BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022615
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Query: 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEE--LSQAYASGDVFVMPSESETLGLV 175
+A++ +GDGP + ++ + + LG++ +++ A D+ ++ SE E+ GLV
Sbjct: 241 DAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLV 300
Query: 176 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETM 235
+LEAM+ G+P +G R GGIP++I Q G GYL GD + LL ++EL M
Sbjct: 301 LLEAMACGVPCIGTRVGGIPEVI---QHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNM 357
Query: 236 GQAARQEM 243
G+ AR+ +
Sbjct: 358 GERARESV 365
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Query: 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEE--LSQAYASGDVFVMPSESETLGLV 175
+A++ +GDGP + ++ + + LG++ +++ A D+ ++ SE E+ GLV
Sbjct: 261 DAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLV 320
Query: 176 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETM 235
+LEAM+ G+P +G R GGIP++I Q G GYL GD + LL ++EL M
Sbjct: 321 LLEAMACGVPCIGTRVGGIPEVI---QHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNM 377
Query: 236 GQAARQEM 243
G+ AR+ +
Sbjct: 378 GERARESV 385
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 57 NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP-DKPLIVHVGRL----GVEKSLDFLKR 111
++I + G D E + P + R R G P ++ VGRL G + + +
Sbjct: 188 DRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAA 247
Query: 112 VMDRLPEARI-AFIGDGP---------YREELEKMFTGMPAVFTGMLLGEELSQAYASGD 161
+ DR P+ + I GP YR E++ F EL Y + D
Sbjct: 248 LFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAAD 307
Query: 162 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 221
+ +PS +E+ GLV +EA +SG PV+ R GG+P + E + G + +P D L+
Sbjct: 308 IVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALAT 367
Query: 222 LEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 264
LL + E R MG+ A + + W AAT + YN AI
Sbjct: 368 ---LLDDDETRIRMGEDAVEHARTFSW-AATAAQLSSLYNDAI 406
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 57 NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP-DKPLIVHVGRL----GVEKSLDFLKR 111
++I + G D E + P + R R G P ++ VGRL G + + +
Sbjct: 208 DRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAA 267
Query: 112 VMDRLPEARI-AFIGDGP---------YREELEKMFTGMPAVFTGMLLGEELSQAYASGD 161
+ DR P+ + I GP YR E++ F EL Y + D
Sbjct: 268 LFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAAD 327
Query: 162 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 221
+ +PS +E+ GLV +EA +SG PV+ R GG+P + E + G + +P D L+
Sbjct: 328 IVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALAT 387
Query: 222 LEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 264
LL + E R MG+ A + + W AAT + YN AI
Sbjct: 388 ---LLDDDETRIRMGEDAVEHARTFSW-AATAAQLSSLYNDAI 426
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 64 KGVDSESFHPRFRSSEMRWRLSNGEPDK-PLIVHVGRLGVEKSLDFLKRVMDRL----PE 118
GVD + F P + R G D P+I RL K D L + M ++ P+
Sbjct: 170 SGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPD 229
Query: 119 ARIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSES------- 169
A++ +G G Y L ++ T + F G L +++ A+ D+F MP+ +
Sbjct: 230 AQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDV 289
Query: 170 ETLGLVVLEAMSSGIPVVGVRAGGIPDII 198
E LG+V LEA + G+PV+ +GG P+ +
Sbjct: 290 EGLGIVYLEAQACGVPVIAGTSGGAPETV 318
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 64 KGVDSESFHPRFRSSEMRWRLSNGEPDK-PLIVHVGRLGVEKSLDFLKRVMDRL----PE 118
GVD + F P + R G D P+I RL K D L + M ++ P+
Sbjct: 170 SGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPD 229
Query: 119 ARIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSES------- 169
A++ +G G Y L ++ T + F G L +++ A+ D+F MP+ +
Sbjct: 230 AQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDV 289
Query: 170 ETLGLVVLEAMSSGIPVVGVRAGGIPDII 198
E LG+V LEA + G+PV+ +GG P+ +
Sbjct: 290 EGLGIVYLEAQACGVPVIAGTSGGAPETV 318
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 88 EPDKPLIVHVGRL----GVEKSLDFLKRVMDRLPEARIAFIG----DGP-----YREELE 134
+P+KP+I V R G+ ++ ++V +++P ++ +G D P + + L
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLR 287
Query: 135 KMFTGMPAVFTGMLLG---EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 191
K+ L+G E++ + DV + S E GL V EAM G PV+G
Sbjct: 288 KIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAV 347
Query: 192 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 245
GGI I DG+ G+L D ++ + + LL + E+ + MG A++ + K
Sbjct: 348 GGIKFQIV---DGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRK 396
