Query 022615
Match_columns 294
No_of_seqs 293 out of 1162
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 04:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02871 UDP-sulfoquinovose:DA 100.0 6.9E-45 1.5E-49 318.9 29.0 288 2-292 174-464 (465)
2 PRK15427 colanic acid biosynth 100.0 4.8E-37 1E-41 264.1 23.7 224 25-262 166-405 (406)
3 TIGR03088 stp2 sugar transfera 100.0 7.7E-36 1.7E-40 255.7 25.1 234 24-263 127-373 (374)
4 TIGR03449 mycothiol_MshA UDP-N 100.0 3.7E-35 8.1E-40 254.0 26.3 236 23-264 153-403 (405)
5 PRK10307 putative glycosyl tra 100.0 4.4E-35 9.5E-40 253.9 24.8 238 20-265 158-410 (412)
6 TIGR02149 glgA_Coryne glycogen 100.0 3.3E-34 7.1E-39 246.8 24.3 236 22-263 133-387 (388)
7 cd05844 GT1_like_7 Glycosyltra 100.0 5E-34 1.1E-38 243.9 22.9 219 23-256 132-365 (367)
8 cd03818 GT1_ExpC_like This fam 100.0 5.2E-34 1.1E-38 245.9 22.9 224 27-256 150-395 (396)
9 PRK15484 lipopolysaccharide 1, 100.0 1.1E-33 2.5E-38 241.8 24.4 229 26-263 132-378 (380)
10 cd03813 GT1_like_3 This family 100.0 2.7E-34 5.9E-39 252.2 20.7 224 22-261 233-475 (475)
11 PLN02949 transferase, transfer 100.0 9.4E-34 2E-38 245.3 22.6 228 26-266 213-460 (463)
12 cd03814 GT1_like_2 This family 100.0 2E-33 4.3E-38 239.3 23.7 247 3-260 114-363 (364)
13 TIGR02472 sucr_P_syn_N sucrose 100.0 1.7E-33 3.8E-38 245.0 23.4 229 26-257 177-436 (439)
14 cd03805 GT1_ALG2_like This fam 100.0 7E-34 1.5E-38 245.1 20.5 227 23-255 144-392 (392)
15 cd03796 GT1_PIG-A_like This fa 100.0 1.8E-33 4E-38 242.6 22.9 227 24-265 135-370 (398)
16 PRK00654 glgA glycogen synthas 100.0 2.3E-33 5E-38 245.7 23.7 234 25-265 189-465 (466)
17 cd04962 GT1_like_5 This family 100.0 1E-32 2.2E-37 236.1 25.0 231 23-262 132-370 (371)
18 PLN02939 transferase, transfer 100.0 2.2E-32 4.7E-37 245.9 27.1 240 25-267 685-971 (977)
19 TIGR02468 sucrsPsyn_pln sucros 100.0 7.3E-33 1.6E-37 252.3 24.3 235 25-265 373-673 (1050)
20 PRK14099 glycogen synthase; Pr 100.0 1.2E-32 2.6E-37 240.7 24.7 233 26-266 202-482 (485)
21 cd03800 GT1_Sucrose_synthase T 100.0 1.3E-32 2.9E-37 237.5 24.8 229 24-256 154-397 (398)
22 PHA01630 putative group 1 glyc 100.0 9.8E-33 2.1E-37 229.9 22.9 222 22-262 82-330 (331)
23 TIGR02918 accessory Sec system 100.0 7.5E-33 1.6E-37 241.9 22.9 212 31-262 268-499 (500)
24 PRK14098 glycogen synthase; Pr 100.0 9E-33 2E-37 241.7 23.4 237 25-264 212-487 (489)
25 cd03809 GT1_mtfB_like This fam 100.0 4.1E-33 8.9E-38 237.5 20.8 246 3-256 110-364 (365)
26 cd04946 GT1_AmsK_like This fam 100.0 1.3E-32 2.7E-37 237.3 23.9 219 24-256 174-406 (407)
27 cd04955 GT1_like_6 This family 100.0 2.7E-32 5.8E-37 232.7 24.8 226 20-261 130-363 (363)
28 cd03795 GT1_like_4 This family 100.0 2E-32 4.4E-37 232.9 23.1 227 19-252 123-357 (357)
29 TIGR03087 stp1 sugar transfera 100.0 4.7E-32 1E-36 233.7 25.4 223 24-261 163-395 (397)
30 TIGR02095 glgA glycogen/starch 100.0 1.9E-32 4.2E-37 240.9 22.6 232 25-262 197-472 (473)
31 cd03799 GT1_amsK_like This is 100.0 3.8E-32 8.2E-37 231.1 22.6 219 25-255 122-355 (355)
32 PRK15490 Vi polysaccharide bio 100.0 5.7E-32 1.2E-36 232.0 23.0 223 33-262 339-575 (578)
33 PRK15179 Vi polysaccharide bio 100.0 3.1E-32 6.6E-37 243.7 21.9 223 33-261 458-692 (694)
34 cd03801 GT1_YqgM_like This fam 100.0 1.2E-31 2.7E-36 227.8 24.2 234 20-260 131-373 (374)
35 PLN02316 synthase/transferase 100.0 2.2E-31 4.7E-36 243.4 26.6 235 26-264 754-1035(1036)
36 cd03804 GT1_wbaZ_like This fam 100.0 6.8E-32 1.5E-36 229.3 21.7 209 22-255 142-350 (351)
37 cd03816 GT1_ALG1_like This fam 100.0 8.2E-32 1.8E-36 232.8 21.5 229 20-256 147-411 (415)
38 cd03807 GT1_WbnK_like This fam 100.0 5E-31 1.1E-35 224.1 22.8 235 18-261 121-365 (365)
39 cd03798 GT1_wlbH_like This fam 100.0 6E-31 1.3E-35 224.2 23.1 231 22-262 137-376 (377)
40 cd04949 GT1_gtfA_like This fam 100.0 2.7E-31 5.9E-36 227.4 20.7 210 30-255 154-372 (372)
41 cd03806 GT1_ALG11_like This fa 100.0 9.3E-32 2E-36 232.3 17.7 214 25-253 181-418 (419)
42 cd03792 GT1_Trehalose_phosphor 100.0 1.6E-30 3.5E-35 222.5 24.0 226 24-262 126-371 (372)
43 cd04951 GT1_WbdM_like This fam 100.0 2.2E-30 4.8E-35 220.6 24.3 229 24-261 121-359 (360)
44 cd03794 GT1_wbuB_like This fam 100.0 1E-30 2.3E-35 224.1 22.2 229 21-255 153-393 (394)
45 TIGR02470 sucr_synth sucrose s 100.0 5.6E-30 1.2E-34 229.2 26.7 236 27-267 446-751 (784)
46 PLN02501 digalactosyldiacylgly 100.0 1.2E-30 2.7E-35 226.5 21.1 233 2-257 465-705 (794)
47 PRK09922 UDP-D-galactose:(gluc 100.0 1.5E-30 3.2E-35 221.5 20.8 217 31-264 131-357 (359)
48 cd03819 GT1_WavL_like This fam 100.0 2E-30 4.4E-35 220.5 21.6 220 26-250 117-354 (355)
49 cd03822 GT1_ecORF704_like This 100.0 4.3E-30 9.3E-35 219.0 23.7 226 22-260 123-365 (366)
50 cd03808 GT1_cap1E_like This fa 100.0 4.4E-30 9.5E-35 217.7 23.0 222 21-256 126-358 (359)
51 cd03791 GT1_Glycogen_synthase_ 100.0 3.4E-30 7.4E-35 227.4 22.7 231 25-261 202-475 (476)
52 cd03812 GT1_CapH_like This fam 100.0 2E-30 4.3E-35 220.9 20.1 211 24-243 128-346 (358)
53 cd03825 GT1_wcfI_like This fam 100.0 1.3E-29 2.8E-34 216.3 24.4 222 32-262 134-364 (365)
54 cd03821 GT1_Bme6_like This fam 100.0 8.2E-30 1.8E-34 217.4 23.1 223 25-256 141-374 (375)
55 cd03820 GT1_amsD_like This fam 100.0 9.2E-30 2E-34 214.8 21.8 211 26-256 128-347 (348)
56 PLN02846 digalactosyldiacylgly 100.0 8.9E-30 1.9E-34 217.6 21.4 235 2-263 147-392 (462)
57 cd03817 GT1_UGDG_like This fam 100.0 1.9E-29 4E-34 215.3 23.5 225 25-261 140-372 (374)
58 PHA01633 putative glycosyl tra 100.0 4.1E-29 8.8E-34 205.9 23.4 224 24-256 84-334 (335)
59 PRK10125 putative glycosyl tra 100.0 3E-29 6.5E-34 215.2 23.3 212 27-262 184-404 (405)
60 PLN00142 sucrose synthase 100.0 5.6E-29 1.2E-33 222.8 23.6 229 26-257 468-766 (815)
61 cd03811 GT1_WabH_like This fam 100.0 3.9E-29 8.4E-34 211.3 20.0 214 25-247 127-352 (353)
62 cd03823 GT1_ExpE7_like This fa 100.0 1.2E-28 2.6E-33 209.3 21.5 213 32-261 142-358 (359)
63 cd03802 GT1_AviGT4_like This f 100.0 9.7E-28 2.1E-32 202.5 21.7 203 28-261 126-335 (335)
64 cd04950 GT1_like_1 Glycosyltra 100.0 5.2E-28 1.1E-32 206.6 19.6 221 24-259 144-369 (373)
65 PLN02275 transferase, transfer 100.0 3.3E-28 7.1E-33 207.6 18.2 193 19-226 151-371 (371)
66 KOG1111 N-acetylglucosaminyltr 100.0 2.6E-28 5.7E-33 194.0 14.2 225 25-266 137-370 (426)
67 cd03788 GT1_TPS Trehalose-6-Ph 99.9 2.7E-26 5.9E-31 199.9 15.5 228 25-259 180-459 (460)
68 TIGR02400 trehalose_OtsA alpha 99.9 3E-25 6.6E-30 191.9 18.7 223 31-259 181-454 (456)
69 PF00534 Glycos_transf_1: Glyc 99.9 1.8E-25 3.8E-30 170.7 14.8 153 87-242 11-172 (172)
70 cd03793 GT1_Glycogen_synthase_ 99.9 4.7E-24 1E-28 183.6 19.8 237 25-265 218-589 (590)
71 PLN03063 alpha,alpha-trehalose 99.9 3.1E-24 6.7E-29 196.5 14.3 226 33-264 203-479 (797)
72 PLN02605 monogalactosyldiacylg 99.9 3.3E-23 7.1E-28 177.6 19.3 218 26-257 143-377 (382)
73 PRK05749 3-deoxy-D-manno-octul 99.9 3.6E-23 7.9E-28 180.0 19.7 226 23-262 168-419 (425)
74 PRK09814 beta-1,6-galactofuran 99.9 2.8E-22 6.2E-27 168.5 18.0 200 24-254 114-324 (333)
75 PRK13609 diacylglycerol glucos 99.9 4.5E-22 9.7E-27 170.8 19.1 221 27-261 141-370 (380)
76 PRK13608 diacylglycerol glucos 99.9 6.9E-22 1.5E-26 169.7 19.0 221 28-262 142-371 (391)
77 PRK14501 putative bifunctional 99.9 6.1E-22 1.3E-26 181.7 15.0 226 32-265 188-465 (726)
78 cd03785 GT1_MurG MurG is an N- 99.9 8.5E-21 1.8E-25 161.3 16.9 208 25-253 126-349 (350)
79 PRK00726 murG undecaprenyldiph 99.9 1.4E-20 3.1E-25 160.2 18.3 213 25-257 128-353 (357)
80 KOG0853 Glycosyltransferase [C 99.8 1.3E-19 2.8E-24 153.4 17.8 237 20-261 196-466 (495)
81 COG0438 RfaG Glycosyltransfera 99.8 1.2E-18 2.5E-23 147.2 23.7 218 33-264 150-378 (381)
82 COG0297 GlgA Glycogen synthase 99.8 1E-18 2.2E-23 150.1 21.0 239 25-266 200-481 (487)
83 TIGR02398 gluc_glyc_Psyn gluco 99.8 4.5E-19 9.7E-24 152.9 18.2 224 33-262 188-483 (487)
84 TIGR01133 murG undecaprenyldip 99.8 2.7E-19 5.8E-24 151.9 16.2 206 25-253 127-346 (348)
85 KOG1387 Glycosyltransferase [C 99.8 2.5E-18 5.4E-23 136.7 18.1 219 25-257 214-454 (465)
86 PF13692 Glyco_trans_1_4: Glyc 99.8 1.4E-19 3.1E-24 132.3 10.0 127 92-228 3-135 (135)
87 TIGR03713 acc_sec_asp1 accesso 99.8 3E-17 6.5E-22 144.0 19.0 205 30-257 269-517 (519)
88 KOG2941 Beta-1,4-mannosyltrans 99.8 5.2E-17 1.1E-21 129.4 17.3 232 17-256 153-436 (444)
89 PLN03064 alpha,alpha-trehalose 99.8 5.1E-17 1.1E-21 149.0 18.8 226 33-263 287-563 (934)
90 TIGR00236 wecB UDP-N-acetylglu 99.8 1.7E-17 3.7E-22 141.7 13.4 216 27-256 134-362 (365)
91 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 5.7E-17 1.2E-21 138.5 13.8 199 26-236 134-345 (363)
92 PRK00025 lpxB lipid-A-disaccha 99.7 2.1E-15 4.5E-20 129.7 17.7 200 28-245 129-358 (380)
93 cd01635 Glycosyltransferase_GT 99.7 1.7E-15 3.7E-20 120.4 16.0 169 32-210 50-229 (229)
94 TIGR02919 accessory Sec system 99.7 2E-14 4.2E-19 123.5 19.1 193 32-249 238-432 (438)
95 TIGR02094 more_P_ylases alpha- 99.6 9.8E-14 2.1E-18 123.5 21.2 232 25-260 254-599 (601)
96 PF13524 Glyco_trans_1_2: Glyc 99.6 6.7E-15 1.4E-19 99.8 9.1 90 162-256 1-91 (92)
97 PF05693 Glycogen_syn: Glycoge 99.5 1.7E-12 3.7E-17 112.3 18.4 240 24-266 212-585 (633)
98 cd04299 GT1_Glycogen_Phosphory 99.5 3.3E-11 7.1E-16 109.7 23.6 242 25-270 343-698 (778)
99 PRK10117 trehalose-6-phosphate 99.4 5.1E-12 1.1E-16 108.5 16.4 222 33-260 179-452 (474)
100 TIGR00215 lpxB lipid-A-disacch 99.4 2.4E-11 5.2E-16 104.2 17.0 205 27-246 132-369 (385)
101 PF00982 Glyco_transf_20: Glyc 99.4 1.1E-11 2.4E-16 107.6 12.9 222 33-259 197-472 (474)
102 COG0380 OtsA Trehalose-6-phosp 99.3 1.5E-10 3.2E-15 99.2 17.4 224 32-261 202-479 (486)
103 PLN02205 alpha,alpha-trehalose 99.3 2.4E-10 5.2E-15 105.9 16.3 225 32-262 256-552 (854)
104 COG1519 KdtA 3-deoxy-D-manno-o 99.2 2E-09 4.3E-14 89.7 18.0 213 21-245 165-403 (419)
105 COG0707 MurG UDP-N-acetylgluco 99.2 2.1E-09 4.5E-14 90.3 18.0 211 25-256 128-352 (357)
106 TIGR03492 conserved hypothetic 99.1 8.3E-09 1.8E-13 88.7 18.3 208 27-256 154-393 (396)
107 COG4641 Uncharacterized protei 98.9 2.3E-08 4.9E-13 82.1 12.5 208 33-259 138-359 (373)
108 TIGR03568 NeuC_NnaA UDP-N-acet 98.9 1.8E-07 3.9E-12 79.7 16.3 212 27-256 138-362 (365)
109 PRK12446 undecaprenyldiphospho 98.8 6.1E-07 1.3E-11 76.1 17.3 191 25-232 128-329 (352)
110 PF04464 Glyphos_transf: CDP-G 98.8 3.2E-07 6.9E-12 78.7 15.2 222 26-259 127-367 (369)
111 PF13844 Glyco_transf_41: Glyc 98.8 6E-07 1.3E-11 77.4 15.7 172 88-263 282-467 (468)
112 TIGR03590 PseG pseudaminic aci 98.7 3.7E-07 8E-12 74.9 12.8 95 91-192 171-269 (279)
113 PF02684 LpxB: Lipid-A-disacch 98.7 7.5E-07 1.6E-11 75.2 14.5 209 9-234 113-346 (373)
114 TIGR01426 MGT glycosyltransfer 98.7 8.4E-07 1.8E-11 76.7 15.0 155 90-256 225-387 (392)
115 COG0763 LpxB Lipid A disacchar 98.6 1.4E-06 3E-11 72.3 13.6 206 27-242 130-358 (381)
116 PF02350 Epimerase_2: UDP-N-ac 98.6 5.1E-07 1.1E-11 76.2 10.9 198 25-234 114-324 (346)
117 PRK02797 4-alpha-L-fucosyltran 98.6 2.8E-06 6E-11 68.5 14.0 220 15-263 80-317 (322)
118 cd03784 GT1_Gtf_like This fami 98.5 3.7E-06 8E-11 73.0 13.7 138 89-241 238-384 (401)
119 PRK01021 lpxB lipid-A-disaccha 98.5 2.5E-05 5.3E-10 69.4 17.7 217 9-244 341-587 (608)
120 COG3914 Spy Predicted O-linked 98.4 2.7E-05 5.9E-10 67.6 16.4 175 88-266 427-617 (620)
121 PF07429 Glyco_transf_56: 4-al 98.4 5.1E-05 1.1E-09 62.3 16.4 172 15-198 119-304 (360)
122 COG0381 WecB UDP-N-acetylgluco 98.3 4.2E-05 9.1E-10 63.8 15.2 218 26-255 138-368 (383)
123 PHA03392 egt ecdysteroid UDP-g 98.2 5.4E-05 1.2E-09 67.4 15.3 151 91-256 297-461 (507)
124 PF13528 Glyco_trans_1_3: Glyc 98.2 1.8E-05 4E-10 66.4 10.4 121 90-225 192-317 (318)
125 COG1819 Glycosyl transferases, 98.2 8.1E-05 1.8E-09 64.4 14.0 152 90-255 237-395 (406)
126 PF04101 Glyco_tran_28_C: Glyc 98.1 4.8E-07 1E-11 68.4 0.2 111 119-238 32-154 (167)
127 TIGR00661 MJ1255 conserved hyp 98.1 4.5E-05 9.8E-10 64.1 11.6 121 91-229 189-315 (321)
128 KOG3742 Glycogen synthase [Car 98.1 5.1E-05 1.1E-09 63.9 10.8 229 25-256 244-607 (692)
129 PLN02670 transferase, transfer 98.0 0.0002 4.2E-09 63.0 14.2 164 89-262 277-466 (472)
130 PF13439 Glyco_transf_4: Glyco 98.0 1.7E-06 3.8E-11 65.6 1.4 48 23-71 129-176 (177)
131 PRK10017 colanic acid biosynth 97.8 0.014 3E-07 50.9 21.7 213 12-235 155-399 (426)
132 PLN03004 UDP-glycosyltransfera 97.8 0.00043 9.4E-09 60.5 12.5 134 89-230 269-426 (451)
133 PF00201 UDPGT: UDP-glucoronos 97.8 0.00013 2.7E-09 65.4 9.1 131 89-233 275-414 (500)
134 PLN02448 UDP-glycosyltransfera 97.8 0.0046 9.9E-08 54.7 18.4 141 90-241 274-429 (459)
135 PLN02562 UDP-glycosyltransfera 97.7 0.0016 3.5E-08 57.2 14.6 135 90-234 273-419 (448)
136 PLN02208 glycosyltransferase f 97.7 0.0077 1.7E-07 52.8 18.6 204 30-242 190-416 (442)
137 PLN03007 UDP-glucosyltransfera 97.7 0.0034 7.4E-08 55.8 16.2 134 89-229 284-441 (482)
138 PLN02210 UDP-glucosyl transfer 97.7 0.0017 3.7E-08 57.2 13.9 158 90-256 269-450 (456)
139 PF13579 Glyco_trans_4_4: Glyc 97.6 5.7E-05 1.2E-09 56.1 3.4 48 17-65 113-160 (160)
140 PLN00164 glucosyltransferase; 97.6 0.02 4.2E-07 50.9 19.7 144 90-241 272-445 (480)
141 PLN02992 coniferyl-alcohol glu 97.6 0.027 5.8E-07 49.9 19.7 134 89-229 262-428 (481)
142 PF04007 DUF354: Protein of un 97.6 0.0026 5.6E-08 53.3 12.8 180 27-226 119-308 (335)
143 COG0058 GlgP Glucan phosphoryl 97.5 0.0023 4.9E-08 58.4 12.9 123 89-212 485-630 (750)
144 COG1817 Uncharacterized protei 97.5 0.0028 6.1E-08 51.3 11.8 189 26-230 119-316 (346)
145 PRK14089 ipid-A-disaccharide s 97.5 0.0021 4.5E-08 54.3 11.5 149 9-189 107-260 (347)
146 COG3980 spsG Spore coat polysa 97.5 0.0015 3.2E-08 52.2 9.4 138 90-240 158-305 (318)
147 PLN02173 UDP-glucosyl transfer 97.4 0.0061 1.3E-07 53.5 14.2 143 89-241 263-420 (449)
148 PLN02863 UDP-glucoronosyl/UDP- 97.4 0.0096 2.1E-07 52.8 15.4 163 90-259 283-469 (477)
149 PLN02207 UDP-glycosyltransfera 97.4 0.039 8.5E-07 48.7 18.3 131 89-227 274-425 (468)
150 PLN02152 indole-3-acetate beta 97.4 0.0079 1.7E-07 52.8 13.9 132 90-230 261-419 (455)
151 PLN02764 glycosyltransferase f 97.3 0.0061 1.3E-07 53.4 12.9 164 87-257 254-441 (453)
152 PLN02410 UDP-glucoronosyl/UDP- 97.3 0.0031 6.8E-08 55.4 11.2 133 89-230 263-412 (451)
153 PLN02554 UDP-glycosyltransfera 97.3 0.039 8.5E-07 49.1 18.1 131 90-230 274-443 (481)
154 PLN03015 UDP-glucosyl transfer 97.2 0.077 1.7E-06 46.9 18.0 133 88-227 265-425 (470)
155 PLN02167 UDP-glycosyltransfera 97.1 0.027 5.8E-07 50.1 14.3 158 90-257 280-468 (475)
156 PLN00414 glycosyltransferase f 97.0 0.015 3.4E-07 51.0 12.3 149 87-243 249-418 (446)
157 PLN02534 UDP-glycosyltransfera 96.8 0.079 1.7E-06 47.2 15.1 132 89-227 282-443 (491)
158 COG1887 TagB Putative glycosyl 96.8 0.13 2.9E-06 44.3 15.9 222 30-260 145-385 (388)
159 cd03789 GT1_LPS_heptosyltransf 96.8 0.081 1.8E-06 43.5 14.1 140 31-190 77-224 (279)
160 PF15024 Glyco_transf_18: Glyc 96.7 0.0085 1.8E-07 52.8 8.2 152 93-261 279-454 (559)
161 PRK14986 glycogen phosphorylas 96.7 0.012 2.6E-07 54.6 8.9 122 87-211 539-694 (815)
162 PF05159 Capsule_synth: Capsul 96.6 0.053 1.2E-06 44.3 11.8 97 89-192 115-227 (269)
163 PF00343 Phosphorylase: Carboh 96.6 0.014 3.1E-07 53.3 8.9 123 88-211 441-595 (713)
164 TIGR02195 heptsyl_trn_II lipop 96.6 0.02 4.4E-07 48.4 9.5 95 90-189 174-276 (334)
165 PF01075 Glyco_transf_9: Glyco 96.6 0.018 4E-07 46.3 8.8 96 89-189 104-208 (247)
166 PLN02555 limonoid glucosyltran 96.5 0.12 2.5E-06 46.0 14.1 141 90-241 277-441 (480)
167 KOG1050 Trehalose-6-phosphate 96.5 0.089 1.9E-06 48.8 13.5 169 58-231 240-443 (732)
168 TIGR02193 heptsyl_trn_I lipopo 96.4 0.086 1.9E-06 44.3 12.3 95 90-189 179-279 (319)
169 cd04300 GT1_Glycogen_Phosphory 96.4 0.019 4E-07 53.4 8.4 123 88-211 527-681 (797)
170 PRK14985 maltodextrin phosphor 96.3 0.012 2.5E-07 54.4 6.5 121 88-211 526-680 (798)
171 PF09314 DUF1972: Domain of un 96.2 0.0079 1.7E-07 45.7 4.2 47 19-67 139-185 (185)
172 PRK10964 ADP-heptose:LPS hepto 96.2 0.16 3.5E-06 42.7 12.5 94 91-189 179-278 (322)
173 PF11440 AGT: DNA alpha-glucos 96.0 0.52 1.1E-05 38.0 13.7 194 29-229 116-354 (355)
174 TIGR02093 P_ylase glycogen/sta 96.0 0.022 4.8E-07 52.7 6.8 123 88-211 524-678 (794)
175 KOG1192 UDP-glucuronosyl and U 95.9 0.13 2.8E-06 46.1 11.6 144 91-240 278-434 (496)
176 PRK10422 lipopolysaccharide co 95.7 0.28 6.2E-06 41.8 12.3 97 89-190 182-288 (352)
177 KOG4626 O-linked N-acetylgluco 95.7 0.1 2.2E-06 46.7 9.3 176 88-267 756-945 (966)
178 PRK10916 ADP-heptose:LPS hepto 95.6 0.11 2.4E-06 44.3 9.4 96 89-189 179-286 (348)
179 COG0859 RfaF ADP-heptose:LPS h 95.6 0.097 2.1E-06 44.3 8.9 95 91-190 176-277 (334)
180 PF06258 Mito_fiss_Elm1: Mitoc 95.6 0.39 8.5E-06 40.1 12.2 73 118-193 182-259 (311)
181 PF03016 Exostosin: Exostosin 95.4 0.02 4.4E-07 47.6 4.1 70 151-223 228-300 (302)
182 TIGR03609 S_layer_CsaB polysac 95.1 1.6 3.5E-05 36.2 16.1 151 21-189 115-275 (298)
183 TIGR02201 heptsyl_trn_III lipo 95.0 0.25 5.3E-06 42.0 9.6 95 90-189 181-285 (344)
184 COG4671 Predicted glycosyl tra 94.9 0.82 1.8E-05 38.3 11.7 192 25-228 159-365 (400)
185 PF04230 PS_pyruv_trans: Polys 94.4 2.2 4.7E-05 34.5 13.8 158 19-191 113-284 (286)
186 PF01113 DapB_N: Dihydrodipico 93.9 0.077 1.7E-06 37.7 3.5 46 150-195 58-103 (124)
187 PF10087 DUF2325: Uncharacteri 93.8 0.21 4.5E-06 33.8 5.3 77 121-197 2-89 (97)
188 COG3660 Predicted nucleoside-d 92.9 4.2 9E-05 32.8 12.4 38 151-191 236-273 (329)
189 KOG3349 Predicted glycosyltran 91.3 2.7 6E-05 30.6 8.3 90 92-189 5-106 (170)
190 TIGR03646 YtoQ_fam YtoQ family 90.8 2 4.2E-05 30.4 7.0 71 153-226 69-143 (144)
191 PF00852 Glyco_transf_10: Glyc 90.6 1.8 3.9E-05 36.9 8.3 101 131-234 193-304 (349)
192 PF11071 DUF2872: Protein of u 90.5 1.6 3.5E-05 30.8 6.3 71 153-226 66-140 (141)
193 KOG1021 Acetylglucosaminyltran 89.6 1.9 4E-05 38.4 7.8 85 151-241 335-424 (464)
194 COG0373 HemA Glutamyl-tRNA red 89.2 14 0.00031 32.2 16.6 74 147-220 226-302 (414)
195 PF12996 DUF3880: DUF based on 89.1 0.78 1.7E-05 29.6 3.9 65 28-101 13-77 (79)
196 PF10933 DUF2827: Protein of u 89.1 10 0.00023 32.1 11.1 200 34-249 130-351 (364)
197 KOG2264 Exostosin EXT1L [Signa 86.0 6 0.00013 35.4 8.4 125 142-279 401-534 (907)
198 PRK06718 precorrin-2 dehydroge 84.5 17 0.00037 28.3 11.9 77 118-198 33-109 (202)
199 KOG2619 Fucosyltransferase [Ca 83.2 17 0.00038 31.1 9.8 83 149-236 240-327 (372)
200 PF10093 DUF2331: Uncharacteri 83.1 10 0.00022 32.5 8.4 92 89-188 182-287 (374)
201 COG4394 Uncharacterized protei 81.7 16 0.00034 30.0 8.5 80 105-189 190-282 (370)
202 PRK00676 hemA glutamyl-tRNA re 80.8 34 0.00074 29.1 13.0 136 115-263 171-319 (338)
203 PF05686 Glyco_transf_90: Glyc 80.5 11 0.00025 32.7 8.1 87 171-261 225-316 (395)
204 PF12000 Glyco_trans_4_3: Gkyc 79.8 1.5 3.2E-05 33.1 2.2 43 26-71 128-170 (171)
205 PRK00048 dihydrodipicolinate r 79.5 6.8 0.00015 31.8 6.1 43 150-192 51-93 (257)
206 PRK00994 F420-dependent methyl 79.3 30 0.00065 27.5 10.6 101 94-214 7-118 (277)
207 COG2327 WcaK Polysaccharide py 78.1 45 0.00097 28.9 15.4 200 14-230 133-352 (385)
208 PRK05447 1-deoxy-D-xylulose 5- 77.4 22 0.00049 30.7 8.7 84 103-190 36-122 (385)
209 PF04413 Glycos_transf_N: 3-De 77.1 3.8 8.2E-05 31.4 3.8 41 23-64 139-179 (186)
210 smart00672 CAP10 Putative lipo 76.5 40 0.00086 27.4 9.8 83 171-256 156-243 (256)
211 PRK13940 glutamyl-tRNA reducta 76.1 54 0.0012 28.8 12.9 47 149-197 232-278 (414)
212 TIGR03837 efp_adjacent_2 conse 75.8 20 0.00044 30.6 7.9 79 105-188 194-285 (371)
213 PF01408 GFO_IDH_MocA: Oxidore 75.7 23 0.00051 24.4 7.8 75 109-190 15-93 (120)
214 TIGR00075 hypD hydrogenase exp 74.3 9.2 0.0002 32.5 5.5 134 107-262 125-275 (369)
215 PF12738 PTCB-BRCT: twin BRCT 73.9 13 0.00028 22.4 5.0 59 121-190 3-62 (63)
216 PF06925 MGDG_synth: Monogalac 73.1 3 6.4E-05 31.4 2.3 36 28-64 132-167 (169)
217 COG1618 Predicted nucleotide k 72.9 8.8 0.00019 28.7 4.5 74 151-228 92-177 (179)
218 PRK05583 ribosomal protein L7A 72.5 28 0.00061 23.8 7.0 75 105-180 21-98 (104)
219 COG3563 KpsC Capsule polysacch 71.3 28 0.00061 30.9 7.8 83 104-193 167-254 (671)
220 PF13241 NAD_binding_7: Putati 71.0 9.5 0.00021 25.9 4.2 70 118-198 30-100 (103)
221 TIGR00036 dapB dihydrodipicoli 70.2 16 0.00035 29.9 6.1 42 151-192 60-101 (266)
222 cd01020 TroA_b Metal binding p 70.2 47 0.001 27.0 8.9 92 149-245 42-136 (264)
223 PRK05472 redox-sensing transcr 69.9 51 0.0011 25.8 10.7 89 102-190 64-177 (213)
224 COG0673 MviM Predicted dehydro 69.3 32 0.00069 29.0 8.0 91 92-189 4-97 (342)
225 PRK04207 glyceraldehyde-3-phos 68.6 23 0.0005 30.2 6.9 40 152-191 71-110 (341)
226 COG4370 Uncharacterized protei 68.4 10 0.00023 31.3 4.4 206 30-255 175-407 (412)
227 PRK15062 hydrogenase isoenzyme 68.3 15 0.00033 31.2 5.5 136 106-263 118-270 (364)
228 cd00027 BRCT Breast Cancer Sup 68.1 23 0.0005 21.1 5.5 62 119-190 2-65 (72)
229 PRK05562 precorrin-2 dehydroge 66.8 63 0.0014 25.7 12.3 122 118-243 48-177 (223)
230 COG4565 CitB Response regulato 66.7 57 0.0012 25.6 7.9 77 151-230 36-122 (224)
231 PF10649 DUF2478: Protein of u 66.1 13 0.00028 27.7 4.2 38 153-190 86-130 (159)
232 TIGR02536 eut_hyp ethanolamine 66.0 35 0.00076 26.7 6.8 64 120-192 23-99 (207)
233 TIGR01761 thiaz-red thiazoliny 64.5 62 0.0013 27.6 8.6 91 90-190 2-97 (343)
234 cd01080 NAD_bind_m-THF_DH_Cycl 64.1 34 0.00073 25.8 6.3 61 108-169 30-97 (168)
235 PF01924 HypD: Hydrogenase for 60.9 14 0.00031 31.2 4.1 152 88-261 75-263 (355)
236 COG2204 AtoC Response regulato 60.4 78 0.0017 28.3 8.6 111 121-231 7-125 (464)
237 PF04392 ABC_sub_bind: ABC tra 59.6 1E+02 0.0022 25.5 10.5 144 31-190 57-218 (294)
238 KOG2884 26S proteasome regulat 59.4 86 0.0019 24.7 9.5 53 176-229 178-230 (259)
239 PF01297 TroA: Periplasmic sol 58.2 46 0.001 26.9 6.7 90 152-244 40-132 (256)
240 COG0409 HypD Hydrogenase matur 57.4 38 0.00082 28.4 5.8 84 106-189 120-219 (364)
241 PRK08410 2-hydroxyacid dehydro 56.2 63 0.0014 27.1 7.3 73 117-189 144-231 (311)
242 COG0111 SerA Phosphoglycerate 56.0 90 0.002 26.4 8.1 72 118-189 142-232 (324)
243 PRK06487 glycerate dehydrogena 55.0 56 0.0012 27.5 6.8 75 118-192 148-235 (317)
244 PRK06932 glycerate dehydrogena 55.0 62 0.0013 27.2 7.0 76 117-192 146-235 (314)
245 TIGR02130 dapB_plant dihydrodi 54.6 61 0.0013 26.7 6.6 105 107-213 14-124 (275)
246 COG1927 Mtd Coenzyme F420-depe 54.3 1E+02 0.0022 24.1 10.0 102 93-211 6-115 (277)
247 COG1519 KdtA 3-deoxy-D-manno-o 53.4 1.6E+02 0.0034 25.9 10.1 98 90-190 49-153 (419)
248 COG3580 Uncharacterized protei 52.5 1.4E+02 0.003 25.0 10.2 97 90-189 20-119 (351)
249 PF04016 DUF364: Domain of unk 52.4 64 0.0014 23.6 6.0 74 149-224 52-130 (147)
250 cd03146 GAT1_Peptidase_E Type 52.3 1.1E+02 0.0024 23.9 9.0 88 105-192 16-123 (212)
251 PRK11891 aspartate carbamoyltr 51.5 1.7E+02 0.0038 25.9 13.6 139 21-168 170-317 (429)
252 PF07801 DUF1647: Protein of u 51.4 86 0.0019 22.9 6.3 57 90-146 60-118 (142)
253 PLN02527 aspartate carbamoyltr 51.2 1.5E+02 0.0032 24.9 14.1 139 21-168 84-227 (306)
254 PRK14189 bifunctional 5,10-met 51.0 1.4E+02 0.0031 24.7 8.3 78 107-187 143-227 (285)
255 PF02670 DXP_reductoisom: 1-de 51.0 90 0.0019 22.4 8.3 94 89-188 22-119 (129)
256 PRK05339 PEP synthetase regula 51.0 57 0.0012 26.7 5.9 65 153-218 137-206 (269)
257 PLN02928 oxidoreductase family 50.6 70 0.0015 27.4 6.8 73 117-189 158-261 (347)
258 PLN02929 NADH kinase 50.4 55 0.0012 27.3 5.9 74 153-228 58-137 (301)
259 PRK13304 L-aspartate dehydroge 49.8 63 0.0014 26.3 6.2 78 109-192 16-94 (265)
260 PRK07579 hypothetical protein; 49.4 44 0.00095 26.9 5.0 32 93-126 3-34 (245)
261 PRK05282 (alpha)-aspartyl dipe 49.2 1.4E+02 0.003 24.0 8.6 43 151-193 71-123 (233)
262 PRK10637 cysG siroheme synthas 49.0 2E+02 0.0043 25.8 11.7 77 118-198 35-112 (457)
263 PF03401 TctC: Tripartite tric 48.3 1.5E+02 0.0033 24.3 10.3 140 93-238 80-242 (274)
264 PF03618 Kinase-PPPase: Kinase 48.0 77 0.0017 25.8 6.2 37 150-187 128-165 (255)
265 cd01016 TroA Metal binding pro 47.8 1.2E+02 0.0025 25.0 7.5 96 150-245 41-142 (276)
266 TIGR01921 DAP-DH diaminopimela 47.2 1.4E+02 0.003 25.3 7.8 75 109-191 18-92 (324)
267 PRK07714 hypothetical protein; 46.8 88 0.0019 21.1 7.0 76 103-179 20-98 (100)
268 PF02826 2-Hacid_dh_C: D-isome 46.7 69 0.0015 24.2 5.6 39 151-189 83-126 (178)
269 PF11238 DUF3039: Protein of u 46.5 17 0.00037 21.6 1.7 17 173-189 14-30 (58)
270 PF05014 Nuc_deoxyrib_tr: Nucl 46.5 19 0.00041 24.8 2.4 38 155-192 57-98 (113)
271 TIGR01470 cysG_Nterm siroheme 46.3 1.4E+02 0.003 23.3 13.6 123 118-244 32-163 (205)
272 PF13263 PHP_C: PHP-associated 46.3 13 0.00029 22.0 1.3 40 179-223 11-52 (56)
273 COG1701 Uncharacterized protei 46.3 1.4E+02 0.0031 23.4 8.9 161 88-262 68-245 (256)
274 PLN02819 lysine-ketoglutarate 46.2 1.2E+02 0.0026 30.4 8.2 69 121-190 608-679 (1042)
275 PRK06436 glycerate dehydrogena 45.7 99 0.0022 25.9 6.8 72 118-189 122-208 (303)
276 PRK13302 putative L-aspartate 45.2 1.4E+02 0.003 24.5 7.5 79 109-192 21-100 (271)
277 PRK05749 3-deoxy-D-manno-octul 45.0 2.1E+02 0.0046 25.0 9.9 100 90-190 50-154 (425)
278 TIGR03609 S_layer_CsaB polysac 44.7 1.8E+02 0.0039 24.0 10.1 84 103-191 11-107 (298)
279 cd05565 PTS_IIB_lactose PTS_II 44.4 91 0.002 21.1 5.2 71 121-191 4-80 (99)
280 PRK07283 hypothetical protein; 43.7 99 0.0021 20.8 6.1 73 105-179 22-97 (98)
281 PLN02696 1-deoxy-D-xylulose-5- 43.5 2.4E+02 0.0052 25.2 8.9 40 151-190 139-180 (454)
282 COG5017 Uncharacterized conser 43.1 1.3E+02 0.0028 21.9 7.5 54 141-198 47-101 (161)
283 COG0803 LraI ABC-type metal io 42.8 1.7E+02 0.0037 24.5 7.8 95 151-245 73-174 (303)
284 smart00040 CSF2 Granulocyte-ma 42.4 89 0.0019 21.3 4.7 72 215-288 16-90 (121)
285 COG3613 Nucleoside 2-deoxyribo 42.0 51 0.0011 24.8 4.0 37 155-191 64-106 (172)
286 PF03435 Saccharop_dh: Sacchar 41.9 92 0.002 26.9 6.4 79 108-189 12-97 (386)
287 PRK15438 erythronate-4-phospha 41.8 1.2E+02 0.0025 26.4 6.8 73 117-189 115-206 (378)
288 PF01993 MTD: methylene-5,6,7, 41.7 17 0.00036 28.9 1.5 104 94-214 6-117 (276)
289 TIGR00853 pts-lac PTS system, 41.2 63 0.0014 21.6 4.1 72 121-193 7-85 (95)
290 cd03129 GAT1_Peptidase_E_like 41.0 1.7E+02 0.0037 22.7 8.0 44 149-192 70-123 (210)
291 PRK10017 colanic acid biosynth 41.0 2.6E+02 0.0056 24.8 10.1 41 151-191 109-156 (426)
292 cd05213 NAD_bind_Glutamyl_tRNA 40.9 2.2E+02 0.0047 23.9 8.5 46 151-196 230-277 (311)
293 KOG0121 Nuclear cap-binding pr 40.5 43 0.00093 23.9 3.2 60 93-158 37-96 (153)
294 cd01017 AdcA Metal binding pro 40.3 1.5E+02 0.0033 24.3 7.2 95 149-244 42-153 (282)
295 PRK06719 precorrin-2 dehydroge 40.1 1.5E+02 0.0033 21.9 9.3 43 156-198 67-109 (157)
296 TIGR00725 conserved hypothetic 39.6 53 0.0011 24.5 3.9 39 152-192 84-124 (159)
297 cd01750 GATase1_CobQ Type 1 gl 39.5 1.1E+02 0.0023 23.6 5.7 63 121-189 3-78 (194)
298 TIGR00243 Dxr 1-deoxy-D-xylulo 39.4 2.5E+02 0.0055 24.5 8.2 84 103-189 36-123 (389)
299 PRK12464 1-deoxy-D-xylulose 5- 39.4 2.4E+02 0.0052 24.6 8.1 84 103-189 31-116 (383)
300 PRK10840 transcriptional regul 39.2 1.8E+02 0.0039 22.4 11.0 108 118-228 3-126 (216)
301 cd01020 TroA_b Metal binding p 38.7 1.5E+02 0.0032 24.1 6.8 77 37-124 5-82 (264)
302 PF00391 PEP-utilizers: PEP-ut 38.5 1E+02 0.0022 19.7 4.7 49 142-191 13-61 (80)
303 PRK08192 aspartate carbamoyltr 38.4 2.5E+02 0.0055 24.0 13.8 138 22-168 89-235 (338)
304 PRK00257 erythronate-4-phospha 38.3 1.5E+02 0.0033 25.8 6.9 72 117-188 115-205 (381)
305 PRK08366 vorA 2-ketoisovalerat 38.0 1.7E+02 0.0036 25.6 7.2 52 118-169 259-320 (390)
306 PF03447 NAD_binding_3: Homose 37.9 33 0.00072 23.7 2.5 44 151-194 49-94 (117)
307 cd01019 ZnuA Zinc binding prot 37.5 2.4E+02 0.0051 23.3 8.7 96 149-245 42-162 (286)
308 TIGR00715 precor6x_red precorr 37.3 1.9E+02 0.0041 23.5 7.0 120 91-226 130-255 (256)
309 cd01018 ZntC Metal binding pro 36.3 1.8E+02 0.0039 23.7 6.9 92 151-244 43-152 (266)
310 PF14359 DUF4406: Domain of un 36.2 73 0.0016 21.2 3.8 34 154-187 54-90 (92)
311 cd05564 PTS_IIB_chitobiose_lic 36.1 86 0.0019 20.9 4.2 71 121-191 3-79 (96)
312 PRK08605 D-lactate dehydrogena 36.0 1.9E+02 0.0041 24.6 7.1 76 117-192 145-238 (332)
313 PRK11790 D-3-phosphoglycerate 35.9 1.3E+02 0.0028 26.4 6.3 73 117-189 150-238 (409)
314 PF00185 OTCace: Aspartate/orn 35.8 1.8E+02 0.0038 21.6 6.2 72 91-169 2-83 (158)
315 PRK15409 bifunctional glyoxyla 35.5 1.7E+02 0.0036 24.8 6.7 75 118-192 145-238 (323)
316 PF00389 2-Hacid_dh: D-isomer 35.4 1.6E+02 0.0035 20.8 12.0 55 140-196 19-73 (133)
317 PTZ00182 3-methyl-2-oxobutanat 35.4 1.5E+02 0.0033 25.4 6.5 42 142-183 267-311 (355)
318 PRK13243 glyoxylate reductase; 35.0 1.3E+02 0.0028 25.5 6.0 75 117-191 149-241 (333)
319 PRK08057 cobalt-precorrin-6x r 34.8 2.5E+02 0.0053 22.8 7.3 74 142-226 171-247 (248)
320 cd01137 PsaA Metal binding pro 34.7 2.6E+02 0.0057 23.1 8.0 94 151-245 58-158 (287)
321 COG1052 LdhA Lactate dehydroge 33.9 3E+02 0.0064 23.4 8.0 75 119-193 147-239 (324)
322 TIGR01850 argC N-acetyl-gamma- 33.7 1E+02 0.0023 26.3 5.3 81 108-188 15-97 (346)
323 PRK14175 bifunctional 5,10-met 33.6 2.4E+02 0.0052 23.5 7.1 61 107-168 143-210 (286)
324 PF13905 Thioredoxin_8: Thiore 33.5 75 0.0016 20.6 3.6 38 103-140 17-57 (95)
325 COG0745 OmpR Response regulato 33.4 2.5E+02 0.0054 22.4 8.6 98 131-228 14-118 (229)
326 TIGR01851 argC_other N-acetyl- 33.3 1.2E+02 0.0026 25.5 5.3 63 107-188 15-78 (310)
327 TIGR00670 asp_carb_tr aspartat 33.3 2.9E+02 0.0063 23.1 13.8 138 21-168 83-225 (301)
328 cd01453 vWA_transcription_fact 33.1 2.2E+02 0.0047 21.6 7.0 53 106-159 125-177 (183)
329 TIGR02356 adenyl_thiF thiazole 33.1 2.2E+02 0.0048 22.0 6.6 48 146-193 98-146 (202)
330 COG2247 LytB Putative cell wal 32.7 3.1E+02 0.0066 23.2 8.3 16 36-51 30-45 (337)
331 PRK11579 putative oxidoreducta 32.5 2.7E+02 0.0058 23.7 7.6 88 92-189 5-94 (346)
332 PRK13303 L-aspartate dehydroge 32.0 1.8E+02 0.0039 23.7 6.2 78 109-192 16-94 (265)
333 PF01488 Shikimate_DH: Shikima 32.0 32 0.00069 24.7 1.7 71 90-168 11-84 (135)
334 COG3414 SgaB Phosphotransferas 31.4 79 0.0017 21.1 3.3 48 121-168 5-58 (93)
335 TIGR00035 asp_race aspartate r 31.4 1.7E+02 0.0038 23.1 5.9 94 93-189 3-104 (229)
336 PRK14350 ligA NAD-dependent DN 31.3 1.8E+02 0.0038 27.6 6.6 49 141-189 598-658 (669)
337 PRK13761 hypothetical protein; 31.3 2.7E+02 0.0059 22.2 9.1 162 88-263 66-243 (248)
338 TIGR00730 conserved hypothetic 31.2 1.7E+02 0.0037 22.2 5.6 40 151-192 88-135 (178)
339 PRK09545 znuA high-affinity zi 31.2 3.2E+02 0.0069 23.0 8.0 95 150-245 64-186 (311)
340 TIGR02990 ectoine_eutA ectoine 31.0 2.8E+02 0.0061 22.3 7.7 48 145-193 162-216 (239)
341 PF07085 DRTGG: DRTGG domain; 31.0 88 0.0019 21.1 3.7 18 149-166 73-90 (105)
342 cd01018 ZntC Metal binding pro 30.9 2.9E+02 0.0063 22.4 7.9 55 37-98 5-59 (266)
343 PF06345 Drf_DAD: DRF Autoregu 30.8 41 0.00089 13.6 1.1 10 175-184 5-14 (15)
344 PF04413 Glycos_transf_N: 3-De 30.7 2.5E+02 0.0053 21.5 7.4 100 91-191 22-126 (186)
345 PRK11391 etp phosphotyrosine-p 30.7 79 0.0017 23.0 3.6 41 24-64 66-106 (144)
346 PRK07574 formate dehydrogenase 30.6 1.3E+02 0.0027 26.3 5.3 75 118-192 192-286 (385)
347 PTZ00408 NAD-dependent deacety 30.6 2.9E+02 0.0063 22.3 8.9 55 139-193 150-209 (242)
348 PRK03371 pdxA 4-hydroxythreoni 30.1 2.4E+02 0.0053 23.9 6.7 77 139-225 236-322 (326)
349 PRK12480 D-lactate dehydrogena 30.0 1.2E+02 0.0027 25.7 5.1 75 118-192 146-236 (330)
350 TIGR03787 marine_sort_RR prote 29.3 2.6E+02 0.0057 21.4 8.7 74 151-227 34-119 (227)
351 PRK03743 pdxA 4-hydroxythreoni 29.2 1.8E+02 0.0039 24.8 5.8 78 139-226 237-324 (332)
352 PF05822 UMPH-1: Pyrimidine 5' 29.0 3.1E+02 0.0068 22.2 9.9 140 21-179 93-244 (246)
353 PRK10360 DNA-binding transcrip 28.8 2.5E+02 0.0053 20.9 10.5 105 120-227 3-117 (196)
354 PRK14142 heat shock protein Gr 28.7 1.8E+02 0.0038 23.2 5.2 48 215-263 49-96 (223)
355 PRK15469 ghrA bifunctional gly 28.7 1.4E+02 0.003 25.1 5.1 72 118-189 136-225 (312)
356 PRK10126 tyrosine phosphatase; 28.5 76 0.0017 23.1 3.2 42 24-65 66-107 (147)
357 PRK13015 3-dehydroquinate dehy 28.5 1.7E+02 0.0036 21.5 4.7 31 158-188 66-98 (146)
358 COG0771 MurD UDP-N-acetylmuram 28.3 4.4E+02 0.0095 23.6 10.0 101 35-141 289-391 (448)
359 PRK06843 inosine 5-monophospha 28.2 1.4E+02 0.003 26.2 5.1 70 157-226 10-88 (404)
360 PRK01713 ornithine carbamoyltr 27.9 3.8E+02 0.0083 22.8 13.5 134 22-167 90-233 (334)
361 PF09949 DUF2183: Uncharacteri 27.8 73 0.0016 21.6 2.7 35 104-138 50-86 (100)
362 KOG0368 Acetyl-CoA carboxylase 27.7 1.5E+02 0.0032 30.9 5.5 76 105-195 125-202 (2196)
363 PF02571 CbiJ: Precorrin-6x re 27.7 2.6E+02 0.0056 22.7 6.3 54 142-195 175-231 (249)
364 PRK10100 DNA-binding transcrip 27.6 2.3E+02 0.0049 22.3 5.9 78 151-229 44-128 (216)
365 PRK13398 3-deoxy-7-phosphohept 27.4 3.5E+02 0.0076 22.2 8.4 97 95-191 29-142 (266)
366 PLN02306 hydroxypyruvate reduc 27.4 2.9E+02 0.0062 24.2 6.9 75 118-192 165-274 (386)
367 PRK08300 acetaldehyde dehydrog 27.3 2.6E+02 0.0056 23.5 6.3 91 92-190 5-101 (302)
368 TIGR03855 NAD_NadX aspartate d 27.1 1.5E+02 0.0033 23.6 4.8 60 129-193 11-71 (229)
369 PRK05395 3-dehydroquinate dehy 27.0 1.7E+02 0.0038 21.4 4.6 38 151-188 55-98 (146)
370 COG0289 DapB Dihydrodipicolina 27.0 2E+02 0.0043 23.5 5.4 88 107-197 16-107 (266)
371 PF03102 NeuB: NeuB family; I 27.0 86 0.0019 25.2 3.4 64 129-193 57-123 (241)
372 TIGR01361 DAHP_synth_Bsub phos 26.9 2E+02 0.0044 23.4 5.6 60 131-191 79-140 (260)
373 PF02006 DUF137: Protein of un 26.6 2.9E+02 0.0062 20.9 7.4 87 157-256 87-175 (178)
374 PF07997 DUF1694: Protein of u 26.0 80 0.0017 22.3 2.7 51 94-144 39-91 (120)
375 cd01145 TroA_c Periplasmic bin 26.0 1E+02 0.0022 23.9 3.7 55 37-98 5-59 (203)
376 TIGR01327 PGDH D-3-phosphoglyc 26.0 2.8E+02 0.0061 25.4 6.9 72 118-189 138-228 (525)
377 COG1648 CysG Siroheme synthase 25.6 3.3E+02 0.0072 21.4 11.6 141 118-262 35-185 (210)
378 cd01409 SIRT4 SIRT4: Eukaryoti 25.4 2.8E+02 0.006 22.6 6.2 54 140-193 181-241 (260)
379 PF03568 Peptidase_C50: Peptid 25.4 1.9E+02 0.0041 25.2 5.5 17 174-190 358-374 (383)
380 PF15586 Imm47: Immunity prote 25.0 69 0.0015 22.4 2.3 25 204-228 67-91 (116)
381 TIGR01430 aden_deam adenosine 24.9 4.2E+02 0.009 22.2 8.7 42 151-192 223-274 (324)
382 TIGR02690 resist_ArsH arsenica 24.8 3.5E+02 0.0077 21.4 6.6 83 91-181 27-117 (219)
383 PRK13895 conjugal transfer pro 24.7 2.8E+02 0.0061 20.2 6.7 65 204-268 14-82 (144)
