHHH-Hh------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Q 022614 111 LFPTLLLPSSPSMWVAGMT-FG------YGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY 168 (294)
Q Consensus 111 ~~P~~~iP~~~l~~~aG~l-fG------~~~G~l~~~iG~~lG~~i~f~igR~~g~~i~~~l~~~ 168 (294)
.+|.+.-|+++.++.+=.. ++ .+........+..+++.+.|.+-++ .+++++++++.
T Consensus 125 a~PllaGPgtI~~~i~l~~~~~~~~~~~~~~~~~~~v~ai~~~~~~~~l~l~~-a~~l~~~LG~~ 188 (221)
T PRK10995 125 AMPSTAGPGTIAMIISSASTIAEGSTFADWVLMVAPPLIFLLVALILWGSLRS-SGAIMRLLGKG 188 (221)
T ss_pred ccccccCcHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 3566667877654443221 11 1111233333444566666666655 56677777754
No 127
>PF10063 DUF2301: Uncharacterized integral membrane protein (DUF2301); InterPro: IPR019275 This family contains uncharacterised integral membrane proteins.
Probab=20.99 E-value=2.4e+02 Score=23.49 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=22.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 022614 123 MWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQ 162 (294)
Q Consensus 123 ~~~aG~lfG~~~G~l~~~iG~~lG~~i~f~igR~~g~~i~ 162 (294)
...-|.++|.........+-++-+.....+..|++..++.
T Consensus 85 ~llLghl~g~~~~~~~~~ll~~~~~L~~i~A~rK~~mPl~ 124 (135)
T PF10063_consen 85 LLLLGHLFGLLPASVELALLGIWALLFLIFAIRKWRMPLH 124 (135)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4444555665444443333334566677777787766543
No 128
>PRK10847 hypothetical protein; Provisional
Probab=20.98 E-value=5.8e+02 Score=22.45 Aligned_cols=24 Identities=0% Similarity=0.011 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 022614 138 LIMSAVAVGISLPYFIGSHFLHRI 161 (294)
Q Consensus 138 ~~~iG~~lG~~i~f~igR~~g~~i 161 (294)
..++.+++|+.++=.++.++||..
T Consensus 73 ~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 73 MMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677788888888888888863
No 129
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=20.75 E-value=1.5e+02 Score=27.27 Aligned_cols=17 Identities=29% Similarity=0.299 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhH
Q 022614 142 AVAVGISLPYFIGSHFL 158 (294)
Q Consensus 142 G~~lG~~i~f~igR~~g 158 (294)
|..+|+++++++|..+.
T Consensus 17 ~g~~Ga~~G~~~Gh~~d 33 (267)
T PRK09430 17 GGFFGALLGLLIGHMFD 33 (267)
T ss_pred hhHHHHHHHHHHHhHHh
Confidence 44445555555555443
No 130
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=20.13 E-value=2.8e+02 Score=18.52 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 022614 136 FLLIMSAVAVGISLPYFIGSHF 157 (294)
Q Consensus 136 ~l~~~iG~~lG~~i~f~igR~~ 157 (294)
....++.+++|+++.-++.|.+
T Consensus 25 ~~~~~i~aviGAiill~i~~~i 46 (48)
T PF04226_consen 25 SWGSFIVAVIGAIILLFIYRLI 46 (48)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777777766654
No 131
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=20.12 E-value=2.5e+02 Score=20.26 Aligned_cols=43 Identities=7% Similarity=0.291 Sum_probs=29.7
Q ss_pred hhhHHHHHhhcCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 022614 200 YIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTGILIRTL 242 (294)
Q Consensus 200 ~~l~ny~aG~t~v~~~~fll~t~iG~~P~~~i~~~~G~~~~~l 242 (294)
+++..+.+|+--++...|.+....|.+...+.++.+|...+-+
T Consensus 14 ~DIi~Fila~i~i~it~F~~n~~~g~i~i~I~l~l~G~isE~i 56 (63)
T PF06341_consen 14 FDIILFILAMIFINITAFLINQIAGLISIGITLFLAGLISEFI 56 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777788887777777677677777654433
Done!