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 88 EPDKPLIVHVGRL----GVEKSLDFLKRVMDRLPEARIAFIG----DGP-----YREELE 134
+P+KP+I V R G+ ++ ++V +++P ++ +G D P + + L
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLR 287
Query: 135 KMFTGMPAVFTGMLLG---EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 191
K+ L+G E++ + DV + S GL V EAM G PV+G
Sbjct: 288 KIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIRAGFGLTVTEAMWKGKPVIGRAV 347
Query: 192 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 245
GGI I DG+ G+L D ++ + + LL + E+ + MG A++ + K
Sbjct: 348 GGIKFQIV---DGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRK 396
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 151 EELSQAYA----SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKI 206
+EL+ YA G VF + S E GL +EAM+SG+P V R GG +I+ GK
Sbjct: 346 QELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEIL---DGGKY 402
Query: 207 GYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATR 253
G L +P D +D L ++E + +Q + E+Y W+ R
Sbjct: 403 GVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETAR 450
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 25/203 (12%)
Query: 64 KGVDSESF--------HPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 115
GVD SF +PR E R L G D+P R G+ L L +++ R
Sbjct: 188 NGVDVASFADAPLLDGYPR----EGRTVLFLGRYDEP------RKGMAVLLAALPKLVAR 237
Query: 116 LPEARIAFIGDGPYREELEKMFTGMPAV--FTGMLLGEELSQAYASGDVFVMPS-ESETL 172
P+ I +G G +EL + + F G + + A S DV+ P E+
Sbjct: 238 FPDVEILIVGRGD-EDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESF 296
Query: 173 GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELR 232
G+V++EAM++G VV ++ DG G L D D + L +L + +LR
Sbjct: 297 GIVLVEAMAAGTAVVASDLDAFRRVL---ADGDAGRLVPVDDADGMAAALIGILEDDQLR 353
Query: 233 ETMGQAARQEMEKYDWRAATRTI 255
A + + +YDW + I
Sbjct: 354 AGYVARASERVHRYDWSVVSAQI 376
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 21/174 (12%)
Query: 88 EPDKPLIVHVGRL----GVEKSLDFLKRVMDRLPEARIAFIG----DGP-----YREELE 134
+P+KP+I V R G+ ++ ++V +++P ++ +G D P + + L
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVXAHDDPEGWIYFEKTLR 287
Query: 135 KMFTGMPAVFTGMLLG---EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 191
K+ L+G E++ + DV + S E GL V EA G PV+G
Sbjct: 288 KIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQXSIREGFGLTVTEAXWKGKPVIGRAV 347
Query: 192 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 245
GGI I DG+ G+L D ++ + + LL + E+ + G A++ + K
Sbjct: 348 GGIKFQIV---DGETGFLVR--DANEAVEVVLYLLKHPEVSKEXGAKAKERVRK 396
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGML--- 148
PLI +GRL +K D + + L + + + G +++ EK+ M + G +
Sbjct: 328 PLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAV 387
Query: 149 --LGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGK 205
L+ +G DV +PS E GL+ L+ M G P GG+ D + E + G
Sbjct: 388 VKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTG- 446
Query: 206 IGYLFNPGDLD-DC 218
F+ G L DC
Sbjct: 447 ----FHMGRLSVDC 456
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 82 WRLSNG-EPDKPLIVHVG----RLGVEKSLDFLKRVMDRLPEARIAFI--GDGPYREELE 134
+R NG + + L++ VG R GV++S++ L + + L + F+ D P + E
Sbjct: 186 YRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEAL 245
Query: 135 KMFTGMPA---VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 191
G+ + F+G ++S+ A+ D+ + P+ E G+V+LEA+++G+PV+
Sbjct: 246 AEKLGVRSNVHFFSGR---NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAV 302
Query: 192 GGIPDIIPEDQDGK-IGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 247
G I + G I F+ L++ L K L LR + AR + D
Sbjct: 303 CGYAHYIADANCGTVIAEPFSQEQLNEVLRK---ALTQSPLRMAWAENARHYADTQD 356
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 19/182 (10%)
Query: 57 NKIRIWKKGVD----SESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLG-VEKSLDFLK 110
KI G+D +ES+ R + LS G + + +GR +K +D L
Sbjct: 212 GKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLL 271
Query: 111 RVMDRLP------EARIAFIGDGP-----YREELEKMFTGMPAVFTGMLLGEELSQAYAS 159
+ ++ L E R IG G + LE+ G V T ML E + + Y S
Sbjct: 272 KAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-HGNVKVITEMLSREFVRELYGS 330
Query: 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCL 219
D ++PS E GLV LEAM G + GG+ DII ++ G + +PG+L + +
Sbjct: 331 VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIIT-NETGILVKAGDPGELANAI 389
Query: 220 SK 221
K
Sbjct: 390 LK 391
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 19/182 (10%)