384 PF01451 LMWPc: Low molecular 24.6 1.2E+02 0.0025 21.7 3.6 40 25-64 68-108 (138)
385 PRK11199 tyrA bifunctional cho 24.4 3.2E+02 0.007 23.7 6.7 14 152-165 135-148 (374)
386 COG0062 Uncharacterized conser 24.2 3.5E+02 0.0076 21.2 6.9 100 90-193 49-161 (203)
387 PF01531 Glyco_transf_11: Glyc 23.9 2.8E+02 0.0062 23.0 6.1 59 106-167 190-255 (298)
388 PRK14154 heat shock protein Gr 23.8 2.9E+02 0.0064 21.7 5.7 44 220-264 73-116 (208)
389 PRK09212 pyruvate dehydrogenas 23.7 3.4E+02 0.0073 23.0 6.6 42 142-183 235-279 (327)
390 PF00533 BRCT: BRCA1 C Terminu 23.7 92 0.002 19.1 2.6 64 117-189 7-71 (78)
391 cd01410 SIRT7 SIRT7: Eukaryoti 23.5 2.9E+02 0.0063 21.6 5.8 54 139-192 131-191 (206)
392 PRK14164 heat shock protein Gr 23.4 2.9E+02 0.0063 21.9 5.6 47 216-263 87-133 (218)
393 PF04312 DUF460: Protein of un 23.3 79 0.0017 22.9 2.3 28 171-198 64-92 (138)
394 COG1712 Predicted dinucleotide 23.2 2.1E+02 0.0045 23.0 4.7 82 108-195 14-96 (255)
395 PRK14155 heat shock protein Gr 23.2 2.8E+02 0.006 21.8 5.5 47 217-264 31-77 (208)
396 TIGR02853 spore_dpaA dipicolin 23.2 4.4E+02 0.0094 21.9 8.4 71 117-187 150-237 (287)
397 PRK00436 argC N-acetyl-gamma-g 23.1 2.1E+02 0.0046 24.4 5.3 80 108-189 17-98 (343)
398 PF10163 EnY2: Transcription f 23.0 2.3E+02 0.0049 18.5 5.3 43 219-261 3-45 (86)
399 TIGR01088 aroQ 3-dehydroquinat 22.9 2.8E+02 0.0061 20.2 5.0 38 151-188 53-96 (141)
400 KOG2555 AICAR transformylase/I 22.9 1.9E+02 0.0042 25.3 4.8 70 125-198 496-566 (588)
401 TIGR02154 PhoB phosphate regul 22.9 3.4E+02 0.0074 20.5 8.6 78 151-228 36-122 (226)
402 cd00446 GrpE GrpE is the adeni 22.8 2.9E+02 0.0064 19.8 5.6 47 217-264 3-49 (137)
403 PF03358 FMN_red: NADPH-depend 22.7 2.2E+02 0.0047 20.5 4.8 86 93-181 3-97 (152)
404 smart00292 BRCT breast cancer 22.6 1.9E+02 0.004 17.4 5.8 65 117-189 4-70 (80)
405 cd00115 LMWPc Substituted upda 22.5 1.5E+02 0.0033 21.2 3.8 40 26-65 69-108 (141)
406 PRK13397 3-deoxy-7-phosphohept 22.5 2.9E+02 0.0063 22.5 5.6 60 131-191 69-130 (250)
407 PRK08306 dipicolinate synthase 22.2 4.3E+02 0.0093 22.0 6.9 38 153-190 49-101 (296)
408 cd00040 CSF2 Granulocyte Macro 22.0 2.5E+02 0.0054 19.4 4.3 72 215-288 16-90 (121)
409 cd01408 SIRT1 SIRT1: Eukaryoti 22.0 3.2E+02 0.007 21.8 5.9 54 140-193 152-211 (235)
410 PRK08328 hypothetical protein; 22.0 2.1E+02 0.0045 22.8 4.8 48 148-196 107-156 (231)
411 cd01425 RPS2 Ribosomal protein 21.9 3.8E+02 0.0082 20.6 7.2 32 157-189 125-156 (193)
412 PLN02683 pyruvate dehydrogenas 21.9 3E+02 0.0066 23.7 6.0 80 143-227 263-351 (356)
413 PF04166 PdxA: Pyridoxal phosp 21.8 2.6E+02 0.0056 23.4 5.3 77 139-225 211-297 (298)
414 PLN03139 formate dehydrogenase 21.7 2.2E+02 0.0047 24.9 5.1 74 118-191 199-292 (386)
415 PRK06270 homoserine dehydrogen 21.5 4.6E+02 0.0099 22.4 7.0 41 151-191 79-126 (341)
416 PRK09190 hypothetical protein; 21.5 4.2E+02 0.0091 21.1 7.1 75 105-180 115-198 (220)
417 COG0803 LraI ABC-type metal io 21.4 2.7E+02 0.0059 23.3 5.5 71 36-117 34-104 (303)
418 COG2870 RfaE ADP-heptose synth 21.2 5.8E+02 0.013 22.6 8.3 86 151-247 135-224 (467)
419 PRK13837 two-component VirA-li 21.2 7.8E+02 0.017 24.0 9.9 103 120-227 699-813 (828)
420 TIGR00557 pdxA 4-hydroxythreon 21.1 1.3E+02 0.0029 25.4 3.6 77 139-225 230-316 (320)
421 cd01492 Aos1_SUMO Ubiquitin ac 21.1 3.2E+02 0.007 21.1 5.6 46 153-198 104-150 (197)
422 cd01019 ZnuA Zinc binding prot 20.9 2.7E+02 0.0059 23.0 5.4 55 37-98 6-60 (286)
423 PRK08223 hypothetical protein; 20.9 3.5E+02 0.0076 22.5 5.9 47 147-193 105-154 (287)
424 PRK00232 pdxA 4-hydroxythreoni 20.8 5E+02 0.011 22.2 6.9 78 139-226 237-324 (332)
425 PRK14140 heat shock protein Gr 20.8 4.1E+02 0.0088 20.6 5.9 46 217-263 55-100 (191)
426 PRK14139 heat shock protein Gr 20.7 3.6E+02 0.0079 20.7 5.5 48 216-264 49-96 (185)
427 TIGR03677 rpl7ae 50S ribosomal 20.6 3.1E+02 0.0067 19.2 7.6 76 103-179 28-108 (117)
428 cd07347 harmonin_N_like N-term 20.6 2.5E+02 0.0054 18.1 5.4 46 214-261 4-49 (78)
429 PF01118 Semialdhyde_dh: Semia 20.3 1.4E+02 0.0031 20.7 3.2 77 107-188 13-95 (121)
430 PRK06015 keto-hydroxyglutarate 20.1 4.3E+02 0.0093 20.6 7.6 15 144-158 101-115 (201)
431 PRK13581 D-3-phosphoglycerate 20.1 4E+02 0.0087 24.4 6.7 70 118-187 140-227 (526)
432 cd05312 NAD_bind_1_malic_enz N 20.0 5.1E+02 0.011 21.5 8.1 38 151-188 95-137 (279)
No 1
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=6.9e-45 Score=318.87 Aligned_cols=288 Identities=79% Similarity=1.315 Sum_probs=254.5
Q ss_pred ccccccceeccccCCCcccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHH
Q 022615 2 SYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMR 81 (294)
Q Consensus 2 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~ 81 (294)
++|+|.+.+.+.+...+..+.++.+++++++.+|.++++|+.+++.+.+.+..+.+++.++|||+|.+.|.+.......+
T Consensus 174 ~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~ 253 (465)
T PLN02871 174 SYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMR 253 (465)
T ss_pred EEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHH
Confidence 56777776665554444445555678899999999999999999999987655567999999999999887754444444
Q ss_pred HHhhcCCCCCceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCC
Q 022615 82 WRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGD 161 (294)
Q Consensus 82 ~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad 161 (294)
.+.....++.++|+|+|++++.||++.++++++.+++++|+|+|+|++.+.++++....+|.|+|+++++++..+|+.||
T Consensus 254 ~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aD 333 (465)
T PLN02871 254 ARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGD 333 (465)
T ss_pred HHhcCCCCCCeEEEEeCCCchhhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCC
Confidence 33333344678899999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred EEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCC---CcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHH
Q 022615 162 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD---GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQA 238 (294)
Q Consensus 162 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~---~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~ 238 (294)
++++||..|++|++++|||+||+|||+++.++..|++ .+ +.+|++++++|+++++++|.++++|++.+++++++
T Consensus 334 v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv---~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~ 410 (465)
T PLN02871 334 VFVMPSESETLGFVVLEAMASGVPVVAARAGGIPDII---PPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAA 410 (465)
T ss_pred EEEECCcccccCcHHHHHHHcCCCEEEcCCCCcHhhh---hcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 66 89999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhcCCCccc
Q 022615 239 ARQEMEKYDWRAATRTIRNEQYNAAIWFWRKKRAQLLRPIQWLAKRIFPSAEVN 292 (294)
Q Consensus 239 ~~~~~~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (294)
+++.+++|+|+..++++++.+|++++..+++++.+.+.+..+.+...+++...|
T Consensus 411 a~~~~~~fsw~~~a~~l~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (465)
T PLN02871 411 AREEVEKWDWRAATRKLRNEQYSAAIWFWRKKRAQLLGPVQWLPAQLFPAPEVN 464 (465)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccC
Confidence 999998999999999999668999999999999999999999999999987765
No 2
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=4.8e-37 Score=264.10 Aligned_cols=224 Identities=25% Similarity=0.377 Sum_probs=198.8
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
...+..++++|.++++|+..++.+.+. +.+++++.++|||+|.+.|.+.... ...+.+.|+++|++.+.|
T Consensus 166 ~~~~~~~~~ad~vv~~S~~~~~~l~~~-g~~~~ki~vi~nGvd~~~f~~~~~~---------~~~~~~~il~vGrl~~~K 235 (406)
T PRK15427 166 PEYQQLFRRGDLMLPISDLWAGRLQKM-GCPPEKIAVSRMGVDMTRFSPRPVK---------APATPLEIISVARLTEKK 235 (406)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHHHc-CCCHHHEEEcCCCCCHHHcCCCccc---------cCCCCeEEEEEeCcchhc
Confidence 356778899999999999999999875 5677899999999999888653221 123456799999999999
Q ss_pred cHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcCC----CeEEEecccchhHHHHHhcCCEEEeecCC------C
Q 022615 105 SLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSES------E 170 (294)
Q Consensus 105 ~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~----~v~~~g~~~~~~~~~~~~~ad~~l~ps~~------e 170 (294)
|++.++++++.+ +++++.|+|+|+..+.+++++++. +|.+.|+++++++.++|+.||++++||.. |
T Consensus 236 g~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~E 315 (406)
T PRK15427 236 GLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDME 315 (406)
T ss_pred CHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCcc
Confidence 999999999766 579999999999888888877643 59999999999999999999999999974 9
Q ss_pred CcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh-ChHHHHHHHHHHHHHH-HhCCH
Q 022615 171 TLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEM-EKYDW 248 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~-~~~s~ 248 (294)
|+|++++|||+||+|||+|+.++..|++ .++.+|++++++|+++++++|.++++ |++.+.+|++++++.+ ++|+|
T Consensus 316 g~p~~llEAma~G~PVI~t~~~g~~E~v---~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~ 392 (406)
T PRK15427 316 GIPVALMEAMAVGIPVVSTLHSGIPELV---EADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQ 392 (406)
T ss_pred CccHHHHHHHhCCCCEEEeCCCCchhhh---cCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999999 88999999999999999999999999 9999999999999998 56999
Q ss_pred HHHHHHHHHHHHHH
Q 022615 249 RAATRTIRNEQYNA 262 (294)
Q Consensus 249 ~~~~~~~~~~l~~~ 262 (294)
+..++++. .+|++
T Consensus 393 ~~~~~~l~-~~~~~ 405 (406)
T PRK15427 393 QVINRELA-SLLQA 405 (406)
T ss_pred HHHHHHHH-HHHhh
Confidence 99999998 67764
No 3
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=7.7e-36 Score=255.68 Aligned_cols=234 Identities=26% Similarity=0.391 Sum_probs=201.0
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE 103 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 103 (294)
+++.+...+.+|.++++|+.+++.+.+.++.+++++.+||||+|.+.+.+.........+.....++.++++++|++.+.
T Consensus 127 ~~~~~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~ 206 (374)
T TIGR03088 127 RWLRRLYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAV 206 (374)
T ss_pred HHHHHHHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEEEEecCCcc
Confidence 34566667789999999999999998887777789999999999988866532222222222234567899999999999
Q ss_pred ccHHHHHHHHHhC----C----CcEEEEEcCCccHHHHHhhhcCC----CeEEEecccchhHHHHHhcCCEEEeecCCCC
Q 022615 104 KSLDFLKRVMDRL----P----EARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESET 171 (294)
Q Consensus 104 k~~~~l~~~~~~~----~----~~~l~i~G~~~~~~~~~~~~~~~----~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~ 171 (294)
||++.+++++..+ + +++|+++|.|+..+.+++.++.. ++.+.|.. +|+.++|+.||++++||..||
T Consensus 207 Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~pS~~Eg 284 (374)
T TIGR03088 207 KDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGER--DDVPALMQALDLFVLPSLAEG 284 (374)
T ss_pred cCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCc--CCHHHHHHhcCEEEecccccc
Confidence 9999999998764 2 68999999998888887776643 47788865 899999999999999999999
Q ss_pred cchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHH
Q 022615 172 LGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRA 250 (294)
Q Consensus 172 ~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~ 250 (294)
+|++++|||+||+|||+++.++..|++ .++.+|++++++|+++++++|..++++++.+.++++++++.+ ++|+|+.
T Consensus 285 ~~~~~lEAma~G~Pvv~s~~~g~~e~i---~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 361 (374)
T TIGR03088 285 ISNTILEAMASGLPVIATAVGGNPELV---QHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINA 361 (374)
T ss_pred CchHHHHHHHcCCCEEEcCCCCcHHHh---cCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999999999999 888999999999999999999999999999999999999998 5799999
Q ss_pred HHHHHHHHHHHHH
Q 022615 251 ATRTIRNEQYNAA 263 (294)
Q Consensus 251 ~~~~~~~~l~~~~ 263 (294)
+++++. .+|+++
T Consensus 362 ~~~~~~-~~y~~~ 373 (374)
T TIGR03088 362 MVAAYA-GLYDQL 373 (374)
T ss_pred HHHHHH-HHHHHh
Confidence 999999 899875
No 4
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=3.7e-35 Score=254.00 Aligned_cols=236 Identities=29% Similarity=0.427 Sum_probs=202.8
Q ss_pred HHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccc
Q 022615 23 MWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV 102 (294)
Q Consensus 23 ~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~ 102 (294)
.+.+++.+++++|.++++|+...+.+...++.+.+++.+||||+|.+.+.+.. ....+.+.. ..++.++|+|+|++.+
T Consensus 153 ~~~~e~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~-~~~~~~~~~-~~~~~~~i~~~G~l~~ 230 (405)
T TIGR03449 153 RRIGEQQLVDNADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGD-RATERARLG-LPLDTKVVAFVGRIQP 230 (405)
T ss_pred HHHHHHHHHHhcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCc-HHHHHHhcC-CCCCCcEEEEecCCCc
Confidence 34567889999999999999999988887777778999999999998886542 222233322 2346789999999999
Q ss_pred cccHHHHHHHHHhC----CC--cEEEEEcC----C-ccHHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEeec
Q 022615 103 EKSLDFLKRVMDRL----PE--ARIAFIGD----G-PYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 103 ~k~~~~l~~~~~~~----~~--~~l~i~G~----~-~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
.||++.++++++.+ ++ ++|+|+|. | +..+.++++++. .+|.+.|+++++++.++|+.||++++||
T Consensus 231 ~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps 310 (405)
T TIGR03449 231 LKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPS 310 (405)
T ss_pred ccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECC
Confidence 99999999999765 55 89999995 3 344566666553 3699999999999999999999999999
Q ss_pred CCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCC
Q 022615 168 ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 247 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s 247 (294)
..|++|++++|||++|+|||+++.++..+++ .++.+|++++++|.++++++|.+++++++.++++++++++.+++|+
T Consensus 311 ~~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i---~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fs 387 (405)
T TIGR03449 311 YNESFGLVAMEAQACGTPVVAARVGGLPVAV---ADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAGFS 387 (405)
T ss_pred CCCCcChHHHHHHHcCCCEEEecCCCcHhhh---ccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999 7889999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022615 248 WRAATRTIRNEQYNAAI 264 (294)
Q Consensus 248 ~~~~~~~~~~~l~~~~~ 264 (294)
|+.+++++. .+|++++
T Consensus 388 w~~~~~~~~-~~y~~~~ 403 (405)
T TIGR03449 388 WAATADGLL-SSYRDAL 403 (405)
T ss_pred HHHHHHHHH-HHHHHHh
Confidence 999999999 8998865
No 5
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=4.4e-35 Score=253.90 Aligned_cols=238 Identities=19% Similarity=0.267 Sum_probs=202.0
Q ss_pred cccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccch--HHHHHhhcCCCCCceEEEe
Q 022615 20 VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS--EMRWRLSNGEPDKPLIVHV 97 (294)
Q Consensus 20 ~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~ 97 (294)
.+....+++++++.+|.++++|+.+++.+.+. +.++.++.+||||+|.+.+.+..... ..+.+. ...++.++++|+
T Consensus 158 ~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~-~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 235 (412)
T PRK10307 158 ARLATAFERSLLRRFDNVSTISRSMMNKAREK-GVAAEKVIFFPNWSEVARFQPVADADVDALRAQL-GLPDGKKIVLYS 235 (412)
T ss_pred HHHHHHHHHHHHhhCCEEEecCHHHHHHHHHc-CCCcccEEEECCCcCHhhcCCCCccchHHHHHHc-CCCCCCEEEEEc
Confidence 34455689999999999999999999999875 45677999999999998876543221 222222 223456789999
Q ss_pred ecccccccHHHHHHHHHhC---CCcEEEEEcCCccHHHHHhhhcCC---CeEEEecccchhHHHHHhcCCEEEeecCCCC
Q 022615 98 GRLGVEKSLDFLKRVMDRL---PEARIAFIGDGPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDVFVMPSESET 171 (294)
Q Consensus 98 G~~~~~k~~~~l~~~~~~~---~~~~l~i~G~~~~~~~~~~~~~~~---~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~ 171 (294)
|++.+.||++.++++++.+ ++++|+|+|+|+..+.++++++.. +|.++|+++++++.++|+.||++++|+..|+
T Consensus 236 G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~ 315 (412)
T PRK10307 236 GNIGEKQGLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGA 315 (412)
T ss_pred CccccccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCc
Confidence 9999999999999999876 579999999999888887776533 6999999999999999999999999999887
Q ss_pred ----cchHHHHHHhcCCCEEeecCCC--cccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-
Q 022615 172 ----LGLVVLEAMSSGIPVVGVRAGG--IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME- 244 (294)
Q Consensus 172 ----~~~~~~Ea~a~G~pvI~~~~~~--~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~- 244 (294)
+|.+++|||+||+|||+++.++ ..+++ . .+|++++++|+++++++|.++++|++.+++|++++++.++
T Consensus 316 ~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i---~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~ 390 (412)
T PRK10307 316 ADLVLPSKLTNMLASGRNVVATAEPGTELGQLV---E--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAER 390 (412)
T ss_pred ccccCcHHHHHHHHcCCCEEEEeCCCchHHHHH---h--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 6889999999999999998876 45777 4 6899999999999999999999999999999999999985
Q ss_pred hCCHHHHHHHHHHHHHHHHHH
Q 022615 245 KYDWRAATRTIRNEQYNAAIW 265 (294)
Q Consensus 245 ~~s~~~~~~~~~~~l~~~~~~ 265 (294)
+|||+.+++++. .+|+++++
T Consensus 391 ~fs~~~~~~~~~-~~~~~~~~ 410 (412)
T PRK10307 391 TLDKENVLRQFI-ADIRGLVA 410 (412)
T ss_pred HcCHHHHHHHHH-HHHHHHhc
Confidence 699999999998 78888764
No 6
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=3.3e-34 Score=246.83 Aligned_cols=236 Identities=27% Similarity=0.454 Sum_probs=198.6
Q ss_pred cHHHHHHHHHHhCCeEEecchhhHHHHHHhc-cCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecc
Q 022615 22 PMWLVIKFLHRAADLTLVPSVAIGKDLEAAR-VTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL 100 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~-~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 100 (294)
...++++..++.+|.++++|+.+++.+.+.+ +.+.+++.++|||+|.+.+.+. .....+.+.. ..++.++++|+|++
T Consensus 133 ~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~-~~~~~~~~~~-~~~~~~~i~~~Grl 210 (388)
T TIGR02149 133 LSSWAEKTAIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPD-DGNVVLDRYG-IDRSRPYILFVGRI 210 (388)
T ss_pred HHHHHHHHHHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCC-chHHHHHHhC-CCCCceEEEEEccc
Confidence 3457789999999999999999999998876 4556789999999999887654 2222333332 24566789999999
Q ss_pred cccccHHHHHHHHHhC-CCcEEEEEcCCccH----HHHHhhhcC-----CCeEEE-ecccchhHHHHHhcCCEEEeecCC
Q 022615 101 GVEKSLDFLKRVMDRL-PEARIAFIGDGPYR----EELEKMFTG-----MPAVFT-GMLLGEELSQAYASGDVFVMPSES 169 (294)
Q Consensus 101 ~~~k~~~~l~~~~~~~-~~~~l~i~G~~~~~----~~~~~~~~~-----~~v~~~-g~~~~~~~~~~~~~ad~~l~ps~~ 169 (294)
.+.||++.++++++.+ ++++++++|.|... +.+++.... .++.+. |.++.+++..+|+.||++++||..
T Consensus 211 ~~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~ 290 (388)
T TIGR02149 211 TRQKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIY 290 (388)
T ss_pred ccccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCcc
Confidence 9999999999999987 47899998876543 333333322 236654 678999999999999999999999
Q ss_pred CCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCH------HHHHHHHHHHhhChHHHHHHHHHHHHHH
Q 022615 170 ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDL------DDCLSKLEPLLYNQELRETMGQAARQEM 243 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~------~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 243 (294)
|++|.+++|||+||+|||+++.++..|++ .++.+|++++++|. ++++++|.+++++++.++++++++++.+
T Consensus 291 e~~g~~~lEA~a~G~PvI~s~~~~~~e~i---~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 367 (388)
T TIGR02149 291 EPLGIVNLEAMACGTPVVASATGGIPEVV---VDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRA 367 (388)
T ss_pred CCCChHHHHHHHcCCCEEEeCCCCHHHHh---hCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 78889999999888 9999999999999999999999999987
Q ss_pred -HhCCHHHHHHHHHHHHHHHH
Q 022615 244 -EKYDWRAATRTIRNEQYNAA 263 (294)
Q Consensus 244 -~~~s~~~~~~~~~~~l~~~~ 263 (294)
++|+|+.+++++. .+|+++
T Consensus 368 ~~~~s~~~~~~~~~-~~y~~~ 387 (388)
T TIGR02149 368 EEEFSWGSIAKKTV-EMYRKV 387 (388)
T ss_pred HHhCCHHHHHHHHH-HHHHhh
Confidence 5799999999999 899875
No 7
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=5e-34 Score=243.88 Aligned_cols=219 Identities=34% Similarity=0.509 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccc
Q 022615 23 MWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV 102 (294)
Q Consensus 23 ~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~ 102 (294)
.+.+++.+++.+|.++++|+.+++.+.+. +.++.++.++|||+|.+.+.+... ..+...++|+|++.+
T Consensus 132 ~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~~~~~i~vi~~g~d~~~~~~~~~-----------~~~~~~i~~~G~~~~ 199 (367)
T cd05844 132 YARRRRRLARRAALFIAVSQFIRDRLLAL-GFPPEKVHVHPIGVDTAKFTPATP-----------ARRPPRILFVGRFVE 199 (367)
T ss_pred HHHHHHHHHHhcCEEEECCHHHHHHHHHc-CCCHHHeEEecCCCCHHhcCCCCC-----------CCCCcEEEEEEeecc
Confidence 45678888999999999999999999886 456678999999999887755321 235678999999999
Q ss_pred cccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEeecC------
Q 022615 103 EKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSE------ 168 (294)
Q Consensus 103 ~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps~------ 168 (294)
.||++.+++++..+ ++++|+++|.|+..+.++++++. .+|.+.|+++++++..+|+.||++++||.
T Consensus 200 ~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~ 279 (367)
T cd05844 200 KKGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGD 279 (367)
T ss_pred ccChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCC
Confidence 99999999998765 68999999999877777777654 36999999999999999999999999986
Q ss_pred CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCC
Q 022615 169 SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYD 247 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s 247 (294)
.||+|++++|||+||+|||+++.++..+++ .++.+|+++++.|+++++++|.+++++++.+.+++.++++.+ ++|+
T Consensus 280 ~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s 356 (367)
T cd05844 280 AEGLPVVLLEAQASGVPVVATRHGGIPEAV---EDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFD 356 (367)
T ss_pred ccCCchHHHHHHHcCCCEEEeCCCCchhhe---ecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCC
Confidence 489999999999999999999999999999 788999999999999999999999999999999999999998 5699
Q ss_pred HHHHHHHHH
Q 022615 248 WRAATRTIR 256 (294)
Q Consensus 248 ~~~~~~~~~ 256 (294)
|+..++++.
T Consensus 357 ~~~~~~~l~ 365 (367)
T cd05844 357 LRRQTAKLE 365 (367)
T ss_pred HHHHHHHHh
Confidence 999999886
No 8
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=5.2e-34 Score=245.88 Aligned_cols=224 Identities=21% Similarity=0.271 Sum_probs=186.6
Q ss_pred HHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeec-cccccc
Q 022615 27 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR-LGVEKS 105 (294)
Q Consensus 27 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~-~~~~k~ 105 (294)
....++.+|.+|++|+++++.+.+.+ .+++.+||||+|.+.+.+...............++.++++|+|+ +.+.||
T Consensus 150 ~~~~~~~ad~vi~~s~~~~~~~~~~~---~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg 226 (396)
T cd03818 150 ILLALAQADAGVSPTRWQRSTFPAEL---RSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRG 226 (396)
T ss_pred hHHHHHhCCEEECCCHHHHhhCcHhh---ccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccC
Confidence 45678999999999999999987754 36899999999999887653221111111111346678999997 999999
Q ss_pred HHHHHHHHHhC----CCcEEEEEcCCc------------cHHHH-Hhhhc---CCCeEEEecccchhHHHHHhcCCEEEe
Q 022615 106 LDFLKRVMDRL----PEARIAFIGDGP------------YREEL-EKMFT---GMPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 106 ~~~l~~~~~~~----~~~~l~i~G~~~------------~~~~~-~~~~~---~~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
++.+++++..+ ++++++|+|++. ..+.+ +++.. ..+|.++|+++++++..+|+.||++++
T Consensus 227 ~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~ 306 (396)
T cd03818 227 FHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVY 306 (396)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEE
Confidence 99999998654 789999999632 12222 23222 347999999999999999999999999
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 245 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 245 (294)
||..|++|.+++||||||+|||+++.++..|++ .++.+|+++++.|+++++++|.+++++++.+.+|++++++.+++
T Consensus 307 ~s~~e~~~~~llEAmA~G~PVIas~~~g~~e~i---~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 307 LTYPFVLSWSLLEAMACGCLVVGSDTAPVREVI---TDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred cCcccccchHHHHHHHCCCCEEEcCCCCchhhc---ccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 88899999999999999999999999999999999999999965
Q ss_pred -CCHHHHHHHHH
Q 022615 246 -YDWRAATRTIR 256 (294)
Q Consensus 246 -~s~~~~~~~~~ 256 (294)
|+|+.++++++
T Consensus 384 ~fs~~~~~~~~~ 395 (396)
T cd03818 384 YDLLSVCLPRQL 395 (396)
T ss_pred hccHHHHHHHHh
Confidence 99999998886
No 9
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=1.1e-33 Score=241.75 Aligned_cols=229 Identities=25% Similarity=0.430 Sum_probs=188.9
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccccc
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 105 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~ 105 (294)
++...+.+++.++++|+++++.+.+.+ +..++.+||||+|...+.+... ...+.... ..++..+++|+|++.+.||
T Consensus 132 ~~~~~~~~~~~ii~~S~~~~~~~~~~~--~~~~i~vIpngvd~~~~~~~~~-~~~~~~~~-~~~~~~~il~~Grl~~~Kg 207 (380)
T PRK15484 132 FEPELLDKNAKIIVPSQFLKKFYEERL--PNADISIVPNGFCLETYQSNPQ-PNLRQQLN-ISPDETVLLYAGRISPDKG 207 (380)
T ss_pred cChhHhccCCEEEEcCHHHHHHHHhhC--CCCCEEEecCCCCHHHcCCcch-HHHHHHhC-CCCCCeEEEEeccCccccC
Confidence 344566789999999999999998764 4568999999999887765422 22222222 2345678999999999999
Q ss_pred HHHHHHHHHhC----CCcEEEEEcCCcc---------HHHHHhhhc--CCCeEEEecccchhHHHHHhcCCEEEeecC-C
Q 022615 106 LDFLKRVMDRL----PEARIAFIGDGPY---------REELEKMFT--GMPAVFTGMLLGEELSQAYASGDVFVMPSE-S 169 (294)
Q Consensus 106 ~~~l~~~~~~~----~~~~l~i~G~~~~---------~~~~~~~~~--~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~-~ 169 (294)
++.+++++..+ |+++|+|+|+|+. .+.+++++. ..++.+.|+++.+++..+|+.||++++||. .
T Consensus 208 ~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~ 287 (380)
T PRK15484 208 ILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVE 287 (380)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCc
Confidence 99999999765 7899999998753 123444433 236899999999999999999999999997 5
Q ss_pred CCcchHHHHHHhcCCCEEeecCCCcccccccCCCCccee-ecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCC
Q 022615 170 ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY-LFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYD 247 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~-~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s 247 (294)
|+||++++|||+||+|||+++.++..|++ .++.+|+ ++++.|+++++++|..+++|++. .++++++++.+ ++|+
T Consensus 288 E~f~~~~lEAma~G~PVI~s~~gg~~Eiv---~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~fs 363 (380)
T PRK15484 288 EAFCMVAVEAMAAGKPVLASTKGGITEFV---LEGITGYHLAEPMTSDSIISDINRTLADPEL-TQIAEQAKDFVFSKYS 363 (380)
T ss_pred cccccHHHHHHHcCCCEEEeCCCCcHhhc---ccCCceEEEeCCCCHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999 8889998 56788999999999999999875 78999999887 6799
Q ss_pred HHHHHHHHHHHHHHHH
Q 022615 248 WRAATRTIRNEQYNAA 263 (294)
Q Consensus 248 ~~~~~~~~~~~l~~~~ 263 (294)
|+.+++++. ++|+..
T Consensus 364 w~~~a~~~~-~~l~~~ 378 (380)
T PRK15484 364 WEGVTQRFE-EQIHNW 378 (380)
T ss_pred HHHHHHHHH-HHHHHh
Confidence 999999998 677654
No 10
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.7e-34 Score=252.16 Aligned_cols=224 Identities=28% Similarity=0.378 Sum_probs=192.0
Q ss_pred cHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccc
Q 022615 22 PMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG 101 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 101 (294)
.++.+.+.+++.||.|+++|+..++.+.+ .+.+++++.+||||+|.+.+.+.... ...++.++|+++|++.
T Consensus 233 ~~~~l~~~~~~~ad~Ii~~s~~~~~~~~~-~g~~~~ki~vIpNgid~~~f~~~~~~--------~~~~~~~~i~~vGrl~ 303 (475)
T cd03813 233 FFESLGRLAYQAADRITTLYEGNRERQIE-DGADPEKIRVIPNGIDPERFAPARRA--------RPEKEPPVVGLIGRVV 303 (475)
T ss_pred HHHHHHHHHHHhCCEEEecCHHHHHHHHH-cCCCHHHeEEeCCCcCHHHcCCcccc--------ccCCCCcEEEEEeccc
Confidence 34567788999999999999999988766 45677899999999999887664321 1234678999999999
Q ss_pred ccccHHHHHHHHHhC----CCcEEEEEcCCcc----HHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEeecCC
Q 022615 102 VEKSLDFLKRVMDRL----PEARIAFIGDGPY----REELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSES 169 (294)
Q Consensus 102 ~~k~~~~l~~~~~~~----~~~~l~i~G~~~~----~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~ 169 (294)
+.||++.++++++.+ |+++++|+|.++. .+.+++++++ .+|.++| .+++.++|+.+|++++||..
T Consensus 304 ~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~~ 380 (475)
T cd03813 304 PIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSIS 380 (475)
T ss_pred cccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCchh
Confidence 999999999998654 7899999998742 3445555542 4689999 58999999999999999999
Q ss_pred CCcchHHHHHHhcCCCEEeecCCCcccccccCCC------CcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Q 022615 170 ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD------GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 243 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~------~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 243 (294)
|++|++++|||+||+|||+|+.++..+++ .+ +.+|+++++.|+++++++|.++++|++.++++++++++.+
T Consensus 381 Eg~p~~vlEAma~G~PVVatd~g~~~elv---~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v 457 (475)
T cd03813 381 EGQPLVILEAMAAGIPVVATDVGSCRELI---EGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRV 457 (475)
T ss_pred hcCChHHHHHHHcCCCEEECCCCChHHHh---cCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 55 5699999999999999999999999999999999999998
Q ss_pred Hh-CCHHHHHHHHHHHHHH
Q 022615 244 EK-YDWRAATRTIRNEQYN 261 (294)
Q Consensus 244 ~~-~s~~~~~~~~~~~l~~ 261 (294)
++ |+|+.+++++. .+|+
T Consensus 458 ~~~~s~~~~~~~y~-~lY~ 475 (475)
T cd03813 458 ERYYTLERMIDSYR-RLYL 475 (475)
T ss_pred HHhCCHHHHHHHHH-HHhC
Confidence 55 99999999998 7874
No 11
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=9.4e-34 Score=245.30 Aligned_cols=228 Identities=16% Similarity=0.238 Sum_probs=186.0
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccccc
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 105 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~ 105 (294)
++++..+.+|.|+++|+++++.+.+.++. ++++.++++|+|...+...... ..++...++++|++.++||
T Consensus 213 l~~~~~~~ad~ii~nS~~t~~~l~~~~~~-~~~i~vvyp~vd~~~~~~~~~~---------~~~~~~~il~vGR~~~~Kg 282 (463)
T PLN02949 213 MYGLVGRCAHLAMVNSSWTKSHIEALWRI-PERIKRVYPPCDTSGLQALPLE---------RSEDPPYIISVAQFRPEKA 282 (463)
T ss_pred HHHHHcCCCCEEEECCHHHHHHHHHHcCC-CCCeEEEcCCCCHHHcccCCcc---------ccCCCCEEEEEEeeeccCC
Confidence 55666688999999999999999887765 3578999999987655322111 1234568999999999999
Q ss_pred HHHHHHHHHhC--------CCcEEEEEcCCcc------HHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEeec
Q 022615 106 LDFLKRVMDRL--------PEARIAFIGDGPY------REELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 106 ~~~l~~~~~~~--------~~~~l~i~G~~~~------~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
++.+++++..+ ++++|+|+|++.. .+.+++++.+ .+|.|.|.++.+++.++|+.||++++|+
T Consensus 283 ~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s 362 (463)
T PLN02949 283 HALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSM 362 (463)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCC
Confidence 99999998752 5799999998632 2345555553 3699999999999999999999999999
Q ss_pred CCCCcchHHHHHHhcCCCEEeecCCCcc-cccccCCCCcceeecCCCCHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHh
Q 022615 168 ESETLGLVVLEAMSSGIPVVGVRAGGIP-DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEK 245 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~~~~~~~-e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~ 245 (294)
..|+||++++|||++|+|||+++.+|.. +++.+...+.+|++++ |+++++++|.++++ +++.+++|++++++.+++
T Consensus 363 ~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 363 IDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred ccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754 6662212266888875 99999999999998 567888999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 022615 246 YDWRAATRTIRNEQYNAAIWF 266 (294)
Q Consensus 246 ~s~~~~~~~~~~~l~~~~~~~ 266 (294)
|||+.+++++. ..+++++++
T Consensus 441 FS~e~~~~~~~-~~i~~l~~~ 460 (463)
T PLN02949 441 FSEQRFNEDFK-DAIRPILNS 460 (463)
T ss_pred cCHHHHHHHHH-HHHHHHHhh
Confidence 99999999998 677777654
No 12
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2e-33 Score=239.31 Aligned_cols=247 Identities=45% Similarity=0.737 Sum_probs=206.5
Q ss_pred cccccceeccccCCCcccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHH
Q 022615 3 YHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRW 82 (294)
Q Consensus 3 ~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~ 82 (294)
+|..++.+.......+..+..+.+.+++++.+|.++++|+.+.+.+.+.+ ..++.++++|+|...+.+.......+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~ 190 (364)
T cd03814 114 YHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELRARG---FRRVRLWPRGVDTELFHPRRRDEALRA 190 (364)
T ss_pred EecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhccC---CCceeecCCCccccccCcccccHHHHH
Confidence 34444444433333444444467888999999999999999999766543 358899999999988876544333332
Q ss_pred HhhcCCCCCceEEEeecccccccHHHHHHHHHhCC---CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc
Q 022615 83 RLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP---EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 83 ~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~---~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 159 (294)
... ..+.+.++|+|++.+.||++.++++++.+. +++++++|.++....++ ....+|.+.|+++.+++.++|+.
