Query 022614
Match_columns 294
No_of_seqs 256 out of 1930
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 08:20:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022614.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022614hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 23.7 6.5 0.00047 25.3 -0.4 27 216-243 8-34 (64)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 21.1 1.7E+02 0.012 23.4 8.5 22 267-288 423-444 (447)
3 d1q90m_ f.23.25.1 (M:) PetM su 16.6 84 0.0061 17.0 4.2 24 132-155 4-28 (34)
4 d2vv5a3 f.34.1.1 (A:27-112) Me 16.3 54 0.004 21.4 3.2 20 265-284 9-28 (86)
5 d2oara1 f.16.1.1 (A:10-118) Ga 12.8 2.1E+02 0.015 19.8 8.4 35 252-286 58-92 (109)
6 d1q90l_ f.23.24.1 (L:) PetL su 6.6 2E+02 0.015 15.1 3.6 20 138-158 5-24 (32)
7 d1kqfb2 f.23.22.1 (B:246-290) 6.4 2.7E+02 0.019 16.2 3.8 29 52-80 8-38 (45)
8 d1nekd_ f.21.2.2 (D:) Succinat 6.3 3.8E+02 0.027 17.9 8.2 47 46-95 6-53 (113)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 6.3 1.9E+02 0.014 21.3 3.4 22 261-282 167-188 (189)
10 d1q90a3 f.23.23.1 (A:248-292) 6.3 2.7E+02 0.02 16.1 4.6 32 258-289 5-36 (45)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=23.70 E-value=6.5 Score=25.27 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=11.9
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 022614 216 PYFLGSLVGMVPEIFVTIYTGILIRTLA 243 (294)
Q Consensus 216 ~fll~t~iG~~P~~~i~~~~G~~~~~l~ 243 (294)
...+.|.+ .+|.+++....|.....+.
T Consensus 8 ~lT~it~i-flP~t~i~gifGMN~~~~P 34 (64)
T d2iuba2 8 VLTIIATI-FMPLTFIAGIYGMNFEYMP 34 (64)
T ss_dssp HHHHHHHH-HHHHHHHTTSCC-------
T ss_pred HHHHHHHH-HHHHHHHHhhhccCCCCCC
Confidence 34444444 4677777777776654443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.09 E-value=1.7e+02 Score=23.41 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 022614 267 SVAATIFFTVYAKRQLKILQGE 288 (294)
Q Consensus 267 ~v~~~~~i~~~~kr~l~~~~~e 288 (294)
+.++...+.+.-|||.++..+|
T Consensus 423 ~~~~~~~~~~~~~~r~~~~~~e 444 (447)
T d1pw4a_ 423 AVILLIVVMIGEKRRHEQLLQE 444 (447)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHhccccHHHHHHh
Confidence 3333333434444444444444
No 3
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=16.60 E-value=84 Score=17.01 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH
Q 022614 132 YGFGFLLIMSAVA-VGISLPYFIGS 155 (294)
Q Consensus 132 ~~~G~l~~~iG~~-lG~~i~f~igR 155 (294)
+..|..+.++|.+ +|-.++|.+-|
T Consensus 4 fiagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 4 FIAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHHHHHHHhhee
Confidence 4455666666653 46666776655
No 4
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=16.32 E-value=54 Score=21.44 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022614 265 AASVAATIFFTVYAKRQLKI 284 (294)
Q Consensus 265 vi~v~~~~~i~~~~kr~l~~ 284 (294)
++.+.+++++.|+.+|..++
T Consensus 9 l~il~i~~~i~~~i~~~~~~ 28 (86)
T d2vv5a3 9 LAIIIVGLIIARMISNAVNR 28 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666655444
No 5
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.82 E-value=2.1e+02 Score=19.75 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=14.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022614 252 LSAPQIILNVIGFAASVAATIFFTVYAKRQLKILQ 286 (294)
Q Consensus 252 ~~~~~~~~~iig~vi~v~~~~~i~~~~kr~l~~~~ 286 (294)
+..+..+-.++-+++...+.+++.....+++++.+
T Consensus 58 i~~G~fi~a~InFlIiA~vv~F~vvk~~n~~~~k~ 92 (109)
T d2oara1 58 IDLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKG 92 (109)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34444544455555444333333333334444433
No 6
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.63 E-value=2e+02 Score=15.09 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 022614 138 LIMSAVAVGISLPYFIGSHFL 158 (294)
Q Consensus 138 ~~~iG~~lG~~i~f~igR~~g 158 (294)
.+.+|..+|+. .|-+|-++|
T Consensus 5 ~syvglligal-~~tlgiylg 24 (32)
T d1q90l_ 5 TSYVGLLIGAL-VFTLGIYLG 24 (32)
T ss_dssp HHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHH
Confidence 44445555442 344444443
No 7
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=6.39 E-value=2.7e+02 Score=16.23 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--cccc
Q 022614 52 VWYWVKLAFFLTSVGLLAAVFIKWV--GPFF 80 (294)
Q Consensus 52 ~~~~~kl~~~~~~l~~l~~~~~~~~--~p~~ 80 (294)
|+-++|=+..+.+.++++..++||. +|-.
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~fHYv~vGPn~ 38 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIFHYIGIGPNK 38 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHCCBC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhheeCCCc
Confidence 4455666666666666666667774 6643
No 8
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=6.32 E-value=3.8e+02 Score=17.94 Aligned_cols=47 Identities=9% Similarity=-0.059 Sum_probs=23.9
Q ss_pred CCCccchHHH-HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHcc
Q 022614 46 RWSCGKVWYW-VKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWETTT 95 (294)
Q Consensus 46 ~~~~~~~~~~-~kl~~~~~~l~~l~~~~~~~~~p~~~~~~l~~l~~wi~~~ 95 (294)
.+|....+|+ .|+.+++.+...+..+ +.+.. ....+-++..+|.+++
T Consensus 6 ~~rsG~~~W~~qRvSAv~l~~l~~~~~-~~~~~--~~~~~y~~~~~~~~~~ 53 (113)
T d1nekd_ 6 LGRNGVHDFILVRATAIVLTLYIIYMV-GFFAT--SGELTYEVWIGFFASA 53 (113)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHH-HHHTT--TSSCCHHHHHHHHSSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--cCCCCHHHHHHHHhCh
Confidence 3444444444 4455555444433333 44321 2345778888888443
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=6.26 E-value=1.9e+02 Score=21.32 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022614 261 VIGFAASVAATIFFTVYAKRQL 282 (294)
Q Consensus 261 iig~vi~v~~~~~i~~~~kr~l 282 (294)
+.|+++.++..+...|..||++
T Consensus 167 l~G~l~G~~~g~~~~~~~k~~~ 188 (189)
T d2nr9a1 167 ISGLIVGLIWGFIDSKLRKNSL 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccccc
Confidence 3466666666666655555554
No 10
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.25 E-value=2.7e+02 Score=16.15 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022614 258 ILNVIGFAASVAATIFFTVYAKRQLKILQGEG 289 (294)
Q Consensus 258 ~~~iig~vi~v~~~~~i~~~~kr~l~~~~~e~ 289 (294)
+...+.+++++.+.=.+-..-||+.++.+..|
T Consensus 5 v~gll~F~~~v~laQi~LVLKKKQfEKVQ~aE 36 (45)
T d1q90a3 5 IQGLLVFFSFVLLTQVLLVLKKKQFEKVQLAE 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!