Query: 57 NKIRIWKKGVD----SESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLG-VEKSLDFLK 110
KI G+D +ES+ R + LS G + + +GR +K +D L
Sbjct: 213 GKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLL 272
Query: 111 RVMDRLP------EARIAFIGDGP-----YREELEKMFTGMPAVFTGMLLGEELSQAYAS 159
+ ++ L E R IG G + LE+ G V T ML E + + Y S
Sbjct: 273 KAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-HGNVKVITEMLSREFVRELYGS 331
Query: 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCL 219
D ++PS E GLV LEAM G + GG+ DII ++ G + +PG+L + +
Sbjct: 332 VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIIT-NETGILVKAGDPGELANAI 390
Query: 220 SK 221
K
Sbjct: 391 LK 392
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 19/182 (10%)
Query: 57 NKIRIWKKGVD----SESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLG-VEKSLDFLK 110
KI G+D +ES+ R + LS G + + +GR +K +D L
Sbjct: 212 GKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLL 271
Query: 111 RVMDRLP------EARIAFIGDGP-----YREELEKMFTGMPAVFTGMLLGEELSQAYAS 159
+ ++ L E R IG G + LE+ G V T ML E + + Y S
Sbjct: 272 KAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEK-HGNVKVITEMLSREFVRELYGS 330
Query: 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCL 219
D ++PS E GLV LEAM G + GG+ DII ++ G + +PG+L + +
Sbjct: 331 VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIIT-NETGILVKAGDPGELANAI 389
Query: 220 SK 221
K
Sbjct: 390 LK 391
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 95 VHVGRLGVEKSLDFLKRVMDRLPEARIAFIG---DGPYREELEKMFTGMP---AVFTGML 148
+ V R+ EK ++ V +L + ++ +G G + E + + F G +
Sbjct: 27 LSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIXKIAPDNVKFLGSV 86
Query: 149 LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY 208
EEL Y+ + ++ E GL +EA +SG PV+ V GG + + + K GY
Sbjct: 87 SEEELIDLYSRCKGLLCTAKDEDFGLTPIEAXASGKPVIAVNEGGFKETVINE---KTGY 143
Query: 209 LFN 211
L N
Sbjct: 144 LVN 146
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 103 EKSLDFLKRVMDRLP------EARIAFIGDGP-----YREELEKMFTGMPAVFTGMLLGE 151
+K +D L + ++ L E R IG G + LE+ G V T ML E
Sbjct: 49 QKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKH-GNVKVITEMLSRE 107
Query: 152 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFN 211
+ + Y S D ++PS E GLV LEAM G + GG+ DII ++ G + +
Sbjct: 108 FVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIIT-NETGILVKAGD 166
Query: 212 PGDLDDCLSK 221
PG+L + + K
Sbjct: 167 PGELANAILK 176
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 163 FVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP 212
FV P+ E GL V+EAM+ G+P GG +II GK G+ +P
Sbjct: 668 FVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVH---GKSGFHIDP 714
>pdb|3OY2|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY2|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY7|A Chain A, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
pdb|3OY7|B Chain B, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
Length = 413
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 21/138 (15%)
Query: 90 DKPLIVHVGRLGVEKSLDFL----KRVMDRLPEARIAFIGDGPYREEL--------EKMF 137
D L +++ R K LD R + + P+A++ F+ + + + E +
Sbjct: 183 DDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVA 242
Query: 138 TGMPAVFTGM---------LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 188
+G+ VFT + L E + Y + DV V S E GL E G P++
Sbjct: 243 SGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLII 302
Query: 189 VRAGGIPDIIPEDQDGKI 206
GG D D KI
Sbjct: 303 SAVGGADDYFSGDCVYKI 320
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 82 WRLSNG-EPDKPLIVHVG----RLGVEKSLDFLKRVMDRLPEARIAFI--GDGPYREELE 134
+R NG + + L++ VG R GV++S++ L + + L + F+ D P + E
Sbjct: 186 YRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEAL 245
Query: 135 KMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 194
G+ + ++S+ A+ D+ + P+ E G+V+LEA+++G+PV+ G
Sbjct: 246 AEKLGVRSNVHFFSGRNDVSELXAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGY 305
Query: 195 PDIIPEDQDGK-IGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 247
I + G I F+ L++ L K L LR + AR + D
Sbjct: 306 AHYIADANCGTVIAEPFSQEQLNEVLRK---ALTQSPLRXAWAENARHYADTQD 356
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 163 FVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP 212
FV P+ E GL V+EA + G+P GG +II GK G+ +P
Sbjct: 668 FVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVH---GKSGFHIDP 714
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 29/181 (16%)