T Consensus 191 ~~~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~--~~~~~v~~~g~~~~~~~~~~~~~ 266 (364)
T cd03814 191 RLG--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPARARLE--ARYPNVHFLGFLDGEELAAAYAS 266 (364)
T ss_pred HhC--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHh--ccCCcEEEEeccCHHHHHHHHHh
Confidence 222 345678999999999999999999998874 69999999988776665 23457999999999999999999
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHH
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAA 239 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~ 239 (294)
||++++|+..|++|++++|||+||+|||+++.++..+++ .++.+|+++++.|.++++++|.+++.+++.++++++++
T Consensus 267 ~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i---~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 343 (364)
T cd03814 267 ADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIV---TDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARA 343 (364)
T ss_pred CCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhh---cCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 77899999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHH
Q 022615 240 RQEMEKYDWRAATRTIRNEQY 260 (294)
Q Consensus 240 ~~~~~~~s~~~~~~~~~~~l~ 260 (294)
++.+++|+|+.+++++. .+|
T Consensus 344 ~~~~~~~~~~~~~~~~~-~~~ 363 (364)
T cd03814 344 RAEAERRSWEAFLDNLL-EAY 363 (364)
T ss_pred HHHHhhcCHHHHHHHHH-Hhh
Confidence 99998899999999998 565
No 13
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.7e-33 Score=245.03 Aligned_cols=229 Identities=21% Similarity=0.310 Sum_probs=183.7
Q ss_pred HHHHHHHhCCeEEecchhhH-HHHHHhccCCcCceEEeeccccCCCCCCCccchH---HH--HHhhcCCCCCceEEEeec
Q 022615 26 VIKFLHRAADLTLVPSVAIG-KDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MR--WRLSNGEPDKPLIVHVGR 99 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~-~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~---~~--~~~~~~~~~~~~i~~~G~ 99 (294)
.+++.++.+|.|+++|.... +.+....+.+++++.+||||+|.+.|.+...... .+ .+.....++.++|+++|+
T Consensus 177 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr 256 (439)
T TIGR02472 177 AEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAISR 256 (439)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEcC
Confidence 47788999999999986543 3344444567789999999999998876432211 11 111123345678999999
Q ss_pred ccccccHHHHHHHHHhCC----CcEEE-EEcCCccHHH-----------HHhhhc----CCCeEEEecccchhHHHHHhc
Q 022615 100 LGVEKSLDFLKRVMDRLP----EARIA-FIGDGPYREE-----------LEKMFT----GMPAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~~----~~~l~-i~G~~~~~~~-----------~~~~~~----~~~v~~~g~~~~~~~~~~~~~ 159 (294)
+.+.||++.+++++..++ ..+++ ++|+|+..+. +..++. ..+|.|.|+++.+++.++|+.
T Consensus 257 l~~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~ 336 (439)
T TIGR02472 257 PDRRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRL 336 (439)
T ss_pred CcccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHH
Confidence 999999999999997542 23444 5687654321 222222 235999999999999999998
Q ss_pred C----CEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHH
Q 022615 160 G----DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETM 235 (294)
Q Consensus 160 a----d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~ 235 (294)
| |++++||..|+||++++|||+||+|||+|+.++..|++ .++.+|+++++.|+++++++|.++++|++.++++
T Consensus 337 a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv---~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~ 413 (439)
T TIGR02472 337 AARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDII---ANCRNGLLVDVLDLEAIASALEDALSDSSQWQLW 413 (439)
T ss_pred HhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHh---cCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHH
Confidence 7 99999999999999999999999999999999999999 7889999999999999999999999999999999
Q ss_pred HHHHHHHH-HhCCHHHHHHHHHH
Q 022615 236 GQAARQEM-EKYDWRAATRTIRN 257 (294)
Q Consensus 236 ~~~~~~~~-~~~s~~~~~~~~~~ 257 (294)
++++++.+ ++|||+.+++++.+
T Consensus 414 ~~~a~~~~~~~fsw~~~~~~~~~ 436 (439)
T TIGR02472 414 SRNGIEGVRRHYSWDAHVEKYLR 436 (439)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999987 56999999999984
No 14
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=7e-34 Score=245.08 Aligned_cols=227 Identities=22% Similarity=0.318 Sum_probs=190.2
Q ss_pred HHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCc-eEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccc
Q 022615 23 MWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANK-IRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG 101 (294)
Q Consensus 23 ~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~-i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 101 (294)
..++++++++.+|.|+++|+.+++.+.+.++....+ +.+++||+|.+.+.+..... ........++.++++++|++.
T Consensus 144 ~~~~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~--~~~~~~~~~~~~~i~~~grl~ 221 (392)
T cd03805 144 FDWLEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDP--DPGLLIPKSGKKTFLSINRFE 221 (392)
T ss_pred HHHHHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccc--cccccccCCCceEEEEEeeec
Confidence 456788899999999999999999998876533333 45999999988776543221 111122345678899999999
Q ss_pred ccccHHHHHHHHHhC-------CCcEEEEEcCCccH--------HHHHhhhcC-----CCeEEEecccchhHHHHHhcCC
Q 022615 102 VEKSLDFLKRVMDRL-------PEARIAFIGDGPYR--------EELEKMFTG-----MPAVFTGMLLGEELSQAYASGD 161 (294)
Q Consensus 102 ~~k~~~~l~~~~~~~-------~~~~l~i~G~~~~~--------~~~~~~~~~-----~~v~~~g~~~~~~~~~~~~~ad 161 (294)
+.||++.++++++++ ++++|+++|.++.. +.+++++++ .+|.+.|+++++++..+|+.||
T Consensus 222 ~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad 301 (392)
T cd03805 222 RKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSAR 301 (392)
T ss_pred ccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCe
Confidence 999999999999765 58999999987542 455555544 4699999999999999999999
Q ss_pred EEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 022615 162 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ 241 (294)
Q Consensus 162 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~ 241 (294)
++++||..|++|++++|||+||+|||+++.++..+++ .++.+|+++++ |+++++++|..++++++.++++++++++
T Consensus 302 ~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i---~~~~~g~~~~~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 302 ALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETV---VDGETGFLCEP-TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred EEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHh---ccCCceEEeCC-CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 77889999876 8999999999999999999999999999
Q ss_pred HH-HhCCHHHHHHHH
Q 022615 242 EM-EKYDWRAATRTI 255 (294)
Q Consensus 242 ~~-~~~s~~~~~~~~ 255 (294)
.+ ++|+|+.+++++
T Consensus 378 ~~~~~~s~~~~~~~~ 392 (392)
T cd03805 378 RVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHhcCHHHHhhhC
Confidence 88 569999998764
No 15
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.8e-33 Score=242.57 Aligned_cols=227 Identities=23% Similarity=0.360 Sum_probs=191.2
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE 103 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 103 (294)
.++.++.++++|.++++|....+.+....+.+.+++.+||||+|.+.|.+.... ..++.++++++|++.+.
T Consensus 135 ~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~---------~~~~~~~i~~~grl~~~ 205 (398)
T cd03796 135 NKLLRFSLADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK---------RDNDKITIVVISRLVYR 205 (398)
T ss_pred hHHHHHhhccCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc---------CCCCceEEEEEeccchh
Confidence 356777889999999999999987655455667899999999998877654221 13467899999999999
Q ss_pred ccHHHHHHHHHh----CCCcEEEEEcCCccHHHHHhhhcCC----CeEEEecccchhHHHHHhcCCEEEeecCCCCcchH
Q 022615 104 KSLDFLKRVMDR----LPEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 175 (294)
Q Consensus 104 k~~~~l~~~~~~----~~~~~l~i~G~~~~~~~~~~~~~~~----~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~ 175 (294)
||++.+++++.. .++++|+++|+|+..+.+++++... +|.+.|+++.+++..+|+.||++++||..|++|.+
T Consensus 206 Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~ 285 (398)
T cd03796 206 KGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIA 285 (398)
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHH
Confidence 999999999864 4789999999998777777766543 59999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHHH
Q 022615 176 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRT 254 (294)
Q Consensus 176 ~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 254 (294)
++|||+||+|||+++.++..|++ .++. +++.. .|.++++++|.+++++......+.+++++.+ ++|||+.++++
T Consensus 286 ~~EAma~G~PVI~s~~gg~~e~i---~~~~-~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 360 (398)
T cd03796 286 IVEAASCGLLVVSTRVGGIPEVL---PPDM-ILLAE-PDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKR 360 (398)
T ss_pred HHHHHHcCCCEEECCCCCchhhe---eCCc-eeecC-CCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHH
Confidence 99999999999999999999999 5543 34444 4899999999999987665556777777776 56999999999
Q ss_pred HHHHHHHHHHH
Q 022615 255 IRNEQYNAAIW 265 (294)
Q Consensus 255 ~~~~l~~~~~~ 265 (294)
+. .+|++++.
T Consensus 361 ~~-~~y~~l~~ 370 (398)
T cd03796 361 TE-KVYDRILQ 370 (398)
T ss_pred HH-HHHHHHhc
Confidence 99 89999875
No 16
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=2.3e-33 Score=245.74 Aligned_cols=234 Identities=22% Similarity=0.343 Sum_probs=188.9
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHh-c--------cCCcCceEEeeccccCCCCCCCccc------------------
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAA-R--------VTAANKIRIWKKGVDSESFHPRFRS------------------ 77 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~-~--------~~~~~~i~~i~~gvd~~~~~~~~~~------------------ 77 (294)
.+.+..++.+|.|+++|+..++.+... + ..+.+++.+||||+|.+.|.|....
T Consensus 189 ~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k 268 (466)
T PRK00654 189 SFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENK 268 (466)
T ss_pred cHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHH
Confidence 456778899999999999999888652 1 2346789999999999998775321
Q ss_pred hHHHHHhhcCCCCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCCc--cHHHHHhhhcCC--CeEE-Eecccc
Q 022615 78 SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PAVF-TGMLLG 150 (294)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~~--~~~~~~~~~~~~--~v~~-~g~~~~ 150 (294)
...+.+.+...++.++|+++|++.+.||++.+++++..+ .+++|+|+|.|+ ..+.++++.++. ++.+ .|+ +.
T Consensus 269 ~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~-~~ 347 (466)
T PRK00654 269 RALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGY-DE 347 (466)
T ss_pred HHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeC-CH
Confidence 122333333334678999999999999999999999876 479999999875 345666666543 4554 454 55
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCC------cceeecCCCCHHHHHHHHHH
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG------KIGYLFNPGDLDDCLSKLEP 224 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~------~~g~~~~~~d~~~l~~~i~~ 224 (294)
+.+..+|+.||++++||..|++|++++|||+||+|+|+++.++..|.+ .++ .+|+++++.|+++++++|.+
T Consensus 348 ~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v---~~~~~~~~~~~G~lv~~~d~~~la~~i~~ 424 (466)
T PRK00654 348 ALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTV---IDYNPEDGEATGFVFDDFNAEDLLRALRR 424 (466)
T ss_pred HHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCcccee---ecCCCCCCCCceEEeCCCCHHHHHHHHHH
Confidence 667799999999999999999999999999999999999999999999 666 89999999999999999999
Q ss_pred Hhh---ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 022615 225 LLY---NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 265 (294)
Q Consensus 225 ll~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~ 265 (294)
++. +++.+.+++.++.+ ++|||+.+++++. ++|++++.
T Consensus 425 ~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~lY~~~~~ 465 (466)
T PRK00654 425 ALELYRQPPLWRALQRQAMA--QDFSWDKSAEEYL-ELYRRLLG 465 (466)
T ss_pred HHHHhcCHHHHHHHHHHHhc--cCCChHHHHHHHH-HHHHHHhh
Confidence 876 66667777776653 5799999999998 89998764
No 17
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1e-32 Score=236.08 Aligned_cols=231 Identities=26% Similarity=0.487 Sum_probs=198.7
Q ss_pred HHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccc
Q 022615 23 MWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV 102 (294)
Q Consensus 23 ~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~ 102 (294)
++.+.+..++++|.++++|+.+++.+.+.++ ..+++.++|||+|...+.+.... ..+.+. ...++.++++++|++.+
T Consensus 132 ~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~~i~vi~n~~~~~~~~~~~~~-~~~~~~-~~~~~~~~il~~g~l~~ 208 (371)
T cd04962 132 FQPATRFSIEKSDGVTAVSESLRQETYELFD-ITKEIEVIPNFVDEDRFRPKPDE-ALKRRL-GAPEGEKVLIHISNFRP 208 (371)
T ss_pred chHHHHHHHhhCCEEEEcCHHHHHHHHHhcC-CcCCEEEecCCcCHhhcCCCchH-HHHHhc-CCCCCCeEEEEeccccc
Confidence 4567888999999999999999999988764 45789999999998776553221 222222 23446778999999999
Q ss_pred cccHHHHHHHHHhC---CCcEEEEEcCCccHHHHHhhhcCC----CeEEEecccchhHHHHHhcCCEEEeecCCCCcchH
Q 022615 103 EKSLDFLKRVMDRL---PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 175 (294)
Q Consensus 103 ~k~~~~l~~~~~~~---~~~~l~i~G~~~~~~~~~~~~~~~----~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~ 175 (294)
.||++.+++++..+ .+++++++|.|++.+.+++.+... +|.+.|+. +++.++|+.||++++||..|++|++
T Consensus 209 ~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~v~ps~~E~~~~~ 286 (371)
T cd04962 209 VKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQ--DHVEELLSIADLFLLPSEKESFGLA 286 (371)
T ss_pred ccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCc--ccHHHHHHhcCEEEeCCCcCCCccH
Confidence 99999999999766 368999999998887777766543 59999976 7899999999999999999999999
Q ss_pred HHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHHH
Q 022615 176 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRT 254 (294)
Q Consensus 176 ~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 254 (294)
++|||+||+|||+++.++..+++ .++.+|++++++|.+++++++..++++++.+.++++++++.+ ++|+|+.++++
T Consensus 287 ~~EAma~g~PvI~s~~~~~~e~i---~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 363 (371)
T cd04962 287 ALEAMACGVPVVASNAGGIPEVV---KHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQ 363 (371)
T ss_pred HHHHHHcCCCEEEeCCCCchhhh---cCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999 888999999999999999999999999999999999999995 67999999999
Q ss_pred HHHHHHHH
Q 022615 255 IRNEQYNA 262 (294)
Q Consensus 255 ~~~~l~~~ 262 (294)
+. .+|++
T Consensus 364 ~~-~~y~~ 370 (371)
T cd04962 364 YE-ALYRR 370 (371)
T ss_pred HH-HHHHh
Confidence 99 78875
No 18
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.2e-32 Score=245.86 Aligned_cols=240 Identities=19% Similarity=0.266 Sum_probs=193.4
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhc--------cCCcCceEEeeccccCCCCCCCcc------------------ch
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAAR--------VTAANKIRIWKKGVDSESFHPRFR------------------SS 78 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~--------~~~~~~i~~i~~gvd~~~~~~~~~------------------~~ 78 (294)
.+.+..+-.||.|+++|+..++.+...+ .....++.+|+||+|.+.|.|... ..
T Consensus 685 N~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~ 764 (977)
T PLN02939 685 NVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKA 764 (977)
T ss_pred HHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhH
Confidence 3455566679999999999999987633 245678999999999999987643 12
Q ss_pred HHHHHhhcCC--CCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCCccH---HHHHhhhcC----CCeEEEec
Q 022615 79 EMRWRLSNGE--PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPYR---EELEKMFTG----MPAVFTGM 147 (294)
Q Consensus 79 ~~~~~~~~~~--~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~~~~---~~~~~~~~~----~~v~~~g~ 147 (294)
..+.+.+... ++.++|+++||+.+.||++.+++++..+ ++++|+|+|.|+.. +.++.+... .+|.+.|.
T Consensus 765 aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~ 844 (977)
T PLN02939 765 ALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILK 844 (977)
T ss_pred HHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEec
Confidence 2333443332 3568999999999999999999999765 57999999999653 445554443 35999999
Q ss_pred ccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccC------CCCcceeecCCCCHHHHHHH
Q 022615 148 LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED------QDGKIGYLFNPGDLDDCLSK 221 (294)
Q Consensus 148 ~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~------~~~~~g~~~~~~d~~~l~~~ 221 (294)
++......+|+.||++++||.+|+||++++|||+||+|+|+++.||..+.+.+. .++.+|+++++.|+++++++
T Consensus 845 ~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~A 924 (977)
T PLN02939 845 YDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSA 924 (977)
T ss_pred cCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHH
Confidence 877777899999999999999999999999999999999999999999988321 12578999999999999999
Q ss_pred HHHHhh----ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q 022615 222 LEPLLY----NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFW 267 (294)
Q Consensus 222 i~~ll~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~~ 267 (294)
|.+++. +++.+.+++.++.. +.|||+.+++++. .+|+.++...
T Consensus 925 L~rAL~~~~~dpe~~~~L~~~am~--~dFSWe~~A~qYe-eLY~~ll~~~ 971 (977)
T PLN02939 925 LERAFNYYKRKPEVWKQLVQKDMN--IDFSWDSSASQYE-ELYQRAVARA 971 (977)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHH--hcCCHHHHHHHHH-HHHHHHHHhh
Confidence 998764 78888888876543 5799999999998 8999998653
No 19
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=7.3e-33 Score=252.32 Aligned_cols=235 Identities=17% Similarity=0.257 Sum_probs=193.4
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhcc-CC---------------------cCceEEeeccccCCCCCCCccchH---
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARV-TA---------------------ANKIRIWKKGVDSESFHPRFRSSE--- 79 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~-~~---------------------~~~i~~i~~gvd~~~~~~~~~~~~--- 79 (294)
..++.++..||.||++|...++.+...|+ .+ ..++.|||||+|...|.|......
T Consensus 373 ~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~ 452 (1050)
T TIGR02468 373 EAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGET 452 (1050)
T ss_pred HHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchh
Confidence 46899999999999999999987655543 11 238999999999999987432110
Q ss_pred ----------------HHHHhhcCCCCCceEEEeecccccccHHHHHHHHHhCC------CcEEEEEcCCccH-------
Q 022615 80 ----------------MRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP------EARIAFIGDGPYR------- 130 (294)
Q Consensus 80 ----------------~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~------~~~l~i~G~~~~~------- 130 (294)
...+. ...++.++|+++|++.+.||++.|++|+..++ ++. +|+|.++..
T Consensus 453 ~~~~~~~~~~~~~~~~~l~r~-~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~ 530 (1050)
T TIGR02468 453 EGNEEHPAKPDPPIWSEIMRF-FTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGS 530 (1050)
T ss_pred cccccccccccchhhHHHHhh-cccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccc
Confidence 01111 13456789999999999999999999998763 344 466865432
Q ss_pred ----HHHHhhhcCC----CeEEEecccchhHHHHHhcC----CEEEeecCCCCcchHHHHHHhcCCCEEeecCCCccccc
Q 022615 131 ----EELEKMFTGM----PAVFTGMLLGEELSQAYASG----DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDII 198 (294)
Q Consensus 131 ----~~~~~~~~~~----~v~~~g~~~~~~~~~~~~~a----d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~ 198 (294)
..+.+++... +|.|.|+++++++..+|+.| |++++||..|+||++++||||||+|||+|+.++..+++
T Consensus 531 ~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII 610 (1050)
T TIGR02468 531 SSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIH 610 (1050)
T ss_pred hHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHh
Confidence 2334444433 59999999999999999988 69999999999999999999999999999999999999
Q ss_pred ccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 022615 199 PEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 265 (294)
Q Consensus 199 ~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~ 265 (294)
.++.+|+++++.|+++++++|.++++|++.+++++.++++.+++|+|+.++++++ ..+..+..
T Consensus 611 ---~~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl-~~i~~~~~ 673 (1050)
T TIGR02468 611 ---RVLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYL-SRIASCRP 673 (1050)
T ss_pred ---ccCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHhc
Confidence 8899999999999999999999999999999999999999998899999999999 66666653
No 20
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=1.2e-32 Score=240.72 Aligned_cols=233 Identities=22% Similarity=0.341 Sum_probs=189.9
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhc---------cCCcCceEEeeccccCCCCCCCccc------------------h
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAAR---------VTAANKIRIWKKGVDSESFHPRFRS------------------S 78 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~---------~~~~~~i~~i~~gvd~~~~~~~~~~------------------~ 78 (294)
+.+..+..+|.|+++|+..++.+.+.. ..+.+++.+|+||+|.+.|.|.... .
T Consensus 202 ~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~ 281 (485)
T PRK14099 202 YLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKA 281 (485)
T ss_pred HHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHH
Confidence 578889999999999999999987531 1235789999999999988875432 1
Q ss_pred HHHHHhhcCC-CCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCCc--cHHHHHhhhcCC--Ce-EEEecccc
Q 022615 79 EMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PA-VFTGMLLG 150 (294)
Q Consensus 79 ~~~~~~~~~~-~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~~--~~~~~~~~~~~~--~v-~~~g~~~~ 150 (294)
..+.+.+... ++.++++++|++.+.||++.+++++..+ .+++|+|+|.|+ ..+.++++.+.. ++ .++|+ +
T Consensus 282 ~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~--~ 359 (485)
T PRK14099 282 ALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGY--D 359 (485)
T ss_pred HHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC--C
Confidence 2222333222 3467899999999999999999999876 479999999886 355666665432 44 68887 4
Q ss_pred hhHHHHH-hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCC---------cceeecCCCCHHHHHH
Q 022615 151 EELSQAY-ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG---------KIGYLFNPGDLDDCLS 220 (294)
Q Consensus 151 ~~~~~~~-~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~---------~~g~~~~~~d~~~l~~ 220 (294)
+++..+| +.||++++||..|+||++.+|||+||+|+|+++.++..|.+ .++ .+|+++++.|++++++
T Consensus 360 ~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V---~~~~~~~~~~~~~~G~l~~~~d~~~La~ 436 (485)
T PRK14099 360 EALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTV---VDANEMAIATGVATGVQFSPVTADALAA 436 (485)
T ss_pred HHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCcccee---ecccccccccCCCceEEeCCCCHHHHHH
Confidence 8899887 57999999999999999999999999998889999999988 443 5899999999999999
Q ss_pred HHHH---HhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Q 022615 221 KLEP---LLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWF 266 (294)
Q Consensus 221 ~i~~---ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~ 266 (294)
+|.+ +++|++.+++++++++. ++|||+..+++++ .+|++++..
T Consensus 437 ai~~a~~l~~d~~~~~~l~~~~~~--~~fSw~~~a~~y~-~lY~~l~~~ 482 (485)
T PRK14099 437 ALRKTAALFADPVAWRRLQRNGMT--TDVSWRNPAQHYA-ALYRSLVAE 482 (485)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhhh--hcCChHHHHHHHH-HHHHHHHhh
Confidence 9997 66788889999988863 6799999999998 899998753
No 21
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=1.3e-32 Score=237.49 Aligned_cols=229 Identities=34% Similarity=0.501 Sum_probs=195.0
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE 103 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 103 (294)
...++.+++.+|.++++|+..++.+.+.+..+..++.++|||+|.+.+.+.......+.... ..+++++|+|+|++.+.
T Consensus 154 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gr~~~~ 232 (398)
T cd03800 154 IEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLL-RDPDKPRILAVGRLDPR 232 (398)
T ss_pred hhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhc-cCCCCcEEEEEcccccc
Confidence 35678899999999999999999999887766667999999999887766543322122222 24567899999999999
Q ss_pred ccHHHHHHHHHhCC----CcEEEEEcCCccH------HHHHhhhc----CCCeEEEecccchhHHHHHhcCCEEEeecCC
Q 022615 104 KSLDFLKRVMDRLP----EARIAFIGDGPYR------EELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSES 169 (294)
Q Consensus 104 k~~~~l~~~~~~~~----~~~l~i~G~~~~~------~~~~~~~~----~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~ 169 (294)
||++.+++++..+. +++++++|.+... ..++++.+ ..++.+.|+++.+++..+|+.||++++||..
T Consensus 233 k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~ 312 (398)
T cd03800 233 KGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALY 312 (398)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccc
Confidence 99999999998773 7999999976532 22233332 2469999999999999999999999999999
Q ss_pred CCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCH
Q 022615 170 ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDW 248 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~ 248 (294)
|++|.+++|||+||+|||+++.++..+++ .++.+|+++++.|+++++++|.+++++++.+.++++++++.+ ++|||
T Consensus 313 e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i---~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~ 389 (398)
T cd03800 313 EPFGLTALEAMACGLPVVATAVGGPRDIV---VDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTW 389 (398)
T ss_pred cccCcHHHHHHhcCCCEEECCCCCHHHHc---cCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999 788899999999999999999999999999999999999998 67999
Q ss_pred HHHHHHHH
Q 022615 249 RAATRTIR 256 (294)
Q Consensus 249 ~~~~~~~~ 256 (294)
+.++++++
T Consensus 390 ~~~~~~~~ 397 (398)
T cd03800 390 ERVAARLL 397 (398)
T ss_pred HHHHHHHh
Confidence 99999875
No 22
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=9.8e-33 Score=229.89 Aligned_cols=222 Identities=17% Similarity=0.230 Sum_probs=172.9
Q ss_pred cHHHHHHHH-HHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecc
Q 022615 22 PMWLVIKFL-HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL 100 (294)
Q Consensus 22 ~~~~~~~~~-~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 100 (294)
..+.++.++ .+++|.++++|+.+++.+.+.+...++++.+||||+|.+.|.+.... ..+..++++.|++
T Consensus 82 l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~~~~----------~~~~~vl~~~g~~ 151 (331)
T PHA01630 82 ISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKPKE----------KPHPCVLAILPHS 151 (331)
T ss_pred hhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCCccc----------cCCCEEEEEeccc
Confidence 344677777 78999999999999999987643224689999999999887654221 1244567788889
Q ss_pred cccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHH
Q 022615 101 GVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVV 176 (294)
Q Consensus 101 ~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~ 176 (294)
.+.||++.++++++.+ ++++++++|.+.....+. ... .+.+.++.+++..+|+.||++++||..|+||+++
T Consensus 152 ~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l~----~~~-~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~ 226 (331)
T PHA01630 152 WDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLF----GLN-GVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPV 226 (331)
T ss_pred cccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccchhhc----ccc-ceeccCCHHHHHHHHHhCCEEEECCccccCChHH
Confidence 9999999999999876 579999999765433221 111 1356688999999999999999999999999999
Q ss_pred HHHHhcCCCEEeecCCCcccccccCCCCcceeecCC-------------------CCHHHHHHHHHHHhhCh--H-HHHH
Q 022615 177 LEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP-------------------GDLDDCLSKLEPLLYNQ--E-LRET 234 (294)
Q Consensus 177 ~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~-------------------~d~~~l~~~i~~ll~~~--~-~~~~ 234 (294)
+||||||+|||+|+.++..|++ .++.+|++++. .|.+++++++.+++.++ + .++.
T Consensus 227 lEAMA~G~PVIas~~gg~~E~i---~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~ 303 (331)
T PHA01630 227 IEALALGLDVVVTEKGAWSEWV---LSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKEN 303 (331)
T ss_pred HHHHHcCCCEEEeCCCCchhhc---cCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999 67766555431 26788888898888863 4 4445
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 022615 235 MGQAARQEMEKYDWRAATRTIRNEQYNA 262 (294)
Q Consensus 235 ~~~~~~~~~~~~s~~~~~~~~~~~l~~~ 262 (294)
++.+++...++|||+.+++++. .+|++
T Consensus 304 ~~~~~~~~~~~fs~~~ia~k~~-~l~~~ 330 (331)
T PHA01630 304 LEGRAILYRENYSYNAIAKMWE-KILEK 330 (331)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH-HHHhc
Confidence 5555555568899999999998 67753
No 23
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=7.5e-33 Score=241.91 Aligned_cols=212 Identities=22% Similarity=0.318 Sum_probs=178.7
Q ss_pred HHhCCeEEecchhhHHHHHHhcc---CCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHH
Q 022615 31 HRAADLTLVPSVAIGKDLEAARV---TAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLD 107 (294)
Q Consensus 31 ~~~ad~ii~~s~~~~~~~~~~~~---~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~ 107 (294)
.+.+|.+|++|+..++.+.+.++ .+..++.++|+|++...+.+. ...+...|+++|++.+.||++
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~------------~~r~~~~il~vGrl~~~Kg~~ 335 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE------------QERKPFSIITASRLAKEKHID 335 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc------------cccCCeEEEEEeccccccCHH
Confidence 56789999999999988876543 235689999999865543321 112446899999999999999
Q ss_pred HHHHHHHh----CCCcEEEEEcCCccHHHHHhhhcCC----CeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH
Q 022615 108 FLKRVMDR----LPEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 108 ~l~~~~~~----~~~~~l~i~G~~~~~~~~~~~~~~~----~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea 179 (294)
.+++|+.. .|+++|.|+|.|+..+.+++++... +|.+.|+. ++.++|+.||++++||..||||++++||
T Consensus 336 ~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~Egfgl~~lEA 412 (500)
T TIGR02918 336 WLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTSEGFGLTLMEA 412 (500)
T ss_pred HHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCccccccHHHHHH
Confidence 99999864 4789999999999888888877643 48888864 6889999999999999999999999999
Q ss_pred HhcCCCEEeecCC-CcccccccCCCCcceeecCCC----C----HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHH
Q 022615 180 MSSGIPVVGVRAG-GIPDIIPEDQDGKIGYLFNPG----D----LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRA 250 (294)
Q Consensus 180 ~a~G~pvI~~~~~-~~~e~~~~~~~~~~g~~~~~~----d----~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~ 250 (294)
||||+|||+++.+ +.++++ .++.+|++++++ | +++++++|..++ +++.+.+|++++++.+++|+|+.
T Consensus 413 ma~G~PVI~~dv~~G~~eiI---~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~~~~~~~~~~~a~~~a~~fs~~~ 488 (500)
T TIGR02918 413 VGSGLGMIGFDVNYGNPTFI---EDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-NSNDIDAFHEYSYQIAEGFLTAN 488 (500)
T ss_pred HHhCCCEEEecCCCCCHHHc---cCCCCEEEEeCCccccchhHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999986 889999 899999999842 3 888999999999 45578999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 022615 251 ATRTIRNEQYNA 262 (294)
Q Consensus 251 ~~~~~~~~l~~~ 262 (294)
++++|. .++++
T Consensus 489 v~~~w~-~ll~~ 499 (500)
T TIGR02918 489 IIEKWK-KLVRE 499 (500)
T ss_pred HHHHHH-HHHhh
Confidence 999998 67664
No 24
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=9e-33 Score=241.72 Aligned_cols=237 Identities=17% Similarity=0.265 Sum_probs=192.3
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHh----ccC------CcCceEEeeccccCCCCCCCccch----------------
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAA----RVT------AANKIRIWKKGVDSESFHPRFRSS---------------- 78 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~----~~~------~~~~i~~i~~gvd~~~~~~~~~~~---------------- 78 (294)
.+.+..+..||.|+++|+..++.+.+. ++. ...++.+|+||+|.+.|.|.....
T Consensus 212 n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~ 291 (489)
T PRK14098 212 NMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLEN 291 (489)
T ss_pred cHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHH
Confidence 467788899999999999999998752 222 257899999999999998754211
Q ss_pred --HHHHHhhcC-CCCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCCcc--HHHHHhhhcC--CCeEEEeccc
Q 022615 79 --EMRWRLSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPY--REELEKMFTG--MPAVFTGMLL 149 (294)
Q Consensus 79 --~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~~~--~~~~~~~~~~--~~v~~~g~~~ 149 (294)
..+.+.+.. .++.++|+++|++.+.||++.+++++..+ ++++|+|+|.|+. .+.++++.++ .+|.+.|.++
T Consensus 292 k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~ 371 (489)
T PRK14098 292 KKALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFT 371 (489)
T ss_pred HHHHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 112222222 23568999999999999999999999887 4799999999873 4566666653 3699999999
Q ss_pred chhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCccccccc-CCCCcceeecCCCCHHHHHHHHHHHh--
Q 022615 150 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE-DQDGKIGYLFNPGDLDDCLSKLEPLL-- 226 (294)
Q Consensus 150 ~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~-~~~~~~g~~~~~~d~~~l~~~i~~ll-- 226 (294)
.+++..+|+.||++++||..|++|++.+|||+||+|+|+++.++..+.+.+ ..++.+|+++++.|+++++++|.+++
T Consensus 372 ~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~ 451 (489)
T PRK14098 372 DAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALAL 451 (489)
T ss_pred HHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888821 11367999999999999999999865
Q ss_pred -hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 022615 227 -YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 264 (294)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~ 264 (294)
.+++.+.+++.++. .++|||+..++++. .+|++++
T Consensus 452 ~~~~~~~~~~~~~~~--~~~fsw~~~a~~y~-~lY~~~~ 487 (489)
T PRK14098 452 YHDEERWEELVLEAM--ERDFSWKNSAEEYA-QLYRELL 487 (489)
T ss_pred HcCHHHHHHHHHHHh--cCCCChHHHHHHHH-HHHHHHh
Confidence 57777777766553 25799999999998 8999875
No 25
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=4.1e-33 Score=237.54 Aligned_cols=246 Identities=26% Similarity=0.406 Sum_probs=201.4
Q ss_pred cccccceeccccCCCcccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHH
Q 022615 3 YHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRW 82 (294)
Q Consensus 3 ~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~ 82 (294)
+|+..+...+..........++.+++.+++.+|.++++|+.+++.+.+.++.+..++.++|||+|...+.+..... .
T Consensus 110 ~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~---~ 186 (365)
T cd03809 110 IHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE---V 186 (365)
T ss_pred eccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH---H
Confidence 3443433333333333345667889999999999999999999999998876678999999999988776543222 1
Q ss_pred HhhcCCCCCceEEEeecccccccHHHHHHHHHhCC----CcEEEEEcCCccH-HHHH----hhhcCCCeEEEecccchhH
Q 022615 83 RLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP----EARIAFIGDGPYR-EELE----KMFTGMPAVFTGMLLGEEL 153 (294)
Q Consensus 83 ~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~----~~~l~i~G~~~~~-~~~~----~~~~~~~v~~~g~~~~~~~ 153 (294)
.......+.+.++++|++.+.||++.+++++..++ +++++++|.+... .... +.....+|.+.|+++.+++
T Consensus 187 ~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 266 (365)
T cd03809 187 LRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEEL 266 (365)
T ss_pred HHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHH
Confidence 11223456789999999999999999999998773 4799999975432 2222 2233447999999999999
Q ss_pred HHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHH
Q 022615 154 SQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRE 233 (294)
Q Consensus 154 ~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~ 233 (294)
.++|+.||++++|+..|++|++++|||++|+|||+++.++..+++ +..|+++.+.|.++++++|.++++|++.+.
T Consensus 267 ~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~-----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 341 (365)
T cd03809 267 AALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVA-----GDAALYFDPLDPEALAAAIERLLEDPALRE 341 (365)
T ss_pred HHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCcccee-----cCceeeeCCCCHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999999999999999999998 457888999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Q 022615 234 TMGQAARQEMEKYDWRAATRTIR 256 (294)
Q Consensus 234 ~~~~~~~~~~~~~s~~~~~~~~~ 256 (294)
++++++++.+++|+|+..++++.
T Consensus 342 ~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 342 ELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHh
Confidence 99999998888999999999876
No 26
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=1.3e-32 Score=237.26 Aligned_cols=219 Identities=28% Similarity=0.410 Sum_probs=191.7
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE 103 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 103 (294)
..+.+.+++.+|.++++|+..++.+.+.++...+++.++++|++...+.+.. ..++.+.++++|++.+.
T Consensus 174 ~~~~~~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~-----------~~~~~~~il~~Grl~~~ 242 (407)
T cd04946 174 IPLRRYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISKP-----------SKDDTLRIVSCSYLVPV 242 (407)
T ss_pred hHHHHHHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccccCCC-----------CCCCCEEEEEeeccccc
Confidence 3567778999999999999999999998887778999999999877554321 13456789999999999
Q ss_pred ccHHHHHHHHHhC----C--CcEEEEEcCCccHHHHHhhhcC----CCeEEEecccchhHHHHHhc--CCEEEeecCCCC
Q 022615 104 KSLDFLKRVMDRL----P--EARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYAS--GDVFVMPSESET 171 (294)
Q Consensus 104 k~~~~l~~~~~~~----~--~~~l~i~G~~~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~ 171 (294)
||++.+++++..+ | ++.++++|.|+..+.++++++. .+|.++|+++++++.++|+. +|++++||..||
T Consensus 243 Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg 322 (407)
T cd04946 243 KRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEG 322 (407)
T ss_pred cCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCcccc
Confidence 9999999999776 3 4667889999888888877652 35999999999999999976 789999999999
Q ss_pred cchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCC-CHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHH
Q 022615 172 LGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWR 249 (294)
Q Consensus 172 ~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~ 249 (294)
+|++++|||+||+|||+|+.++..|++ .++.+|+++++. |+++++++|.++++|++.+.+|++++++.+ ++|+|+
T Consensus 323 ~p~~llEAma~G~PVIas~vgg~~e~i---~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~ 399 (407)
T cd04946 323 LPVSIMEAMSFGIPVIATNVGGTPEIV---DNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNAS 399 (407)
T ss_pred ccHHHHHHHHcCCCEEeCCCCCcHHHh---cCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHH
Confidence 999999999999999999999999999 788899988764 899999999999999999999999999998 569999
Q ss_pred HHHHHHH
Q 022615 250 AATRTIR 256 (294)
Q Consensus 250 ~~~~~~~ 256 (294)
...+++.
T Consensus 400 ~~~~~~~ 406 (407)
T cd04946 400 KNYREFA 406 (407)
T ss_pred HhHHHhc
Confidence 9998875
No 27
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.7e-32 Score=232.72 Aligned_cols=226 Identities=21% Similarity=0.268 Sum_probs=185.9
Q ss_pred cccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeec
Q 022615 20 VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR 99 (294)
Q Consensus 20 ~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 99 (294)
...++..++..++.+|.++++|+.+++.+.+.++.+ . .+||||+|...+.+. ....... ..++...++++|+
T Consensus 130 ~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~--~-~~i~ngv~~~~~~~~---~~~~~~~--~~~~~~~i~~~G~ 201 (363)
T cd04955 130 KRYLKFGEKLAVKFADRLIADSPGIKEYLKEKYGRD--S-TYIPYGADHVVSSEE---DEILKKY--GLEPGRYYLLVGR 201 (363)
T ss_pred hHHHHHHHHHHHhhccEEEeCCHHHHHHHHHhcCCC--C-eeeCCCcChhhcchh---hhhHHhc--CCCCCcEEEEEec
Confidence 344566788889999999999999999997777653 2 899999998766541 1111111 2234456889999
Q ss_pred ccccccHHHHHHHHHhCC-CcEEEEEcCCccHHHHHhhh-----cCCCeEEEecccchhHHHHHhcCCEEEeecCC-CCc
Q 022615 100 LGVEKSLDFLKRVMDRLP-EARIAFIGDGPYREELEKMF-----TGMPAVFTGMLLGEELSQAYASGDVFVMPSES-ETL 172 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~~-~~~l~i~G~~~~~~~~~~~~-----~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~-e~~ 172 (294)
+.+.||++.++++++.++ +++|+++|.++....+.+.+ ...+|++.|+++++++.++++.||++++|+.. |++
T Consensus 202 ~~~~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~ 281 (363)
T cd04955 202 IVPENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGT 281 (363)
T ss_pred ccccCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCC
Confidence 999999999999999885 69999999875443333322 23479999999999999999999999999998 999
Q ss_pred chHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hCCHHHH
Q 022615 173 GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAA 251 (294)
Q Consensus 173 ~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~s~~~~ 251 (294)
|++++|||+||+|||+++.++..|++ . .+|.++++.+. ++++|..++++++.+.++++++++.+. +|||+.+
T Consensus 282 ~~~~~EAma~G~PvI~s~~~~~~e~~---~--~~g~~~~~~~~--l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~ 354 (363)
T cd04955 282 NPSLLEAMAYGCPVLASDNPFNREVL---G--DKAIYFKVGDD--LASLLEELEADPEEVSAMAKAARERIREKYTWEKI 354 (363)
T ss_pred ChHHHHHHHcCCCEEEecCCccceee---c--CCeeEecCchH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999998 3 37888887665 999999999999999999999999985 5999999
Q ss_pred HHHHHHHHHH
Q 022615 252 TRTIRNEQYN 261 (294)
Q Consensus 252 ~~~~~~~l~~ 261 (294)
+++++ .+|+
T Consensus 355 ~~~~~-~~y~ 363 (363)
T cd04955 355 ADQYE-ELYK 363 (363)
T ss_pred HHHHH-HHhC
Confidence 99998 6763
No 28
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2e-32 Score=232.90 Aligned_cols=227 Identities=31% Similarity=0.437 Sum_probs=195.4
Q ss_pred ccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEee
Q 022615 19 LVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG 98 (294)
Q Consensus 19 ~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 98 (294)
..+....+++++++.+|.++++|+.+.+.+...+..+ .++.++|||+|...+.+...... .......+.++++|+|
T Consensus 123 ~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~-~~~~~i~~gi~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G 198 (357)
T cd03795 123 LLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRFR-DKVRVIPLGLDPARYPRPDALEE---AIWRRAAGRPFFLFVG 198 (357)
T ss_pred hhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCCc-cceEEecCCCChhhcCCcchhhh---HhhcCCCCCcEEEEec
Confidence 3344567888899999999999999999888766543 78999999999887765432211 1122345678999999
Q ss_pred cccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhc----CCCeEEEecccchhHHHHHhcCCEEEeecC--CCCc
Q 022615 99 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSE--SETL 172 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~----~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~ 172 (294)
++.+.||++.++++++.+++++++++|.|+....+++.++ ..+|.+.|+++++++..+|+.||++++||. .|++
T Consensus 199 ~~~~~K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~ 278 (357)
T cd03795 199 RLVYYKGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAF 278 (357)
T ss_pred ccccccCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCccccccc
Confidence 9999999999999999998999999999988877777663 347999999999999999999999999986 5999
Q ss_pred chHHHHHHhcCCCEEeecCCCcccccccCCC-CcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHH
Q 022615 173 GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRA 250 (294)
Q Consensus 173 ~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~-~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~ 250 (294)
|.+++|||+||+|||+++.++..+.+ .+ +.+|++++++|.++++++|.+++++++.++++++++++.+ ++|||+.
T Consensus 279 g~~~~Ea~~~g~Pvi~~~~~~~~~~i---~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 355 (357)
T cd03795 279 GIVLLEAMAFGKPVISTEIGTGGSYV---NLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADR 355 (357)
T ss_pred chHHHHHHHcCCCEEecCCCCchhHH---hhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHh
Confidence 99999999999999999999999988 55 8899999999999999999999999999999999999998 5699997
Q ss_pred HH
Q 022615 251 AT 252 (294)
Q Consensus 251 ~~ 252 (294)
++
T Consensus 356 ~~ 357 (357)
T cd03795 356 MV 357 (357)
T ss_pred hC
Confidence 63
No 29
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=4.7e-32 Score=233.71 Aligned_cols=223 Identities=23% Similarity=0.283 Sum_probs=183.3
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE 103 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 103 (294)
..+++.+++++|.++++|+..++.+.+.++...+++.++|||+|.+.|.+...... ...++..+++|+|++.+.
T Consensus 163 ~~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~------~~~~~~~~ilf~G~l~~~ 236 (397)
T TIGR03087 163 LAYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPN------PYPPGKRVLVFTGAMDYW 236 (397)
T ss_pred HHHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccC------CCCCCCcEEEEEEecCCc
Confidence 45788999999999999999999998876655678999999999988865422110 012345789999999999
Q ss_pred ccHHHHHH----HH----HhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC-CCCcch
Q 022615 104 KSLDFLKR----VM----DRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGL 174 (294)
Q Consensus 104 k~~~~l~~----~~----~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~-~e~~~~ 174 (294)
||++.++. ++ +..|+++|+|+|.|+. +.++++....+|.+.|++ +++..+|+.||++++|+. .||+|+
T Consensus 237 k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~~~~~l~~~~~V~~~G~v--~~~~~~~~~adv~v~Ps~~~eG~~~ 313 (397)
T TIGR03087 237 PNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS-PAVRALAALPGVTVTGSV--ADVRPYLAHAAVAVAPLRIARGIQN 313 (397)
T ss_pred cCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh-HHHHHhccCCCeEEeeec--CCHHHHHHhCCEEEecccccCCccc
Confidence 99987763 32 2358999999999875 356666666789999999 479999999999999997 689999
Q ss_pred HHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHH
Q 022615 175 VVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATR 253 (294)
Q Consensus 175 ~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~ 253 (294)
+++|||+||+|||+|+.+.. .+. ..+++|+++. +|+++++++|.++++|++.+++|++++++.+ ++|||+..++
T Consensus 314 ~~lEAma~G~PVV~t~~~~~-~i~---~~~~~g~lv~-~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~ 388 (397)
T TIGR03087 314 KVLEAMAMAKPVVASPEAAE-GID---ALPGAELLVA-ADPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLA 388 (397)
T ss_pred HHHHHHHcCCCEEecCcccc-ccc---ccCCcceEeC-CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999987532 233 2355788886 7999999999999999999999999999998 5799999999
Q ss_pred HHHHHHHH
Q 022615 254 TIRNEQYN 261 (294)
Q Consensus 254 ~~~~~l~~ 261 (294)
++. .+++
T Consensus 389 ~~~-~~l~ 395 (397)
T TIGR03087 389 RLD-ALLE 395 (397)
T ss_pred HHH-HHhc
Confidence 998 6664
No 30
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.9e-32 Score=240.94 Aligned_cols=232 Identities=24% Similarity=0.325 Sum_probs=191.5
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHh-cc--------CCcCceEEeeccccCCCCCCCccc------------------
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAA-RV--------TAANKIRIWKKGVDSESFHPRFRS------------------ 77 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~--------~~~~~i~~i~~gvd~~~~~~~~~~------------------ 77 (294)
.+.+..+..+|.|+++|+.+++.+... ++ .++.++.+|+||+|.+.|.|....
T Consensus 197 ~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k 276 (473)
T TIGR02095 197 NFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENK 276 (473)
T ss_pred HHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhH
Confidence 456788999999999999999888652 11 135689999999999988764321
Q ss_pred hHHHHHhhcCC-CCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCCc--cHHHHHhhhcCC--CeEEEecccc
Q 022615 78 SEMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PAVFTGMLLG 150 (294)
Q Consensus 78 ~~~~~~~~~~~-~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~~--~~~~~~~~~~~~--~v~~~g~~~~ 150 (294)
...+.+.+... ++.++|+++|++.+.||++.+++++..+ .+++|+|+|.|+ ..+.++++..+. ++.+.+..+.
