Query 022614
Match_columns 294
No_of_seqs 256 out of 1930
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ezc_A UREA transporter 1; mem 37.8 93 0.0032 29.0 7.8 70 82-153 34-105 (384)
2 1ots_A Voltage-gated CLC-type 37.6 2.4E+02 0.0081 26.6 10.9 18 142-159 424-441 (465)
3 1afo_A Glycophorin A; integral 29.9 79 0.0027 19.7 3.9 34 250-283 5-38 (40)
4 3p5n_A RIBU, riboflavin uptake 29.7 32 0.0011 28.5 2.9 31 119-149 47-77 (189)
5 2k1k_A Ephrin type-A receptor 29.6 77 0.0026 19.4 3.9 27 251-277 7-33 (38)
6 2jwa_A Receptor tyrosine-prote 28.3 1.2E+02 0.004 19.4 5.3 27 256-282 13-39 (44)
7 4ev6_A Magnesium transport pro 24.6 38 0.0013 30.6 2.6 29 214-243 279-307 (339)
8 2knc_B Integrin beta-3; transm 24.0 1.1E+02 0.0036 21.9 4.4 10 279-288 41-50 (79)
9 2ifo_A Inovirus; helical virus 22.5 78 0.0027 20.4 3.0 23 259-281 23-45 (46)
10 2l2t_A Receptor tyrosine-prote 19.7 94 0.0032 19.8 3.0 41 249-289 4-44 (44)
No 1
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=37.75 E-value=93 Score=29.04 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=36.7
Q ss_pred ccchHHHHHHHHccchh-HHHHHHHH-HHHhhhccCcCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 022614 82 DKEVIPIINWETTTFST-PVLAVLVF-ASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFI 153 (294)
Q Consensus 82 ~~~l~~l~~wi~~~~~~-pvl~ill~-~~~~~~P~~~iP~~~l~~~aG~lfG~~~G~l~~~iG~~lG~~i~f~i 153 (294)
..|..++-+|.++.... ..+-.++- .++++|.- =|-+=+.++.|..++.++-.+.+.+|+++|...+.++
T Consensus 34 ~g~~~~~~~~~~~~~~~~~~i~~~LrG~gQV~f~~--n~lsGlliLigl~i~sp~~al~allG~~vstltA~ll 105 (384)
T 4ezc_A 34 TGDMKEFANWLKDKPQALQFVDWVLRGISQVVFVS--NPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLL 105 (384)
T ss_dssp STTCHHHHHHHHTSCHHHHHHHHHHHHHHGGGTCC--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHhcCCcHHHHHHHHhcCceEEEecC--CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 35778888998654321 11111222 23444322 1334467777888777666655555555555544433
No 2
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=37.59 E-value=2.4e+02 Score=26.58 Aligned_cols=18 Identities=0% Similarity=-0.221 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 022614 142 AVAVGISLPYFIGSHFLH 159 (294)
Q Consensus 142 G~~lG~~i~f~igR~~g~ 159 (294)
-.++.+.++|+++|.+++
T Consensus 424 pl~ia~~iA~~v~~~~~~ 441 (465)
T 1ots_A 424 PMIITGLGATLLAQFTGG 441 (465)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 445778888888888775
No 3
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=29.92 E-value=79 Score=19.67 Aligned_cols=34 Identities=38% Similarity=0.620 Sum_probs=21.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 250 HFLSAPQIILNVIGFAASVAATIFFTVYAKRQLK 283 (294)
Q Consensus 250 ~~~~~~~~~~~iig~vi~v~~~~~i~~~~kr~l~ 283 (294)
|+.+...+...+.+..+.+..++++--|.-|++.
T Consensus 5 h~fs~p~i~lII~~vmaGiIG~IllI~y~I~rl~ 38 (40)
T 1afo_A 5 HHFSEPEITLIIFGVMAGVIGTILLISYGIRRLI 38 (40)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445456666677777776666666666555554
No 4
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=29.71 E-value=32 Score=28.54 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 022614 119 SSPSMWVAGMTFGYGFGFLLIMSAVAVGISL 149 (294)
Q Consensus 119 ~~~l~~~aG~lfG~~~G~l~~~iG~~lG~~i 149 (294)
+......+|++|||+.|++...++..++..+
T Consensus 47 ~~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 47 SDVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp GGHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3456778888889888888888777777665
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=29.56 E-value=77 Score=19.45 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=15.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH
Q 022614 251 FLSAPQIILNVIGFAASVAATIFFTVY 277 (294)
Q Consensus 251 ~~~~~~~~~~iig~vi~v~~~~~i~~~ 277 (294)
.+|...+.-.++|.++.+++...+..+
T Consensus 7 ~ls~GaIAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 7 GLTGGEIVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceeeeehHHHHHHHHHHHHHHH
Confidence 456666666666666555544444433
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.32 E-value=1.2e+02 Score=19.35 Aligned_cols=27 Identities=30% Similarity=0.456 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022614 256 QIILNVIGFAASVAATIFFTVYAKRQL 282 (294)
Q Consensus 256 ~~~~~iig~vi~v~~~~~i~~~~kr~l 282 (294)
.+...++|+++.+++...+.-|.||+.
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHhheehhh
Confidence 345555665555555555666666653
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=24.55 E-value=38 Score=30.60 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=19.0
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 022614 214 YGPYFLGSLVGMVPEIFVTIYTGILIRTLA 243 (294)
Q Consensus 214 ~~~fll~t~iG~~P~~~i~~~~G~~~~~l~ 243 (294)
.+.+.+.|++ .+|.+++..+.|.....+.
T Consensus 279 mk~LTiit~I-flP~T~IaGiyGMNf~~mP 307 (339)
T 4ev6_A 279 MKILTMVTTI-FAVPMWITGIYGMNFSYLP 307 (339)
T ss_dssp HHHHHHHHHH-SSHHHHHHHHTTCCCSCCT
T ss_pred HHHHHHHHHH-HHHHHHHHhhccCcCCCCC
Confidence 3455566655 4688888888888665443
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.02 E-value=1.1e+02 Score=21.94 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=4.2
Q ss_pred HHHHHHHhhc
Q 022614 279 KRQLKILQGE 288 (294)
Q Consensus 279 kr~l~~~~~e 288 (294)
||..++-++|
T Consensus 41 rrE~~kFEkE 50 (79)
T 2knc_B 41 RKEFAKFEEE 50 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 9
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=22.50 E-value=78 Score=20.43 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022614 259 LNVIGFAASVAATIFFTVYAKRQ 281 (294)
Q Consensus 259 ~~iig~vi~v~~~~~i~~~~kr~ 281 (294)
..+.+.++.+.+.+.++++.||.
T Consensus 23 ~~IG~aVLgV~v~i~v~k~IRra 45 (46)
T 2ifo_A 23 AAIGGAVLTVMVGIKVYKWVRRA 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667788888888998875
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=19.74 E-value=94 Score=19.80 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=0.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022614 249 HHFLSAPQIILNVIGFAASVAATIFFTVYAKRQLKILQGEG 289 (294)
Q Consensus 249 ~~~~~~~~~~~~iig~vi~v~~~~~i~~~~kr~l~~~~~e~ 289 (294)
++..+...+...++|-++.+++......+..|+.++.++..
T Consensus 4 ~~~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kra 44 (44)
T 2l2t_A 4 PQHARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKKRA 44 (44)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCC
T ss_pred CCCCCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhccC
Done!