Query: 61 IWKKGVDSESFHPRFRSSEMRWRLSN----------GEPDKPLIVHVGRLGVEKSLDFLK 110
+W D H + ++ ++ R N + PL + RL +K +D +
Sbjct: 252 VWNPATD-HLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMA 310
Query: 111 RVMDRLPE--ARIAFIGDGPYREELEKMFT-----GMPAVFTGMLLGEELSQAYASG-DV 162
+D + R+ +G G E + G V G E LS +G D
Sbjct: 311 EAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY--NEPLSHLMQAGCDA 368
Query: 163 FVMPSESETLGLVVLEAMSSG-IPVVGVRAGGIPDIIPEDQDGKI------GYLFNPGDL 215
++PS E GL L A+ G IPVV R GG+ D + + + G F+P L
Sbjct: 369 IIIPSRFEPCGLTQLYALRYGCIPVV-ARTGGLADTVIDANHAALASKAATGVQFSPVTL 427
Query: 216 D 216
D
Sbjct: 428 D 428
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 29/181 (16%)
Query: 61 IWKKGVDSESFHPRFRSSEMRWRLSN----------GEPDKPLIVHVGRLGVEKSLDFLK 110
+W D H + ++ ++ R N + PL + RL +K +D
Sbjct: 252 VWNPATD-HLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLXA 310
Query: 111 RVMDRLPE--ARIAFIGDGPYREELEKMFT-----GMPAVFTGMLLGEELSQAYASG-DV 162
+D + R+ +G G E + G V G E LS +G D
Sbjct: 311 EAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY--NEPLSHLXQAGCDA 368
Query: 163 FVMPSESETLGLVVLEAMSSG-IPVVGVRAGGIPDIIPEDQDGKI------GYLFNPGDL 215
++PS E GL L A+ G IPVV R GG+ D + + + G F+P L
Sbjct: 369 IIIPSRFEPCGLTQLYALRYGCIPVV-ARTGGLADTVIDANHAALASKAATGVQFSPVTL 427
Query: 216 D 216
D
Sbjct: 428 D 428
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 92 PLIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGML- 148
PL V RL +K LD + + L E ++A +G G L++ F A + G +
Sbjct: 293 PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD--PVLQEGFLAAAAEYPGQVG 350
Query: 149 ----LGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE 200
E S G DV ++PS E GL L + G + R GG+ D + +
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 92 PLIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGML- 148
PL V RL +K LD + + L E ++A +G G L++ F A + G +
Sbjct: 293 PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD--PVLQEGFLAAAAEYPGQVG 350
Query: 149 ----LGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE 200
E S G DV ++PS E GL L + G + R GG+ D + +
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 92 PLIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGML- 148
PL V RL +K LD + + L E ++A +G G L++ F A + G +
Sbjct: 293 PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD--PVLQEGFLAAAAEYPGQVG 350
Query: 149 ----LGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE 200
E S G DV ++PS GL L + G + R GG+ D + +
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFAPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407
>pdb|2YFP|A Chain A, Structure Of Yellow-Emission Variant Of Gfp
Length = 236
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y SG+V++M + +
Sbjct: 137 HKLEYNYNSGNVYIMADKQKN 157
>pdb|1JBY|A Chain A, Crystal Structure Analysis Of A Dual-Wavelength Emission
Green Fluorescent Protein Variant At Low Ph
pdb|1JBZ|A Chain A, Crystal Structure Analysis Of A Dual-Wavelength Emission
Green Fluorescent Protein Variant At High Ph
Length = 236
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y SG+V++M + +
Sbjct: 137 HKLEYNYNSGNVYIMADKQKN 157
>pdb|2FWQ|A Chain A, Reduced Enolate Chromophore Intermediate For Y66h Gfp
Variant
Length = 237
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y SG+V++ + +
Sbjct: 138 HKLEYNYNSGNVYITADKQKN 158
>pdb|1YJ2|A Chain A, Cyclized, Non-Dehydrated Post-Translational Product For
S65a Y66s H148g Gfp Variant
Length = 237
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y SG+V++ + +
Sbjct: 138 HKLEYNYNSGNVYITADKQKN 158
>pdb|1QY3|A Chain A, Crystal Structure Of Precyclized Intermediate For The
Green Fluorescent Protein R96a Variant (B)
Length = 229
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 79 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 138
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++ + +
Sbjct: 139 HKLEYNYNSHNVYITADKQKN 159
>pdb|1QYF|A Chain A, Crystal Structure Of Matured Green Fluorescent Protein
R96a Variant
Length = 228
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++ + +
Sbjct: 138 HKLEYNYNSHNVYITADKQKN 158
>pdb|2AWM|A Chain A, Gfp R96a Chromophore Maturation Recovery Mutant R96a Q183r
Length = 228
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++ + +
Sbjct: 138 HKLEYNYNSHNVYITADKQKN 158
>pdb|1QXT|A Chain A, Crystal Structure Of Precyclized Intermediate For The
Green Fluorescent Protein R96a Variant (A)
Length = 230
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++ + +
Sbjct: 140 HKLEYNYNSHNVYITADKQKN 160