T Consensus 277 ~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~ 356 (473)
T TIGR02095 277 EALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDE 356 (473)
T ss_pred HHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCH
Confidence 11222232222 3678999999999999999999999877 369999999984 445666665433 5778888888
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCC------cceeecCCCCHHHHHHHHHH
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG------KIGYLFNPGDLDDCLSKLEP 224 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~------~~g~~~~~~d~~~l~~~i~~ 224 (294)
+++..+|+.||++++||..|++|++++|||+||+|+|+++.++..+.+ .++ .+|+++++.|+++++++|.+
T Consensus 357 ~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v---~~~~~~~~~~~G~l~~~~d~~~la~~i~~ 433 (473)
T TIGR02095 357 ALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTV---VDGDPEAESGTGFLFEEYDPGALLAALSR 433 (473)
T ss_pred HHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceE---ecCCCCCCCCceEEeCCCCHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999 666 89999999999999999999
Q ss_pred Hhh----ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 022615 225 LLY----NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 262 (294)
Q Consensus 225 ll~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~ 262 (294)
++. +++.++++++++.+ ++|||+.+++++. .+|++
T Consensus 434 ~l~~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~~Y~~ 472 (473)
T TIGR02095 434 ALRLYRQDPSLWEALQKNAMS--QDFSWDKSAKQYV-ELYRS 472 (473)
T ss_pred HHHHHhcCHHHHHHHHHHHhc--cCCCcHHHHHHHH-HHHHh
Confidence 887 88888888887753 5799999999999 89876
No 31
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=3.8e-32 Score=231.07 Aligned_cols=219 Identities=33% Similarity=0.524 Sum_probs=194.3
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
..++..++.+|.++++|+.+++.+.+.++.+..++.++|||+|.+.+.+... ....+.+.++|+|++.+.|
T Consensus 122 ~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~---------~~~~~~~~i~~~g~~~~~k 192 (355)
T cd03799 122 IDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPP---------PPPGEPLRILSVGRLVEKK 192 (355)
T ss_pred HHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccc---------cccCCCeEEEEEeeecccc
Confidence 5788889999999999999999999986667789999999999887765420 1234567899999999999
Q ss_pred cHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEeecCC------C
Q 022615 105 SLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSES------E 170 (294)
Q Consensus 105 ~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~------e 170 (294)
|++.++++++.+ ++++++++|.++..+.+.+.+.. .+|.+.|+++.+++..+|+.||++++|+.. |
T Consensus 193 ~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e 272 (355)
T cd03799 193 GLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDRE 272 (355)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCcc
Confidence 999999999876 47999999999887777766553 369999999999999999999999999998 9
Q ss_pred CcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHH
Q 022615 171 TLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWR 249 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~ 249 (294)
++|++++|||++|+|||+++.++..+++ .++.+|++++++|.++++++|.+++++++.+.++++++++.+ ++|+|+
T Consensus 273 ~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~ 349 (355)
T cd03799 273 GLPVVLMEAMAMGLPVISTDVSGIPELV---EDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIR 349 (355)
T ss_pred CccHHHHHHHHcCCCEEecCCCCcchhh---hCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999999999999999999999 778899999999999999999999999999999999999998 569999
Q ss_pred HHHHHH
Q 022615 250 AATRTI 255 (294)
Q Consensus 250 ~~~~~~ 255 (294)
..++++
T Consensus 350 ~~~~~l 355 (355)
T cd03799 350 KQAARL 355 (355)
T ss_pred HHhhcC
Confidence 988753
No 32
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=5.7e-32 Score=232.05 Aligned_cols=223 Identities=19% Similarity=0.243 Sum_probs=183.3
Q ss_pred hCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccch-HHHHHhhc-CCCCCceEEEeecccccccHHHHH
Q 022615 33 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS-EMRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLK 110 (294)
Q Consensus 33 ~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~ 110 (294)
.+| +++.|..+++.+.+.++.+++++.+||||+|...|.+..... ..+..... ..++.++++++|++.+.|+...++
T Consensus 339 ~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI 417 (578)
T PRK15490 339 GVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWI 417 (578)
T ss_pred cch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHH
Confidence 344 677888888999888888999999999999998877643221 11221111 134557899999999999999999
Q ss_pred HHHHh----CCCcEEEEEcCCccHHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhc
Q 022615 111 RVMDR----LPEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 182 (294)
Q Consensus 111 ~~~~~----~~~~~l~i~G~~~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~ 182 (294)
+++.. .|+++|+|+|+|+..+.+++++++ .+|.|.|+. +++..+|+.+|++++||.+|++|++++|||+|
T Consensus 418 ~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~ 495 (578)
T PRK15490 418 DFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMV 495 (578)
T ss_pred HHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHh
Confidence 88754 478999999999988888877664 369999996 89999999999999999999999999999999
Q ss_pred CCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHH---HHHhhChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Q 022615 183 GIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL---EPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNE 258 (294)
Q Consensus 183 G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i---~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ 258 (294)
|+|||+++.++..|++ .++.+|+++++.|.+++++++ ..+....+....+++++++.+ ++|||+.+++++. .
T Consensus 496 GlPVVATdvGG~~EiV---~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~-k 571 (578)
T PRK15490 496 GVPVISTPAGGSAECF---IEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFV-K 571 (578)
T ss_pred CCCEEEeCCCCcHHHc---ccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH-H
Confidence 9999999999999999 889999999999988887776 334445555567889999998 5699999999998 6
Q ss_pred HHHH
Q 022615 259 QYNA 262 (294)
Q Consensus 259 l~~~ 262 (294)
+|.+
T Consensus 572 i~~~ 575 (578)
T PRK15490 572 TIAS 575 (578)
T ss_pred HHHh
Confidence 7754
No 33
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=3.1e-32 Score=243.70 Aligned_cols=223 Identities=17% Similarity=0.193 Sum_probs=184.3
Q ss_pred hCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhc-CCCCCceEEEeecccccccHHHHHH
Q 022615 33 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKR 111 (294)
Q Consensus 33 ~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~ 111 (294)
.++.++++|+..++.+.+.++.+.+++.+||||+|...+.+.......+..... ..++.++|+++|++.+.||++.+++
T Consensus 458 ~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~ 537 (694)
T PRK15179 458 RGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVE 537 (694)
T ss_pred CCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHH
Confidence 345667778888888887777888899999999998877643222211111111 1334678999999999999999999
Q ss_pred HHHh----CCCcEEEEEcCCccHHHHHhhhcCC----CeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcC
Q 022615 112 VMDR----LPEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG 183 (294)
Q Consensus 112 ~~~~----~~~~~l~i~G~~~~~~~~~~~~~~~----~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G 183 (294)
++.. .|+++|+|+|+|+..+.+++++++. +|.|.|+. +++..+|+.+|++++||..|++|++++|||+||
T Consensus 538 A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~--~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G 615 (694)
T PRK15179 538 AAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLS--RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSG 615 (694)
T ss_pred HHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCc--chHHHHHHhcCEEEeccccccchHHHHHHHHcC
Confidence 9865 4789999999999888888877644 59999997 689999999999999999999999999999999
Q ss_pred CCEEeecCCCcccccccCCCCcceeecCCCC--HHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Q 022615 184 IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQY 260 (294)
Q Consensus 184 ~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d--~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~ 260 (294)
+|||+|+.++..|++ .++.+|++++++| .++++++|.+++.+......+++++++.+ ++|||+.+++++. .+|
T Consensus 616 ~PVVat~~gG~~EiV---~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~-~lY 691 (694)
T PRK15179 616 VPVVTTLAGGAGEAV---QEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTV-RCY 691 (694)
T ss_pred CeEEEECCCChHHHc---cCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHH-HHh
Confidence 999999999999999 8899999998776 46889999888876655567788898888 5799999999998 788
Q ss_pred H
Q 022615 261 N 261 (294)
Q Consensus 261 ~ 261 (294)
+
T Consensus 692 ~ 692 (694)
T PRK15179 692 Q 692 (694)
T ss_pred C
Confidence 5
No 34
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=1.2e-31 Score=227.83 Aligned_cols=234 Identities=37% Similarity=0.628 Sum_probs=201.6
Q ss_pred cccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeec
Q 022615 20 VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR 99 (294)
Q Consensus 20 ~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 99 (294)
........+..++.+|.+++.|+.+++.+.+.++.+.+++.++|||++...+.+.. .. .........+.+.++++|+
T Consensus 131 ~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~i~~~g~ 207 (374)
T cd03801 131 LKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP--RA-ARRRLGIPEDEPVILFVGR 207 (374)
T ss_pred HHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc--hH-HHhhcCCcCCCeEEEEecc
Confidence 34455788999999999999999999999998876557999999999988776542 11 1111223446678999999
Q ss_pred ccccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhh----cCCCeEEEecccchhHHHHHhcCCEEEeecCCCC
Q 022615 100 LGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMF----TGMPAVFTGMLLGEELSQAYASGDVFVMPSESET 171 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~----~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~ 171 (294)
+...||++.+++++..+ ++++|+++|.+.....+.+.+ ...+|.+.|+++.+++.++|+.||++++|+..++
T Consensus 208 ~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~ 287 (374)
T cd03801 208 LVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEG 287 (374)
T ss_pred hhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhcc
Confidence 99999999999999776 469999999888777777654 3447999999999999999999999999999999
Q ss_pred cchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHH
Q 022615 172 LGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRA 250 (294)
Q Consensus 172 ~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~ 250 (294)
+|++++|||++|+|||+++.++..+++ .++.+|+++++.|+++++++|.+++.+++.+.++++++++.+ +.|+|+.
T Consensus 288 ~~~~~~Ea~~~g~pvI~~~~~~~~~~~---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (374)
T cd03801 288 FGLVLLEAMAAGLPVVASDVGGIPEVV---EDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDR 364 (374)
T ss_pred ccchHHHHHHcCCcEEEeCCCChhHHh---cCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999 778999999999999999999999999999999999999666 6799999
Q ss_pred HHHHHHHHHH
Q 022615 251 ATRTIRNEQY 260 (294)
Q Consensus 251 ~~~~~~~~l~ 260 (294)
+++++. .+|
T Consensus 365 ~~~~~~-~~~ 373 (374)
T cd03801 365 VAARTE-EVY 373 (374)
T ss_pred HHHHHH-Hhh
Confidence 999998 555
No 35
>PLN02316 synthase/transferase
Probab=100.00 E-value=2.2e-31 Score=243.36 Aligned_cols=235 Identities=21% Similarity=0.277 Sum_probs=189.0
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCC--cCceEEeeccccCCCCCCCccc-------------------hHHHHHh
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTA--ANKIRIWKKGVDSESFHPRFRS-------------------SEMRWRL 84 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~--~~~i~~i~~gvd~~~~~~~~~~-------------------~~~~~~~ 84 (294)
..+..+..+|.|+++|+..++.+...+... ..++.+|+||||.+.|.|.... ...+.+.
T Consensus 754 ~lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~l 833 (1036)
T PLN02316 754 HIGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRL 833 (1036)
T ss_pred HHHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHh
Confidence 456778999999999999999998755433 4799999999999988764221 1122333
Q ss_pred hcCCCCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCCccH---HHHHhhhcC------CCeEEEecccchhH
Q 022615 85 SNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPYR---EELEKMFTG------MPAVFTGMLLGEEL 153 (294)
Q Consensus 85 ~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~~~~---~~~~~~~~~------~~v~~~g~~~~~~~ 153 (294)
+...++.++|+++||+.+.||++.|++++..+ ++++|+|+|.|++. ..++++... .+|.+.+..+....
T Consensus 834 GL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~la 913 (1036)
T PLN02316 834 GLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLS 913 (1036)
T ss_pred CCCcccCeEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHH
Confidence 33323678999999999999999999999876 57999999998653 455555552 25778777644444
Q ss_pred HHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCC-------------CcceeecCCCCHHHHHH
Q 022615 154 SQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD-------------GKIGYLFNPGDLDDCLS 220 (294)
Q Consensus 154 ~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~-------------~~~g~~~~~~d~~~l~~ 220 (294)
..+|+.||++++||.+|+||++.+|||+||+|+|++++||+.+.+ .+ +.+|+++++.|+++++.
T Consensus 914 h~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV---~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~ 990 (1036)
T PLN02316 914 HLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTV---FDVDHDKERAQAQGLEPNGFSFDGADAAGVDY 990 (1036)
T ss_pred HHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhc---cccccccccccccccCCceEEeCCCCHHHHHH
Confidence 589999999999999999999999999999999999999999999 44 36899999999999999
Q ss_pred HHHHHhhC-hHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Q 022615 221 KLEPLLYN-QELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAI 264 (294)
Q Consensus 221 ~i~~ll~~-~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~~~~~ 264 (294)
+|.+++.+ ++....++..+++.+ ++|||+..+.+++ .+|+.+.
T Consensus 991 AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~-~LY~~a~ 1035 (1036)
T PLN02316 991 ALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYM-ELYHSAR 1035 (1036)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHh
Confidence 99999986 344566677777776 4699999999999 8998874
No 36
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=6.8e-32 Score=229.34 Aligned_cols=209 Identities=26% Similarity=0.399 Sum_probs=180.9
Q ss_pred cHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccc
Q 022615 22 PMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG 101 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 101 (294)
.++.+++..++++|.++++|+.+++.+.+.++. +..+++||+|.+.+.+.. .....++++|++.
T Consensus 142 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~---~~~vi~~~~d~~~~~~~~-------------~~~~~il~~G~~~ 205 (351)
T cd03804 142 YLRIWDRRSAARVDYFIANSRFVARRIKKYYGR---DATVIYPPVDTDRFTPAE-------------EKEDYYLSVGRLV 205 (351)
T ss_pred HHHHHHHHHhcCCCEEEECCHHHHHHHHHHhCC---CcEEECCCCCHhhcCcCC-------------CCCCEEEEEEcCc
Confidence 345567788899999999999999999887643 568999999988775532 2345699999999
Q ss_pred ccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHh
Q 022615 102 VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 181 (294)
Q Consensus 102 ~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a 181 (294)
+.||++.++++++.++ ++|+|+|.|+..+.+++ ....+|++.|+++++++.++|+.||++++|+. |++|++++|||+
T Consensus 206 ~~K~~~~li~a~~~~~-~~l~ivG~g~~~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama 282 (351)
T cd03804 206 PYKRIDLAIEAFNKLG-KRLVVIGDGPELDRLRA-KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMA 282 (351)
T ss_pred cccChHHHHHHHHHCC-CcEEEEECChhHHHHHh-hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHH
Confidence 9999999999999998 99999999988777776 34558999999999999999999999999999 999999999999
Q ss_pred cCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 022615 182 SGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 255 (294)
Q Consensus 182 ~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 255 (294)
||+|||+++.++..+++ .++.+|++++++|+++++++|..++++++ .+.+.+.+.+++|+|++..+++
T Consensus 283 ~G~Pvi~~~~~~~~e~i---~~~~~G~~~~~~~~~~la~~i~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 350 (351)
T cd03804 283 SGTPVIAYGKGGALETV---IDGVTGILFEEQTVESLAAAVERFEKNED---FDPQAIRAHAERFSESRFREKI 350 (351)
T ss_pred cCCCEEEeCCCCCccee---eCCCCEEEeCCCCHHHHHHHHHHHHhCcc---cCHHHHHHHHHhcCHHHHHHHh
Confidence 99999999999999999 78899999999999999999999999874 2344455556779999988775
No 37
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=8.2e-32 Score=232.77 Aligned_cols=229 Identities=19% Similarity=0.273 Sum_probs=185.7
Q ss_pred cccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHH----------------
Q 022615 20 VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR---------------- 83 (294)
Q Consensus 20 ~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~---------------- 83 (294)
.+..+++++++++.+|.|+++|+.+++.+.+ ++.+++++.+||||. ...|.+..........
T Consensus 147 ~~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~-~~~~~~ki~vI~Ng~-~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (415)
T cd03816 147 VRLAKWYEKLFGRLADYNLCVTKAMKEDLQQ-FNNWKIRATVLYDRP-PEQFRPLPLEEKHELFLKLAKTFLTRELRIGA 224 (415)
T ss_pred HHHHHHHHHHHhhcCCEeeecCHHHHHHHHh-hhccCCCeeecCCCC-HHHceeCcHHHHHHHHHhcccccccccccccc
Confidence 3456788999999999999999999999987 567789999999995 4455544322111110
Q ss_pred hhcCCCCCceEEEeecccccccHHHHHHHHHhC----------CCcEEEEEcCCccHHHHHhhhcCC---CeEEE-eccc
Q 022615 84 LSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----------PEARIAFIGDGPYREELEKMFTGM---PAVFT-GMLL 149 (294)
Q Consensus 84 ~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~----------~~~~l~i~G~~~~~~~~~~~~~~~---~v~~~-g~~~ 149 (294)
.....++..+++++|++.+.||++.+++|++.+ |+++|+|+|+|+..+.+++++++. ++.+. |+++
T Consensus 225 ~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~ 304 (415)
T cd03816 225 VQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLS 304 (415)
T ss_pred ceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCC
Confidence 011233456788899999999999999999764 469999999999988888887754 45554 6899
Q ss_pred chhHHHHHhcCCEEEeecC---CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 150 GEELSQAYASGDVFVMPSE---SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 150 ~~~~~~~~~~ad~~l~ps~---~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
.+++.++|+.||++++|+. .+++|++++||||||+|||+++.++..|++ +++.+|++++ |+++++++|..++
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv---~~~~~G~lv~--d~~~la~~i~~ll 379 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELV---KHGENGLVFG--DSEELAEQLIDLL 379 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHh---cCCCCEEEEC--CHHHHHHHHHHHH
Confidence 9999999999999987532 477999999999999999999999999999 8899999985 8999999999999
Q ss_pred hC---hHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 022615 227 YN---QELRETMGQAARQEMEKYDWRAATRTIR 256 (294)
Q Consensus 227 ~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 256 (294)
+| ++.+++|++++++.. +++|++...+++
T Consensus 380 ~~~~~~~~~~~m~~~~~~~~-~~~~~~~~~~~~ 411 (415)
T cd03816 380 SNFPNRGKLNSLKKGAQEES-ELRWDENWDRVV 411 (415)
T ss_pred hcCCCHHHHHHHHHHHHHhh-hcCHHHHHHHHh
Confidence 98 899999999999887 567776655544
No 38
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=5e-31 Score=224.15 Aligned_cols=235 Identities=30% Similarity=0.416 Sum_probs=195.6
Q ss_pred cccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEe
Q 022615 18 WLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHV 97 (294)
Q Consensus 18 ~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 97 (294)
+.......+.+.+.+.+|.++++|....+.+.+. +.+.+++.++|||+|...+.+.........+.....++.+.++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 199 (365)
T cd03807 121 KSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAI-GYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIV 199 (365)
T ss_pred hhHhHHHHHHHHhccccCeEEeccHHHHHHHHHc-CCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEe
Confidence 3344556778888899999999999999999886 456679999999999887765433322221222233567789999
Q ss_pred ecccccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhc-C----CCeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 98 GRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFT-G----MPAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 98 G~~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~-~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
|++.+.||++.++++++.+ ++++|+++|.++.......... . .++.+.|.. +++..+|+.||++++|+.
T Consensus 200 G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~ps~ 277 (365)
T cd03807 200 ARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGER--SDVPALLNALDVFVLSSL 277 (365)
T ss_pred cccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEcccc--ccHHHHHHhCCEEEeCCc
Confidence 9999999999999998765 5799999999876665555544 2 358888865 889999999999999999
Q ss_pred CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hCC
Q 022615 169 SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYD 247 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~s 247 (294)
.|++|++++|||+||+|||+++.++..+++ .+ +|++++++|.++++++|..++++++.+.++++++++.++ +|+
T Consensus 278 ~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~---~~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s 352 (365)
T cd03807 278 SEGFPNVLLEAMACGLPVVATDVGDNAELV---GD--TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFS 352 (365)
T ss_pred cccCCcHHHHHHhcCCCEEEcCCCChHHHh---hc--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999 44 899999999999999999999999999999999999984 699
Q ss_pred HHHHHHHHHHHHHH
Q 022615 248 WRAATRTIRNEQYN 261 (294)
Q Consensus 248 ~~~~~~~~~~~l~~ 261 (294)
|+..++++. .+|+
T Consensus 353 ~~~~~~~~~-~~y~ 365 (365)
T cd03807 353 IEAMVEAYE-ELYR 365 (365)
T ss_pred HHHHHHHHH-HHhC
Confidence 999999998 6763
No 39
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=6e-31 Score=224.16 Aligned_cols=231 Identities=37% Similarity=0.625 Sum_probs=198.0
Q ss_pred cHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccc
Q 022615 22 PMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG 101 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 101 (294)
..+.+++.+++++|.++++|+.+++.+.+.+ .+..++.++|||+|...+.+...... .......+.+.++++|++.
T Consensus 137 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~g~~~ 212 (377)
T cd03798 137 LLRALLRRALRRADAVIAVSEALADELKALG-IDPEKVTVIPNGVDTERFSPADRAEA---RKLGLPEDKKVILFVGRLV 212 (377)
T ss_pred hHHHHHHHHHhcCCeEEeCCHHHHHHHHHhc-CCCCceEEcCCCcCcccCCCcchHHH---HhccCCCCceEEEEeccCc
Confidence 3567889999999999999999999999875 56789999999999988766533221 1112344678899999999
Q ss_pred ccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhc----CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcc
Q 022615 102 VEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 173 (294)
Q Consensus 102 ~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~----~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~ 173 (294)
+.||++.++++++.+ ++++++++|.++..+.+.+..+ ..+|.+.|+++++++.++|+.||++++|+..+++|
T Consensus 213 ~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~ 292 (377)
T cd03798 213 PRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFG 292 (377)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCC
Confidence 999999999999876 3799999999887777776654 34799999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHH
Q 022615 174 LVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAAT 252 (294)
Q Consensus 174 ~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~ 252 (294)
++++|||++|+|||+++.++..+++ .++..|+++++.|.++++++|.+++++++. ++..++++.+ ++|+|+..+
T Consensus 293 ~~~~Ea~~~G~pvI~~~~~~~~~~~---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~ 367 (377)
T cd03798 293 LVLLEAMACGLPVVATDVGGIPEII---TDGENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVA 367 (377)
T ss_pred hHHHHHHhcCCCEEEecCCChHHHh---cCCcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999 778889999999999999999999998876 6666666666 679999999
Q ss_pred HHHHHHHHHH
Q 022615 253 RTIRNEQYNA 262 (294)
Q Consensus 253 ~~~~~~l~~~ 262 (294)
+++. .++++
T Consensus 368 ~~~~-~~~~~ 376 (377)
T cd03798 368 ERLL-ELYRE 376 (377)
T ss_pred HHHH-HHHhh
Confidence 9998 67664
No 40
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=100.00 E-value=2.7e-31 Score=227.40 Aligned_cols=210 Identities=26% Similarity=0.389 Sum_probs=182.6
Q ss_pred HHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHHHH
Q 022615 30 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFL 109 (294)
Q Consensus 30 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l 109 (294)
.++++|.++++|+..++.+.+.++.. .++.++|+|++...+.+... ...+...++++|++.+.|+++.+
T Consensus 154 ~~~~~d~ii~~s~~~~~~l~~~~~~~-~~v~~ip~g~~~~~~~~~~~----------~~~~~~~i~~vgrl~~~K~~~~l 222 (372)
T cd04949 154 NLDKVDGVIVATEQQKQDLQKQFGNY-NPIYTIPVGSIDPLKLPAQF----------KQRKPHKIITVARLAPEKQLDQL 222 (372)
T ss_pred ChhhCCEEEEccHHHHHHHHHHhCCC-CceEEEcccccChhhcccch----------hhcCCCeEEEEEccCcccCHHHH
Confidence 35789999999999999999887643 45999999999877655320 12355689999999999999999
Q ss_pred HHHHHhC----CCcEEEEEcCCccHHHHHhhhcCC----CeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHh
Q 022615 110 KRVMDRL----PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 181 (294)
Q Consensus 110 ~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~----~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a 181 (294)
++++..+ |+++|+|+|.|+....+....... +|.+.|+. +++.++|+.||++++||..||+|++++|||+
T Consensus 223 i~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma 300 (372)
T cd04949 223 IKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYT--RDLDEVYQKAQLSLLTSQSEGFGLSLMEALS 300 (372)
T ss_pred HHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCC--CCHHHHHhhhhEEEecccccccChHHHHHHh
Confidence 9998765 789999999998776666655432 58899954 8899999999999999999999999999999
Q ss_pred cCCCEEeecCC-CcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 022615 182 SGIPVVGVRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 255 (294)
Q Consensus 182 ~G~pvI~~~~~-~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 255 (294)
||+|||+++.+ +..+++ .++.+|+++++.|+++++++|..++.+++.++++++++++.+++|+|+.++++|
T Consensus 301 ~G~PvI~~~~~~g~~~~v---~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 301 HGLPVISYDVNYGPSEII---EDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred CCCCEEEecCCCCcHHHc---ccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 99999999987 788999 889999999999999999999999999999999999999998899999998764
No 41
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=9.3e-32 Score=232.27 Aligned_cols=214 Identities=20% Similarity=0.260 Sum_probs=175.1
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
+++++.++.+|.++++|+++++.+.+.++.. +++.+++||+|.+.+.+.... ...+..+|+|+|++.+.|
T Consensus 181 ~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~-~~~~vi~~gvd~~~~~~~~~~---------~~~~~~~il~vgr~~~~K 250 (419)
T cd03806 181 FLYGLAGSFADVVMVNSTWTRNHIRSLWKRN-TKPSIVYPPCDVEELLKLPLD---------EKTRENQILSIAQFRPEK 250 (419)
T ss_pred HHHHHHhhcCCEEEECCHHHHHHHHHHhCcC-CCcEEEcCCCCHHHhcccccc---------cccCCcEEEEEEeecCCC
Confidence 5788999999999999999999999877543 589999999998766543210 123567899999999999
Q ss_pred cHHHHHHHHHhC----C-----CcEEEEEcCCc------cHHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEe
Q 022615 105 SLDFLKRVMDRL----P-----EARIAFIGDGP------YREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 105 ~~~~l~~~~~~~----~-----~~~l~i~G~~~------~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
|++.+++++..+ + +++|+|+|.+. ..+.+++++++ .+|+|+|.++++++..+|+.||++++
T Consensus 251 ~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~ 330 (419)
T cd03806 251 NHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLH 330 (419)
T ss_pred CHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEE
Confidence 999999999765 3 48999999763 23455555543 36999999999999999999999999
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeecCCC-cccccccCC---CCcceeecCCCCHHHHHHHHHHHhhChH-HHHHHHHHHH
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVRAGG-IPDIIPEDQ---DGKIGYLFNPGDLDDCLSKLEPLLYNQE-LRETMGQAAR 240 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~~~~-~~e~~~~~~---~~~~g~~~~~~d~~~l~~~i~~ll~~~~-~~~~~~~~~~ 240 (294)
|+..|+||.+++|||+||+|||+++.++ ..+++ . ++.+|++++ |+++++++|.+++++++ .++.++++++
T Consensus 331 ~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv---~~~~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~~~~~~~ 405 (419)
T cd03806 331 TMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIV---VPWDGGPTGFLAS--TAEEYAEAIEKILSLSEEERLRIRRAAR 405 (419)
T ss_pred CCccCCcccHHHHHHHcCCcEEEEcCCCCchhee---eccCCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999999865 45777 5 688999975 99999999999998655 4455555555
Q ss_pred HHHHhCCHHHHHH
Q 022615 241 QEMEKYDWRAATR 253 (294)
Q Consensus 241 ~~~~~~s~~~~~~ 253 (294)
+..++|||+.+.+
T Consensus 406 ~~~~~fs~~~f~~ 418 (419)
T cd03806 406 SSVKRFSDEEFER 418 (419)
T ss_pred HHHHhhCHHHhcc
Confidence 5557899998753
No 42
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.98 E-value=1.6e-30 Score=222.47 Aligned_cols=226 Identities=21% Similarity=0.302 Sum_probs=176.9
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCC-CCCccc---hHHHHHhhcCCCCCceEEEeec
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF-HPRFRS---SEMRWRLSNGEPDKPLIVHVGR 99 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~-~~~~~~---~~~~~~~~~~~~~~~~i~~~G~ 99 (294)
+.+.+.+++++|.+++++.. .... +.+..++ ++|||+|.... ...... ...+.+. ...++.++|+++|+
T Consensus 126 ~~~~~~~~~~~d~~i~~~~~---~~~~--~~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~vgr 198 (372)
T cd03792 126 WDFLQPYIEDYDAAVFHLPE---YVPP--QVPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKY-GIDPERPYITQVSR 198 (372)
T ss_pred HHHHHHHHHhCCEEeecHHH---hcCC--CCCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHh-CCCCCCcEEEEEec
Confidence 34567788899999998832 2222 2344455 99999997532 111111 1222222 23457789999999
Q ss_pred ccccccHHHHHHHHHhC----CCcEEEEEcCCccH-----HHHHhhh----cCCCeEEEecc--cchhHHHHHhcCCEEE
Q 022615 100 LGVEKSLDFLKRVMDRL----PEARIAFIGDGPYR-----EELEKMF----TGMPAVFTGML--LGEELSQAYASGDVFV 164 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~-----~~~~~~~----~~~~v~~~g~~--~~~~~~~~~~~ad~~l 164 (294)
+.+.||++.+++++..+ ++++|+++|.|+.. +.++++. ...++.+.|.. +.+++..+|+.||+++
T Consensus 199 l~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v 278 (372)
T cd03792 199 FDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVL 278 (372)
T ss_pred cccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEE
Confidence 99999999999998754 67999999988531 1222222 12368888886 8899999999999999
Q ss_pred eecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-
Q 022615 165 MPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM- 243 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~- 243 (294)
+||..||+|++++|||+||+|||+++.++..+.+ .++.+|++++ +.++++++|.+++++++.+++|++++++.+
T Consensus 279 ~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i---~~~~~g~~~~--~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~ 353 (372)
T cd03792 279 QKSIREGFGLTVTEALWKGKPVIAGPVGGIPLQI---EDGETGFLVD--TVEEAAVRILYLLRDPELRRKMGANAREHVR 353 (372)
T ss_pred eCCCccCCCHHHHHHHHcCCCEEEcCCCCchhhc---ccCCceEEeC--CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 7889999887 567888999999999999999999999987
Q ss_pred HhCCHHHHHHHHHHHHHHH
Q 022615 244 EKYDWRAATRTIRNEQYNA 262 (294)
Q Consensus 244 ~~~s~~~~~~~~~~~l~~~ 262 (294)
++|+|+.++++++ .+|+.
T Consensus 354 ~~~s~~~~~~~~~-~~~~~ 371 (372)
T cd03792 354 ENFLITRHLKDYL-YLISK 371 (372)
T ss_pred HHcCHHHHHHHHH-HHHHh
Confidence 5799999999999 67765
No 43
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.98 E-value=2.2e-30 Score=220.61 Aligned_cols=229 Identities=26% Similarity=0.400 Sum_probs=188.4
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE 103 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 103 (294)
.++.+.....++.++++|....+.+.+.+..+.+++.++|||+|...+.+...............++.++++++|++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 200 (360)
T cd04951 121 MLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEA 200 (360)
T ss_pred HHHHHHHhhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEEEeeCchh
Confidence 35556666778999999999999998887677789999999999887765433222222222224567889999999999
Q ss_pred ccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEeecCCCCcchH
Q 022615 104 KSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 175 (294)
Q Consensus 104 k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~ 175 (294)
||++.+++++..+ ++++|+|+|.|+..+.+++.+.. .++.+.|+. +++..+|+.||++++||..|++|++
T Consensus 201 kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~ 278 (360)
T cd04951 201 KDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLV 278 (360)
T ss_pred cCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEeccc--ccHHHHHHhhceEEecccccCCChH
Confidence 9999999999766 47999999999988777776553 368999987 7899999999999999999999999
Q ss_pred HHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh-ChHHHHHHHHHHHHHH-HhCCHHHHHH
Q 022615 176 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEM-EKYDWRAATR 253 (294)
Q Consensus 176 ~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~-~~~s~~~~~~ 253 (294)
++|||++|+|||+++.++..+++ .+ +|+.+.++|.++++++|.++++ +++....++.+ +..+ ++|+|+.+++
T Consensus 279 ~~Ea~a~G~PvI~~~~~~~~e~i---~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 352 (360)
T cd04951 279 VAEAMACELPVVATDAGGVREVV---GD--SGLIVPISDPEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQ 352 (360)
T ss_pred HHHHHHcCCCEEEecCCChhhEe---cC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHH
Confidence 99999999999999999999999 44 7888999999999999999995 55556666655 5555 6799999999
Q ss_pred HHHHHHHH
Q 022615 254 TIRNEQYN 261 (294)
Q Consensus 254 ~~~~~l~~ 261 (294)
++. ++|+
T Consensus 353 ~~~-~~y~ 359 (360)
T cd04951 353 QWL-TLYT 359 (360)
T ss_pred HHH-HHhh
Confidence 999 7875
No 44
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.98 E-value=1e-30 Score=224.13 Aligned_cols=229 Identities=27% Similarity=0.398 Sum_probs=196.2
Q ss_pred ccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecc
Q 022615 21 KPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL 100 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 100 (294)
+..+.+++..++.+|.++++|+.+++.+. ..+.+..++.++|||++...+.+...... + ......++...++++|++
T Consensus 153 ~~~~~~~~~~~~~~d~vi~~s~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~i~~~G~~ 229 (394)
T cd03794 153 RLLRKLERLIYRRADAIVVISPGMREYLV-RRGVPPEKISVIPNGVDLELFKPPPADES-L-RKELGLDDKFVVLYAGNI 229 (394)
T ss_pred HHHHHHHHHHHhcCCEEEEECHHHHHHHH-hcCCCcCceEEcCCCCCHHHcCCccchhh-h-hhccCCCCcEEEEEecCc
Confidence 45667889999999999999999999998 45566789999999999887765432221 1 111234567889999999
Q ss_pred cccccHHHHHHHHHhCC---CcEEEEEcCCccHHHHHhhhc---CCCeEEEecccchhHHHHHhcCCEEEeecCCCCc--
Q 022615 101 GVEKSLDFLKRVMDRLP---EARIAFIGDGPYREELEKMFT---GMPAVFTGMLLGEELSQAYASGDVFVMPSESETL-- 172 (294)
Q Consensus 101 ~~~k~~~~l~~~~~~~~---~~~l~i~G~~~~~~~~~~~~~---~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~-- 172 (294)
...||++.+++++..+. +++++++|.|+..+.+.+.+. ..++.+.|+++.+++.++|+.||++++|+..+++
T Consensus 230 ~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~ 309 (394)
T cd03794 230 GRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFE 309 (394)
T ss_pred ccccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCccccc
Confidence 99999999999998773 799999999988777776432 3479999999999999999999999999987754
Q ss_pred ---chHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hCCH
Q 022615 173 ---GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDW 248 (294)
Q Consensus 173 ---~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~s~ 248 (294)
|++++|||+||+|||+++.++..+++ .++.+|+++++.|.++++++|.+++.|++.++++++++++.+. +|+|
T Consensus 310 ~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~ 386 (394)
T cd03794 310 GVSPSKLFEYMAAGKPVLASVDGESAELV---EEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSR 386 (394)
T ss_pred ccCchHHHHHHHCCCcEEEecCCCchhhh---ccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcH
Confidence 88899999999999999999999999 6778999999999999999999999999999999999999986 7999
Q ss_pred HHHHHHH
Q 022615 249 RAATRTI 255 (294)
Q Consensus 249 ~~~~~~~ 255 (294)
+.+++++
T Consensus 387 ~~~~~~~ 393 (394)
T cd03794 387 EKLAERL 393 (394)
T ss_pred HHHHHhc
Confidence 9999876
No 45
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.98 E-value=5.6e-30 Score=229.16 Aligned_cols=236 Identities=22% Similarity=0.344 Sum_probs=181.4
Q ss_pred HHHHHHhCCeEEecchhhHH----HHHHh-----------c----cC--CcCceEEeeccccCCCCCCCccchHH-----
Q 022615 27 IKFLHRAADLTLVPSVAIGK----DLEAA-----------R----VT--AANKIRIWKKGVDSESFHPRFRSSEM----- 80 (294)
Q Consensus 27 ~~~~~~~ad~ii~~s~~~~~----~~~~~-----------~----~~--~~~~i~~i~~gvd~~~~~~~~~~~~~----- 80 (294)
+..+++.||.||+.|..... .+.++ + |+ +..|+.+||+|+|...|.|.......
T Consensus 446 e~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~ 525 (784)
T TIGR02470 446 DLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLH 525 (784)
T ss_pred HHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhh
Confidence 55788899999999965422 22211 1 11 45689999999999988775432211
Q ss_pred -------------HHHhhc-CCCCCceEEEeecccccccHHHHHHHHHhC----CCcEEEEEcCCcc------------H
Q 022615 81 -------------RWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPY------------R 130 (294)
Q Consensus 81 -------------~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~------------~ 130 (294)
+...+. ..+++++|+++||+.+.||++.+++++.++ ++++|+|+|.+.. .
T Consensus 526 ~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i 605 (784)
T TIGR02470 526 PEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEI 605 (784)
T ss_pred cchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHH
Confidence 111221 245678999999999999999999999765 3588999997642 1
Q ss_pred HHHHhhhcCC----CeEEEecc-cchhHHHHHh----cCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccC
Q 022615 131 EELEKMFTGM----PAVFTGML-LGEELSQAYA----SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED 201 (294)
Q Consensus 131 ~~~~~~~~~~----~v~~~g~~-~~~~~~~~~~----~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~ 201 (294)
+.+.+++.+. +|.+.|+. +..+..++|+ .+|++++||.+|+||++++|||+||+|||+|+.||..|++
T Consensus 606 ~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV--- 682 (784)
T TIGR02470 606 EKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEII--- 682 (784)
T ss_pred HHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHh---
Confidence 2334444433 59999975 5556666654 3579999999999999999999999999999999999999
Q ss_pred CCCcceeecCCCCHHHHHHHHHHHh----hChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHH
Q 022615 202 QDGKIGYLFNPGDLDDCLSKLEPLL----YNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFW 267 (294)
Q Consensus 202 ~~~~~g~~~~~~d~~~l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~~~~~~~~ 267 (294)
.++.+|+++++.|+++++++|..++ .|++.++++++++++.+ ++|||+.+++++++ +. .+...|
T Consensus 683 ~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~-l~-~~~~~~ 751 (784)
T TIGR02470 683 QDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLT-LA-GIYGFW 751 (784)
T ss_pred cCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HH-hhhhHh
Confidence 8899999999999999999999876 68999999999999997 67999999999984 43 443444
No 46
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.97 E-value=1.2e-30 Score=226.53 Aligned_cols=233 Identities=18% Similarity=0.150 Sum_probs=177.3
Q ss_pred ccccccceeccccCCCcccccHHHHHHHHHHh--CCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchH
Q 022615 2 SYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA--ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE 79 (294)
Q Consensus 2 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~ 79 (294)
+|||+++.|+..+...++......+...++.. ||.|+++|..+.+ +. . .+....||||.+.|.+......
T Consensus 465 syHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~-L~------~-~vI~nVnGVDte~F~P~~r~~~ 536 (794)
T PLN02501 465 VVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHKVLRLSAATQD-LP------K-SVICNVHGVNPKFLKIGEKVAE 536 (794)
T ss_pred EEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHH-hc------c-cceeecccccccccCCcchhHH
Confidence 69999999998887777666444233333333 8999999977773 31 1 2222237999999987644222
Q ss_pred HHHHhhcCCCCCceEEEeecccccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcCCC--eEEEecccchhH
Q 022615 80 MRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEEL 153 (294)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~~~~~~ 153 (294)
..... .......++|+|++.+.||++.|++++..+ ++++|+|+|+|+..+.+++++.+.+ +.|+|.. ++.
T Consensus 537 -~r~lg-i~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~--dd~ 612 (794)
T PLN02501 537 -ERELG-QQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGR--DHA 612 (794)
T ss_pred -HHhcC-CccccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCC--CCH
Confidence 22221 111224589999999999999999998754 6899999999999999988877554 7778776 667
Q ss_pred HHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHH
Q 022615 154 SQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRE 233 (294)
Q Consensus 154 ~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~ 233 (294)
..+|+.+|++++||..|++|++++||||||+|||+++.++. +++ .++.+|+.. +|.++++++|.+++.++....
T Consensus 613 ~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~-e~V---~~g~nGll~--~D~EafAeAI~~LLsd~~~rl 686 (794)
T PLN02501 613 DDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSN-EFF---RSFPNCLTY--KTSEDFVAKVKEALANEPQPL 686 (794)
T ss_pred HHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCC-ceE---eecCCeEec--CCHHHHHHHHHHHHhCchhhh
Confidence 78999999999999999999999999999999999999875 446 567777765 589999999999999876433
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q 022615 234 TMGQAARQEMEKYDWRAATRTIRN 257 (294)
Q Consensus 234 ~~~~~~~~~~~~~s~~~~~~~~~~ 257 (294)
.+.. ...+||+.+++++++
T Consensus 687 ~~~a-----~~~~SWeAaadrLle 705 (794)
T PLN02501 687 TPEQ-----RYNLSWEAATQRFME 705 (794)
T ss_pred HHHH-----HhhCCHHHHHHHHHH
Confidence 2221 348999999999994
No 47
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.97 E-value=1.5e-30 Score=221.52 Aligned_cols=217 Identities=22% Similarity=0.295 Sum_probs=180.9
Q ss_pred HHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccc--ccccHHH
Q 022615 31 HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG--VEKSLDF 108 (294)
Q Consensus 31 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~--~~k~~~~ 108 (294)
+..+|.++++|+.+++.+.+. +.+.+++.++|||+|.+.+..... ...+.++++++|++. +.||++.
T Consensus 131 ~~~~d~~i~~S~~~~~~~~~~-~~~~~ki~vi~N~id~~~~~~~~~----------~~~~~~~i~~~Grl~~~~~k~~~~ 199 (359)
T PRK09922 131 ITCADYHLAISSGIKEQMMAR-GISAQRISVIYNPVEIKTIIIPPP----------ERDKPAVFLYVGRLKFEGQKNVKE 199 (359)
T ss_pred hhcCCEEEEcCHHHHHHHHHc-CCCHHHEEEEcCCCCHHHccCCCc----------ccCCCcEEEEEEEEecccCcCHHH
Confidence 478999999999999999875 566779999999999654322111 123467899999986 4599999
Q ss_pred HHHHHHhC-CCcEEEEEcCCccHHHHHhhhcC----CCeEEEecccc--hhHHHHHhcCCEEEeecCCCCcchHHHHHHh
Q 022615 109 LKRVMDRL-PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLG--EELSQAYASGDVFVMPSESETLGLVVLEAMS 181 (294)
Q Consensus 109 l~~~~~~~-~~~~l~i~G~~~~~~~~~~~~~~----~~v~~~g~~~~--~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a 181 (294)
+++++..+ ++++|+++|+|++.+.++++++. .+|.++|+++. +++.++|+.+|++++||..||+|++++||||
T Consensus 200 l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma 279 (359)
T PRK09922 200 LFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMS 279 (359)
T ss_pred HHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHH
Confidence 99999887 47999999999988888887764 36999999855 7899999999999999999999999999999
Q ss_pred cCCCEEeec-CCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 022615 182 SGIPVVGVR-AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 260 (294)
Q Consensus 182 ~G~pvI~~~-~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~ 260 (294)
||+|||+++ .++..|++ .++.+|++++++|+++++++|.+++++++.+. .....+.+++|+-+...+++. .+|
T Consensus 280 ~G~Pvv~s~~~~g~~eiv---~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~ 353 (359)
T PRK09922 280 YGIPCISSDCMSGPRDII---KPGLNGELYTPGNIDEFVGKLNKVISGEVKYQ--HDAIPNSIERFYEVLYFKNLN-NAL 353 (359)
T ss_pred cCCCEEEeCCCCChHHHc---cCCCceEEECCCCHHHHHHHHHHHHhCcccCC--HHHHHHHHHHhhHHHHHHHHH-HHH
Confidence 999999999 89999999 88999999999999999999999999987541 223334457788899999998 677
Q ss_pred HHHH
Q 022615 261 NAAI 264 (294)
Q Consensus 261 ~~~~ 264 (294)
+.+.
T Consensus 354 ~~~~ 357 (359)
T PRK09922 354 FSKL 357 (359)
T ss_pred HHHh
Confidence 7654
No 48
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.97 E-value=2e-30 Score=220.53 Aligned_cols=220 Identities=25% Similarity=0.376 Sum_probs=182.3
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHH---HHHhhcCCCCCceEEEeecccc
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEM---RWRLSNGEPDKPLIVHVGRLGV 102 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~G~~~~ 102 (294)
+.+.+++++|.++++|+.+++.+.+.++.+.+++.++|||+|...+.+....... ..+.....++.++++++|++.+
T Consensus 117 ~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~ 196 (355)
T cd03819 117 RYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTR 196 (355)
T ss_pred HHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeecccc
Confidence 5567788999999999999999997788888899999999999887654322111 1111123456778999999999
Q ss_pred cccHHHHHHHHHhC----CCcEEEEEcCCccHHHH----Hhhhc----CCCeEEEecccchhHHHHHhcCCEEEeec-CC
Q 022615 103 EKSLDFLKRVMDRL----PEARIAFIGDGPYREEL----EKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPS-ES 169 (294)
Q Consensus 103 ~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~----~~~~~----~~~v~~~g~~~~~~~~~~~~~ad~~l~ps-~~ 169 (294)
.||++.+++++..+ ++++++++|.++..+.+ .+.+. ..+|.+.|+ .+++.++|+.||++++|| ..