>pdb|1YHI|A Chain A, Uncyclized Precursor Structure Of S65a Y66s R96a Gfp
Variant
Length = 239
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++ + +
Sbjct: 140 HKLEYNYNSHNVYITADKQKN 160
>pdb|2HFC|A Chain A, Structure Of S65t Y66f R96a Gfp Variant In Precursor State
Length = 239
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++ + +
Sbjct: 140 HKLEYNYNSHNVYITADKQKN 160
>pdb|2Q6P|A Chain A, The Chemical Control Of Protein Folding: Engineering A
Superfolder Green Fluorescent Protein
Length = 236
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMXEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|2YE1|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein
Mturquoise-Gl (K206a Mutant)
Length = 243
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y SG+V++ + +
Sbjct: 138 HKLEYNYISGNVYITADKQKN 158
>pdb|2DUG|A Chain A, Crystal Structure Of A Green Fluorescent Protein S65tH148N
At Ph 5
pdb|2DUH|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148N AT PH 9.5
Length = 236
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSNNVYIMADKQKN 157
>pdb|2HQZ|A Chain A, Crystal Structure Of L42h Design Intermediate For Gfp
Metal Ion Reporter
Length = 236
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|2HJO|A Chain A, Crystal Structure Of V224h Design Intermediate For Gfp
Metal Ion Reporter
Length = 236
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|2OKW|A Chain A, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|B Chain B, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|C Chain C, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|D Chain D, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|E Chain E, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|F Chain F, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKY|A Chain A, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKY|B Chain B, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
Length = 236
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|3VHT|B Chain B, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion Protein
In Complex With Ubiquitin
Length = 271
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|4BDU|A Chain A, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|B Chain B, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|C Chain C, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|D Chain D, Bax Bh3-in-groove Dimer (gfp)
Length = 309
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|3VHT|A Chain A, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion Protein
In Complex With Ubiquitin
Length = 233
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|4EUL|A Chain A, Crystal Structure Of Enhanced Green Fluorescent Protein To
1.35a Resolution Reveals Alternative Conformations For
Glu222
Length = 237
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 138 HKLEYNYNSHNVYIMADKQKN 158
>pdb|3U8P|A Chain A, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|B Chain B, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|C Chain C, Cytochrome B562 Integral Fusion With Egfp
Length = 347
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 188 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 247
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 248 HKLEYNYNSHNVYIMADKQKN 268
>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein- Ubiquitin Fusion Protein
Length = 307
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|3OGO|A Chain A, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|B Chain B, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|C Chain C, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|D Chain D, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
Length = 247
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 88 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 147
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 148 HKLEYNYNSHNVYIMADKQKN 168
>pdb|1RMM|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria Green
Fluorescent Proteins With An Expanded Genetic Code
pdb|1RMP|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria Green
Fluorescent Proteins With An Expanded Genetic Code
Length = 226
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 76 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 135
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 136 HKLEYNYNSHNVYIMADKQKN 156
>pdb|2Y0G|A Chain A, X-Ray Structure Of Enhanced Green Fluorescent Protein
(Egfp)
Length = 250
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 91 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 150
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 151 HKLEYNYNSHNVYIMADKQKN 171
>pdb|2H9W|A Chain A, Green Fluorescent Protein Ground States: The Influence Of
A Second Protonation Site Near The Chromophore
Length = 238
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|2H6V|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins- E2(Gfp) Apo Form
pdb|2O24|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-Cl Complex
pdb|2O29|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-Br Complex
pdb|2O2B|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-I Complex
Length = 242
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 83 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 142
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 143 HKLEYNYNSHNVYIMADKQKN 163
>pdb|3MY7|A Chain A, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|B Chain B, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|C Chain C, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|D Chain D, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
Length = 452
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 176 VLEAMSSGIPVVGVRAGGIPDIIPEDQD 203
V A SSG P +GV AG +P +I E D
Sbjct: 199 VKAAYSSGKPAIGVGAGNVPVVIDETAD 226
>pdb|1RMO|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria Green
Fluorescent Proteins With An Expanded Genetic Code
Length = 236
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|3AI4|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein - Mouse Polymerase Iota Ubiquitin Binding Motif
Fusion Protein
Length = 283
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 151 EELSQAYASGDVFVM 165
+L Y S +V++M
Sbjct: 140 HKLEYNYNSHNVYIM 154
>pdb|1YFP|A Chain A, Structure Of Yellow-Emission Variant Of Gfp
pdb|1YFP|B Chain B, Structure Of Yellow-Emission Variant Of Gfp
Length = 225
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 75 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 134
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 135 HKLEYNYNSHNVYIMADKQKN 155
>pdb|2WUR|A Chain A, Atomic Resolution Structure Of Gfp Measured On A Rotating
Anode
Length = 236
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|3V3D|A Chain A, Crystal Structure Of An Eyfp Single Mutant
Length = 257
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 98 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 157
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 158 HKLEYNYNSHNVYIMADKQKN 178
>pdb|1GFL|A Chain A, Structure Of Green Fluorescent Protein
pdb|1GFL|B Chain B, Structure Of Green Fluorescent Protein
Length = 238
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 79 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 138
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 139 HKLEYNYNSHNVYIMADKQKN 159
>pdb|2DUE|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148D AT PH 10
pdb|2DUF|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148D AT PH 5.6
pdb|2DUI|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
H148d At Ph 9
Length = 236
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSDNVYIMADKQKN 157
>pdb|1EMM|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|2EMD|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|2EMN|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
Length = 237
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 78 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 138 HKLEYNYNSHNVYIMADKQKN 158
>pdb|1EMF|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|2EMO|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
Length = 237
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 78 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 138 HKLEYNYNSHNVYIMADKQKN 158
>pdb|3DPW|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1 Atmosphere Number 1: Structure 1 In A Series Of 26
High Pressure Structures
pdb|3DPX|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 5000 Atmospheres: Structure 26 In A Series Of 26 High
Pressure Structures
pdb|3DPZ|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 4000 Atmospheres Number 3: Structure 25 In A Series
Of 26 High Pressure Structures
pdb|3DQ1|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 4000 Atmospheres Number 2: Structure 24 In A Series
Of 26 High Pressure Structures