T Consensus 197 ~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~ 274 (355)
T cd03819 197 WKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEP 274 (355)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCC
Confidence 99999999999876 46999999987654333 22222 236999999 489999999999999999 79
Q ss_pred CCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHh-hChHHHHHHHHHHHHHH-HhCC
Q 022615 170 ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL-YNQELRETMGQAARQEM-EKYD 247 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~-~~~s 247 (294)
|++|++++|||+||+|||+++.++..+++ .++.+|++++++|.++++++|..++ .+++.+.++++++++.+ ++|+
T Consensus 275 e~~~~~l~EA~a~G~PvI~~~~~~~~e~i---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~ 351 (355)
T cd03819 275 EAFGRTAVEAQAMGRPVIASDHGGARETV---RPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFS 351 (355)
T ss_pred CCCchHHHHHHhcCCCEEEcCCCCcHHHH---hCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999 7788999999999999999997555 48899999999999998 4699
Q ss_pred HHH
Q 022615 248 WRA 250 (294)
Q Consensus 248 ~~~ 250 (294)
|+.
T Consensus 352 ~~~ 354 (355)
T cd03819 352 YDR 354 (355)
T ss_pred hcc
Confidence 975
No 49
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=4.3e-30 Score=219.04 Aligned_cols=226 Identities=25% Similarity=0.356 Sum_probs=184.1
Q ss_pred cHHHHHHHHHHhCCeEEecc-hhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecc
Q 022615 22 PMWLVIKFLHRAADLTLVPS-VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL 100 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~s-~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 100 (294)
....+.+.+++.+|.++++| +..++.+...+ .+++.++|||++...+.+.... +......+.++++|+|++
T Consensus 123 ~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~G~~ 194 (366)
T cd03822 123 GDRALLRLLLRRADAVIVMSSELLRALLLRAY---PEKIAVIPHGVPDPPAEPPESL-----KALGGLDGRPVLLTFGLL 194 (366)
T ss_pred hhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcC---CCcEEEeCCCCcCcccCCchhh-----HhhcCCCCCeEEEEEeec
Confidence 34567888999999999996 44444443321 3699999999998766543211 112234467889999999
Q ss_pred cccccHHHHHHHHHhC----CCcEEEEEcCCccHHH---------HHhhhcCCCeEEEec-ccchhHHHHHhcCCEEEee
Q 022615 101 GVEKSLDFLKRVMDRL----PEARIAFIGDGPYREE---------LEKMFTGMPAVFTGM-LLGEELSQAYASGDVFVMP 166 (294)
Q Consensus 101 ~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~---------~~~~~~~~~v~~~g~-~~~~~~~~~~~~ad~~l~p 166 (294)
.+.||++.++++++.+ ++++|+++|.+..... +.+.....+|.+.|. ++.+++..+|+.||++++|
T Consensus 195 ~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~p 274 (366)
T cd03822 195 RPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLP 274 (366)
T ss_pred cCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEec
Confidence 9999999999998665 5899999998653322 223333447999987 9999999999999999999
Q ss_pred cCCC--CcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Q 022615 167 SESE--TLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME 244 (294)
Q Consensus 167 s~~e--~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 244 (294)
+..| ++|++++|||+||+|||+++.++ .+.+ .++.+|+++++.|.++++++|..++++++.+.++++++++.++
T Consensus 275 s~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i---~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 350 (366)
T cd03822 275 YRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEV---LDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYAR 350 (366)
T ss_pred ccccccccchHHHHHHHcCCCEEecCCCC-hhee---eeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh
Confidence 9999 99999999999999999999999 6666 5788999999999999999999999999999999999999998
Q ss_pred hCCHHHHHHHHHHHHH
Q 022615 245 KYDWRAATRTIRNEQY 260 (294)
Q Consensus 245 ~~s~~~~~~~~~~~l~ 260 (294)
+|+|+.+++++. .+|
T Consensus 351 ~~s~~~~~~~~~-~~~ 365 (366)
T cd03822 351 AMSWERVAERYL-RLL 365 (366)
T ss_pred hCCHHHHHHHHH-HHh
Confidence 899999999998 565
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.97 E-value=4.4e-30 Score=217.71 Aligned_cols=222 Identities=28% Similarity=0.417 Sum_probs=190.4
Q ss_pred ccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCC-cCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeec
Q 022615 21 KPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTA-ANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR 99 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~-~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 99 (294)
..++.++++.++.+|.++++|+...+.+.+.+..+ ..++.++++|+|...+.+.... ..++.+.++++|+
T Consensus 126 ~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~G~ 196 (359)
T cd03808 126 RLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP---------IPEDDPVFLFVAR 196 (359)
T ss_pred HHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc---------cCCCCcEEEEEec
Confidence 44567789999999999999999999999877543 4577888999998776554221 1346789999999
Q ss_pred ccccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHh-----hhcCCCeEEEecccchhHHHHHhcCCEEEeecCCC
Q 022615 100 LGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEK-----MFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 170 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~-----~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e 170 (294)
+.+.||++.++++++.+ ++++|+++|.+........ .....+|.+.|+ .+++.++|+.||++++|+..|
T Consensus 197 ~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~i~ps~~e 274 (359)
T cd03808 197 LLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGF--RDDVPELLAAADVFVLPSYRE 274 (359)
T ss_pred cccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeec--cccHHHHHHhccEEEecCccc
Confidence 99999999999999876 6799999998875544332 222346999998 489999999999999999999
Q ss_pred CcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHH
Q 022615 171 TLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWR 249 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~ 249 (294)
++|++++|||+||+|||+++.++..+++ .++.+|++++++|+++++++|..++.+++.+.++++++++.+ ++|+|+
T Consensus 275 ~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i---~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 351 (359)
T cd03808 275 GLPRVLLEAMAMGRPVIATDVPGCREAV---IDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEE 351 (359)
T ss_pred CcchHHHHHHHcCCCEEEecCCCchhhh---hcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999999999999999999999 778999999999999999999999999999999999999996 679999
Q ss_pred HHHHHHH
Q 022615 250 AATRTIR 256 (294)
Q Consensus 250 ~~~~~~~ 256 (294)
.+++++.
T Consensus 352 ~~~~~~~ 358 (359)
T cd03808 352 IVVKKLL 358 (359)
T ss_pred HHHHHhh
Confidence 9998875
No 51
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.97 E-value=3.4e-30 Score=227.40 Aligned_cols=231 Identities=23% Similarity=0.329 Sum_probs=187.1
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHh---------ccCCcCceEEeeccccCCCCCCCccch-----------------
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAA---------RVTAANKIRIWKKGVDSESFHPRFRSS----------------- 78 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~---------~~~~~~~i~~i~~gvd~~~~~~~~~~~----------------- 78 (294)
.+++..+..+|.++++|+..++.+.+. ......++.+|+||+|.+.+.+.....
T Consensus 202 ~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k 281 (476)
T cd03791 202 NFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENK 281 (476)
T ss_pred cHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHH
Confidence 578889999999999999999888641 223457999999999999888754321
Q ss_pred -HHHHHhhcC-CCCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCCcc--HHHHHhhhcC--CCeEEEecccc
Q 022615 79 -EMRWRLSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPY--REELEKMFTG--MPAVFTGMLLG 150 (294)
Q Consensus 79 -~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~~~--~~~~~~~~~~--~~v~~~g~~~~ 150 (294)
..+.+.+.. .++.++|+|+|++.+.||++.+++++..+ .+++|+++|.|.. .+.++++... .++.+.+..+.
T Consensus 282 ~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~ 361 (476)
T cd03791 282 AALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDE 361 (476)
T ss_pred HHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCH
Confidence 112222221 35778999999999999999999999877 3589999998853 3455555543 46777766677
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCc------ceeecCCCCHHHHHHHHHH
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGK------IGYLFNPGDLDDCLSKLEP 224 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~------~g~~~~~~d~~~l~~~i~~ 224 (294)
+++..+|+.||++++||..|++|++.+|||+||+|||+++.++..|++ .++. +|+++++.|+++++++|.+
T Consensus 362 ~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v---~~~~~~~~~~~G~~~~~~~~~~l~~~i~~ 438 (476)
T cd03791 362 ALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTV---IDYNEDTGEGTGFVFEGYNADALLAALRR 438 (476)
T ss_pred HHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceE---eCCcCCCCCCCeEEeCCCCHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999 6666 9999999999999999999
Q ss_pred Hhh---ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 022615 225 LLY---NQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 225 ll~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~ 261 (294)
+++ +++.+.++++++.+ ..|+|+.+++++. ++|+
T Consensus 439 ~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~~y~ 475 (476)
T cd03791 439 ALALYRDPEAWRKLQRNAMA--QDFSWDRSAKEYL-ELYR 475 (476)
T ss_pred HHHHHcCHHHHHHHHHHHhc--cCCChHHHHHHHH-HHHh
Confidence 875 56667777666544 4699999999999 6775
No 52
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.97 E-value=2e-30 Score=220.85 Aligned_cols=211 Identities=25% Similarity=0.330 Sum_probs=174.8
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE 103 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 103 (294)
+.+.+.+.+.+|.++++|+...+.+... ....++.+||||+|...+.+.......+ +.....++.++|+|+|++.+.
T Consensus 128 ~~~~~~~~~~~~~~i~~s~~~~~~~~~~--~~~~~~~vi~ngvd~~~~~~~~~~~~~~-~~~~~~~~~~~i~~vGr~~~~ 204 (358)
T cd03812 128 KVLRKLINRLATDYLACSEEAGKWLFGK--VKNKKFKVIPNGIDLEKFIFNEEIRKKR-RELGILEDKFVIGHVGRFSEQ 204 (358)
T ss_pred HHHHHHHHhcCCEEEEcCHHHHHHHHhC--CCcccEEEEeccCcHHHcCCCchhhhHH-HHcCCCCCCEEEEEEeccccc
Confidence 3567888899999999999999998775 3567999999999988776543322222 222234567899999999999
Q ss_pred ccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEeecCCCCcchH
Q 022615 104 KSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 175 (294)
Q Consensus 104 k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~ 175 (294)
||++.+++++..+ ++++++|+|.|+..+.+.+.++. .+|.+.|+ .+++.++|+.||++++||..|++|++
T Consensus 205 Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~ 282 (358)
T cd03812 205 KNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLV 282 (358)
T ss_pred cChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHH
Confidence 9999999999776 58999999999987777776643 36999998 58999999999999999999999999
Q ss_pred HHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Q 022615 176 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 243 (294)
Q Consensus 176 ~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 243 (294)
++|||++|+|||+++.++..+.+ .+ ..+++..++++++++++|.+++++++..+++...+....
T Consensus 283 ~lEAma~G~PvI~s~~~~~~~~i---~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 283 LIEAQASGLPCILSDTITKEVDL---TD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred HHHHHHhCCCEEEEcCCchhhhh---cc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 99999999999999999999999 66 456666666789999999999999998887776665543
No 53
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=1.3e-29 Score=216.32 Aligned_cols=222 Identities=30% Similarity=0.461 Sum_probs=185.6
Q ss_pred HhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccc--cccHHHH
Q 022615 32 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFL 109 (294)
Q Consensus 32 ~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k~~~~l 109 (294)
..++.++++|++.++.+.+.++.+..++.++|||+|.+.+.+... ...+.... ..++..++++.|+... .||++.+
T Consensus 134 ~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~-~~~~~~~~-~~~~~~~i~~~~~~~~~~~K~~~~l 211 (365)
T cd03825 134 DLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDK-REARKRLG-LPADKKIILFGAVGGTDPRKGFDEL 211 (365)
T ss_pred cCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcH-HHHHHHhC-CCCCCeEEEEEecCCCccccCHHHH
Confidence 567899999999999998877667789999999999988765432 22222222 2344556666666654 8999999
Q ss_pred HHHHHhC-----CCcEEEEEcCCccHHHHHhhhcCCCeEEEeccc-chhHHHHHhcCCEEEeecCCCCcchHHHHHHhcC
Q 022615 110 KRVMDRL-----PEARIAFIGDGPYREELEKMFTGMPAVFTGMLL-GEELSQAYASGDVFVMPSESETLGLVVLEAMSSG 183 (294)
Q Consensus 110 ~~~~~~~-----~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G 183 (294)
++++..+ ++++++++|.++..... ....++.++|+++ .+++..+|+.||++++||..|++|++++|||+||
T Consensus 212 l~a~~~l~~~~~~~~~~~i~G~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g 288 (365)
T cd03825 212 IEALKRLAERWKDDIELVVFGASDPEIPP---DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACG 288 (365)
T ss_pred HHHHHHhhhccCCCeEEEEeCCCchhhhc---cCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcC
Confidence 9999766 56899999987653321 2244799999998 6789999999999999999999999999999999
Q ss_pred CCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Q 022615 184 IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 262 (294)
Q Consensus 184 ~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~~~ 262 (294)
+|||+++.++..+++ .++.+|++++..|.+++++++.+++++++.+.++++++++.+ ++|||+.+++++. .+|++
T Consensus 289 ~PvI~~~~~~~~e~~---~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~y~~ 364 (365)
T cd03825 289 TPVVAFDVGGIPDIV---DHGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYL-SLYEE 364 (365)
T ss_pred CCEEEecCCCChhhe---eCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHhh
Confidence 999999999999999 778899999999999999999999999999999999999998 5699999999999 78875
No 54
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.97 E-value=8.2e-30 Score=217.44 Aligned_cols=223 Identities=29% Similarity=0.435 Sum_probs=183.3
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
..++..++.++.+++.|..........+ +..++.++|||+|.+.+.+...... .......++.++++++|++.+.|
T Consensus 141 ~~~~~~~~~~~~i~~~s~~~~~~~~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~G~~~~~K 216 (375)
T cd03821 141 LFERRLLQAAAAVHATSEQEAAEIRRLG--LKAPIAVIPNGVDIPPFAALPSRGR--RRKFPILPDKRIILFLGRLHPKK 216 (375)
T ss_pred HHHHHHHhcCCEEEECCHHHHHHHHhhC--CcccEEEcCCCcChhccCcchhhhh--hhhccCCCCCcEEEEEeCcchhc
Confidence 4567788899999999988777776543 4568999999999988765432211 11122345678999999999999
Q ss_pred cHHHHHHHHHhC----CCcEEEEEcCCcc--HHHHHhhhc----CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcch
Q 022615 105 SLDFLKRVMDRL----PEARIAFIGDGPY--REELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGL 174 (294)
Q Consensus 105 ~~~~l~~~~~~~----~~~~l~i~G~~~~--~~~~~~~~~----~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~ 174 (294)
|++.+++++..+ ++++++++|.+.. ...++..+. ..+|.+.|+++++++..+|+.||++++||..|++|+
T Consensus 217 ~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~ 296 (375)
T cd03821 217 GLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGI 296 (375)
T ss_pred CHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCc
Confidence 999999999776 5799999997642 233333212 346999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHH
Q 022615 175 VVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATR 253 (294)
Q Consensus 175 ~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~ 253 (294)
+++|||+||+|||+++.++..+++ .+ ..|++.+. +.++++++|..++++++.++++++++++.+ ++|+|+.+++
T Consensus 297 ~~~Eama~G~PvI~~~~~~~~~~~---~~-~~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 371 (375)
T cd03821 297 VVAEALACGTPVVTTDKVPWQELI---EY-GCGWVVDD-DVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQ 371 (375)
T ss_pred HHHHHHhcCCCEEEcCCCCHHHHh---hc-CceEEeCC-ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999 66 77887765 559999999999999999999999999996 6799999999
Q ss_pred HHH
Q 022615 254 TIR 256 (294)
Q Consensus 254 ~~~ 256 (294)
+++
T Consensus 372 ~~~ 374 (375)
T cd03821 372 QLL 374 (375)
T ss_pred Hhh
Confidence 875
No 55
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.97 E-value=9.2e-30 Score=214.82 Aligned_cols=211 Identities=27% Similarity=0.446 Sum_probs=180.5
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccccc
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 105 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~ 105 (294)
.++.+++.+|.+++.|+.++... ...+..++.++|||++...+.+. ...+...++++|++.+.||
T Consensus 128 ~~~~~~~~~d~ii~~s~~~~~~~---~~~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~i~~~g~~~~~K~ 192 (348)
T cd03820 128 LRRLLYRRADAVVVLTEEDRALY---YKKFNKNVVVIPNPLPFPPEEPS------------SDLKSKRILAVGRLVPQKG 192 (348)
T ss_pred HHHHHHhcCCEEEEeCHHHHHHh---hccCCCCeEEecCCcChhhcccc------------CCCCCcEEEEEEeeccccC
Confidence 48889999999999999998222 22355789999999998765443 1345678999999999999
Q ss_pred HHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcCC----CeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHH
Q 022615 106 LDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL 177 (294)
Q Consensus 106 ~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~----~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~ 177 (294)
++.++++++.+ ++++|+|+|.++....+.++.... ++.+.|. .+++..+|+.||++++|+..|++|++++
T Consensus 193 ~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~ 270 (348)
T cd03820 193 FDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLL 270 (348)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHH
Confidence 99999999875 689999999998877776655433 5888888 5999999999999999999999999999
Q ss_pred HHHhcCCCEEeecCCC-cccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 022615 178 EAMSSGIPVVGVRAGG-IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 256 (294)
Q Consensus 178 Ea~a~G~pvI~~~~~~-~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 256 (294)
|||+||+|||+++.++ ..+++ .++.+|+++++.|+++++++|.++++|++.++++++++++.+++|+|++++++|.
T Consensus 271 Ea~a~G~Pvi~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 271 EAMAFGLPVISFDCPTGPSEII---EDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred HHHHcCCCEEEecCCCchHhhh---ccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 9999999999998754 55666 5566999999999999999999999999999999999988888999999998875
No 56
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.97 E-value=8.9e-30 Score=217.61 Aligned_cols=235 Identities=14% Similarity=0.143 Sum_probs=176.0
Q ss_pred ccccccceeccccCCCccccc-HHHHHHHHHH-hCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchH
Q 022615 2 SYHTHVPVYIPRYTFSWLVKP-MWLVIKFLHR-AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE 79 (294)
Q Consensus 2 ~~h~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~ 79 (294)
+|||++++|.+.+...+.... .+.+.+++.+ .+|.++++|..+.+ +.+ .+.+.++|||...|.+.....
T Consensus 147 tyHT~y~~Y~~~~~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~~-------~~i~~v~GVd~~~f~~~~~~~- 217 (462)
T PLN02846 147 IVHTNYLEYVKREKNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YPR-------SIICNVHGVNPKFLEIGKLKL- 217 (462)
T ss_pred EECCChHHHHHHhccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-Hhh-------CEEecCceechhhcCCCcccH-
Confidence 699999998876553333332 2233444433 38999999986655 432 244456899999887654321
Q ss_pred HHHHhhcCCCC--CceEEEeecccccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcCCC--e-EEEecccc
Q 022615 80 MRWRLSNGEPD--KPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGMP--A-VFTGMLLG 150 (294)
Q Consensus 80 ~~~~~~~~~~~--~~~i~~~G~~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~--v-~~~g~~~~ 150 (294)
+... ..++ .+.++|+||+.+.||++.+++++..+ ++++|+|+|+|++.+.+++++.+.+ + .+.|..
T Consensus 218 -~~~~--~~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~-- 292 (462)
T PLN02846 218 -EQQK--NGEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRD-- 292 (462)
T ss_pred -hhhc--CCCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCC--
Confidence 1111 1223 24689999999999999999999754 6899999999999999999887654 2 355543
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChH
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 230 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~ 230 (294)
+..++|..+|++++||..|++|++++||||||+|||+++.++ .+++ .++.+|+.++ |.+++++++..++.++.
T Consensus 293 -~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v---~~~~ng~~~~--~~~~~a~ai~~~l~~~~ 365 (462)
T PLN02846 293 -HADPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NEFF---KQFPNCRTYD--DGKGFVRATLKALAEEP 365 (462)
T ss_pred -CHHHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC-ccee---ecCCceEecC--CHHHHHHHHHHHHccCc
Confidence 344799999999999999999999999999999999999997 5888 7889998885 89999999999998543
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 022615 231 LRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 263 (294)
Q Consensus 231 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~ 263 (294)
..++..+ .++|||+..+++++ .+|+--
T Consensus 366 --~~~~~~a---~~~~SWe~~~~~l~-~~~~~~ 392 (462)
T PLN02846 366 --APLTDAQ---RHELSWEAATERFL-RVADLD 392 (462)
T ss_pred --hhHHHHH---HHhCCHHHHHHHHH-HHhccC
Confidence 2222222 24899999999999 777643
No 57
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=1.9e-29 Score=215.30 Aligned_cols=225 Identities=37% Similarity=0.644 Sum_probs=189.5
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
.+++.+++.+|.++++|+.+++.+.+.+. ..++.++|+|+|...+.+..... .+... ...++.++++++|++.+.|
T Consensus 140 ~~~~~~~~~~d~i~~~s~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~~~G~~~~~k 215 (374)
T cd03817 140 KLSRRFYNRCDAVIAPSEKIADLLREYGV--KRPIEVIPTGIDLDRFEPVDGDD-ERRKL-GIPEDEPVLLYVGRLAKEK 215 (374)
T ss_pred HHHHHHhhhCCEEEeccHHHHHHHHhcCC--CCceEEcCCccchhccCccchhH-HHHhc-CCCCCCeEEEEEeeeeccc
Confidence 57889999999999999999999987543 34699999999988776643221 12221 2245678899999999999
Q ss_pred cHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhc----CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHH
Q 022615 105 SLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVV 176 (294)
Q Consensus 105 ~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~----~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~ 176 (294)
+++.+++++..+ ++++++++|.++..+.+++..+ ..++.+.|+++++++..+|+.||++++|+..|++|+++
T Consensus 216 ~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~ 295 (374)
T cd03817 216 NIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVL 295 (374)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHH
Confidence 999999999766 5799999999988777777653 33699999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 022615 177 LEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 256 (294)
Q Consensus 177 ~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 256 (294)
+|||+||+|||+++.++..+++ .++.+|+++++.+. +++++|.+++++++.++++++++++.+++++ .++++.
T Consensus 296 ~Ea~~~g~PvI~~~~~~~~~~i---~~~~~g~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 368 (374)
T cd03817 296 LEAMAAGLPVVAVDAPGLPDLV---ADGENGFLFPPGDE-ALAEALLRLLQDPELRRRLSKNAEESAEKFS---FAKKVE 368 (374)
T ss_pred HHHHHcCCcEEEeCCCChhhhe---ecCceeEEeCCCCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 9999999999999999999999 78899999998777 9999999999999999999999999988766 444444
Q ss_pred HHHHH
Q 022615 257 NEQYN 261 (294)
Q Consensus 257 ~~l~~ 261 (294)
.+|+
T Consensus 369 -~~~~ 372 (374)
T cd03817 369 -KLYE 372 (374)
T ss_pred -HHHh
Confidence 4554
No 58
>PHA01633 putative glycosyl transferase group 1
Probab=99.97 E-value=4.1e-29 Score=205.88 Aligned_cols=224 Identities=19% Similarity=0.240 Sum_probs=169.2
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCcc-chHHHHHhhcCCCCCceEEEeecccc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR-SSEMRWRLSNGEPDKPLIVHVGRLGV 102 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~G~~~~ 102 (294)
....+++.+ .+.+|++|+.+++.+.+. |.+.. + ++++|+|.+.|.+... ....+.+.....++.+.++++|++.+
T Consensus 84 ~~y~~~m~~-~~~vIavS~~t~~~L~~~-G~~~~-i-~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~ 159 (335)
T PHA01633 84 EIVNKYLLQ-DVKFIPNSKFSAENLQEV-GLQVD-L-PVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTK 159 (335)
T ss_pred HHHHHHHhc-CCEEEeCCHHHHHHHHHh-CCCCc-e-eeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCcc
Confidence 344555554 669999999999999975 34332 3 5789999998876532 22333333323346778999999999
Q ss_pred cccHHHHHHHHHhC----C----CcEEEEEcCCccHHHHHhhhcCCCeEEE---ecccchhHHHHHhcCCEEEeecCCCC
Q 022615 103 EKSLDFLKRVMDRL----P----EARIAFIGDGPYREELEKMFTGMPAVFT---GMLLGEELSQAYASGDVFVMPSESET 171 (294)
Q Consensus 103 ~k~~~~l~~~~~~~----~----~~~l~i~G~~~~~~~~~~~~~~~~v~~~---g~~~~~~~~~~~~~ad~~l~ps~~e~ 171 (294)
+||++.++++++.+ + +++++++|.+ .+.++....+|.+. |+++.+++.++|+.||++++||..|+
T Consensus 160 ~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~----~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~Eg 235 (335)
T PHA01633 160 RKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK----QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEG 235 (335)
T ss_pred ccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH----HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCcccc
Confidence 99999999999876 3 3577777742 33333334478888 55678999999999999999999999
Q ss_pred cchHHHHHHhcCCCEEeecCCCccccccc---------------CCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHH
Q 022615 172 LGLVVLEAMSSGIPVVGVRAGGIPDIIPE---------------DQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 236 (294)
Q Consensus 172 ~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~---------------~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~ 236 (294)
||++++|||+||+|||+++.+++.|+... +.....|+.++..|+++++++|..++...+ ....+
T Consensus 236 fGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~-~~~~~ 314 (335)
T PHA01633 236 FGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQD-REERS 314 (335)
T ss_pred CCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhccC-hhhhh
Confidence 99999999999999999999998887521 012235778888899999999999865432 23346
Q ss_pred HHHHHHHHhCCHHHHHHHHH
Q 022615 237 QAARQEMEKYDWRAATRTIR 256 (294)
Q Consensus 237 ~~~~~~~~~~s~~~~~~~~~ 256 (294)
.++++.+++|+|+.+.++|+
T Consensus 315 ~~~~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 315 MKLKELAKKYDIRNLYTRFL 334 (335)
T ss_pred HHHHHHHHhcCHHHHHHHhh
Confidence 77788889999999999886
No 59
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.97 E-value=3e-29 Score=215.16 Aligned_cols=212 Identities=17% Similarity=0.166 Sum_probs=164.2
Q ss_pred HHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecc--cccc
Q 022615 27 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL--GVEK 104 (294)
Q Consensus 27 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~--~~~k 104 (294)
.+.+.+.++.+|++|+++++.+.+.++ ..++.+||||+|.+.+.+....... + ..+++.+++++|+. .+.|
T Consensus 184 ~~~~~~~~~~iV~~S~~l~~~~~~~~~--~~~i~vI~NGid~~~~~~~~~~~~~--~---~~~~~~~il~v~~~~~~~~K 256 (405)
T PRK10125 184 FREMLALGCQFISPSQHVADAFNSLYG--PGRCRIINNGIDMATEAILAELPPV--R---ETQGKPKIAVVAHDLRYDGK 256 (405)
T ss_pred HHHHhhcCcEEEEcCHHHHHHHHHHcC--CCCEEEeCCCcCccccccccccccc--c---cCCCCCEEEEEEeccccCCc
Confidence 444455678999999999999887654 3689999999996432221111000 0 12456789999984 4679
Q ss_pred cHHHHHHHHHhC-CCcEEEEEcCCccHHHHHhhhcCCCeEEEeccc-chhHHHHHhcCCEEEeecCCCCcchHHHHHHhc
Q 022615 105 SLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLL-GEELSQAYASGDVFVMPSESETLGLVVLEAMSS 182 (294)
Q Consensus 105 ~~~~l~~~~~~~-~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~ 182 (294)
|++.+++++..+ ++++|+++|.++... ..++.+.|+.. .+++.++|+.||++++||..|++|++++|||||
T Consensus 257 g~~~li~A~~~l~~~~~L~ivG~g~~~~-------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~ 329 (405)
T PRK10125 257 TDQQLVREMMALGDKIELHTFGKFSPFT-------AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSI 329 (405)
T ss_pred cHHHHHHHHHhCCCCeEEEEEcCCCccc-------ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHc
Confidence 999999999987 578999999875321 23688888874 478999999999999999999999999999999
Q ss_pred CCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHH----HHHHHHHHH-HhCCHHHHHHHHHH
Q 022615 183 GIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRET----MGQAARQEM-EKYDWRAATRTIRN 257 (294)
Q Consensus 183 G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~----~~~~~~~~~-~~~s~~~~~~~~~~ 257 (294)
|+|||+|+.++.+|++ .++ +|++++++|++++++.+ +++..++ +..++++.+ ++|||+.++++++
T Consensus 330 G~PVVat~~gG~~Eiv---~~~-~G~lv~~~d~~~La~~~-----~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~- 399 (405)
T PRK10125 330 GVPVIATHSDAAREVL---QKS-GGKTVSEEEVLQLAQLS-----KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYV- 399 (405)
T ss_pred CCCEEEeCCCChHHhE---eCC-cEEEECCCCHHHHHhcc-----CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHH-
Confidence 9999999999999999 554 89999999999999854 3333222 234466666 5699999999999
Q ss_pred HHHHH
Q 022615 258 EQYNA 262 (294)
Q Consensus 258 ~l~~~ 262 (294)
.+|++
T Consensus 400 ~lY~~ 404 (405)
T PRK10125 400 NFYQN 404 (405)
T ss_pred HHHHh
Confidence 89875
No 60
>PLN00142 sucrose synthase
Probab=99.97 E-value=5.6e-29 Score=222.84 Aligned_cols=229 Identities=21% Similarity=0.301 Sum_probs=178.5
Q ss_pred HHHHHHHhCCeEEecchhhHH-------HHHHhc------------cC--CcCceEEeeccccCCCCCCCccchHH----
Q 022615 26 VIKFLHRAADLTLVPSVAIGK-------DLEAAR------------VT--AANKIRIWKKGVDSESFHPRFRSSEM---- 80 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~-------~~~~~~------------~~--~~~~i~~i~~gvd~~~~~~~~~~~~~---- 80 (294)
.+..+.+.||.||+.|..... .+.++. ++ ...++.+||+|+|...|.|.......
T Consensus 468 aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l 547 (815)
T PLN00142 468 ADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSL 547 (815)
T ss_pred HHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhh
Confidence 478889999999999976653 232321 11 14489999999999988764322110
Q ss_pred --------------HHHhhc-CCCCCceEEEeecccccccHHHHHHHHHhC----CCcEEEEEcCCc------cH-----
Q 022615 81 --------------RWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGP------YR----- 130 (294)
Q Consensus 81 --------------~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~------~~----- 130 (294)
....+. ..+++++|+++||+.+.||++.+++++..+ ++++|+|+|.+. ..
T Consensus 548 ~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~e 627 (815)
T PLN00142 548 HPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAE 627 (815)
T ss_pred cccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHH
Confidence 111221 234567899999999999999999999765 468999999762 11
Q ss_pred -HHHHhhhcCC----CeEEEeccc----chhHHHHHh-cCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCccccccc
Q 022615 131 -EELEKMFTGM----PAVFTGMLL----GEELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE 200 (294)
Q Consensus 131 -~~~~~~~~~~----~v~~~g~~~----~~~~~~~~~-~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~ 200 (294)
..+.+++++. +|.+.|... .+++..+++ .+|++++||.+|+||++++|||+||+|||+|+.|+..|++
T Consensus 628 l~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV-- 705 (815)
T PLN00142 628 IKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEII-- 705 (815)
T ss_pred HHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHh--
Confidence 2234444433 588887543 357777777 4799999999999999999999999999999999999999
Q ss_pred CCCCcceeecCCCCHHHHHHHHHHH----hhChHHHHHHHHHHHHHH-HhCCHHHHHHHHHH
Q 022615 201 DQDGKIGYLFNPGDLDDCLSKLEPL----LYNQELRETMGQAARQEM-EKYDWRAATRTIRN 257 (294)
Q Consensus 201 ~~~~~~g~~~~~~d~~~l~~~i~~l----l~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~ 257 (294)
.++.+|+++++.|+++++++|..+ +.|++.++++++++++.+ ++|||+.+++++++
T Consensus 706 -~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~ 766 (815)
T PLN00142 706 -VDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLT 766 (815)
T ss_pred -cCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 899999999999999999998765 468999999999999998 67999999999995
No 61
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=3.9e-29 Score=211.29 Aligned_cols=214 Identities=34% Similarity=0.473 Sum_probs=181.8
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
.+++.+++.+|.++++|+.+++.+.+.++.+..++.++|||+|...+.+...... .....++.++++++|++.+.|
T Consensus 127 ~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~g~~~~~k 202 (353)
T cd03811 127 LLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL----ELGIPPDGPVILAVGRLSPQK 202 (353)
T ss_pred HHHHhhccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh----hcCCCCCceEEEEEecchhhc
Confidence 4788899999999999999999999988765689999999999887765433211 111245678899999999999
Q ss_pred cHHHHHHHHHhCC----CcEEEEEcCCccHHHHHhhhcCC----CeEEEecccchhHHHHHhcCCEEEeecCCCCcchHH
Q 022615 105 SLDFLKRVMDRLP----EARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVV 176 (294)
Q Consensus 105 ~~~~l~~~~~~~~----~~~l~i~G~~~~~~~~~~~~~~~----~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~ 176 (294)
|++.++++++.++ +++|+++|.++....+.+.+... ++.+.|+. +++.++++.||++++||..|++|+++
T Consensus 203 ~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~i~ps~~e~~~~~~ 280 (353)
T cd03811 203 GFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQ--SNPYPYLKAADLFVLSSRYEGFPNVL 280 (353)
T ss_pred ChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEeccc--CCHHHHHHhCCEEEeCcccCCCCcHH
Confidence 9999999998874 79999999988777766665533 58999986 78999999999999999999999999
Q ss_pred HHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHH---HHHHHHHhhChHHHHHHHHHHHHHH-HhCC
Q 022615 177 LEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC---LSKLEPLLYNQELRETMGQAARQEM-EKYD 247 (294)
Q Consensus 177 ~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l---~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s 247 (294)
+|||++|+|||+++.++..+++ .++.+|+++++++.+++ .+++..+..+++.+.++++++.+.+ ++|+
T Consensus 281 ~Ea~~~G~PvI~~~~~~~~e~i---~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 281 LEAMALGTPVVATDCPGPREIL---EDGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred HHHHHhCCCEEEcCCCChHHHh---cCCCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999 88999999999999998 7777788888888888888666665 5564
No 62
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.97 E-value=1.2e-28 Score=209.34 Aligned_cols=213 Identities=27% Similarity=0.440 Sum_probs=182.0
Q ss_pred HhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHHHHHH
Q 022615 32 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 111 (294)
Q Consensus 32 ~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 111 (294)
...|.++++|+.+.+.+.+.+.. ..++.++|||+|...+.+... ....+.++++++|++.+.||++.+++
T Consensus 142 ~~~d~ii~~s~~~~~~~~~~~~~-~~~~~vi~n~~~~~~~~~~~~---------~~~~~~~~i~~~G~~~~~k~~~~li~ 211 (359)
T cd03823 142 KGGDAVIAPSRFLLDRYVANGLF-AEKISVIRNGIDLDRAKRPRR---------APPGGRLRFGFIGQLTPHKGVDLLLE 211 (359)
T ss_pred cCCCEEEEeCHHHHHHHHHcCCC-ccceEEecCCcChhhcccccc---------CCCCCceEEEEEecCccccCHHHHHH
Confidence 34499999999999999887643 568999999999987765422 12346678999999999999999999
Q ss_pred HHHhCC--CcEEEEEcCCccHHHHHhhh-cCCCeEEEecccchhHHHHHhcCCEEEeecC-CCCcchHHHHHHhcCCCEE
Q 022615 112 VMDRLP--EARIAFIGDGPYREELEKMF-TGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVV 187 (294)
Q Consensus 112 ~~~~~~--~~~l~i~G~~~~~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~G~pvI 187 (294)
+++.++ +++|+++|.+.......... ...++.+.|+++.+++.++|+.||++++|+. .|++|++++|||+||+|||
T Consensus 212 ~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi 291 (359)
T cd03823 212 AFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVI 291 (359)
T ss_pred HHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEE
Confidence 998885 89999999887654443322 2347999999999999999999999999997 7999999999999999999
Q ss_pred eecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 022615 188 GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 188 ~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~ 261 (294)
+++.++..+++ .++.+|++++++|.+++++++.+++++++.++++++++++.... +.+++++. ++|+
T Consensus 292 ~~~~~~~~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~ 358 (359)
T cd03823 292 ASDIGGMAELV---RDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSI---EDQAEEYL-KLYR 358 (359)
T ss_pred ECCCCCHHHHh---cCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhH---HHHHHHHH-HHhh
Confidence 99999999999 77889999999999999999999999999999999988776543 88888887 6765
No 63
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.96 E-value=9.7e-28 Score=202.49 Aligned_cols=203 Identities=19% Similarity=0.336 Sum_probs=169.3
Q ss_pred HHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHH
Q 022615 28 KFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLD 107 (294)
Q Consensus 28 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~ 107 (294)
.......+.++++|+..++.+... .++.++|||+|.+.+.+. ..++..++|+|++.+.||++
T Consensus 126 ~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~vi~ngvd~~~~~~~-------------~~~~~~i~~~Gr~~~~Kg~~ 187 (335)
T cd03802 126 YYAARPDVPFVSISDAQRRPWPPL-----PWVATVHNGIDLDDYPFR-------------GPKGDYLLFLGRISPEKGPH 187 (335)
T ss_pred HHhhCcCCeEEEecHHHHhhcccc-----cccEEecCCcChhhCCCC-------------CCCCCEEEEEEeeccccCHH
Confidence 345567889999999988877543 589999999999887652 23456899999999999999
Q ss_pred HHHHHHHhCCCcEEEEEcCCccHHHHHhhhc-----CCCeEEEecccchhHHHHHhcCCEEEeecC-CCCcchHHHHHHh
Q 022615 108 FLKRVMDRLPEARIAFIGDGPYREELEKMFT-----GMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMS 181 (294)
Q Consensus 108 ~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~-----~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a 181 (294)
.+++++++. +++++++|.++.......... ..+|.+.|+++++++..+|+.+|++++|+. .|++|.+++|||+
T Consensus 188 ~li~~~~~~-~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma 266 (335)
T cd03802 188 LAIRAARRA-GIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMA 266 (335)
T ss_pred HHHHHHHhc-CCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHh
Confidence 999998764 799999999876554443322 357999999999999999999999999997 5999999999999
Q ss_pred cCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Q 022615 182 SGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQY 260 (294)
Q Consensus 182 ~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~ 260 (294)
||+|||+++.++..|++ .++.+|+++++ +++++++|..+...+ .+++++.+ ++|+|+.+++++. .+|
T Consensus 267 ~G~PvI~~~~~~~~e~i---~~~~~g~l~~~--~~~l~~~l~~l~~~~------~~~~~~~~~~~~s~~~~~~~~~-~~y 334 (335)
T cd03802 267 CGTPVIAFRRGAVPEVV---EDGVTGFLVDS--VEELAAAVARADRLD------RAACRRRAERRFSAARMVDDYL-ALY 334 (335)
T ss_pred cCCCEEEeCCCCchhhe---eCCCcEEEeCC--HHHHHHHHHHHhccH------HHHHHHHHHHhCCHHHHHHHHH-HHh
Confidence 99999999999999999 77889999985 999999999986543 23455555 6799999999999 677
Q ss_pred H
Q 022615 261 N 261 (294)
Q Consensus 261 ~ 261 (294)
+
T Consensus 335 ~ 335 (335)
T cd03802 335 R 335 (335)
T ss_pred C
Confidence 3
No 64
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.96 E-value=5.2e-28 Score=206.62 Aligned_cols=221 Identities=17% Similarity=0.178 Sum_probs=167.2
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE 103 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 103 (294)
...++.+++++|.|+++|+.+.+.+.+.+ .++.++|||+|.+.|.+......... .....++++++|+|++++.
T Consensus 144 ~~~e~~~~~~ad~vi~~S~~l~~~~~~~~----~~i~~i~ngvd~~~f~~~~~~~~~~~--~~~~~~~~~i~y~G~l~~~ 217 (373)
T cd04950 144 LEAERRLLKRADLVFTTSPSLYEAKRRLN----PNVVLVPNGVDYEHFAAARDPPPPPA--DLAALPRPVIGYYGAIAEW 217 (373)
T ss_pred HHHHHHHHHhCCEEEECCHHHHHHHhhCC----CCEEEcccccCHHHhhcccccCCChh--HHhcCCCCEEEEEeccccc
Confidence 37899999999999999999999887753 58999999999988865432211000 1123467899999999998
Q ss_pred ccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCC-----CCcchHHHH
Q 022615 104 KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES-----ETLGLVVLE 178 (294)
Q Consensus 104 k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~-----e~~~~~~~E 178 (294)
++++.+.++++..|+++|+++|.++.......+....||+++|+++++++..+++.+|++++|+.. +++|++++|
T Consensus 218 ~d~~ll~~la~~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~E 297 (373)
T cd04950 218 LDLELLEALAKARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFE 297 (373)
T ss_pred cCHHHHHHHHHHCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHH
Confidence 889988888888899999999987322233333335689999999999999999999999999753 467999999
Q ss_pred HHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 022615 179 AMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNE 258 (294)
Q Consensus 179 a~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 258 (294)
|||||+|||+++.++..+. ...+ ++.++|.++++++|.+++.++..... ....+.++++||+..++++...
T Consensus 298 ylA~G~PVVat~~~~~~~~------~~~~-~~~~~d~~~~~~ai~~~l~~~~~~~~--~~~~~~~~~~sW~~~a~~~~~~ 368 (373)
T cd04950 298 YLAAGKPVVATPLPEVRRY------EDEV-VLIADDPEEFVAAIEKALLEDGPARE--RRRLRLAAQNSWDARAAEMLEA 368 (373)
T ss_pred HhccCCCEEecCcHHHHhh------cCcE-EEeCCCHHHHHHHHHHHHhcCCchHH--HHHHHHHHHCCHHHHHHHHHHH
Confidence 9999999999986654333 2333 34456899999999997654322111 1222256789999999999844
Q ss_pred H
Q 022615 259 Q 259 (294)
Q Consensus 259 l 259 (294)
+
T Consensus 369 l 369 (373)
T cd04950 369 L 369 (373)
T ss_pred H
Confidence 3
No 65
>PLN02275 transferase, transferring glycosyl groups
Probab=99.96 E-value=3.3e-28 Score=207.59 Aligned_cols=193 Identities=21% Similarity=0.269 Sum_probs=158.1
Q ss_pred ccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEee
Q 022615 19 LVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG 98 (294)
Q Consensus 19 ~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 98 (294)
..+..+++++++++.+|.++++|+.+++.+.+.++.+ +.+||||. .+.|.+..... ....+...+++++|
T Consensus 151 ~~~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~~g~~---i~vi~n~~-~~~f~~~~~~~------~~~~~~~~~i~~~g 220 (371)
T PLN02275 151 LVRLYRWYERHYGKMADGHLCVTKAMQHELDQNWGIR---ATVLYDQP-PEFFRPASLEI------RLRPNRPALVVSST 220 (371)
T ss_pred HHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHhcCCC---eEEECCCC-HHHcCcCCchh------cccCCCcEEEEEeC
Confidence 3456678899999999999999999999998765553 88999985 35554432211 01123345788999
Q ss_pred cccccccHHHHHHHHHhC---------------------CCcEEEEEcCCccHHHHHhhhcCC---CeEEEe-cccchhH
Q 022615 99 RLGVEKSLDFLKRVMDRL---------------------PEARIAFIGDGPYREELEKMFTGM---PAVFTG-MLLGEEL 153 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~---------------------~~~~l~i~G~~~~~~~~~~~~~~~---~v~~~g-~~~~~~~ 153 (294)
++.+.||++.+++++..+ |+++|+|+|+|+..+.+++++++. ++.+.+ +++.+++
T Consensus 221 rl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~ 300 (371)
T PLN02275 221 SWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDY 300 (371)
T ss_pred ceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHH
Confidence 999999999999988653 679999999999999888887754 477765 6899999
Q ss_pred HHHHhcCCEEEeecC---CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 154 SQAYASGDVFVMPSE---SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 154 ~~~~~~ad~~l~ps~---~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
..+|+.||++++|+. .+++|++++||||||+|||+++.++..|++ +++.+|++++ ++++++++|.+++
T Consensus 301 ~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv---~~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 301 PLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELV---KDGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred HHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHc---cCCCCeEEEC--CHHHHHHHHHHhC
Confidence 999999999998632 478999999999999999999999999999 8899999997 7999999998764
No 66
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.96 E-value=2.6e-28 Score=193.98 Aligned_cols=225 Identities=25% Similarity=0.414 Sum_probs=179.9
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
++.+..+...|.+||+|...++...=+...+++++.+|||.++...|.|..... ...+...++.++++-++|
T Consensus 137 ~ll~~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~--------~S~~i~~ivv~sRLvyrK 208 (426)
T KOG1111|consen 137 KLLPLSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADK--------PSADIITIVVASRLVYRK 208 (426)
T ss_pred ceeeeeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCcccc--------CCCCeeEEEEEeeeeecc
Confidence 455666788999999999888877666677889999999999999998853331 122347899999999999
Q ss_pred cHHHHHHHHH----hCCCcEEEEEcCCccHHHH----HhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHH
Q 022615 105 SLDFLKRVMD----RLPEARIAFIGDGPYREEL----EKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVV 176 (294)
Q Consensus 105 ~~~~l~~~~~----~~~~~~l~i~G~~~~~~~~----~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~ 176 (294)
|+|.+++++. +.|+++|+|+|+|+.+..+ ++..-+.+|.++|.++++++.+.|.+-|++++||..|+|++.+
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~i 288 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVI 288 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHH
Confidence 9999998774 4589999999999954444 4444455799999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hCCHHHHHHHH
Q 022615 177 LEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTI 255 (294)
Q Consensus 177 ~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~ 255 (294)
+||++||+|||++..||.+|+++. .-......+++++.+++++.+..-.. .-+...+..+ .|+|+.++++-
T Consensus 289 vEAaScGL~VVsTrVGGIpeVLP~-----d~i~~~~~~~~dl~~~v~~ai~~~~~---~p~~~h~~v~~~y~w~dVa~rT 360 (426)
T KOG1111|consen 289 VEAASCGLPVVSTRVGGIPEVLPE-----DMITLGEPGPDDLVGAVEKAITKLRT---LPLEFHDRVKKMYSWKDVAERT 360 (426)
T ss_pred HHHHhCCCEEEEeecCCccccCCc-----cceeccCCChHHHHHHHHHHHHHhcc---CchhHHHHHHHhccHHHHHHHH
Confidence 999999999999999999999932 22334445788888888887753211 1223344554 49999999999
Q ss_pred HHHHHHHHHHH
Q 022615 256 RNEQYNAAIWF 266 (294)
Q Consensus 256 ~~~l~~~~~~~ 266 (294)
. .+|+++...