pdb|3DQ2|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 4000 Atmospheres Number 1: Structure 23 In A Series
Of 26 High Pressure Structures
pdb|3DQ3|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 2500 Atmospheres: Structure 22 In A Series Of 26 High
Pressure Structures
pdb|3DQ4|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 2000 Atmospheres Number 2: Structure 20 In A Series
Of 26 High Pressure Structures
pdb|3DQ5|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1960 Atmospheres: Structure 19 In A Series Of 26 High
Pressure Structures
pdb|3DQ6|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1920 Atmospheres Number 2: Structure 18 In A Series
Of 26 High Pressure Structures
pdb|3DQ7|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1920 Atmospheres Number 1: Structure 17 In A Series
Of 26 High Pressure Structures
pdb|3DQ8|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1500 Atmospheres Number 2: Structure 16 In A Series
Of 26 High Pressure Structures
pdb|3DQ9|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1500 Atmospheres Number 1: Structure 15 In A Series
Of 26 High Pressure Structures
pdb|3DQA|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 4: Structure 14 In A Series
Of 26 High Pressure Structures
pdb|3DQC|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 3: Structure 13 In A Series
Of 26 High Pressure Structures
pdb|3DQD|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 2: Structure 12 In A Series
Of 26 High Pressure Structures
pdb|3DQE|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 1: Structure 11 In A Series
Of 26 High Pressure Structures
pdb|3DQF|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 6: Structure 10 In A Series
Of 26 High Pressure Structures
pdb|3DQH|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 5: Structure 9 In A Series Of
26 High Pressure Structures
pdb|3DQI|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 4: Structure 8 In A Series Of
26 High Pressure Structures
pdb|3DQJ|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 3: Structure 7 In A Series Of
26 High Pressure Structures
pdb|3DQK|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 2: Structure 6 In A Series Of
26 High Pressure Structures
pdb|3DQL|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 1: Structure 5 In A Series Of
26 High Pressure Structures
pdb|3DQM|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 750 Atmospheres: Structure 4 In A Series Of 26 High
Pressure Structures
pdb|3DQN|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 500 Atmospheres: Structure 3 In A Series Of 26 High
Pressure Structures
pdb|3DQO|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1 Atmosphere Number 2: Structure 2 In A Series Of 26
High Pressure Structures
pdb|3DQU|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 2000 Atmospheres Number 1: Structure 20 In A Series
Of 26 High Pressure Structures
Length = 241
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 82 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 141
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 142 HKLEYNYNSHNVYIMADKQKN 162
>pdb|1EMC|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMC|B Chain B, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMC|C Chain C, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMC|D Chain D, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EME|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMK|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EML|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
Length = 237
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 78 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 138 HKLEYNYNSHNVYIMADKQKN 158
>pdb|1EMB| Chain , Green Fluorescent Protein (Gfp) From Aequorea Victoria,
Gln 80 Replaced With Arg
pdb|1EMG|A Chain A, Green Fluorescent Protein (65-67 Replaced By Cro, S65t
Substitution, Q80r)
pdb|1C4F|A Chain A, Green Fluorescent Protein S65t At Ph 4.6
pdb|1HCJ|A Chain A, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1HCJ|B Chain B, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1HCJ|C Chain C, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1HCJ|D Chain D, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1Q4A|A Chain A, S65t Q80r Green Fluorescent Protein (Gfp) Ph 8.5
pdb|1Q4B|A Chain A, S65t Q80r Green Fluorescent Protein (Gfp) Ph 5.5
pdb|1W7S|A Chain A, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7S|B Chain B, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7S|C Chain C, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7S|D Chain D, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7T|A Chain A, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7T|B Chain B, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7T|C Chain C, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7T|D Chain D, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7U|A Chain A, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1W7U|B Chain B, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1W7U|C Chain C, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1W7U|D Chain D, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1EMB|A Chain A, Green Fluorescent Protein (Gfp) From Aequorea Victoria,
Gln 80 Replaced With Arg
Length = 236
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|3COU|A Chain A, Crystal Structure Of Human Nudix Motif 16 (Nudt16)
pdb|2XSQ|A Chain A, Crystal Structure Of Human Nudix Motif 16 (Nudt16) In
Complex With Imp And Magnesium
Length = 217
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 203 DGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ-EMEKYDWRAA 251
DG++G+ PG D + N+ELRE +G+AA +E+ D+R++
Sbjct: 74 DGRLGF---PGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSS 120
>pdb|2QLE|A Chain A, GfpS205V MUTANT
pdb|2QLE|B Chain B, GfpS205V MUTANT
pdb|2QLE|C Chain C, GfpS205V MUTANT
pdb|2QLE|D Chain D, GfpS205V MUTANT
Length = 236
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|1Q4C|A Chain A, S65t Q80r T203c Green Fluorescent Protein (Gfp) Ph 8.5
pdb|1Q4D|A Chain A, S65t Q80r T203c Green Fluorescent Protein (Gfp) Ph 5.5
Length = 236
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|1S6Z|A Chain A, Enhanced Green Fluorescent Protein Containing The Y66l
Substitution
pdb|1Z1P|A Chain A, Y66l Variant Of Enhanced Green Fluorescent Protein With
412- Nm Absorbing Chromophore
pdb|1Z1Q|A Chain A, Y66l Variant Of Enhanced Green Fluorescent Protein With
374- Nm Absorbing Chromophore
Length = 236
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|3MGM|A Chain A, Crystal Structure Of Human Nudt16
pdb|3MGM|B Chain B, Crystal Structure Of Human Nudt16
Length = 200
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 203 DGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ-EMEKYDWRAA 251
DG++G+ PG D + N+ELRE +G+AA +E+ D+R++
Sbjct: 53 DGRLGF---PGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSS 99
>pdb|1HUY|A Chain A, Crystal Structure Of Citrine, An Improved Yellow Variant
Of Green Fluorescent Protein
Length = 239
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|1F09|A Chain A, Crystal Structure Of The Green Fluorescent Protein (Gfp)
Variant Yfp-H148q With Two Bound Iodides
pdb|1F0B|A Chain A, Crystal Structure Of The Green Fluorescent Protein (Gfp)
Variant Yfp-H148q
Length = 236
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 104 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 150
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 151 EELSQAYASGDVFVMPSESET 171
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSQNVYIMADKQKN 157
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 129 YREELEKMFTGMPAVFTGMLLGEELSQA 156
Y+E + + F MPA F GML G+ L +
Sbjct: 297 YKEYIIEGFENMPAAFMGMLKGDNLGKT 324
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 129 YREELEKMFTGMPAVFTGMLLGEELSQA 156
Y+E + + F MPA F GML G+ L +
Sbjct: 318 YKEYIIEGFENMPAAFMGMLKGDNLGKT 345
>pdb|1A4S|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
Length = 503
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 147 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKI 206
+++G+ L G + P + LG V +A G V+ GG P + P D K
Sbjct: 324 IVVGDPLLTETRMGGLISKPQLDKVLGFVA-QAKKEGARVL---CGGEP-LTPSDPKLKN 378
Query: 207 GYLFNPGDLDDC 218
GY +P LD+C
Sbjct: 379 GYFMSPCVLDNC 390
>pdb|1L9G|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From T.
Maritima
Length = 192
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 118 EARIAFIGDGPYREELEKMFTGMPAVF-TGMLLGEELSQA 156
+ RI F+G+GP EE + TG P V GMLL E L ++
Sbjct: 38 DTRIVFVGEGPGEEEDK---TGRPFVGRAGMLLTELLRES 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,173,573
Number of Sequences: 62578
Number of extensions: 387370
Number of successful extensions: 988
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 85
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)