T Consensus 361 e-kvy~r~~~t 370 (426)
T KOG1111|consen 361 E-KVYDRAATT 370 (426)
T ss_pred H-HHHHHHhhc
Confidence 8 899988643
No 67
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.94 E-value=2.7e-26 Score=199.90 Aligned_cols=228 Identities=21% Similarity=0.256 Sum_probs=170.0
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhc----------------cCCcCceEEeeccccCCCCCCCccchHHH---HHhh
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAAR----------------VTAANKIRIWKKGVDSESFHPRFRSSEMR---WRLS 85 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~----------------~~~~~~i~~i~~gvd~~~~~~~~~~~~~~---~~~~ 85 (294)
.+.+-++ .+|.|.+.+....+.+.+.- .....++.++|+|+|.+.|.+........ .+..
T Consensus 180 ~ll~~~l-~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~ 258 (460)
T cd03788 180 ELLRGLL-GADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELR 258 (460)
T ss_pred HHHHHHh-cCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHH
Confidence 3444444 49999998866555544421 11234689999999998886543322211 1112
Q ss_pred cCCCCCceEEEeecccccccHHHHHHHHHhC----CC----cEEEEEcCC-----ccHHHH----HhhhcC---------
Q 022615 86 NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PE----ARIAFIGDG-----PYREEL----EKMFTG--------- 139 (294)
Q Consensus 86 ~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~----~~----~~l~i~G~~-----~~~~~~----~~~~~~--------- 139 (294)
...+++++|+++|++.+.||++.+++|++.+ |+ ++|+++|.+ +....+ ++++.+
T Consensus 259 ~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~ 338 (460)
T cd03788 259 ERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLD 338 (460)
T ss_pred HhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 2345678899999999999999999998764 44 578888643 232223 332211
Q ss_pred -CCeE-EEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCC----EEeecCCCcccccccCCCCcceeecCCC
Q 022615 140 -MPAV-FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPG 213 (294)
Q Consensus 140 -~~v~-~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~p----vI~~~~~~~~e~~~~~~~~~~g~~~~~~ 213 (294)
.++. +.|.++.+++..+|+.||++++||..||+|++++|||+||+| ||+|+.+|..+.. .+|+++++.
T Consensus 339 ~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~~------~~g~lv~p~ 412 (460)
T cd03788 339 WTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEEL------SGALLVNPY 412 (460)
T ss_pred ceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhhc------CCCEEECCC
Confidence 1244 457889999999999999999999999999999999999999 9999887776553 568999999
Q ss_pred CHHHHHHHHHHHhhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 022615 214 DLDDCLSKLEPLLYNQ-ELRETMGQAARQEMEKYDWRAATRTIRNEQ 259 (294)
Q Consensus 214 d~~~l~~~i~~ll~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l 259 (294)
|+++++++|.++++++ ++++.+.+++++.+.+|+++..++++++.+
T Consensus 413 d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~l~~l 459 (460)
T cd03788 413 DIDEVADAIHRALTMPLEERRERHRKLREYVRTHDVQAWANSFLDDL 459 (460)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 9999999999999854 678888888899999999999999988654
No 68
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.94 E-value=3e-25 Score=191.88 Aligned_cols=223 Identities=21% Similarity=0.247 Sum_probs=171.7
Q ss_pred HHhCCeEEecchhhHHHHHHhcc---------------CCcCceEEeeccccCCCCCCCccchHH---HHHhhcCCCCCc
Q 022615 31 HRAADLTLVPSVAIGKDLEAARV---------------TAANKIRIWKKGVDSESFHPRFRSSEM---RWRLSNGEPDKP 92 (294)
Q Consensus 31 ~~~ad~ii~~s~~~~~~~~~~~~---------------~~~~~i~~i~~gvd~~~~~~~~~~~~~---~~~~~~~~~~~~ 92 (294)
+-.+|.|-+.+....+.+.+... ....++.++|||+|.+.|.+....... ........++++
T Consensus 181 ll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~ 260 (456)
T TIGR02400 181 LLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLKGRK 260 (456)
T ss_pred HhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcCCCe
Confidence 34799999999888887766221 134568899999999988654322111 111111124677
Q ss_pred eEEEeecccccccHHHHHHHHHhC----CC----cEEEEEc-----CCccHHHHHhhhcCC--------------CeE-E
Q 022615 93 LIVHVGRLGVEKSLDFLKRVMDRL----PE----ARIAFIG-----DGPYREELEKMFTGM--------------PAV-F 144 (294)
Q Consensus 93 ~i~~~G~~~~~k~~~~l~~~~~~~----~~----~~l~i~G-----~~~~~~~~~~~~~~~--------------~v~-~ 144 (294)
+|+++||+.+.||++.+++|++.+ |+ +.++++| .++....+++.+++. .+. +
T Consensus 261 vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l 340 (456)
T TIGR02400 261 LIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYL 340 (456)
T ss_pred EEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEE
Confidence 899999999999999999999765 54 5577664 344444444433221 233 4
Q ss_pred EecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCC----EEeecCCCcccccccCCCCcceeecCCCCHHHHHH
Q 022615 145 TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLS 220 (294)
Q Consensus 145 ~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~p----vI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~ 220 (294)
.+.++.+++..+|+.||++++||..||+|++++||||||+| +|+|+.+|..+.+ . +|+++++.|++++++
T Consensus 341 ~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l---~---~gllVnP~d~~~lA~ 414 (456)
T TIGR02400 341 NRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQEL---N---GALLVNPYDIDGMAD 414 (456)
T ss_pred cCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHh---C---CcEEECCCCHHHHHH
Confidence 56788999999999999999999999999999999999999 9999998888888 3 689999999999999
Q ss_pred HHHHHhh-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 022615 221 KLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQ 259 (294)
Q Consensus 221 ~i~~ll~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l 259 (294)
+|.++++ +++++++..+..++.+.++|+...++++++.+
T Consensus 415 aI~~aL~~~~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 415 AIARALTMPLEEREERHRAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 9999998 56688888888899998899999999988654
No 69
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.94 E-value=1.8e-25 Score=170.71 Aligned_cols=153 Identities=38% Similarity=0.734 Sum_probs=135.3
Q ss_pred CCCCCceEEEeecccccccHHHHHHHHHhC-----CCcEEEEEcCCccHHHHHhhhcC----CCeEEEecccchhHHHHH
Q 022615 87 GEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-----PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAY 157 (294)
Q Consensus 87 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~-----~~~~l~i~G~~~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~ 157 (294)
...++++|+++|++.+.||++.+++++..+ +++.++|+|.+.....+...... .++.+.|.++.+++..+|
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 90 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELY 90 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccccccccc
Confidence 356788999999999999999999999764 68999999977766666665543 369999999989999999
Q ss_pred hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHH
Q 022615 158 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQ 237 (294)
Q Consensus 158 ~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~ 237 (294)
+.||++++||..|++|.+++|||+||+|||+++.++..+++ .++.+|+++++.+.++++++|.+++++++.++.|++
T Consensus 91 ~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~---~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~ 167 (172)
T PF00534_consen 91 KSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEII---NDGVNGFLFDPNDIEELADAIEKLLNDPELRQKLGK 167 (172)
T ss_dssp HHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHS---GTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeccccccccccccccccccccccceeeccccCCceee---ccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 788899999999999999999999999999999999
Q ss_pred HHHHH
Q 022615 238 AARQE 242 (294)
Q Consensus 238 ~~~~~ 242 (294)
+++++
T Consensus 168 ~~~~~ 172 (172)
T PF00534_consen 168 NARER 172 (172)
T ss_dssp HHHHH
T ss_pred HhcCC
Confidence 99874
No 70
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.93 E-value=4.7e-24 Score=183.63 Aligned_cols=237 Identities=18% Similarity=0.217 Sum_probs=163.8
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccch-----------HH-HH--Hhh-cCCC
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS-----------EM-RW--RLS-NGEP 89 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~-----------~~-~~--~~~-~~~~ 89 (294)
.+|+.+...||.++++|+.++..+...++.++++ |+|||+|...|.+..... +. +. ... ...+
T Consensus 218 ~iE~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~ 295 (590)
T cd03793 218 CIERAAAHCAHVFTTVSEITAYEAEHLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDL 295 (590)
T ss_pred HHHHHHHhhCCEEEECChHHHHHHHHHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCC
Confidence 4899999999999999999999999999988776 999999999987653211 11 00 111 1223
Q ss_pred CCceEEE-eecccc-cccHHHHHHHHHhCC--------C---cEEEEEcCCcc----------------HHHHHh-----
Q 022615 90 DKPLIVH-VGRLGV-EKSLDFLKRVMDRLP--------E---ARIAFIGDGPY----------------REELEK----- 135 (294)
Q Consensus 90 ~~~~i~~-~G~~~~-~k~~~~l~~~~~~~~--------~---~~l~i~G~~~~----------------~~~~~~----- 135 (294)
++.+++| +||+.. .||++.+++|+.++. + +-|+++-.+.. ++.+.+
T Consensus 296 d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i 375 (590)
T cd03793 296 DKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKI 375 (590)
T ss_pred CCeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHh
Confidence 5556666 799988 999999999997761 2 23444321100 000000
Q ss_pred ------------------h----------------------------------------h------cC--C--CeEEEec
Q 022615 136 ------------------M----------------------------------------F------TG--M--PAVFTGM 147 (294)
Q Consensus 136 ------------------~----------------------------------------~------~~--~--~v~~~g~ 147 (294)
+ + +. . .|+|++.
T Consensus 376 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~ 455 (590)
T cd03793 376 GKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPE 455 (590)
T ss_pred hhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEccc
Confidence 0 0 00 0 1333332
Q ss_pred -cc------chhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccC-CCC-cceeecC-------
Q 022615 148 -LL------GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED-QDG-KIGYLFN------- 211 (294)
Q Consensus 148 -~~------~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~-~~~-~~g~~~~------- 211 (294)
++ ..+..++++.||++++||.+|+||.+++|||+||+|||+|+.+++.+++.+. .++ ..|+.+.
T Consensus 456 ~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~ 535 (590)
T cd03793 456 FLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSP 535 (590)
T ss_pred ccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccch
Confidence 21 2358899999999999999999999999999999999999999985544211 223 3466665
Q ss_pred CCCHHHHHHHHHHHhhChHHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHH
Q 022615 212 PGDLDDCLSKLEPLLYNQELRETMGQAAR--QEMEKYDWRAATRTIRNEQYNAAIW 265 (294)
Q Consensus 212 ~~d~~~l~~~i~~ll~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~l~~~~~~ 265 (294)
+.+.++++++|.++++. +.++.+.+.+. +..++|+|++.+..+. +.|+.++.
T Consensus 536 ~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~-~A~~~Al~ 589 (590)
T cd03793 536 DESVQQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYR-KARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhh
Confidence 34577888888888744 45555655554 6667899999999998 78877653
No 71
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.91 E-value=3.1e-24 Score=196.46 Aligned_cols=226 Identities=20% Similarity=0.225 Sum_probs=169.2
Q ss_pred hCCeEEecchhhHHHHHHhc---------------cCCcCceEEeeccccCCCCCCCccchH---HHHHhhcCCCCCceE
Q 022615 33 AADLTLVPSVAIGKDLEAAR---------------VTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLI 94 (294)
Q Consensus 33 ~ad~ii~~s~~~~~~~~~~~---------------~~~~~~i~~i~~gvd~~~~~~~~~~~~---~~~~~~~~~~~~~~i 94 (294)
.+|.|-+.+....+.+.+.- .....++.++|+|||.+.|.+...... ..........++++|
T Consensus 203 ~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~lI 282 (797)
T PLN03063 203 TADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFAGRKVI 282 (797)
T ss_pred cCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcCCCeEE
Confidence 67777777777776665510 112246889999999988765332211 111111122366789
Q ss_pred EEeecccccccHHHHHHHHHhC----CCc----EEEEEc-----CCccHHHHHhhhcCC--------------CeE-EEe
Q 022615 95 VHVGRLGVEKSLDFLKRVMDRL----PEA----RIAFIG-----DGPYREELEKMFTGM--------------PAV-FTG 146 (294)
Q Consensus 95 ~~~G~~~~~k~~~~l~~~~~~~----~~~----~l~i~G-----~~~~~~~~~~~~~~~--------------~v~-~~g 146 (294)
+++|++.+.||+..+++|++.+ |++ .|+.++ .++..+.+++.+.+. .|. +.+
T Consensus 283 l~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~ 362 (797)
T PLN03063 283 LGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDC 362 (797)
T ss_pred EEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecC
Confidence 9999999999999999998765 554 344332 333444443333211 133 334
Q ss_pred cccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCC----EEeecCCCcccccccCCCCcceeecCCCCHHHHHHHH
Q 022615 147 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 222 (294)
Q Consensus 147 ~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~p----vI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i 222 (294)
.++.+++..+|+.||++++||..||+|++++||||||+| +|+|+.+|..+.+ +..|++++|.|+++++++|
T Consensus 363 ~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l-----~~~allVnP~D~~~lA~AI 437 (797)
T PLN03063 363 SVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL-----GAGALLVNPWNITEVSSAI 437 (797)
T ss_pred CCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhhh-----cCCeEEECCCCHHHHHHHH
Confidence 788899999999999999999999999999999999999 9999999888877 5679999999999999999
Q ss_pred HHHhh-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 022615 223 EPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 264 (294)
Q Consensus 223 ~~ll~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~ 264 (294)
.+++. +++++++..+..++.+.+++|...++.+++ -++++.
T Consensus 438 ~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~-~l~~~~ 479 (797)
T PLN03063 438 KEALNMSDEERETRHRHNFQYVKTHSAQKWADDFMS-ELNDII 479 (797)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHHH-HHHHHh
Confidence 99998 777888888889999999999999999994 445544
No 72
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.91 E-value=3.3e-23 Score=177.56 Aligned_cols=218 Identities=14% Similarity=0.189 Sum_probs=167.7
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccccc
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 105 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~ 105 (294)
...|+.+.+|.++++|+.+++.+.+. +.+++++.+++++++.....+.......+.+.+ ..++.++|+++|+....++
T Consensus 143 ~~~w~~~~~d~~~~~s~~~~~~l~~~-g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~g-l~~~~~~il~~Gg~~g~~~ 220 (382)
T PLN02605 143 HPTWFHKGVTRCFCPSEEVAKRALKR-GLEPSQIRVYGLPIRPSFARAVRPKDELRRELG-MDEDLPAVLLMGGGEGMGP 220 (382)
T ss_pred CcccccCCCCEEEECCHHHHHHHHHc-CCCHHHEEEECcccCHhhccCCCCHHHHHHHcC-CCCCCcEEEEECCCccccc
Confidence 34677889999999999999999876 577889999999998765543333333444433 3456788999999888899
Q ss_pred HHHHHHHHHhC--------CCcE-EEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchH
Q 022615 106 LDFLKRVMDRL--------PEAR-IAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 175 (294)
Q Consensus 106 ~~~l~~~~~~~--------~~~~-l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~ 175 (294)
+..+++++... ++.+ ++++|.+. ..+.+++.....+|.+.|++ +++.++|+.||+++.++ .|++
T Consensus 221 ~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~--~~~~~l~~aaDv~V~~~----g~~t 294 (382)
T PLN02605 221 LEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFV--TNMEEWMGACDCIITKA----GPGT 294 (382)
T ss_pred HHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEecc--ccHHHHHHhCCEEEECC----Ccch
Confidence 99988888642 4565 66778764 34555554334579999999 68999999999999865 3789
Q ss_pred HHHHHhcCCCEEeecC------CCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHhCCH
Q 022615 176 VLEAMSSGIPVVGVRA------GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAARQEMEKYDW 248 (294)
Q Consensus 176 ~~Ea~a~G~pvI~~~~------~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~s~ 248 (294)
++|||+||+|+|+++. ++. +++ .+.+.|+.. .|+++++++|.+++.+ ++.+++|++++++.....+.
T Consensus 295 i~EAma~g~PvI~~~~~pgqe~gn~-~~i---~~~g~g~~~--~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~ 368 (382)
T PLN02605 295 IAEALIRGLPIILNGYIPGQEEGNV-PYV---VDNGFGAFS--ESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAV 368 (382)
T ss_pred HHHHHHcCCCEEEecCCCccchhhH-HHH---HhCCceeec--CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchH
Confidence 9999999999999984 333 334 345556554 6999999999999988 88899999999998888888
Q ss_pred HHHHHHHHH
Q 022615 249 RAATRTIRN 257 (294)
Q Consensus 249 ~~~~~~~~~ 257 (294)
+.+++.+.+
T Consensus 369 ~~i~~~l~~ 377 (382)
T PLN02605 369 FDIVHDLHE 377 (382)
T ss_pred HHHHHHHHH
Confidence 888877763
No 73
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.91 E-value=3.6e-23 Score=180.02 Aligned_cols=226 Identities=17% Similarity=0.208 Sum_probs=163.1
Q ss_pred HHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCcc-chHHHHHhhcCCCCCceEEEeeccc
Q 022615 23 MWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR-SSEMRWRLSNGEPDKPLIVHVGRLG 101 (294)
Q Consensus 23 ~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~G~~~ 101 (294)
+..+.+++++.+|.|++.|+..++.+.+.+ .+++ +.+++|+ +.+...+... ......+.... +++.+++++|+.
T Consensus 168 ~~~~~r~~~~~~d~ii~~S~~~~~~l~~~g-~~~~-i~vi~n~-~~d~~~~~~~~~~~~~~r~~~~-~~~~vil~~~~~- 242 (425)
T PRK05749 168 FKRFYRLLFKNIDLVLAQSEEDAERFLALG-AKNE-VTVTGNL-KFDIEVPPELAARAATLRRQLA-PNRPVWIAASTH- 242 (425)
T ss_pred HHHHHHHHHHhCCEEEECCHHHHHHHHHcC-CCCC-cEecccc-cccCCCChhhHHHHHHHHHHhc-CCCcEEEEeCCC-
Confidence 456888999999999999999999998854 5555 8888884 3322222111 11111111112 456677887754
Q ss_pred ccccHHHHHHHHHhC----CCcEEEEEcCCccH-HHHHhhhcCCCe-----------------EEEecccchhHHHHHhc
Q 022615 102 VEKSLDFLKRVMDRL----PEARIAFIGDGPYR-EELEKMFTGMPA-----------------VFTGMLLGEELSQAYAS 159 (294)
Q Consensus 102 ~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~-~~~~~~~~~~~v-----------------~~~g~~~~~~~~~~~~~ 159 (294)
.++.+.++++++.+ |+++|+|+|.|+.+ +.+++.+++.++ .+.+. .+++..+|+.
T Consensus 243 -~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~--~~el~~~y~~ 319 (425)
T PRK05749 243 -EGEEELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT--MGELGLLYAI 319 (425)
T ss_pred -chHHHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec--HHHHHHHHHh
Confidence 57788889988654 78999999999876 677777665432 22222 2689999999
Q ss_pred CCEEEe-ecCCCCcchHHHHHHhcCCCEEeecC-CCcccccccCCC-CcceeecCCCCHHHHHHHHHHHhhChHHHHHHH
Q 022615 160 GDVFVM-PSESETLGLVVLEAMSSGIPVVGVRA-GGIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 236 (294)
Q Consensus 160 ad~~l~-ps~~e~~~~~~~Ea~a~G~pvI~~~~-~~~~e~~~~~~~-~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~ 236 (294)
||++++ +|..|++|.+++|||+||+|||+++. ++..+.. +. ..+|.++.+.|+++++++|..+++|++.+++|+
T Consensus 320 aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~---~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~ 396 (425)
T PRK05749 320 ADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIF---ERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYG 396 (425)
T ss_pred CCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHH---HHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHH
Confidence 999655 67779999999999999999999764 4455554 22 245777888899999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Q 022615 237 QAARQEMEKYDWRAATRTIRNEQYNA 262 (294)
Q Consensus 237 ~~~~~~~~~~s~~~~~~~~~~~l~~~ 262 (294)
+++++.+++. ...+++++ .+++.
T Consensus 397 ~~a~~~~~~~--~~~~~~~~-~~l~~ 419 (425)
T PRK05749 397 EAGVAFLKQN--QGALQRTL-QLLEP 419 (425)
T ss_pred HHHHHHHHhC--ccHHHHHH-HHHHH
Confidence 9999998654 24555555 34443
No 74
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.90 E-value=2.8e-22 Score=168.49 Aligned_cols=200 Identities=15% Similarity=0.112 Sum_probs=152.6
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE 103 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 103 (294)
+.+++++++++|.++++|+.+++.+.+. +.+..++.+++++.+.....+. . ..+..+.++|+|+++..
T Consensus 114 ~~~~~~~~~~aD~iI~~S~~~~~~l~~~-g~~~~~i~~~~~~~~~~~~~~~--~---------~~~~~~~i~yaG~l~k~ 181 (333)
T PRK09814 114 MKEEIDMLNLADVLIVHSKKMKDRLVEE-GLTTDKIIVQGIFDYLNDIELV--K---------TPSFQKKINFAGNLEKS 181 (333)
T ss_pred hHHHHHHHHhCCEEEECCHHHHHHHHHc-CCCcCceEeccccccccccccc--c---------cccCCceEEEecChhhc
Confidence 5778999999999999999999999875 4555678777765543211110 0 12245689999999844
Q ss_pred ccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC-----------CCCc
Q 022615 104 KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-----------SETL 172 (294)
Q Consensus 104 k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~-----------~e~~ 172 (294)
..+ .+ ..++++|+++|.|+... ....+|++.|+++.+++..+|+. |+++.+.. .-.+
T Consensus 182 ~~l---~~---~~~~~~l~i~G~g~~~~-----~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~ 249 (333)
T PRK09814 182 PFL---KN---WSQGIKLTVFGPNPEDL-----ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNN 249 (333)
T ss_pred hHH---Hh---cCCCCeEEEECCCcccc-----ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccc
Confidence 321 11 34679999999987644 22348999999999999999998 76665432 1367
Q ss_pred chHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHH
Q 022615 173 GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAAT 252 (294)
Q Consensus 173 ~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~ 252 (294)
|.++.||||||+|||+++.++..+++ +++.+|++++ +.+++.+++..+ +++.+.+|++++++..+++.--..+
T Consensus 250 P~K~~~ymA~G~PVI~~~~~~~~~~V---~~~~~G~~v~--~~~el~~~l~~~--~~~~~~~m~~n~~~~~~~~~~g~~~ 322 (333)
T PRK09814 250 PHKLSLYLAAGLPVIVWSKAAIADFI---VENGLGFVVD--SLEELPEIIDNI--TEEEYQEMVENVKKISKLLRNGYFT 322 (333)
T ss_pred hHHHHHHHHCCCCEEECCCccHHHHH---HhCCceEEeC--CHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhcchhH
Confidence 99999999999999999999999999 8899999998 788999999886 4577899999999987665444444
Q ss_pred HH
Q 022615 253 RT 254 (294)
Q Consensus 253 ~~ 254 (294)
++
T Consensus 323 ~~ 324 (333)
T PRK09814 323 KK 324 (333)
T ss_pred HH
Confidence 33
No 75
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.90 E-value=4.5e-22 Score=170.80 Aligned_cols=221 Identities=16% Similarity=0.180 Sum_probs=163.9
Q ss_pred HHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccH
Q 022615 27 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSL 106 (294)
Q Consensus 27 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~ 106 (294)
.+|+++++|.++++|+.+++.+.+. +.+++++.+++++++.... +.......+.+.....++..++++.|+.+..|++
T Consensus 141 ~~~~~~~ad~i~~~s~~~~~~l~~~-gi~~~ki~v~G~p~~~~f~-~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~ 218 (380)
T PRK13609 141 KIWVHREVDRYFVATDHVKKVLVDI-GVPPEQVVETGIPIRSSFE-LKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNV 218 (380)
T ss_pred cccccCCCCEEEECCHHHHHHHHHc-CCChhHEEEECcccChHHc-CcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCH
Confidence 3467789999999999999999885 5677889888776654322 2222223333333323334566677888888999
Q ss_pred HHHHHHHHhCCCcEEEEE-cCC-ccHHHHHhhhcCC--CeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhc
Q 022615 107 DFLKRVMDRLPEARIAFI-GDG-PYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 182 (294)
Q Consensus 107 ~~l~~~~~~~~~~~l~i~-G~~-~~~~~~~~~~~~~--~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~ 182 (294)
..+++++...++++++++ |.+ ...+.++++.... +|+++|++ +++.++|+.||+++. ++.|.+++|||+|
T Consensus 219 ~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~--~~~~~l~~~aD~~v~----~~gg~t~~EA~a~ 292 (380)
T PRK13609 219 KELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYV--ENIDELFRVTSCMIT----KPGGITLSEAAAL 292 (380)
T ss_pred HHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEech--hhHHHHHHhccEEEe----CCCchHHHHHHHh
Confidence 999999987788998876 433 3456666665433 69999999 679999999999884 3458899999999
Q ss_pred CCCEEeec-CCCcc----cccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 022615 183 GIPVVGVR-AGGIP----DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRN 257 (294)
Q Consensus 183 G~pvI~~~-~~~~~----e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 257 (294)
|+|+|+++ .++.. +++ ...|..+...|.++++++|.++++|++.+++|++++++..+.++++.+++.++
T Consensus 293 g~PvI~~~~~~g~~~~n~~~~-----~~~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~- 366 (380)
T PRK13609 293 GVPVILYKPVPGQEKENAMYF-----ERKGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDIL- 366 (380)
T ss_pred CCCEEECCCCCCcchHHHHHH-----HhCCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHH-
Confidence 99999975 44321 233 12344444569999999999999999999999999988777899999999988
Q ss_pred HHHH
Q 022615 258 EQYN 261 (294)
Q Consensus 258 ~l~~ 261 (294)
.++.
T Consensus 367 ~~~~ 370 (380)
T PRK13609 367 AENH 370 (380)
T ss_pred Hhhh
Confidence 4443
No 76
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.89 E-value=6.9e-22 Score=169.66 Aligned_cols=221 Identities=14% Similarity=0.234 Sum_probs=162.5
Q ss_pred HHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHH
Q 022615 28 KFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLD 107 (294)
Q Consensus 28 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~ 107 (294)
+|+.+.+|.+++.|+.+++.+.+. |.+++++.+++++++.....+ ......+.+.+...++..++++.|+++..|+++
T Consensus 142 ~w~~~~~d~~~v~s~~~~~~l~~~-gi~~~ki~v~GiPv~~~f~~~-~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~ 219 (391)
T PRK13608 142 NWITPYSTRYYVATKETKQDFIDV-GIDPSTVKVTGIPIDNKFETP-IDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFD 219 (391)
T ss_pred ccccCCCCEEEECCHHHHHHHHHc-CCCHHHEEEECeecChHhccc-ccHHHHHHHcCCCCCCCEEEEECCCcccchhHH
Confidence 355689999999999999999875 567789999888877543322 222233333333233444567889999889999
Q ss_pred HHHHHH-HhCCCcEEEEE-cCCc-cHHHHHhhhc-CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcC
Q 022615 108 FLKRVM-DRLPEARIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG 183 (294)
Q Consensus 108 ~l~~~~-~~~~~~~l~i~-G~~~-~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G 183 (294)
.+++++ +..++++++++ |.+. ..+.+++... ..++.+.|++ +++.++|+.||+++.. +.|.++.|||++|
T Consensus 220 ~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~--~~~~~~~~~aDl~I~k----~gg~tl~EA~a~G 293 (391)
T PRK13608 220 TMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYT--KHMNEWMASSQLMITK----PGGITISEGLARC 293 (391)
T ss_pred HHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEecc--chHHHHHHhhhEEEeC----CchHHHHHHHHhC
Confidence 999885 44577888655 5443 2344544332 3479999998 7899999999999963 4588999999999
Q ss_pred CCEEeecC-CC----cccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 022615 184 IPVVGVRA-GG----IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNE 258 (294)
Q Consensus 184 ~pvI~~~~-~~----~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 258 (294)
+|+|+++. ++ ...++ .+.+.|+. ..|.++++++|..+++|++.+++|++++++..+.++++.+++.+. .
T Consensus 294 ~PvI~~~~~pgqe~~N~~~~---~~~G~g~~--~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~-~ 367 (391)
T PRK13608 294 IPMIFLNPAPGQELENALYF---EEKGFGKI--ADTPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLL-D 367 (391)
T ss_pred CCEEECCCCCCcchhHHHHH---HhCCcEEE--eCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHH-H
Confidence 99999853 32 11222 23444544 458999999999999999999999999999888899999999998 5
Q ss_pred HHHH
Q 022615 259 QYNA 262 (294)
Q Consensus 259 l~~~ 262 (294)
+++.
T Consensus 368 l~~~ 371 (391)
T PRK13608 368 LIGH 371 (391)
T ss_pred Hhhh
Confidence 5554
No 77
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.88 E-value=6.1e-22 Score=181.67 Aligned_cols=226 Identities=20% Similarity=0.289 Sum_probs=164.5
Q ss_pred HhCCeEEecchhhHHHHHHh----cc-----------CCcCceEEeeccccCCCCCCCccchHH---HHHhhcCCCCCce
Q 022615 32 RAADLTLVPSVAIGKDLEAA----RV-----------TAANKIRIWKKGVDSESFHPRFRSSEM---RWRLSNGEPDKPL 93 (294)
Q Consensus 32 ~~ad~ii~~s~~~~~~~~~~----~~-----------~~~~~i~~i~~gvd~~~~~~~~~~~~~---~~~~~~~~~~~~~ 93 (294)
-.+|.|-+.+....+.+.+. .+ ....++.++|+|+|.+.|.+....... ........+++++
T Consensus 188 l~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~~ 267 (726)
T PRK14501 188 LGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDLRGRKI 267 (726)
T ss_pred hcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHcCCCEE
Confidence 37888888887766665442 11 112368899999999988654322211 1111112346679
Q ss_pred EEEeecccccccHHHHHHHHHhC----CC----cEEEEEcCC-----ccHHHHHhhhcCC--------------C-eEEE
Q 022615 94 IVHVGRLGVEKSLDFLKRVMDRL----PE----ARIAFIGDG-----PYREELEKMFTGM--------------P-AVFT 145 (294)
Q Consensus 94 i~~~G~~~~~k~~~~l~~~~~~~----~~----~~l~i~G~~-----~~~~~~~~~~~~~--------------~-v~~~ 145 (294)
|+++||+.+.||+..+++|++.+ |+ ++|+++|.+ +..+.+++.+.+. . +.+.
T Consensus 268 il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~ 347 (726)
T PRK14501 268 ILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFY 347 (726)
T ss_pred EEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEe
Confidence 99999999999999999999764 54 678888632 2223333322211 1 3467
Q ss_pred ecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCC-----CEEeecCCCcccccccCCCCcceeecCCCCHHHHHH
Q 022615 146 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI-----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLS 220 (294)
Q Consensus 146 g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~-----pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~ 220 (294)
|.++.+++..+|+.||++++||..||+|++++|||+||+ ||++...|+..++. .|++++|.|++++++
T Consensus 348 ~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~-------~~llv~P~d~~~la~ 420 (726)
T PRK14501 348 RSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA-------EALLVNPNDIEGIAA 420 (726)
T ss_pred CCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHHhC-------cCeEECCCCHHHHHH
Confidence 889999999999999999999999999999999999955 55665667666654 388999999999999
Q ss_pred HHHHHhhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 022615 221 KLEPLLYNQ-ELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 265 (294)
Q Consensus 221 ~i~~ll~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~ 265 (294)
+|.+++.++ +++.+...++++.+.+|||+..+++++ ..++++..
T Consensus 421 ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l-~~l~~~~~ 465 (726)
T PRK14501 421 AIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFL-DELREAAE 465 (726)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHh
Confidence 999999854 455555667888888999999999999 56666543
No 78
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.87 E-value=8.5e-21 Score=161.27 Aligned_cols=208 Identities=19% Similarity=0.208 Sum_probs=156.9
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
...+++++.+|.++++|+..++. .++.++.+++||+|.+.+.+... +.+.. ..++.+++++.|+....+
T Consensus 126 ~~~~~~~~~~~~vi~~s~~~~~~------~~~~~~~~i~n~v~~~~~~~~~~----~~~~~-~~~~~~~i~~~~g~~~~~ 194 (350)
T cd03785 126 LANRLLARFADRVALSFPETAKY------FPKDKAVVTGNPVREEILALDRE----RARLG-LRPGKPTLLVFGGSQGAR 194 (350)
T ss_pred HHHHHHHHhhCEEEEcchhhhhc------CCCCcEEEECCCCchHHhhhhhh----HHhcC-CCCCCeEEEEECCcHhHH
Confidence 45677788899999999988876 24578999999999876654211 22222 234556677777665556
Q ss_pred cHH-HHHHHHHhCC--CcEE-EEEcCCccHHHHHhhhcC--CCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHH
Q 022615 105 SLD-FLKRVMDRLP--EARI-AFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLE 178 (294)
Q Consensus 105 ~~~-~l~~~~~~~~--~~~l-~i~G~~~~~~~~~~~~~~--~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~E 178 (294)
+.. .++++++.++ ++.+ .++|.+ ..+.+++...+ .++.+.|++ +++.++|+.||++++++. +++++|
T Consensus 195 ~~~~~l~~a~~~l~~~~~~~~~i~G~g-~~~~l~~~~~~~~~~v~~~g~~--~~~~~~l~~ad~~v~~sg----~~t~~E 267 (350)
T cd03785 195 AINEAVPEALAELLRKRLQVIHQTGKG-DLEEVKKAYEELGVNYEVFPFI--DDMAAAYAAADLVISRAG----ASTVAE 267 (350)
T ss_pred HHHHHHHHHHHHhhccCeEEEEEcCCc-cHHHHHHHHhccCCCeEEeehh--hhHHHHHHhcCEEEECCC----HhHHHH
Confidence 654 4557777764 5554 467887 55666666654 479999998 999999999999998652 688999
Q ss_pred HHhcCCCEEeecCCC--------cccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCH
Q 022615 179 AMSSGIPVVGVRAGG--------IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDW 248 (294)
Q Consensus 179 a~a~G~pvI~~~~~~--------~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~ 248 (294)
||++|+|+|+++.++ ..+.+ .+..+|+++++. |.++++++|..++++++.++++++++++.++++.-
T Consensus 268 am~~G~Pvv~~~~~~~~~~~~~~~~~~l---~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~ 344 (350)
T cd03785 268 LAALGLPAILIPLPYAADDHQTANARAL---VKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLARPDAA 344 (350)
T ss_pred HHHhCCCEEEeecCCCCCCcHHHhHHHH---HhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence 999999999987653 13455 456789999876 89999999999999999999999999988877777
Q ss_pred HHHHH
Q 022615 249 RAATR 253 (294)
Q Consensus 249 ~~~~~ 253 (294)
+++++
T Consensus 345 ~~i~~ 349 (350)
T cd03785 345 ERIAD 349 (350)
T ss_pred HHHHh
Confidence 76653
No 79
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=1.4e-20 Score=160.21 Aligned_cols=213 Identities=23% Similarity=0.216 Sum_probs=160.0
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
...+++++.+|.+++.++... .+ .+..++.++|||++.+.+.+... ..+.. ..++.++++++|+....+
T Consensus 128 ~~~r~~~~~~d~ii~~~~~~~---~~---~~~~~i~vi~n~v~~~~~~~~~~----~~~~~-~~~~~~~i~~~gg~~~~~ 196 (357)
T PRK00726 128 LANKLLARFAKKVATAFPGAF---PE---FFKPKAVVTGNPVREEILALAAP----PARLA-GREGKPTLLVVGGSQGAR 196 (357)
T ss_pred HHHHHHHHHhchheECchhhh---hc---cCCCCEEEECCCCChHhhcccch----hhhcc-CCCCCeEEEEECCcHhHH
Confidence 457788999999999987542 22 45689999999999876543211 11111 224566788888887777
Q ss_pred cHHHHH-HHHHhCCC--cEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHh
Q 022615 105 SLDFLK-RVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 181 (294)
Q Consensus 105 ~~~~l~-~~~~~~~~--~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a 181 (294)
+...++ ++++++.+ ..+.++|.|...+..+......+|.+.|++ +++.++|+.||+++.++ .+++++|||+
T Consensus 197 ~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~i~~~----g~~~~~Ea~~ 270 (357)
T PRK00726 197 VLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFI--DDMAAAYAAADLVICRA----GASTVAELAA 270 (357)
T ss_pred HHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehH--hhHHHHHHhCCEEEECC----CHHHHHHHHH
Confidence 765444 88877644 456778988754433333112238899998 89999999999999865 2688999999
Q ss_pred cCCCEEeecCCCc--------ccccccCCCCcceeecCCCC--HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHH
Q 022615 182 SGIPVVGVRAGGI--------PDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAA 251 (294)
Q Consensus 182 ~G~pvI~~~~~~~--------~e~~~~~~~~~~g~~~~~~d--~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~ 251 (294)
+|+|+|+++.++. .+.+ .+.+.|+++++.| +++++++|.++++|++.+++|++++++..++++.+.+
T Consensus 271 ~g~Pvv~~~~~~~~~~~~~~~~~~i---~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (357)
T PRK00726 271 AGLPAILVPLPHAADDHQTANARAL---VDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERL 347 (357)
T ss_pred hCCCEEEecCCCCCcCcHHHHHHHH---HHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHH
Confidence 9999999876421 2445 5677899998877 9999999999999999999999999998888999999
Q ss_pred HHHHHH
Q 022615 252 TRTIRN 257 (294)
Q Consensus 252 ~~~~~~ 257 (294)
++.+.+
T Consensus 348 ~~~~~~ 353 (357)
T PRK00726 348 ADLIEE 353 (357)
T ss_pred HHHHHH
Confidence 988873
No 80
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.84 E-value=1.3e-19 Score=153.43 Aligned_cols=237 Identities=20% Similarity=0.246 Sum_probs=177.4
Q ss_pred cccHHHHHHHHHHhCCeEEecchhhHHHHHHhcc-CCcCceEEeeccccCCCCCCCccchHHHHH----hh-cCCCCCce
Q 022615 20 VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARV-TAANKIRIWKKGVDSESFHPRFRSSEMRWR----LS-NGEPDKPL 93 (294)
Q Consensus 20 ~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~-~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~----~~-~~~~~~~~ 93 (294)
...+-+++......+|.+++.|..++..++..+. ....++.+.+.++|.+.+.+.........+ .. .....+..
T Consensus 196 ~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~ 275 (495)
T KOG0853|consen 196 RHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRF 275 (495)
T ss_pred hhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeeeecccceE
Confidence 3445567778888999999999999999988764 333447888888887766541111110000 01 11222556
Q ss_pred EEEeecccccccHHHHHHHHHhC---------CCcEEEEEcCC-------c---cHHHHHhhhcCC-----CeEEEeccc
Q 022615 94 IVHVGRLGVEKSLDFLKRVMDRL---------PEARIAFIGDG-------P---YREELEKMFTGM-----PAVFTGMLL 149 (294)
Q Consensus 94 i~~~G~~~~~k~~~~l~~~~~~~---------~~~~l~i~G~~-------~---~~~~~~~~~~~~-----~v~~~g~~~ 149 (294)
+.-+.++.+.|++..+++++..+ ++.++.++|+. . +.+.+.+++++. .+.++...+
T Consensus 276 ~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~ 355 (495)
T KOG0853|consen 276 FPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTT 355 (495)
T ss_pred eeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCc
Confidence 77788889999999999988665 34678888832 1 233445555544 266667777
Q ss_pred chhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHH---HHHHHHHHHh
Q 022615 150 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLD---DCLSKLEPLL 226 (294)
Q Consensus 150 ~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~---~l~~~i~~ll 226 (294)
+.+-..++..+.+++.....|.||.+.+|||+||+|||+++.||..|++ .++.+|+++++ +.+ .+++++.++.
T Consensus 356 ~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV---~~~~tG~l~dp-~~e~~~~~a~~~~kl~ 431 (495)
T KOG0853|consen 356 RVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIV---VHGVTGLLIDP-GQEAVAELADALLKLR 431 (495)
T ss_pred hHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEE---EcCCcceeeCC-chHHHHHHHHHHHHHh
Confidence 7777788888887766544599999999999999999999999999999 99999999999 555 6999999999
Q ss_pred hChHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Q 022615 227 YNQELRETMGQAARQEMEK-YDWRAATRTIRNEQYN 261 (294)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~l~~ 261 (294)
.|++.+.+|++++++.+++ |+|..+.+++. .+..
T Consensus 432 ~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~-~~~~ 466 (495)
T KOG0853|consen 432 RDPELWARMGKNGLKRVKEMFSWQHYSERIA-SVLG 466 (495)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHhH
Confidence 9999999999999999966 99988888887 4443
No 81
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=1.2e-18 Score=147.21 Aligned_cols=218 Identities=41% Similarity=0.663 Sum_probs=172.9
Q ss_pred hCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCC-CceEEEeecccccccHHHHHH
Q 022615 33 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPD-KPLIVHVGRLGVEKSLDFLKR 111 (294)
Q Consensus 33 ~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~G~~~~~k~~~~l~~ 111 (294)
..+.+++.+......+..... ..++.++|++++...+.+... ...... ...++++|++.+.|+++.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~g~~~~~k~~~~~i~ 219 (381)
T COG0438 150 LADRVIAVSPALKELLEALGV--PNKIVVIPNGIDTEKFAPARI--------GLLPEGGKFVVLYVGRLDPEKGLDLLIE 219 (381)
T ss_pred cccEEEECCHHHHHHHHHhCC--CCCceEecCCcCHHHcCcccc--------CCCcccCceEEEEeeccChhcCHHHHHH
Confidence 378888888888676666543 237899999999887764200 001112 368999999999999999999
Q ss_pred HHHhCCC----cEEEEEcCCccH-HHHHhhhc----CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhc
Q 022615 112 VMDRLPE----ARIAFIGDGPYR-EELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 182 (294)
Q Consensus 112 ~~~~~~~----~~l~i~G~~~~~-~~~~~~~~----~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~ 182 (294)
++..++. +.+.++|.+... ..+.+... ..++.+.|.++.+++..+++.||++++|+..|++|..++|||++
T Consensus 220 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~ 299 (381)
T COG0438 220 AAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAA 299 (381)
T ss_pred HHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhc
Confidence 9988743 789999988752 33333333 34689999998888999999999999999889999999999999
Q ss_pred CCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Q 022615 183 GIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 183 G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~~ 261 (294)
|+|||+++.++..+++ .++..|+++...+.+++++++..++++++.++.+.+.+.+.+ +.|+|+..++.+. .++.
T Consensus 300 g~pvi~~~~~~~~e~~---~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 375 (381)
T COG0438 300 GTPVIASDVGGIPEVV---EDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLL-ELYE 375 (381)
T ss_pred CCcEEECCCCChHHHh---cCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHH
Confidence 9999999999999999 556567777766899999999999998877778877555555 5799999999988 6666
Q ss_pred HHH
Q 022615 262 AAI 264 (294)
Q Consensus 262 ~~~ 264 (294)
...
T Consensus 376 ~~~ 378 (381)
T COG0438 376 ELL 378 (381)
T ss_pred HHH
Confidence 553
No 82
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=1e-18 Score=150.07 Aligned_cols=239 Identities=23% Similarity=0.280 Sum_probs=182.4
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHH-hc--------cCCcCceEEeeccccCCCCCCCccch------------H----
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEA-AR--------VTAANKIRIWKKGVDSESFHPRFRSS------------E---- 79 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~-~~--------~~~~~~i~~i~~gvd~~~~~~~~~~~------------~---- 79 (294)
.++|--+..+|.|.++|....+.+.. .+ .....++.-|-||+|.+.++|..... .
T Consensus 200 ~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk 279 (487)
T COG0297 200 SFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENK 279 (487)
T ss_pred hhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHH
Confidence 57788888999999999998888761 11 11235788999999999988754430 0
Q ss_pred --HHHHhhcC-CCCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCCc--cHHHHHhhhcCC--CeEEEecccc
Q 022615 80 --MRWRLSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PAVFTGMLLG 150 (294)
Q Consensus 80 --~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~~--~~~~~~~~~~~~--~v~~~g~~~~ 150 (294)
...+.... ..+.+.+.++||+..+||++.+++++..+ ...+++++|.|. ....+..+.+.. ++...-..+.
T Consensus 280 ~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~ 359 (487)
T COG0297 280 VALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDE 359 (487)
T ss_pred HHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecH
Confidence 11112222 23568999999999999999999999876 458999999882 223444444433 3444445555
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccC-----CCCcceeecCCCCHHHHHHHHHHH
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED-----QDGKIGYLFNPGDLDDCLSKLEPL 225 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~-----~~~~~g~~~~~~d~~~l~~~i~~l 225 (294)
.-...+++.||++++||++|++|++-++||.+|+++|+..+||..+.+.+. ....+|+++.+.++++++.+|...
T Consensus 360 ~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA 439 (487)
T COG0297 360 PLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRA 439 (487)
T ss_pred HHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHH
Confidence 667799999999999999999999999999999999999999999999331 125799999999999999999987
Q ss_pred hh---ChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Q 022615 226 LY---NQEL-RETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWF 266 (294)
Q Consensus 226 l~---~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~ 266 (294)
+. +++. ++.+..++.. ..|+|+..++++. ++|+.++..
T Consensus 440 ~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y~-~lY~~~~~~ 481 (487)
T COG0297 440 LVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEYV-ELYKPLLSK 481 (487)
T ss_pred HHHhhCCHHHHHHHHHhhcc--cccCchhHHHHHH-HHHHHHhcc
Confidence 64 4444 6666666555 5799999999999 899998653
No 83
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.83 E-value=4.5e-19 Score=152.93 Aligned_cols=224 Identities=18% Similarity=0.120 Sum_probs=169.2
Q ss_pred hCCeEEecchhhHHHHHHhc----cC--------------------------------CcCceEEeeccccCCCCCCCcc
Q 022615 33 AADLTLVPSVAIGKDLEAAR----VT--------------------------------AANKIRIWKKGVDSESFHPRFR 76 (294)
Q Consensus 33 ~ad~ii~~s~~~~~~~~~~~----~~--------------------------------~~~~i~~i~~gvd~~~~~~~~~ 76 (294)
.+|.|-+.+....+.|.+.- +. ..-++.++|.|||++.|.+...
T Consensus 188 ~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~ 267 (487)
T TIGR02398 188 CCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALA 267 (487)
T ss_pred cCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhc
Confidence 78999998888777775521 10 1113688999999998855322
Q ss_pred ch---HHHHHhhcCCCCCceEEEeecccccccHHHHHHHHHhC----C----CcEEEEEcCCc---------cHHHHHhh
Q 022615 77 SS---EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P----EARIAFIGDGP---------YREELEKM 136 (294)
Q Consensus 77 ~~---~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~----~----~~~l~i~G~~~---------~~~~~~~~ 136 (294)
.. +..........++++|+.++|+++.||+...++|++++ | ++.|+++|.++ ....++++
T Consensus 268 ~~~~~~~~~~lr~~~~~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~ 347 (487)
T TIGR02398 268 AASIREMMERIRSELAGVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQA 347 (487)
T ss_pred CchHHHHHHHHHHHcCCceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHH
Confidence 11 11111111223678999999999999999999998765 5 37888888643 22333443
Q ss_pred hcCC-----------CeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCC----CEEeecCCCcccccccC
Q 022615 137 FTGM-----------PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI----PVVGVRAGGIPDIIPED 201 (294)
Q Consensus 137 ~~~~-----------~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~----pvI~~~~~~~~e~~~~~ 201 (294)
..+. -+.+.+.++.+++..+|+.||+++.++..||++++..||++|+. |+|.|..+|..+.+
T Consensus 348 v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l--- 424 (487)
T TIGR02398 348 VGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVEL--- 424 (487)
T ss_pred HHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccchhhc---
Confidence 3222 15678999999999999999999999999999999999999988 99999999888666
Q ss_pred CCCcceeecCCCCHHHHHHHHHHHhhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 022615 202 QDGKIGYLFNPGDLDDCLSKLEPLLYNQ-ELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 262 (294)
Q Consensus 202 ~~~~~g~~~~~~d~~~l~~~i~~ll~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~ 262 (294)
..+++++|.|+++++++|.+++..+ +++++.-+..++.+.+++....++.+++.+..+
T Consensus 425 ---~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 425 ---KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFLAAVSPQ 483 (487)
T ss_pred ---CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhc
Confidence 3579999999999999999999865 466666666777788899999999888766443
No 84
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.83 E-value=2.7e-19 Score=151.94 Aligned_cols=206 Identities=19% Similarity=0.253 Sum_probs=148.7
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
...+++++.+|.++++|+.+++.+ +..+++||++...+.+... +.... ..++.++++++|+....|
T Consensus 127 ~~~~~~~~~~d~ii~~~~~~~~~~---------~~~~i~n~v~~~~~~~~~~----~~~~~-~~~~~~~i~~~gg~~~~~ 192 (348)
T TIGR01133 127 LTNKLLSRFAKKVLISFPGAKDHF---------EAVLVGNPVRQEIRSLPVP----RERFG-LREGKPTILVLGGSQGAK 192 (348)
T ss_pred HHHHHHHHHhCeeEECchhHhhcC---------CceEEcCCcCHHHhcccch----hhhcC-CCCCCeEEEEECCchhHH
Confidence 457888999999999999887665 2378999998765543211 11121 234667888998776677
Q ss_pred cHH-HHHHHHHhCC--CcEEEEE-cCCccHHHHHhhhcCCCe-EEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH
Q 022615 105 SLD-FLKRVMDRLP--EARIAFI-GDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 105 ~~~-~l~~~~~~~~--~~~l~i~-G~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea 179 (294)
+.. .++++++.+. +.+++++ |++ ..+.+++.....++ ....+.. .++.++|+.||+++.++ | |++++||
T Consensus 193 ~~~~~l~~a~~~l~~~~~~~~~~~g~~-~~~~l~~~~~~~~l~~~v~~~~-~~~~~~l~~ad~~v~~~---g-~~~l~Ea 266 (348)
T TIGR01133 193 ILNELVPKALAKLAEKGIQIVHQTGKN-DLEKVKNVYQELGIEAIVTFID-ENMAAAYAAADLVISRA---G-ASTVAEL 266 (348)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEECCcc-hHHHHHHHHhhCCceEEecCcc-cCHHHHHHhCCEEEECC---C-hhHHHHH
Confidence 754 4557776663 4566444 544 34666666665543 2334443 38999999999999864 2 6899999
Q ss_pred HhcCCCEEeecCCCc-------ccccccCCCCcceeecCCCC--HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHH
Q 022615 180 MSSGIPVVGVRAGGI-------PDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRA 250 (294)
Q Consensus 180 ~a~G~pvI~~~~~~~-------~e~~~~~~~~~~g~~~~~~d--~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~ 250 (294)
|++|+|+|+++.++. .+++ .++.+|+++++.| +++++++|..+++|++.+++|++++++.+++...++
T Consensus 267 ~~~g~Pvv~~~~~~~~~~~~~~~~~i---~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 343 (348)
T TIGR01133 267 AAAGVPAILIPYPYAADDQYYNAKFL---EDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLAKPDAAKR 343 (348)
T ss_pred HHcCCCEEEeeCCCCccchhhHHHHH---HHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCccHHHH
Confidence 999999999876542 2466 5688999998776 999999999999999999999999988776666665
Q ss_pred HHH
Q 022615 251 ATR 253 (294)
Q Consensus 251 ~~~ 253 (294)
+++
T Consensus 344 i~~ 346 (348)
T TIGR01133 344 IAE 346 (348)
T ss_pred HHh
Confidence 554
No 85
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.81 E-value=2.5e-18 Score=136.75 Aligned_cols=219 Identities=15% Similarity=0.215 Sum_probs=167.5
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
.+..+.-..||.+.+.|.|+.+++.+.... .++.+++.+.+.+.+ .........+...++++|.++|+|
T Consensus 214 ~lY~~~G~~ad~vm~NssWT~nHI~qiW~~--~~~~iVyPPC~~e~l---------ks~~~te~~r~~~ll~l~Q~RPEK 282 (465)
T KOG1387|consen 214 LLYQSAGSKADIVMTNSSWTNNHIKQIWQS--NTCSIVYPPCSTEDL---------KSKFGTEGERENQLLSLAQFRPEK 282 (465)
T ss_pred HHHHhccccceEEEecchhhHHHHHHHhhc--cceeEEcCCCCHHHH---------HHHhcccCCcceEEEEEeecCccc
Confidence 456666678999999999999999999865 467777655444322 222222244567899999999999
Q ss_pred cHHHHHHHHH----hC------CCcEEEEEcCCc---cHHH---HHhhhcC----CCeEEEecccchhHHHHHhcCCEEE
Q 022615 105 SLDFLKRVMD----RL------PEARIAFIGDGP---YREE---LEKMFTG----MPAVFTGMLLGEELSQAYASGDVFV 164 (294)
Q Consensus 105 ~~~~l~~~~~----~~------~~~~l~i~G~~~---~~~~---~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l 164 (294)
+.. +++.+. +. ++++|+++|... +.+. ++++... .+|.|.-.+|.+++..+|+.|.+.+
T Consensus 283 nH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGv 361 (465)
T KOG1387|consen 283 NHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGV 361 (465)
T ss_pred ccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeeh
Confidence 998 444332 11 468999999643 2222 3333332 2599999999999999999999999
Q ss_pred eecCCCCcchHHHHHHhcCCCEEeecCC-CcccccccCCCCcceeecCCCCHHHHHHHHHHHhh-ChHHHHHHHHHHHHH
Q 022615 165 MPSESETLGLVVLEAMSSGIPVVGVRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQE 242 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~G~pvI~~~~~-~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~-~~~~~~~~~~~~~~~ 242 (294)
...+.|.||..+.||||+|+-+|+.+.+ ..-+++.+.....+|++.+ +.++.++++.+++. +.+++..++.+++..
T Consensus 362 h~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~--t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s 439 (465)
T KOG1387|consen 362 HTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP--TDEEYAEAILKIVKLNYDERNMMRRNARKS 439 (465)
T ss_pred hhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC--ChHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999999999999999999888887654 5567775544456888886 88999999999986 777799999999999
Q ss_pred HHhCCHHHHHHHHHH
Q 022615 243 MEKYDWRAATRTIRN 257 (294)
Q Consensus 243 ~~~~s~~~~~~~~~~ 257 (294)
+.+|+-..+.+.+.+
T Consensus 440 ~~RFsE~~F~kd~~~ 454 (465)
T KOG1387|consen 440 LARFGELKFDKDWEN 454 (465)
T ss_pred HHHhhHHHHHHhHhH
Confidence 999998888888874
No 86
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.81 E-value=1.4e-19 Score=132.31 Aligned_cols=127 Identities=31% Similarity=0.536 Sum_probs=93.5
Q ss_pred ceEEEeecccccccHHHHHH-HHHh----CCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEee
Q 022615 92 PLIVHVGRLGVEKSLDFLKR-VMDR----LPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 166 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~-~~~~----~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~p 166 (294)
+++++.|++.+.|+++.+++ +++. .|+++|.|+|.++. .++++ ...+|.++|++ +++.++++.||+++.|
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~-~~~~v~~~g~~--~e~~~~l~~~dv~l~p 77 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL-RRPNVRFHGFV--EELPEILAAADVGLIP 77 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH-HHCTEEEE-S---HHHHHHHHC-SEEEE-
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh-cCCCEEEcCCH--HHHHHHHHhCCEEEEE
Confidence 57899999999999999999 7544 48999999999766 35555 44599999999 7999999999999999
Q ss_pred cC-CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 167 SE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 167 s~-~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
+. .+++|++++|||++|+|||+++. +..++. .....|.++ .+|+++++++|.++++|
T Consensus 78 ~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~---~~~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 78 SRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIV---EEDGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS------SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred eeCCCcCcHHHHHHHHhCCCEEECCc-chhhhe---eecCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 86 67899999999999999999999 566676 445677767 77999999999999865
No 87
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.77 E-value=3e-17 Score=144.01 Aligned_cols=205 Identities=17% Similarity=0.140 Sum_probs=160.0
Q ss_pred HHHhCCeEEecchhhHHHHHHhccCC--cCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEee--ccccccc
Q 022615 30 LHRAADLTLVPSVAIGKDLEAARVTA--ANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG--RLGVEKS 105 (294)
Q Consensus 30 ~~~~ad~ii~~s~~~~~~~~~~~~~~--~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G--~~~~~k~ 105 (294)
-+..+|.+|+.++...+.+...++.. ..++..||.+.- ....+. .......+++++ |+ +.|.
T Consensus 269 ~~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~~~-~~~~~~------------s~r~~~~~I~v~idrL-~ek~ 334 (519)
T TIGR03713 269 SLSRADLIIVDREDIERLLEENYRENYVEFDISRITPFDT-RLRLGQ------------SQQLYETEIGFWIDGL-SDEE 334 (519)
T ss_pred ChhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCccce-EEecCh------------hhcccceEEEEEcCCC-ChHH
Confidence 35688999999988888887766421 134566775432 211111 012334577888 99 9999
Q ss_pred HHHHHHHHH----hCCCcEEEEEcCCccH---HHHHh----hhcC-----------------------------CCeEEE
Q 022615 106 LDFLKRVMD----RLPEARIAFIGDGPYR---EELEK----MFTG-----------------------------MPAVFT 145 (294)
Q Consensus 106 ~~~l~~~~~----~~~~~~l~i~G~~~~~---~~~~~----~~~~-----------------------------~~v~~~ 145 (294)
++.+++++. +.|+++|.+.|.+... +.+.+ +..+ ..|.+.
T Consensus 335 ~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~ 414 (519)
T TIGR03713 335 LQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFT 414 (519)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEE
Confidence 888887774 4589999999976532 23322 2112 368899
Q ss_pred ecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHH
Q 022615 146 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 225 (294)
Q Consensus 146 g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~l 225 (294)
|+.+..++.+.|..+.++|.+|..+|++ ..+||+++|+|+| .-+..+++ .++.+|+++ +|..+++++|..+
T Consensus 415 gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V---~d~~NG~li--~d~~~l~~al~~~ 485 (519)
T TIGR03713 415 TLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYV---EHNKNGYII--DDISELLKALDYY 485 (519)
T ss_pred ecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceee---EcCCCcEEe--CCHHHHHHHHHHH
Confidence 9987779999999999999999999999 9999999999999 43457899 899999999 4999999999999
Q ss_pred hhChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 022615 226 LYNQELRETMGQAARQEMEKYDWRAATRTIRN 257 (294)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 257 (294)
+.+++.++++...+.+.+++||-+++.++|.+
T Consensus 486 L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~ 517 (519)
T TIGR03713 486 LDNLKNWNYSLAYSIKLIDDYSSENIIERLNE 517 (519)
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999999999999999999873
No 88
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.2e-17 Score=129.35 Aligned_cols=232 Identities=18% Similarity=0.253 Sum_probs=175.3
Q ss_pred CcccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeecccc-----CC----CCCCCcc----------c
Q 022615 17 SWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVD-----SE----SFHPRFR----------S 77 (294)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd-----~~----~~~~~~~----------~ 77 (294)
..+.+..+++|+.+-+.||.-+|+++.|++.+.+.+|+. +..+++.-.. .+ .|.+... .
T Consensus 153 h~lV~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q 230 (444)
T KOG2941|consen 153 HPLVRLVRWLEKYFGKLADYNLCVTKAMREDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQ 230 (444)
T ss_pred CchHHHHHHHHHHhhcccccchhhHHHHHHHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccc
Confidence 345677889999999999999999999999999988864 4555543211 11 1111100 0
Q ss_pred hH-----HHHHh------hcCCCCCceEEEeecccccccHHHHHHHHHhC-----------CCcEEEEEcCCccHHHHHh
Q 022615 78 SE-----MRWRL------SNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-----------PEARIAFIGDGPYREELEK 135 (294)
Q Consensus 78 ~~-----~~~~~------~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~-----------~~~~l~i~G~~~~~~~~~~ 135 (294)
.. ...+. ....+...+++....+.++.++..+++|+..+ |.+-++|.|.|+.++...+
T Consensus 231 ~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~ 310 (444)
T KOG2941|consen 231 DKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQ 310 (444)
T ss_pred cchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHH
Confidence 00 00000 01122334677778899999999999999732 6788889999999999999
Q ss_pred hhcCCC---e-EEEecccchhHHHHHhcCCEEEeecC---CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCccee
Q 022615 136 MFTGMP---A-VFTGMLLGEELSQAYASGDVFVMPSE---SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY 208 (294)
Q Consensus 136 ~~~~~~---v-~~~g~~~~~~~~~~~~~ad~~l~ps~---~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~ 208 (294)
.+.+.+ | ....++.-+|.+.++..||+.|+... .--.|+++.+...||+||++-+...+.|.+ +++.||+
T Consensus 311 ~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELV---kh~eNGl 387 (444)
T KOG2941|consen 311 EIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELV---KHGENGL 387 (444)
T ss_pred HHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHH---hcCCCce
Confidence 998775 3 34677888999999999998887533 234699999999999999999999999999 9999999
Q ss_pred ecCCCCHHHHHHHHHHHhh----ChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 022615 209 LFNPGDLDDCLSKLEPLLY----NQELRETMGQAARQEMEKYDWRAATRTIR 256 (294)
Q Consensus 209 ~~~~~d~~~l~~~i~~ll~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 256 (294)
+|. |.+++++.+..++. +.+.+.++.++.++. ++..|+..-++..
T Consensus 388 vF~--Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~-~e~RW~~~W~~~~ 436 (444)
T KOG2941|consen 388 VFE--DSEELAEQLQMLFKNFPDNADELNQLKKNLREE-QELRWDESWERTA 436 (444)
T ss_pred Eec--cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH-HhhhHHHHHHHhh
Confidence 998 99999999999998 677888999888887 4466665554443
No 89
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.76 E-value=5.1e-17 Score=148.96 Aligned_cols=226 Identities=18% Similarity=0.208 Sum_probs=167.5
Q ss_pred hCCeEEecchhhHHHHHHhc----cC-----------CcCceEEeeccccCCCCCCCccch---HHHHHhhcCCCCCceE
Q 022615 33 AADLTLVPSVAIGKDLEAAR----VT-----------AANKIRIWKKGVDSESFHPRFRSS---EMRWRLSNGEPDKPLI 94 (294)
Q Consensus 33 ~ad~ii~~s~~~~~~~~~~~----~~-----------~~~~i~~i~~gvd~~~~~~~~~~~---~~~~~~~~~~~~~~~i 94 (294)
.||.|-+.+....+.|.+.- +. ..-++.++|.|||++.|....... ...........++.+|
T Consensus 287 ~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~g~kiI 366 (934)
T PLN03064 287 AADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFAGRKVM 366 (934)
T ss_pred cCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhCCceEE
Confidence 78999999988887776521 11 012366789999998886432221 1111111123467799
Q ss_pred EEeecccccccHHHHHHHHHhC----CCcE--EEEE-------cCCccHHHHHhhh----cCCC----------eEE-Ee
Q 022615 95 VHVGRLGVEKSLDFLKRVMDRL----PEAR--IAFI-------GDGPYREELEKMF----TGMP----------AVF-TG 146 (294)
Q Consensus 95 ~~~G~~~~~k~~~~l~~~~~~~----~~~~--l~i~-------G~~~~~~~~~~~~----~~~~----------v~~-~g 146 (294)
+.++++++.||+...++|++.+ |+.+ ++++ +.++..+.++..+ ...| |.+ ..
T Consensus 367 lgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~ 446 (934)
T PLN03064 367 LGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDR 446 (934)
T ss_pred EEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEecc
Confidence 9999999999999999988764 5532 4444 3334444433332 2222 443 34
Q ss_pred cccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCC----CEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHH
Q 022615 147 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 222 (294)
Q Consensus 147 ~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~----pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i 222 (294)
.++.+++..+|+.||+++.++..||++++..|||+|+. ++|.|...|..+.+ +..+++++|.|.++++++|
T Consensus 447 ~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L-----~~~AllVNP~D~~~vA~AI 521 (934)
T PLN03064 447 SLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL-----GAGAILVNPWNITEVAASI 521 (934)
T ss_pred CCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh-----CCceEEECCCCHHHHHHHH
Confidence 47889999999999999999999999999999999954 55558888888777 5568999999999999999
Q ss_pred HHHhh-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 022615 223 EPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 263 (294)
Q Consensus 223 ~~ll~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~ 263 (294)
.+++. +++++++..+..++.+..+++...++.+++.+.+..
T Consensus 522 ~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 522 AQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 99998 888889999999999999999999999997776654
No 90
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.75 E-value=1.7e-17 Score=141.72 Aligned_cols=216 Identities=20% Similarity=0.191 Sum_probs=147.9
Q ss_pred HHHH-HHhCCeEEecchhhHHHHHHhccCCcCceEEeeccc-cCCCCCCC-ccchHHHHHhhcCCCCCceEEEee-cc-c
Q 022615 27 IKFL-HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPR-FRSSEMRWRLSNGEPDKPLIVHVG-RL-G 101 (294)
Q Consensus 27 ~~~~-~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-d~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~G-~~-~ 101 (294)
.+++ .+.+|.++++|+..++.+.+. |.+++++.+++|++ |....... ......+... . .+..++++.| +. .
T Consensus 134 ~r~~~~~~ad~~~~~s~~~~~~l~~~-G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~--~-~~~~~vl~~~hr~~~ 209 (365)
T TIGR00236 134 NRQLTGHIADLHFAPTEQAKDNLLRE-NVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEF--G-EDKRYILLTLHRREN 209 (365)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHc-CCCcccEEEeCChHHHHHHHHHhhccchhHHHhc--C-CCCCEEEEecCchhh
Confidence 3443 346899999999999999886 57788999999996 43221111 1111222222 2 2334555555 33 2
Q ss_pred ccccHHHHHHHHHhC----CCcEEEEEcCC-c-cHHHHHhhhc-CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcch
Q 022615 102 VEKSLDFLKRVMDRL----PEARIAFIGDG-P-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGL 174 (294)
Q Consensus 102 ~~k~~~~l~~~~~~~----~~~~l~i~G~~-~-~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~ 174 (294)
..|+++.++++++.+ +++++++.|.+ . ....+.+... ..+|.+.+.++..++..+++.||+++.+| |.
T Consensus 210 ~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~ 284 (365)
T TIGR00236 210 VGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GG 284 (365)
T ss_pred hhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hh
Confidence 348899999998765 57888887543 2 2222333322 24799999999999999999999999877 55
Q ss_pred HHHHHHhcCCCEEee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHH
Q 022615 175 VVLEAMSSGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATR 253 (294)
Q Consensus 175 ~~~Ea~a~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~ 253 (294)
.++|||+||+|||++ +.++..+.+ ..+ .++++ +.|++++++++.+++++++.+++++.+...+.+..+++++++
T Consensus 285 ~~~EA~a~g~PvI~~~~~~~~~e~~---~~g-~~~lv-~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~ 359 (365)
T TIGR00236 285 VQEEAPSLGKPVLVLRDTTERPETV---EAG-TNKLV-GTDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVE 359 (365)
T ss_pred HHHHHHHcCCCEEECCCCCCChHHH---hcC-ceEEe-CCCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHH
Confidence 689999999999996 667777777 545 44455 369999999999999998888887765533223345555555
Q ss_pred HHH
Q 022615 254 TIR 256 (294)
Q Consensus 254 ~~~ 256 (294)
.+.
T Consensus 360 ~l~ 362 (365)
T TIGR00236 360 ELL 362 (365)
T ss_pred HHH
Confidence 444
No 91
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.73 E-value=5.7e-17 Score=138.48 Aligned_cols=199 Identities=17% Similarity=0.182 Sum_probs=140.6
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccc-cCCCCCCCccchHHHHHhhcCCCCCceEEEeecccc--
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV-- 102 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~-- 102 (294)
....+.+.+|.++++|+..++.+.+. |.+++++.+++|++ |...+.+.........+.....++..++++.|+...
T Consensus 134 ~r~~~~~~ad~~~~~s~~~~~~l~~~-G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~ 212 (363)
T cd03786 134 NRHAIDKLSDLHFAPTEEARRNLLQE-GEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVD 212 (363)
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHc-CCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccC
Confidence 33446788999999999999999875 57788999999985 433222111111111111222344556778888764
Q ss_pred -cccHHHHHHHHHhCC--CcEEEEEcCCccHHHHHhhhc-----CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcch
Q 022615 103 -EKSLDFLKRVMDRLP--EARIAFIGDGPYREELEKMFT-----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGL 174 (294)
Q Consensus 103 -~k~~~~l~~~~~~~~--~~~l~i~G~~~~~~~~~~~~~-----~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~ 174 (294)
.|+++.++++++.+. ++.+++.|.+...+.+++... ..++.+.|....+++..+|+.||+++.+|. .
T Consensus 213 ~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg-----g 287 (363)
T cd03786 213 DGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG-----G 287 (363)
T ss_pred ChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc-----c
Confidence 789999999998874 366766677666666666543 347899998888999999999999999983 3
Q ss_pred HHHHHHhcCCCEEeecC-CCcccccccCCCCcceeecCCC-CHHHHHHHHHHHhhChHHHHHHH
Q 022615 175 VVLEAMSSGIPVVGVRA-GGIPDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYNQELRETMG 236 (294)
Q Consensus 175 ~~~Ea~a~G~pvI~~~~-~~~~e~~~~~~~~~~g~~~~~~-d~~~l~~~i~~ll~~~~~~~~~~ 236 (294)
...||+++|+|+|+++. +...+.+ + +|..+... |.++++++|.++++++..+..|.
T Consensus 288 i~~Ea~~~g~PvI~~~~~~~~~~~~---~---~g~~~~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 288 IQEEASFLGVPVLNLRDRTERPETV---E---SGTNVLVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred HHhhhhhcCCCEEeeCCCCccchhh---h---eeeEEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 57899999999999864 3344554 2 33333332 69999999999999887665553
No 92
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.69 E-value=2.1e-15 Score=129.67 Aligned_cols=200 Identities=17% Similarity=0.145 Sum_probs=134.8
Q ss_pred HHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCce-EEEeecc-ccc-c
Q 022615 28 KFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPL-IVHVGRL-GVE-K 104 (294)
Q Consensus 28 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~G~~-~~~-k 104 (294)
+.+.+.+|.+++.|+..++.+.+.+ . ++.+++|++....... ......+.+... .++.++ +++.|.- ... +
T Consensus 129 ~~~~~~~d~i~~~~~~~~~~~~~~g-~---~~~~~G~p~~~~~~~~-~~~~~~~~~l~~-~~~~~~il~~~gsr~~~~~~ 202 (380)
T PRK00025 129 FKIAKATDHVLALFPFEAAFYDKLG-V---PVTFVGHPLADAIPLL-PDRAAARARLGL-DPDARVLALLPGSRGQEIKR 202 (380)
T ss_pred HHHHHHHhhheeCCccCHHHHHhcC-C---CeEEECcCHHHhcccc-cChHHHHHHcCC-CCCCCEEEEECCCCHHHHHH
Confidence 4468899999999999999987643 3 3666666654332211 122233333332 334454 4455533 222 3
Q ss_pred cHHHHHHHHHhC----CCcEEEEEcC-CccHHHHHhhhcCC---CeEEEecccchhHHHHHhcCCEEEeecCCCCcchHH
Q 022615 105 SLDFLKRVMDRL----PEARIAFIGD-GPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVV 176 (294)
Q Consensus 105 ~~~~l~~~~~~~----~~~~l~i~G~-~~~~~~~~~~~~~~---~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~ 176 (294)
..+.++++++.+ ++++++++|. +...+.+++..... ++.+ ..+++..+|+.||+++++| |...
T Consensus 203 ~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~aDl~v~~s-----G~~~ 273 (380)
T PRK00025 203 LLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTL----LDGQKREAMAAADAALAAS-----GTVT 273 (380)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEE----EcccHHHHHHhCCEEEECc-----cHHH
Confidence 467777776544 6788988876 55566676666543 3333 2368999999999999987 7888
Q ss_pred HHHHhcCCCEEee-----------------cCCCcccccccCCCC--cceeecCCCCHHHHHHHHHHHhhChHHHHHHHH
Q 022615 177 LEAMSSGIPVVGV-----------------RAGGIPDIIPEDQDG--KIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQ 237 (294)
Q Consensus 177 ~Ea~a~G~pvI~~-----------------~~~~~~e~~~~~~~~--~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~ 237 (294)
+|+|++|+|+|+. +.++..+++ .++ ..++..+..|++++++++.++++|++.+++|++
T Consensus 274 lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 350 (380)
T PRK00025 274 LELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLL---AGRELVPELLQEEATPEKLARALLPLLADGARRQALLE 350 (380)
T ss_pred HHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHh---cCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8999999999977 233344555 333 345666777899999999999999999999999
Q ss_pred HHHHHHHh
Q 022615 238 AARQEMEK 245 (294)
Q Consensus 238 ~~~~~~~~ 245 (294)
++.+..+.
T Consensus 351 ~~~~~~~~ 358 (380)
T PRK00025 351 GFTELHQQ 358 (380)
T ss_pred HHHHHHHH
Confidence 88666544
No 93
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.69 E-value=1.7e-15 Score=120.40 Aligned_cols=169 Identities=34% Similarity=0.427 Sum_probs=116.9
Q ss_pred HhCCeEEecchhhHHHHH--HhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHHHH
Q 022615 32 RAADLTLVPSVAIGKDLE--AARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFL 109 (294)
Q Consensus 32 ~~ad~ii~~s~~~~~~~~--~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l 109 (294)
.+.|.|++.+........ ... ....++.+..+............ ...... .......|+|++.+.||++.+
T Consensus 50 ~~~D~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~--~~~~~~----~~~~~~~~~g~~~~~k~~~~~ 122 (229)
T cd01635 50 FKPDVVHAHGYYPAPLALLLAAR-LLGIPLVLTVHGVNRSLLEGVPL--SLLALS----IGLADKVFVGRLAPEKGLDDL 122 (229)
T ss_pred cCCCEEEEcCCCcHHHHHHHHHh-hCCCCEEEEEcCccHhhcccCcH--HHHHHH----HhhcceEEEEeecccCCHHHH
Confidence 589999999988777542 111 11123333333322221111111 111100 011223399999999999999
Q ss_pred HHHHHhC----CCcEEEEEcCCccHHHHHh----hhcCCCeEEEecccc-hhHHHHHhcCCEEEeecCCCCcchHHHHHH
Q 022615 110 KRVMDRL----PEARIAFIGDGPYREELEK----MFTGMPAVFTGMLLG-EELSQAYASGDVFVMPSESETLGLVVLEAM 180 (294)
Q Consensus 110 ~~~~~~~----~~~~l~i~G~~~~~~~~~~----~~~~~~v~~~g~~~~-~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~ 180 (294)
++++..+ ++++++++|.+........ .....+|.+.|+++. +++..+++.||++++|+..|++|++++|||
T Consensus 123 ~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam 202 (229)
T cd01635 123 IEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAM 202 (229)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHH
Confidence 9999876 4799999998876655443 223447999999844 556666666999999999999999999999
Q ss_pred hcCCCEEeecCCCcccccccCCCCcceeec
Q 022615 181 SSGIPVVGVRAGGIPDIIPEDQDGKIGYLF 210 (294)
Q Consensus 181 a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~ 210 (294)
++|+|+|+++.++..+++ .++.+|+++
T Consensus 203 ~~g~pvi~s~~~~~~e~i---~~~~~g~~~ 229 (229)
T cd01635 203 ACGLPVIATDVGGPPEIV---EDGLTGLLV 229 (229)
T ss_pred hCCCCEEEcCCCCcceEE---ECCCceEEC
Confidence 999999999999999988 677888764
No 94
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.65 E-value=2e-14 Score=123.53 Aligned_cols=193 Identities=11% Similarity=0.160 Sum_probs=144.4
Q ss_pred HhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHHHHHH
Q 022615 32 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 111 (294)
Q Consensus 32 ~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 111 (294)
.+.|.||+.++...+.+.++++ +..++.++|-|+-.+ .. .. ......++.++. ...++.+.+
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~-~~~~~~~ip~g~i~~---~~-~~----------~r~~~~~l~~t~---s~~I~~i~~ 299 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLD-NEYQEQISQLGYLYP---FK-KD----------NKYRKQALILTN---SDQIEHLEE 299 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhC-cccCceEEEEEEEEe---ec-cc----------cCCcccEEEECC---HHHHHHHHH
Confidence 7899999999998888888775 346788888887622 11 10 112334666662 555666777
Q ss_pred HHHhCCCcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 112 VMDRLPEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 112 ~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+.+.+|+++|.| |.+.+ ...+.++.+..|++..+.+...++.++|..||+++..+..|++++.+.||++.|+||++.+
T Consensus 300 Lv~~lPd~~f~I-ga~te~s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd 378 (438)
T TIGR02919 300 IVQALPDYHFHI-AALTEMSSKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFE 378 (438)
T ss_pred HHHhCCCcEEEE-EecCcccHHHHHHHhcCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEe
Confidence 778889999999 76655 5667666445677766666666899999999999999999999999999999999999998
Q ss_pred CC-CcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHH
Q 022615 191 AG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWR 249 (294)
Q Consensus 191 ~~-~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~ 249 (294)
.. +..+++ .+ |.+++.+++++++++|.+++.+++.+++.-..-++.+..-+.+
T Consensus 379 ~t~~~~~~i---~~---g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~~~~~~ 432 (438)
T TIGR02919 379 ETAHNRDFI---AS---ENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQREHANDISKE 432 (438)
T ss_pred cccCCcccc---cC---CceecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCHH
Confidence 76 334555 22 7899999999999999999999987666554444444334433
No 95
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.62 E-value=9.8e-14 Score=123.55 Aligned_cols=232 Identities=17% Similarity=0.146 Sum_probs=174.2
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccC-------CcCceEEeeccccCCCCCCCccchH------------------
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVT-------AANKIRIWKKGVDSESFHPRFRSSE------------------ 79 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~-------~~~~i~~i~~gvd~~~~~~~~~~~~------------------ 79 (294)
.+.+..+..+|.|.++|+-..+.....++. ...++.-|.||||...+.+.....-
T Consensus 254 nm~~lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~ 333 (601)
T TIGR02094 254 NMTVLALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLYERYLGENWRELLADEEL 333 (601)
T ss_pred eHHHHHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCHHHHHHHHHhCCcchhccchhhhh
Confidence 678888899999999999888755443321 1235888999999998866321100
Q ss_pred -----------H-------HHHhhc--------------------------CCCCCceEEEeecccccccHHHHHHHHHh
Q 022615 80 -----------M-------RWRLSN--------------------------GEPDKPLIVHVGRLGVEKSLDFLKRVMDR 115 (294)
Q Consensus 80 -----------~-------~~~~~~--------------------------~~~~~~~i~~~G~~~~~k~~~~l~~~~~~ 115 (294)
. +.++.. ..++.+.+++++|+..+|+.++++..+.+
T Consensus 334 ~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~v~Rl~~yKr~dLil~~i~~ 413 (601)
T TIGR02094 334 WEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFARRFATYKRADLIFRDLER 413 (601)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEEEEEcchhhhhHHHHHHHHHH
Confidence 0 001100 34567799999999999999998887765
Q ss_pred C--------CCcEEEEEcCCc--------cHHHHHhhhcC--C--CeEEEecccchhHHHHHhcCCEEEe-ecC-CCCcc
Q 022615 116 L--------PEARIAFIGDGP--------YREELEKMFTG--M--PAVFTGMLLGEELSQAYASGDVFVM-PSE-SETLG 173 (294)
Q Consensus 116 ~--------~~~~l~i~G~~~--------~~~~~~~~~~~--~--~v~~~g~~~~~~~~~~~~~ad~~l~-ps~-~e~~~ 173 (294)
+ .++++++.|.+. ..+.+.++.++ . +|.++...+..--..+++.||++++ |+. .|.+|
T Consensus 414 l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacG 493 (601)
T TIGR02094 414 LARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASG 493 (601)
T ss_pred HHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCch
Confidence 5 368999999764 33445555544 2 5777766666667789999999999 999 99999
Q ss_pred hHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCC------------CCHHHHHHHHHHHh-----hC-----hHH
Q 022615 174 LVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP------------GDLDDCLSKLEPLL-----YN-----QEL 231 (294)
Q Consensus 174 ~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~------------~d~~~l~~~i~~ll-----~~-----~~~ 231 (294)
++-+-||..|.+.+++-.|...|.. ++.+|+.+.. .|.+++.++|.+.+ ++ |..
T Consensus 494 tsqMka~~nGgL~~sv~DG~~~E~~----~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~ 569 (601)
T TIGR02094 494 TSGMKAAMNGVLNLSILDGWWGEGY----DGDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPAD 569 (601)
T ss_pred HHHHHHHHcCCceeecccCcccccC----CCCcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHH
Confidence 9999999999999999888877776 4679999984 78999999997654 22 445
Q ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Q 022615 232 RETMGQAARQEM-EKYDWRAATRTIRNEQY 260 (294)
Q Consensus 232 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~ 260 (294)
+.++.+++.... ..|||++.+++|.+..|
T Consensus 570 W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 570 WVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 788888887765 57999999999996544
No 96
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.60 E-value=6.7e-15 Score=99.85 Aligned_cols=90 Identities=29% Similarity=0.488 Sum_probs=83.7
Q ss_pred EEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 022615 162 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ 241 (294)
Q Consensus 162 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~ 241 (294)
+++.|+..++++.+++|+||||+|+|+++.+++.+++ .++..++.++ |++++.+++..+++|++.++++++++++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~---~~~~~~~~~~--~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIF---EDGEHIITYN--DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHc---CCCCeEEEEC--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4677888899999999999999999999999999999 7788888888 9999999999999999999999999999
Q ss_pred HHH-hCCHHHHHHHHH
Q 022615 242 EME-KYDWRAATRTIR 256 (294)
Q Consensus 242 ~~~-~~s~~~~~~~~~ 256 (294)
.+. +|+|+..+++++
T Consensus 76 ~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 995 699999999986
No 97
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.52 E-value=1.7e-12 Score=112.31 Aligned_cols=240 Identities=16% Similarity=0.201 Sum_probs=145.7
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccch----HHHHH--------h----hcC
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS----EMRWR--------L----SNG 87 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~----~~~~~--------~----~~~ 87 (294)
..+|+.....||.+.++|+-++...+...+..++ .|+|||++.+.+.....-. ..+.+ + .+.
T Consensus 212 ~~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~pD--vV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd 289 (633)
T PF05693_consen 212 HSIERAAAHYADVFTTVSEITAKEAEHLLKRKPD--VVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFD 289 (633)
T ss_dssp HHHHHHHHHHSSEEEESSHHHHHHHHHHHSS--S--EE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-
T ss_pred HHHHHHHHHhcCeeeehhhhHHHHHHHHhCCCCC--EEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 3589999999999999999999999887654332 6779999988776643211 11111 1 111
Q ss_pred CCCCceEEEeeccc-ccccHHHHHHHHHhCC--------C---cEEEEEcC-----------------------------
Q 022615 88 EPDKPLIVHVGRLG-VEKSLDFLKRVMDRLP--------E---ARIAFIGD----------------------------- 126 (294)
Q Consensus 88 ~~~~~~i~~~G~~~-~~k~~~~l~~~~~~~~--------~---~~l~i~G~----------------------------- 126 (294)
.++..+|...||.. ..||++.+++++.++. + +.|+|+-.
T Consensus 290 ~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~ 369 (633)
T PF05693_consen 290 LDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEK 369 (633)
T ss_dssp GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHH
Confidence 24556788888884 5899999999997661 2 33444321
Q ss_pred -----------C--ccH---------HHHHhh----------------------------hcCC--------C--eEEEe
Q 022615 127 -----------G--PYR---------EELEKM----------------------------FTGM--------P--AVFTG 146 (294)
Q Consensus 127 -----------~--~~~---------~~~~~~----------------------------~~~~--------~--v~~~g 146 (294)
| ++. -.++.. +++. + |+|++
T Consensus 370 ~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P 449 (633)
T PF05693_consen 370 IGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHP 449 (633)
T ss_dssp HHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--
T ss_pred HHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEee
Confidence 0 000 000000 0000 1 44443
Q ss_pred c-cc------chhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCC--CCcceeecC---CCC
Q 022615 147 M-LL------GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ--DGKIGYLFN---PGD 214 (294)
Q Consensus 147 ~-~~------~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~--~~~~g~~~~---~~d 214 (294)
. ++ .-+..+++..||+.|+||++|.+|.+.+|+.++|+|.|+|+..|+..++++.. ....|+.+- ..+
T Consensus 450 ~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n 529 (633)
T PF05693_consen 450 EYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKN 529 (633)
T ss_dssp S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-
T ss_pred ccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCC
Confidence 2 22 24788999999999999999999999999999999999999998887774321 123444432 234
Q ss_pred HHH----HHHHHHHHhh-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Q 022615 215 LDD----CLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWF 266 (294)
Q Consensus 215 ~~~----l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~ 266 (294)
.++ +++.|..+.. ++..+..++.++.+..+..+|+.+...|. ..|+.++.+
T Consensus 530 ~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~-~Ay~~AL~~ 585 (633)
T PF05693_consen 530 YDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYE-KAYDLALRR 585 (633)
T ss_dssp HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHh
Confidence 444 4444444444 56677778888888888999999999998 788887765
No 98
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.47 E-value=3.3e-11 Score=109.66 Aligned_cols=242 Identities=17% Similarity=0.122 Sum_probs=177.3
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhcc-------CCcCceEEeeccccCCCCC-CCc---------------------
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARV-------TAANKIRIWKKGVDSESFH-PRF--------------------- 75 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~-------~~~~~i~~i~~gvd~~~~~-~~~--------------------- 75 (294)
.+.+..+..|+.+-++|+-..+..++.+. ....++.-|.|||+...+. |..
T Consensus 343 nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~~~~i~~ITNGVh~~~W~~P~~~~l~~~~~g~~w~~~~~~~~~ 422 (778)
T cd04299 343 NMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPVEEVPIGHVTNGVHVPTWVAPEMRELYDRYLGGDWRERPTDPEL 422 (778)
T ss_pred eHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcccCceeceeCCcchhhhcCHHHHHHHHHhcCcchhhccchHHH
Confidence 67888899999999999877554544331 1134689999999998776 210
Q ss_pred -------cch-------HHHHHh--------------------------hcCCCCCceEEEeecccccccHHHHHHHHHh
Q 022615 76 -------RSS-------EMRWRL--------------------------SNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 115 (294)
Q Consensus 76 -------~~~-------~~~~~~--------------------------~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~ 115 (294)
... ..+.++ ....++.++++++.|+..+|+.++++..+.+
T Consensus 423 ~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~ltigfarRfa~YKR~~Lil~dl~r 502 (778)
T cd04299 423 WEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGFARRFATYKRATLLLRDPER 502 (778)
T ss_pred HhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCccEEeeeecchhhhhHHHHHHHHHH
Confidence 010 000000 0123456689999999999999998887655
Q ss_pred C--------CCcEEEEEcCCc--c------HHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEeecC--CCCcc
Q 022615 116 L--------PEARIAFIGDGP--Y------REELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLG 173 (294)
Q Consensus 116 ~--------~~~~l~i~G~~~--~------~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~ 173 (294)
+ ..++|+|.|.+. + .+.+.+..+. .+|.|+...+-.--..+++.||+.++|+. .|.+|
T Consensus 503 l~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsG 582 (778)
T cd04299 503 LKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASG 582 (778)
T ss_pred HHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCc
Confidence 5 358999999753 1 1233333432 25777777666667789999999999999 99999
Q ss_pred hHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCC------------CCHHHHHHHHHHHhh----C------hHH
Q 022615 174 LVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP------------GDLDDCLSKLEPLLY----N------QEL 231 (294)
Q Consensus 174 ~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~------------~d~~~l~~~i~~ll~----~------~~~ 231 (294)
++-+-||..|.+-+++-.|...|.. ++.+||.+.. .|.++|.+.|++-+. + |..
T Consensus 583 TSgMKA~~NG~LnlSvlDGww~E~~----~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~ 658 (778)
T cd04299 583 TSGMKAALNGGLNLSVLDGWWDEGY----DGENGWAIGDGDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPG 658 (778)
T ss_pred cchHHHHHcCCeeeecccCcccccc----CCCCceEeCCCccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 9999999999999999998888886 5889999987 466667777754322 3 667
Q ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHh
Q 022615 232 RETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFWRKK 270 (294)
Q Consensus 232 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~~~~~~~~~~~ 270 (294)
+.+|.+++...+ ..|+|++++++|.+.+|.-+....+..
T Consensus 659 W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p~~~~~~~~ 698 (778)
T cd04299 659 WVAMMKHSMATLGPRFSAERMVREYVERFYLPAARRGRRL 698 (778)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHhHHHHHHHHHHh
Confidence 888888888776 679999999999999997776554444
No 99
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.45 E-value=5.1e-12 Score=108.49 Aligned_cols=222 Identities=16% Similarity=0.125 Sum_probs=158.6
Q ss_pred hCCeEEecchhhHHHHHHhc----cC------------CcCceEEeeccccCCCCCCCccc--hHHHHHhhcCCCCCceE
Q 022615 33 AADLTLVPSVAIGKDLEAAR----VT------------AANKIRIWKKGVDSESFHPRFRS--SEMRWRLSNGEPDKPLI 94 (294)
Q Consensus 33 ~ad~ii~~s~~~~~~~~~~~----~~------------~~~~i~~i~~gvd~~~~~~~~~~--~~~~~~~~~~~~~~~~i 94 (294)
.+|.|-+.+....+.|.+.- +. ..-++.+.|-|||++.|...... ............++.+|
T Consensus 179 ~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~~~~li 258 (474)
T PRK10117 179 DYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAELKNVQNI 258 (474)
T ss_pred hCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHcCCCeEE
Confidence 78999998888877776521 10 11236778999998876442211 11111122123457789
Q ss_pred EEeecccccccHHHHHHHHHhC----C----CcEEEEEcCC-----cc----HHHHHhhhcCC----------CeEE-Ee
Q 022615 95 VHVGRLGVEKSLDFLKRVMDRL----P----EARIAFIGDG-----PY----REELEKMFTGM----------PAVF-TG 146 (294)
Q Consensus 95 ~~~G~~~~~k~~~~l~~~~~~~----~----~~~l~i~G~~-----~~----~~~~~~~~~~~----------~v~~-~g 146 (294)
+-+.+++.-||+..=++|++.+ | ++.|+-+... +. ..+++++..+. .|.+ ..
T Consensus 259 lgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~ 338 (474)
T PRK10117 259 FSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQ 338 (474)
T ss_pred EEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecC
Confidence 9999999999998888888665 4 4566655432 12 22333332221 1443 45
Q ss_pred cccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCC-----CEEeecCCCcccccccCCCCcceeecCCCCHHHHHHH
Q 022615 147 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI-----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 221 (294)
Q Consensus 147 ~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~-----pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~ 221 (294)
.++.+++..+|+.||+++..+..+|+.++..|+++|.. ++|.|...|..+.+ . ..++++|.|.++++++
T Consensus 339 ~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L---~---~AllVNP~d~~~~A~A 412 (474)
T PRK10117 339 HFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL---T---SALIVNPYDRDEVAAA 412 (474)
T ss_pred CCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccchHHHh---C---CCeEECCCCHHHHHHH
Confidence 67889999999999999999999999999999999975 37889888888877 2 4789999999999999
Q ss_pred HHHHhh-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 022615 222 LEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQY 260 (294)
Q Consensus 222 i~~ll~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~ 260 (294)
|.+.+. .++++++.-+..++.+.+++....++.+++.+-
T Consensus 413 i~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~ 452 (474)
T PRK10117 413 LDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLK 452 (474)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Confidence 999998 455677777777788888999999998886554
No 100
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.40 E-value=2.4e-11 Score=104.19 Aligned_cols=205 Identities=16% Similarity=0.076 Sum_probs=126.7
Q ss_pred HHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEE-ee-cccc-c
Q 022615 27 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVH-VG-RLGV-E 103 (294)
Q Consensus 27 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~G-~~~~-~ 103 (294)
.+.+.+.+|.+++.++...+.+.+.+ . ++.+++|++..............+.+... .++.++|+. .| +..+ .
T Consensus 132 ~r~l~~~~d~v~~~~~~e~~~~~~~g-~---~~~~vGnPv~~~~~~~~~~~~~~r~~lgl-~~~~~~Ilvl~GSR~aei~ 206 (385)
T TIGR00215 132 AKKIEKATDFLLAILPFEKAFYQKKN-V---PCRFVGHPLLDAIPLYKPDRKSAREKLGI-DHNGETLALLPGSRGSEVE 206 (385)
T ss_pred HHHHHHHHhHhhccCCCcHHHHHhcC-C---CEEEECCchhhhccccCCCHHHHHHHcCC-CCCCCEEEEECCCCHHHHH
Confidence 67888899999999999999987532 2 56678888743322111122233333333 344555554 44 3344 5
Q ss_pred ccHHHHHHHHHhC----CCcEEEEE-cCCccHHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEeecCCCCcch
Q 022615 104 KSLDFLKRVMDRL----PEARIAFI-GDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGL 174 (294)
Q Consensus 104 k~~~~l~~~~~~~----~~~~l~i~-G~~~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~ 174 (294)
++...++++++.+ |++++++. +.+...+.+++.... ..+.+.+ .++..+|+.||++|++| |.
T Consensus 207 k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~l~aADl~V~~S-----Gt 277 (385)
T TIGR00215 207 KLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLID----GDARKAMFAADAALLAS-----GT 277 (385)
T ss_pred HhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEEC----chHHHHHHhCCEEeecC-----CH
Confidence 7788888777654 57777665 444444444444332 2344332 35778999999999999 77
Q ss_pred HHHHHHhcCCCEEee-cCCCcc----------------cccccCCCCcceeecCCCCHHHHHHHHHHHhhCh----HHHH
Q 022615 175 VVLEAMSSGIPVVGV-RAGGIP----------------DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ----ELRE 233 (294)
Q Consensus 175 ~~~Ea~a~G~pvI~~-~~~~~~----------------e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~----~~~~ 233 (294)
..+|++++|+|+|.. ....+. .++.. +....-++-...+++.+++.+.+++.|+ +.++
T Consensus 278 ~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~-~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~ 356 (385)
T TIGR00215 278 AALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILAN-RLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMH 356 (385)
T ss_pred HHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcC-CccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHH
Confidence 778999999998876 222222 11200 0001111223457899999999999998 8777
Q ss_pred HHHHHHHHHHHhC
Q 022615 234 TMGQAARQEMEKY 246 (294)
Q Consensus 234 ~~~~~~~~~~~~~ 246 (294)
++.+...+..+..
T Consensus 357 ~~~~~~~~~~~~l 369 (385)
T TIGR00215 357 RERQFFEELRQRI 369 (385)
T ss_pred HHHHHHHHHHHHh
Confidence 7776665554443
No 101
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.36 E-value=1.1e-11 Score=107.64 Aligned_cols=222 Identities=21% Similarity=0.274 Sum_probs=135.4
Q ss_pred hCCeEEecchhhHHHHHHh----ccC--C-----------cCceEEeeccccCCCCCCCccc---hHHHHHhhcCCCC-C
Q 022615 33 AADLTLVPSVAIGKDLEAA----RVT--A-----------ANKIRIWKKGVDSESFHPRFRS---SEMRWRLSNGEPD-K 91 (294)
Q Consensus 33 ~ad~ii~~s~~~~~~~~~~----~~~--~-----------~~~i~~i~~gvd~~~~~~~~~~---~~~~~~~~~~~~~-~ 91 (294)
.||.|-+.+....+.|... .+. . .-++.+.|-|||++.+...... ............+ .
T Consensus 197 ~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~~~~ 276 (474)
T PF00982_consen 197 GADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFKGKR 276 (474)
T ss_dssp TSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTTT-S
T ss_pred cCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcCCCc
Confidence 7999999998888777543 211 1 1136778889998776432111 1111111112234 5
Q ss_pred ceEEEeecccccccHHHHHHHHHhC----C----CcEEEEEcCC-----c----cHHHHHhhhcCC----------CeE-
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRL----P----EARIAFIGDG-----P----YREELEKMFTGM----------PAV- 143 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~----~----~~~l~i~G~~-----~----~~~~~~~~~~~~----------~v~- 143 (294)
.+|+-+.+++..||+..=+.|++++ | ++.|+-++.. + ..+++.++..+. .|.
T Consensus 277 ~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~ 356 (474)
T PF00982_consen 277 KIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIY 356 (474)
T ss_dssp EEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEE
T ss_pred EEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEE
Confidence 8899999999999998888888655 4 4666655521 1 122333332211 244
Q ss_pred EEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCC----EEeecCCCcccccccCCCCcceeecCCCCHHHHH
Q 022615 144 FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCL 219 (294)
Q Consensus 144 ~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~p----vI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~ 219 (294)
+.+.++.+++..+|+.||+++.++..+|+.+...|+++|... +|.|...|..+.+ ....+.++|.|.++++
T Consensus 357 ~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L-----~~~al~VNP~d~~~~A 431 (474)
T PF00982_consen 357 IYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQL-----SEAALLVNPWDIEEVA 431 (474)
T ss_dssp E-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT------TTS-EEE-TT-HHHHH
T ss_pred EecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHc-----CCccEEECCCChHHHH
Confidence 445688999999999999999999999999999999999765 7888888888777 3345899999999999
Q ss_pred HHHHHHhh-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 022615 220 SKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQ 259 (294)
Q Consensus 220 ~~i~~ll~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l 259 (294)
++|.+.+. .+++++..-+..++.+.+++....++.+++.+
T Consensus 432 ~ai~~AL~M~~~Er~~r~~~~~~~v~~~~~~~W~~~~l~~L 472 (474)
T PF00982_consen 432 DAIHEALTMPPEERKERHARLREYVREHDVQWWAESFLRDL 472 (474)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhHhCCHHHHHHHHHHHh
Confidence 99999998 55677777777888888999999998888655
No 102
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.5e-10 Score=99.22 Aligned_cols=224 Identities=18% Similarity=0.212 Sum_probs=160.6
Q ss_pred HhCCeEEecchhhHHHHHHhcc-----------------CCcCceEEeeccccCCCCCCCccchH----HHHHhhcCCCC
Q 022615 32 RAADLTLVPSVAIGKDLEAARV-----------------TAANKIRIWKKGVDSESFHPRFRSSE----MRWRLSNGEPD 90 (294)
Q Consensus 32 ~~ad~ii~~s~~~~~~~~~~~~-----------------~~~~~i~~i~~gvd~~~~~~~~~~~~----~~~~~~~~~~~ 90 (294)
-.+|.|-+.++..++.|...-. ....++..+|-|+|+..+........ .+.-......+
T Consensus 202 l~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~~ 281 (486)
T COG0380 202 LGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGRN 281 (486)
T ss_pred hcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcCC
Confidence 3789999999888877755321 11135678899999987754332211 11111112334
Q ss_pred CceEEEeecccccccHHHHHHHHHhC----C----CcEEEEEcCCc---------cHHHHHhhhcCC----------CeE
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRL----P----EARIAFIGDGP---------YREELEKMFTGM----------PAV 143 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~----~----~~~l~i~G~~~---------~~~~~~~~~~~~----------~v~ 143 (294)
+.+|+.+.|++.-||+..=+.+++++ | ++.++-++..+ ....++....+. .|.
T Consensus 282 ~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~ 361 (486)
T COG0380 282 KKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVH 361 (486)
T ss_pred ceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeE
Confidence 78899999999999988877777665 3 45665555321 112222222211 244
Q ss_pred -EEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcC----CCEEeecCCCcccccccCCCCcceeecCCCCHHHH
Q 022615 144 -FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG----IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 218 (294)
Q Consensus 144 -~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G----~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l 218 (294)
+...++.+++..+|+.||+++..+..+|+.++..|+.+|- -+.|.|...|....+ . ..++++|.|.+++
T Consensus 362 ~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L---~---~AliVNP~d~~~v 435 (486)
T COG0380 362 YLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASEL---R---DALIVNPWDTKEV 435 (486)
T ss_pred EEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhh---c---cCEeECCCChHHH
Confidence 4455888999999999999999999999999999999985 478888888877777 2 2789999999999
Q ss_pred HHHHHHHhh-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 022615 219 LSKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 219 ~~~i~~ll~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~ 261 (294)
+++|.+.++ .++++++.-+..++.+.+++....++.+++.+.+
T Consensus 436 a~ai~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 436 ADAIKRALTMSLEERKERHEKLLKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999998 5667777777777888889999999988876665
No 103
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.26 E-value=2.4e-10 Score=105.94 Aligned_cols=225 Identities=15% Similarity=0.157 Sum_probs=158.6
Q ss_pred HhCCeEEecchhhHHHHHHh----ccC---------------CcCceEEeeccccCCCCCCCccchH---HHHHh--hcC
Q 022615 32 RAADLTLVPSVAIGKDLEAA----RVT---------------AANKIRIWKKGVDSESFHPRFRSSE---MRWRL--SNG 87 (294)
Q Consensus 32 ~~ad~ii~~s~~~~~~~~~~----~~~---------------~~~~i~~i~~gvd~~~~~~~~~~~~---~~~~~--~~~ 87 (294)
-.||.|-+.+...++.|.+. .+. ..-++.+.|-|||+..+.......+ ..... ...
T Consensus 256 L~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~ 335 (854)
T PLN02205 256 LNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFC 335 (854)
T ss_pred hcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhc
Confidence 37999999998888777661 111 1123667899999887744322111 11111 111
Q ss_pred CCCCceEEEeecccccccHHHHHHHHHhC----CC----cEEEEEcC-----CccHHHHH----hhhcCC----------
Q 022615 88 EPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PE----ARIAFIGD-----GPYREELE----KMFTGM---------- 140 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~k~~~~l~~~~~~~----~~----~~l~i~G~-----~~~~~~~~----~~~~~~---------- 140 (294)
.+++.+|+-+.+++.-||+..=+.|++++ |+ +.|+-+.. +...+.++ +...+.
T Consensus 336 ~~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~ 415 (854)
T PLN02205 336 DQDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYD 415 (854)
T ss_pred cCCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 23577899999999999998888888665 43 45554442 22222222 222211
Q ss_pred CeEEE-ecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCC-------------------CEEeecCCCccccccc
Q 022615 141 PAVFT-GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI-------------------PVVGVRAGGIPDIIPE 200 (294)
Q Consensus 141 ~v~~~-g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~-------------------pvI~~~~~~~~e~~~~ 200 (294)
.|.+. ..++.+++..+|+.||+++..+..+|+.++..||++|.. .+|.|...|....+
T Consensus 416 Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L-- 493 (854)
T PLN02205 416 PIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSL-- 493 (854)
T ss_pred eEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHh--
Confidence 25544 668889999999999999999999999999999999864 36777777766666
Q ss_pred CCCCcceeecCCCCHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 022615 201 DQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 262 (294)
Q Consensus 201 ~~~~~~g~~~~~~d~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~ 262 (294)
...+.++|.|.++++++|.+.+.- +++++..-+..++.+.+++....++.+++.+.+.
T Consensus 494 ----~~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~ 552 (854)
T PLN02205 494 ----SGAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERT 552 (854)
T ss_pred ----CcCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 237899999999999999999984 4566666667778888899999999998776554
No 104
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=2e-09 Score=89.71 Aligned_cols=213 Identities=18% Similarity=0.203 Sum_probs=141.8
Q ss_pred ccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeecc-ccCCCCCCCccchHHHHHhhcCCCC-CceEEEee
Q 022615 21 KPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG-VDSESFHPRFRSSEMRWRLSNGEPD-KPLIVHVG 98 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g-vd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~G 98 (294)
+..+.+.+.+++..|.|++.|+..++.+.+.+. + ++.+..|- +|.+ +................. +.+++..+
T Consensus 165 ~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa-~--~v~v~GNlKfd~~---~~~~~~~~~~~~r~~l~~~r~v~iaaS 238 (419)
T COG1519 165 AKLKFLARLLFKNIDLILAQSEEDAQRFRSLGA-K--PVVVTGNLKFDIE---PPPQLAAELAALRRQLGGHRPVWVAAS 238 (419)
T ss_pred HHHHHHHHHHHHhcceeeecCHHHHHHHHhcCC-c--ceEEecceeecCC---CChhhHHHHHHHHHhcCCCCceEEEec
Confidence 345578999999999999999999999999763 2 36666652 2221 111111111111111122 67777777
Q ss_pred cccccccHHHHHHHH----HhCCCcEEEEEcCCccH-HHHHhhhcCCC-----------------eEEEecccchhHHHH
Q 022615 99 RLGVEKSLDFLKRVM----DRLPEARIAFIGDGPYR-EELEKMFTGMP-----------------AVFTGMLLGEELSQA 156 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~----~~~~~~~l~i~G~~~~~-~~~~~~~~~~~-----------------v~~~g~~~~~~~~~~ 156 (294)
....+ -+.+++++ +..|+..++++-..+++ +.++++++..+ |.+.+.+ .||..+
T Consensus 239 TH~GE--eei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm--GEL~l~ 314 (419)
T COG1519 239 THEGE--EEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM--GELGLL 314 (419)
T ss_pred CCCch--HHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH--hHHHHH
Confidence 63222 33345555 45578999999887765 45555555432 4444444 789999
Q ss_pred HhcCCEEEee-cCCCCcchHHHHHHhcCCCEEeecC-CCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHH
Q 022615 157 YASGDVFVMP-SESETLGLVVLEAMSSGIPVVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRET 234 (294)
Q Consensus 157 ~~~ad~~l~p-s~~e~~~~~~~Ea~a~G~pvI~~~~-~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~ 234 (294)
|+.||+.+.. |...-.|..++|+.++|+|||..+. -...++.+.-...+.++.++ |.+.+.+.+..+++|++.+++
T Consensus 315 y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~--~~~~l~~~v~~l~~~~~~r~~ 392 (419)
T COG1519 315 YGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE--DADLLAKAVELLLADEDKREA 392 (419)
T ss_pred HhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC--CHHHHHHHHHHhcCCHHHHHH
Confidence 9999988775 5556778899999999999998643 23333332224555666666 677888888888888999999
Q ss_pred HHHHHHHHHHh
Q 022615 235 MGQAARQEMEK 245 (294)
Q Consensus 235 ~~~~~~~~~~~ 245 (294)
+++++...+.+
T Consensus 393 ~~~~~~~~v~~ 403 (419)
T COG1519 393 YGRAGLEFLAQ 403 (419)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 105
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=2.1e-09 Score=90.29 Aligned_cols=211 Identities=16% Similarity=0.183 Sum_probs=140.5
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeec-cccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR-LGVE 103 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~-~~~~ 103 (294)
...+++.+.++.|.+.-+. . ..+ .+++++.+..+++..+... ... ...+. .... ++++|+.+|. .+-.
T Consensus 128 ~ank~~~~~a~~V~~~f~~----~-~~~-~~~~~~~~tG~Pvr~~~~~-~~~-~~~~~--~~~~-~~~~ilV~GGS~Ga~ 196 (357)
T COG0707 128 LANKILSKFAKKVASAFPK----L-EAG-VKPENVVVTGIPVRPEFEE-LPA-AEVRK--DGRL-DKKTILVTGGSQGAK 196 (357)
T ss_pred hhHHHhHHhhceeeecccc----c-ccc-CCCCceEEecCcccHHhhc-cch-hhhhh--hccC-CCcEEEEECCcchhH
Confidence 4677788888888876655 1 112 3456788999988877664 111 11111 1111 5555555554 4544
Q ss_pred ccHHHHHHHHHhCCC-cEEE-EEcCCccHHHHHhhhcCCC-eEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHH
Q 022615 104 KSLDFLKRVMDRLPE-ARIA-FIGDGPYREELEKMFTGMP-AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 180 (294)
Q Consensus 104 k~~~~l~~~~~~~~~-~~l~-i~G~~~~~~~~~~~~~~~~-v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~ 180 (294)
.--+.+.++...+.+ ++++ .+|.+. .+.+.......+ +.+.++. ++|..+|+.||++|+-+ .++++.|..
T Consensus 197 ~ln~~v~~~~~~l~~~~~v~~~~G~~~-~~~~~~~~~~~~~~~v~~f~--~dm~~~~~~ADLvIsRa----Ga~Ti~E~~ 269 (357)
T COG0707 197 ALNDLVPEALAKLANRIQVIHQTGKND-LEELKSAYNELGVVRVLPFI--DDMAALLAAADLVISRA----GALTIAELL 269 (357)
T ss_pred HHHHHHHHHHHHhhhCeEEEEEcCcch-HHHHHHHHhhcCcEEEeeHH--hhHHHHHHhccEEEeCC----cccHHHHHH
Confidence 444555566666664 6654 445554 555555555555 7888888 89999999999999765 368999999
Q ss_pred hcCCCEEeecCCCc--------ccccccCCCCcceeecCCCC--HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHH
Q 022615 181 SSGIPVVGVRAGGI--------PDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRA 250 (294)
Q Consensus 181 a~G~pvI~~~~~~~--------~e~~~~~~~~~~g~~~~~~d--~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~ 250 (294)
++|+|+|.-+.+.. ..++ .+.+.+.+++..+ ++.+.+.|.+++++++..++|.++++.....-.-+.
T Consensus 270 a~g~P~IliP~p~~~~~~Q~~NA~~l---~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~ 346 (357)
T COG0707 270 ALGVPAILVPYPPGADGHQEYNAKFL---EKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGKPDAAER 346 (357)
T ss_pred HhCCCEEEeCCCCCccchHHHHHHHH---HhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999987655433 2233 4455666666554 889999999999999999999999988765554555
Q ss_pred HHHHHH
Q 022615 251 ATRTIR 256 (294)
Q Consensus 251 ~~~~~~ 256 (294)
+++.+.
T Consensus 347 i~~~~~ 352 (357)
T COG0707 347 IADLLL 352 (357)
T ss_pred HHHHHH
Confidence 544443
No 106
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.12 E-value=8.3e-09 Score=88.73 Aligned_cols=208 Identities=13% Similarity=0.069 Sum_probs=133.2
Q ss_pred HHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccc--cc
Q 022615 27 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EK 104 (294)
Q Consensus 27 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k 104 (294)
.+...+.|+.+++..+...+.+.+.+ .++.++.|.+-....... . . ....+...+++..|.-+. .+
T Consensus 154 n~l~~~~a~~v~~~~~~t~~~l~~~g----~k~~~vGnPv~d~l~~~~-~-~------~l~~~~~~lllLpGSR~ae~~~ 221 (396)
T TIGR03492 154 WLMRSRRCLAVFVRDRLTARDLRRQG----VRASYLGNPMMDGLEPPE-R-K------PLLTGRFRIALLPGSRPPEAYR 221 (396)
T ss_pred HHhhchhhCEEeCCCHHHHHHHHHCC----CeEEEeCcCHHhcCcccc-c-c------ccCCCCCEEEEECCCCHHHHHc
Confidence 45666899999999999999998743 278889988744432211 1 0 111223344555665423 34
Q ss_pred cHHHHHHHHHhC---CCcEEEEEc-CCccHHHHHhhhcCCC------------------eEEEecccchhHHHHHhcCCE
Q 022615 105 SLDFLKRVMDRL---PEARIAFIG-DGPYREELEKMFTGMP------------------AVFTGMLLGEELSQAYASGDV 162 (294)
Q Consensus 105 ~~~~l~~~~~~~---~~~~l~i~G-~~~~~~~~~~~~~~~~------------------v~~~g~~~~~~~~~~~~~ad~ 162 (294)
++..++++++.+ +++.+++.- .+...+.+++.....+ +.+..+. +++.++|+.||+
T Consensus 222 ~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~ADl 299 (396)
T TIGR03492 222 NLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGR--GAFAEILHWADL 299 (396)
T ss_pred cHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEech--HhHHHHHHhCCE
Confidence 566888888777 567776543 3444555555443222 4445554 789999999999
Q ss_pred EEeecCCCCcchHHHHHHhcCCCEEeecCCCc---ccccccCCC----CcceeecCCCCHHHHHHHHHHHhhChHHHHHH
Q 022615 163 FVMPSESETLGLVVLEAMSSGIPVVGVRAGGI---PDIIPEDQD----GKIGYLFNPGDLDDCLSKLEPLLYNQELRETM 235 (294)
Q Consensus 163 ~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~---~e~~~~~~~----~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~ 235 (294)
+|..| |....|++++|+|+|....++. ..++ +. ...+..+...+++.+++.+..+++|++.++++
T Consensus 300 vI~rS-----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~---~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~ 371 (396)
T TIGR03492 300 GIAMA-----GTATEQAVGLGKPVIQLPGKGPQFTYGFA---EAQSRLLGGSVFLASKNPEQAAQVVRQLLADPELLERC 371 (396)
T ss_pred EEECc-----CHHHHHHHHhCCCEEEEeCCCCHHHHHHH---HhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 99886 5677999999999998764322 1222 11 02344445567899999999999999888787
Q ss_pred HHHHHHHH-HhCCHHHHHHHHH
Q 022615 236 GQAARQEM-EKYDWRAATRTIR 256 (294)
Q Consensus 236 ~~~~~~~~-~~~s~~~~~~~~~ 256 (294)
.+++.+.. +....+.+++.+.
T Consensus 372 ~~~~~~~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 372 RRNGQERMGPPGASARIAESIL 393 (396)
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 75444443 3345555554443
No 107
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.93 E-value=2.3e-08 Score=82.10 Aligned_cols=208 Identities=16% Similarity=0.150 Sum_probs=150.0
Q ss_pred hCCeEEecchhh-HHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHHHHHH
Q 022615 33 AADLTLVPSVAI-GKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 111 (294)
Q Consensus 33 ~ad~ii~~s~~~-~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 111 (294)
-.|.|++.++.. ++.+.+.++ ..++..++.++|.+.+.+.+... ...--+.++|+..++ ..+.+-+
T Consensus 138 ~fd~v~~~g~~l~~~~yyq~~~--~~~~~~~~~a~d~~~~~~i~~da----------~~~~dL~~ign~~pD-r~e~~ke 204 (373)
T COG4641 138 IFDNVLSFGGGLVANKYYQEGG--ARNCYYLPWAVDDSLFHPIPPDA----------SYDVDLNLIGNPYPD-RVEEIKE 204 (373)
T ss_pred hhhhhhhccchHHHHHHHHhhc--ccceeccCccCCchhcccCCccc----------cceeeeEEecCCCcc-HHHHHHH
Confidence 345566666666 555554443 34789999999999998864321 123358899988776 3344444
Q ss_pred HHHh----CC-CcEEEEEcCCccHHHHHhhhcCCCeEEEecccc-hhHHHHHhcCCEEEeecCC---C-C--cchHHHHH
Q 022615 112 VMDR----LP-EARIAFIGDGPYREELEKMFTGMPAVFTGMLLG-EELSQAYASGDVFVMPSES---E-T--LGLVVLEA 179 (294)
Q Consensus 112 ~~~~----~~-~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~-~~~~~~~~~ad~~l~ps~~---e-~--~~~~~~Ea 179 (294)
++.. +. +-.+...|.. +...+.......++.+.|+++. +.+...++..|+.+.-++. + + +.+.++|+
T Consensus 205 ~~~~ps~kl~v~rr~~~~g~~-y~~~~~~~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFei 283 (373)
T COG4641 205 FFVEPSFKLMVDRRFYVLGPR-YPDDIWGRTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEI 283 (373)
T ss_pred HhhccchhhhccceeeecCCc-cchhhhcccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHH
Confidence 4421 11 2455566654 2223333333447888888877 8999999999999886542 2 2 37889999
Q ss_pred HhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Q 022615 180 MSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNE 258 (294)
Q Consensus 180 ~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ 258 (294)
++||.|.|++...++..++ .+|+.-++.. |..++.+++..++..+++++++++.+++.+ ..|+.+.-+.++++.
T Consensus 284 agc~~~liT~~~~~~e~~f---~pgk~~iv~~--d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~ 358 (373)
T COG4641 284 AGCGGFLITDYWKDLEKFF---KPGKDIIVYQ--DSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNE 358 (373)
T ss_pred hhcCCccccccHHHHHHhc---CCchheEEec--CHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999898899 7787777766 999999999999999999999999999998 459999888888843
Q ss_pred H
Q 022615 259 Q 259 (294)
Q Consensus 259 l 259 (294)
+
T Consensus 359 i 359 (373)
T COG4641 359 I 359 (373)
T ss_pred H
Confidence 3
No 108
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.86 E-value=1.8e-07 Score=79.74 Aligned_cols=212 Identities=13% Similarity=0.108 Sum_probs=126.4
Q ss_pred HHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeecc-ccCCCCCCCccchHHHHHhhcCCCCCceEEEeec-----c
Q 022615 27 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG-VDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR-----L 100 (294)
Q Consensus 27 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g-vd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~-----~ 100 (294)
.+.+-+.++..+++++..++.+.+.+ .+++++.++.|. +|.-.............+.+...+++.+++.+-+ .
T Consensus 138 r~~i~~la~l~f~~t~~~~~~L~~eg-~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~ 216 (365)
T TIGR03568 138 RHAITKLSHLHFVATEEYRQRVIQMG-EDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKE 216 (365)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHcC-CCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCccccc
Confidence 34445667899999999999998855 556788888774 4432221111222333333322223443333322 2
Q ss_pred cccccHHHHHHHHHhCC-CcEEEEEc-CCc----cHHHHHhhhc-CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcc
Q 022615 101 GVEKSLDFLKRVMDRLP-EARIAFIG-DGP----YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 173 (294)
Q Consensus 101 ~~~k~~~~l~~~~~~~~-~~~l~i~G-~~~----~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~ 173 (294)
.....+..+++++..+. ++ +++.- .++ ..+.+.++.. ..++.+.+.++..++..+++.|++++.-| +
T Consensus 217 ~~~~~l~~li~~L~~~~~~~-~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdS-----S 290 (365)
T TIGR03568 217 SAEEQIKELLKALDELNKNY-IFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNS-----S 290 (365)
T ss_pred CchHHHHHHHHHHHHhccCC-EEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcC-----h
Confidence 22334666777776653 34 22321 112 1334455443 45799999999999999999999999544 2
Q ss_pred hHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHH
Q 022615 174 LVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATR 253 (294)
Q Consensus 174 ~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~ 253 (294)
..+.||.++|+|+|+- +.-++.+ +.+.+++.+ ..|.+++.+++.++ .+++.+..+. .....|..-+.++
T Consensus 291 ggi~EA~~lg~Pvv~l--~~R~e~~---~~g~nvl~v-g~~~~~I~~a~~~~-~~~~~~~~~~----~~~~pygdg~as~ 359 (365)
T TIGR03568 291 SGIIEAPSFGVPTINI--GTRQKGR---LRADSVIDV-DPDKEEIVKAIEKL-LDPAFKKSLK----NVKNPYGDGNSSE 359 (365)
T ss_pred hHHHhhhhcCCCEEee--cCCchhh---hhcCeEEEe-CCCHHHHHHHHHHH-hChHHHHHHh----hCCCCCCCChHHH
Confidence 3448999999999954 4566666 567777756 45889999999995 4443222221 1112355555555
Q ss_pred HHH
Q 022615 254 TIR 256 (294)
Q Consensus 254 ~~~ 256 (294)
++.
T Consensus 360 rI~ 362 (365)
T TIGR03568 360 RII 362 (365)
T ss_pred HHH
Confidence 554
No 109
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.80 E-value=6.1e-07 Score=76.13 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=111.5
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
...+.+.+.++.+++.-+...+.+ +.+++.+..+++........ ....+..... .+++++++.+|.-...+
T Consensus 128 ~~nr~~~~~a~~v~~~f~~~~~~~------~~~k~~~tG~Pvr~~~~~~~--~~~~~~~~~l-~~~~~~iLv~GGS~Ga~ 198 (352)
T PRK12446 128 LANKIALRFASKIFVTFEEAAKHL------PKEKVIYTGSPVREEVLKGN--REKGLAFLGF-SRKKPVITIMGGSLGAK 198 (352)
T ss_pred HHHHHHHHhhCEEEEEccchhhhC------CCCCeEEECCcCCccccccc--chHHHHhcCC-CCCCcEEEEECCccchH
Confidence 456788889999987654433222 34678888888876654321 2222222322 33455555555443344
Q ss_pred cH-HHHHHHHHhC-CCcEEE-EEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHh
Q 022615 105 SL-DFLKRVMDRL-PEARIA-FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 181 (294)
Q Consensus 105 ~~-~~l~~~~~~~-~~~~l~-i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a 181 (294)
.+ +.+.+++..+ .+++++ ++|.....+.... . .++...+++ .+++.++|+.||++|.-+ .++++.|+++
T Consensus 199 ~in~~~~~~l~~l~~~~~vv~~~G~~~~~~~~~~-~--~~~~~~~f~-~~~m~~~~~~adlvIsr~----G~~t~~E~~~ 270 (352)
T PRK12446 199 KINETVREALPELLLKYQIVHLCGKGNLDDSLQN-K--EGYRQFEYV-HGELPDILAITDFVISRA----GSNAIFEFLT 270 (352)
T ss_pred HHHHHHHHHHHhhccCcEEEEEeCCchHHHHHhh-c--CCcEEecch-hhhHHHHHHhCCEEEECC----ChhHHHHHHH
Confidence 44 4455556555 356654 4565432222222 1 244445654 257999999999998653 3788999999
Q ss_pred cCCCEEeecCCC----cccccccC--CCCcceeecC--CCCHHHHHHHHHHHhhChHHH
Q 022615 182 SGIPVVGVRAGG----IPDIIPED--QDGKIGYLFN--PGDLDDCLSKLEPLLYNQELR 232 (294)
Q Consensus 182 ~G~pvI~~~~~~----~~e~~~~~--~~~~~g~~~~--~~d~~~l~~~i~~ll~~~~~~ 232 (294)
+|+|.|..+... ..+..+.. .+.+.+..+. .-+++.+.+.+..++.|++.+
T Consensus 271 ~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~ 329 (352)
T PRK12446 271 LQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKY 329 (352)
T ss_pred cCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHH
Confidence 999999875431 11221100 2334444443 235789999999999887654
No 110
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.78 E-value=3.2e-07 Score=78.67 Aligned_cols=222 Identities=13% Similarity=0.103 Sum_probs=110.1
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccc-hHHHHHhhcCCCCCceEEEeecccccc
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS-SEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
.........|.+++.|+...+.+.+.++.+.+++.+.+.+-....+...... ....... ....++.+|+|+-+++...
T Consensus 127 ~~~~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~-~~~~~~k~ILyaPT~R~~~ 205 (369)
T PF04464_consen 127 NYKRNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKL-GIDKDKKVILYAPTWRDNS 205 (369)
T ss_dssp HHHHHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHT-T--SS-EEEEEE----GGG
T ss_pred hhhhhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHh-ccCCCCcEEEEeecccccc
Confidence 4455778899999999999999999988877777665443222222222221 1222222 2344566899997764433
Q ss_pred cH------------HHHHHHHHhCCCcEEEEEcCCccHHHHHh-hhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCC
Q 022615 105 SL------------DFLKRVMDRLPEARIAFIGDGPYREELEK-MFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESET 171 (294)
Q Consensus 105 ~~------------~~l~~~~~~~~~~~l~i~G~~~~~~~~~~-~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~ 171 (294)
.. +.+. ...-+++.+++-........... .....++.....- +++.+++..||++|.-.
T Consensus 206 ~~~~~~~~~~~~~~~~l~--~~~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~--~~~~~ll~~aDiLITDy---- 277 (369)
T PF04464_consen 206 SNEYFKFFFSDLDFEKLN--FLLKNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDN--EDIYDLLAAADILITDY---- 277 (369)
T ss_dssp --GGSS----TT-HHHHH--HHHTTTEEEEE--SHHHHTT----TT-TTTEEE-TT---S-HHHHHHT-SEEEESS----
T ss_pred ccccccccccccCHHHHH--HHhCCCcEEEEEeCchhhhchhhhhccCCcEEECCCC--CCHHHHHHhcCEEEEec----
Confidence 32 2222 22235777777664322222222 1123355554433 68999999999998543
Q ss_pred cchHHHHHHhcCCCEEee--cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhC
Q 022615 172 LGLVVLEAMSSGIPVVGV--RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKY 246 (294)
Q Consensus 172 ~~~~~~Ea~a~G~pvI~~--~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 246 (294)
+..++|++.+|+|||.. |.... +.+..+..+...|..+. +.+++.++|..++.++....+..+...+..-.|
T Consensus 278 -SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~--~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 354 (369)
T PF04464_consen 278 -SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY--NFEELIEAIENIIENPDEYKEKREKFRDKFFKY 354 (369)
T ss_dssp --THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES--SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT
T ss_pred -hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC--CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCC
Confidence 67899999999999954 33211 11111112233444554 899999999998876655443333333333223
Q ss_pred CHHHHHHHHHHHH
Q 022615 247 DWRAATRTIRNEQ 259 (294)
Q Consensus 247 s~~~~~~~~~~~l 259 (294)
.-.+.++++.+.|
T Consensus 355 ~Dg~s~eri~~~I 367 (369)
T PF04464_consen 355 NDGNSSERIVNYI 367 (369)
T ss_dssp --S-HHHHHHHHH
T ss_pred CCchHHHHHHHHH
Confidence 3345555555444
No 111
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.75 E-value=6e-07 Score=77.37 Aligned_cols=172 Identities=16% Similarity=0.228 Sum_probs=106.2
Q ss_pred CCCCceEEEeeccccc--ccHHHHHHHHHhCCCcEEEEEcCCc-cHHHHHhhhcCC-----CeEEEecccchhHHHHHhc
Q 022615 88 EPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAFIGDGP-YREELEKMFTGM-----PAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~--k~~~~l~~~~~~~~~~~l~i~G~~~-~~~~~~~~~~~~-----~v~~~g~~~~~~~~~~~~~ 159 (294)
+++.++++.+.++.+. .-++...++++..|+.+|++...+. ..+.+.+..... ++.|.+..+.++....++.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~ 361 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQL 361 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhh
Confidence 4455566666665332 2355667777888999998875433 234444444332 4889999888899999999
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccC---CCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHH
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED---QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 236 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~---~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~ 236 (294)
+|++|-+. .-+.+++.+||+.+|+|||+-....+..-+... .-|-..++.. |.++..+....+..|++.+++++
T Consensus 362 ~DI~LDT~-p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~--s~~eYv~~Av~La~D~~~l~~lR 438 (468)
T PF13844_consen 362 ADICLDTF-PYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD--SEEEYVEIAVRLATDPERLRALR 438 (468)
T ss_dssp -SEEE--S-SS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S--SHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCEEeeCC-CCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC--CHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999763 345578899999999999987644332222000 0122334444 88999999999999999999999
Q ss_pred HHHHHHH-H--hCCHHHHHHHHHHHHHHHH
Q 022615 237 QAARQEM-E--KYDWRAATRTIRNEQYNAA 263 (294)
Q Consensus 237 ~~~~~~~-~--~~s~~~~~~~~~~~l~~~~ 263 (294)
++.++.. . -|+-...++.+. ..|+++
T Consensus 439 ~~Lr~~~~~SpLfd~~~~ar~lE-~a~~~m 467 (468)
T PF13844_consen 439 AKLRDRRSKSPLFDPKRFARNLE-AAYRQM 467 (468)
T ss_dssp HHHHHHHHHSGGG-HHHHHHHHH-HHHHHH
T ss_pred HHHHHHHhhCCCCCHHHHHHHHH-HHHHHh
Confidence 9888765 2 289999999998 777764
No 112
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.71 E-value=3.7e-07 Score=74.89 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=73.0
Q ss_pred CceEEEeecccccccHHHHHHHHHhC-CCcEE-EEEcCC-ccHHHHHhhhcC-CCeEEEecccchhHHHHHhcCCEEEee
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRL-PEARI-AFIGDG-PYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMP 166 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~-~~~~l-~i~G~~-~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l~p 166 (294)
..+++.+|..++.+....+++++... +++++ +++|.+ +..+.+++.... .++.+.+++ +++.++|..||++|..
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~--~~m~~lm~~aDl~Is~ 248 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDV--ENMAELMNEADLAIGA 248 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCH--HHHHHHHHHCCEEEEC
Confidence 45788999888877677888888766 34554 356765 455666666543 478899988 8999999999999985
Q ss_pred cCCCCcchHHHHHHhcCCCEEeecCC
Q 022615 167 SESETLGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 167 s~~e~~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
. |.+++|++++|+|+|+....
T Consensus 249 ~-----G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 249 A-----GSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred C-----chHHHHHHHcCCCEEEEEec
Confidence 3 68899999999999986554
No 113
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.70 E-value=7.5e-07 Score=75.22 Aligned_cols=209 Identities=18% Similarity=0.199 Sum_probs=126.3
Q ss_pred eeccccCCCcccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCC
Q 022615 9 VYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGE 88 (294)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~ 88 (294)
+|++..-|.|..+. .+.+-+.+|.+++.=....+.+.+.+ . ++..+.|+.-.. ..+.......+... ...
T Consensus 113 yYI~PqvWAWr~~R----~~~i~~~~D~ll~ifPFE~~~y~~~g-~---~~~~VGHPl~d~-~~~~~~~~~~~~~~-l~~ 182 (373)
T PF02684_consen 113 YYISPQVWAWRPGR----AKKIKKYVDHLLVIFPFEPEFYKKHG-V---PVTYVGHPLLDE-VKPEPDRAEAREKL-LDP 182 (373)
T ss_pred EEECCceeeeCccH----HHHHHHHHhheeECCcccHHHHhccC-C---CeEEECCcchhh-hccCCCHHHHHHhc-CCC
Confidence 44555455554443 45566788999999999999999865 3 578888875222 22222222333333 334
Q ss_pred CCCceEEEeeccc-c-cccHHHHHHHHHhC----CCcEEEEEcCCccHHH-HHhhhcCC--CeEEEecccchhHHHHHhc
Q 022615 89 PDKPLIVHVGRLG-V-EKSLDFLKRVMDRL----PEARIAFIGDGPYREE-LEKMFTGM--PAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 89 ~~~~~i~~~G~~~-~-~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~-~~~~~~~~--~v~~~g~~~~~~~~~~~~~ 159 (294)
++..+.+..|+-. . .+.+..++++++.+ |++++++......... +.+..... ++.+. +...+-.++|+.
T Consensus 183 ~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~m~~ 260 (373)
T PF02684_consen 183 DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIV--IIEGESYDAMAA 260 (373)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEE--EcCCchHHHHHh
Confidence 4455667777542 2 34456677776554 7888888765443333 33433322 22222 223678889999
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEe-ecCCCccccccc---------------CCCCcceeecCCCCHHHHHHHHH
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVG-VRAGGIPDIIPE---------------DQDGKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~-~~~~~~~e~~~~---------------~~~~~~g~~~~~~d~~~l~~~i~ 223 (294)
||+.+..| |+..+|++.+|+|.|+ .....+..++.. ++.-..-++-+..+++.+++++.
T Consensus 261 ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~ 335 (373)
T PF02684_consen 261 ADAALAAS-----GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELL 335 (373)
T ss_pred CcchhhcC-----CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHH
Confidence 99999888 9999999999999765 333322222200 00111112334558899999999
Q ss_pred HHhhChHHHHH
Q 022615 224 PLLYNQELRET 234 (294)
Q Consensus 224 ~ll~~~~~~~~ 234 (294)
.++.|++.++.
T Consensus 336 ~ll~~~~~~~~ 346 (373)
T PF02684_consen 336 ELLENPEKRKK 346 (373)
T ss_pred HHhcCHHHHHH
Confidence 99988775433
No 114
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.68 E-value=8.4e-07 Score=76.73 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=96.3
Q ss_pred CCceEEEeecccccc--cHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeec
Q 022615 90 DKPLIVHVGRLGVEK--SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k--~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
+..+++..|+..... -+..+++++...+...++..|.+.....+... ..++.+.+++++. +++..||++|..+
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~--~~~v~~~~~~p~~---~ll~~~~~~I~hg 299 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGEL--PPNVEVRQWVPQL---EILKKADAFITHG 299 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccC--CCCeEEeCCCCHH---HHHhhCCEEEECC
Confidence 345677778753322 34556667766653344456765444333322 3478889998754 6789999998644
Q ss_pred CCCCcchHHHHHHhcCCCEEeecCCCc----ccccccCCCCcceeecCC--CCHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 022615 168 ESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAARQ 241 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~~~~~~----~e~~~~~~~~~~g~~~~~--~d~~~l~~~i~~ll~~~~~~~~~~~~~~~ 241 (294)
...++.|++++|+|+|+.....- ...+ ...+.|..+.. -+.+++.++|.+++.|++.++.+.+-+..
T Consensus 300 ----G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l---~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~ 372 (392)
T TIGR01426 300 ----GMNSTMEALFNGVPMVAVPQGADQPMTARRI---AELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAE 372 (392)
T ss_pred ----CchHHHHHHHhCCCEEecCCcccHHHHHHHH---HHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 24578999999999998654322 2223 33455655543 35789999999999998755554443333
Q ss_pred HHHhCCHHHHHHHHH
Q 022615 242 EMEKYDWRAATRTIR 256 (294)
Q Consensus 242 ~~~~~s~~~~~~~~~ 256 (294)
....-..+..++.+.
T Consensus 373 ~~~~~~~~~aa~~i~ 387 (392)
T TIGR01426 373 IREAGGARRAADEIE 387 (392)
T ss_pred HHHcCCHHHHHHHHH
Confidence 333345555555544
No 115
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=1.4e-06 Score=72.28 Aligned_cols=206 Identities=17% Similarity=0.113 Sum_probs=130.3
Q ss_pred HHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccc--cc
Q 022615 27 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EK 104 (294)
Q Consensus 27 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k 104 (294)
...+.+.+|.+++.=.+..+.+.+.+ . .++.+.|..-... .-.......+.+.+...+.+.+.+..|+-+. .+
T Consensus 130 a~~i~~~~D~lLailPFE~~~y~k~g-~---~~~yVGHpl~d~i-~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~r 204 (381)
T COG0763 130 AVKIAKYVDHLLAILPFEPAFYDKFG-L---PCTYVGHPLADEI-PLLPDREAAREKLGIDADEKTLALLPGSRRSEIRR 204 (381)
T ss_pred HHHHHHHhhHeeeecCCCHHHHHhcC-C---CeEEeCChhhhhc-cccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHH
Confidence 55677889999999999999998864 3 3677777653222 1122334466666666666777888886532 34
Q ss_pred cHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcCCCe-EEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH
Q 022615 105 SLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 105 ~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea 179 (294)
....+.++++.+ |+.++++--.....+.++......+. ...-.+...+-.+.+..||+.+..| |+..+|+
T Consensus 205 l~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aS-----GT~tLE~ 279 (381)
T COG0763 205 LLPPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAAS-----GTATLEA 279 (381)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhc-----cHHHHHH
Confidence 455666666544 78999988766554444444332222 1233344567889999999999887 9999999
Q ss_pred HhcCCCEEee-cCCCcccccccC-------------C--CCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHH
Q 022615 180 MSSGIPVVGV-RAGGIPDIIPED-------------Q--DGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQE 242 (294)
Q Consensus 180 ~a~G~pvI~~-~~~~~~e~~~~~-------------~--~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 242 (294)
+.+|+|.|++ ....+.-++... - .-..-++-....++.+++++..++.|...+.++.+...+.
T Consensus 280 aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l 358 (381)
T COG0763 280 ALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFREL 358 (381)
T ss_pred HHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHH
Confidence 9999998764 333222211000 0 0001111133468899999999998886666666555544
No 116
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.60 E-value=5.1e-07 Score=76.25 Aligned_cols=198 Identities=14% Similarity=0.124 Sum_probs=110.7
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccc-cCCCCCC-CccchHHHHHhhcCCCCCceEEEeecccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHP-RFRSSEMRWRLSNGEPDKPLIVHVGRLGV 102 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-d~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~G~~~~ 102 (294)
.....+-+.||.-+++++..++.+.+.+ .++++|+++.|.. |.-.... ...............+++.+++..=+...
T Consensus 114 ~~R~~i~~la~lhf~~t~~~~~~L~~~G-~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~ 192 (346)
T PF02350_consen 114 INRHAIDKLAHLHFAPTEEARERLLQEG-EPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTN 192 (346)
T ss_dssp HHHHHHHHH-SEEEESSHHHHHHHHHTT---GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCC
T ss_pred hhhhhhhhhhhhhccCCHHHHHHHHhcC-CCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchh
Confidence 4555566789999999999999999965 6778999998743 3221110 00000000111112334444444422221
Q ss_pred ---cccHHHHHHHH---HhCCCcEEEEEcC--CccHHHHHhhhcC-CCeEEEecccchhHHHHHhcCCEEEeecCCCCcc
Q 022615 103 ---EKSLDFLKRVM---DRLPEARIAFIGD--GPYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 173 (294)
Q Consensus 103 ---~k~~~~l~~~~---~~~~~~~l~i~G~--~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~ 173 (294)
......+.+++ ...+++.+++... ......+.+.+.. .++.+...++..++..+++.|+++|.-| |
T Consensus 193 ~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s 267 (346)
T PF02350_consen 193 EDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADLVVGDS-----S 267 (346)
T ss_dssp CTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESEEEESS-----H
T ss_pred cCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceEEEEcC-----c
Confidence 22233444444 3336788887765 3333444444433 2899999999999999999999998655 5
Q ss_pred hHHH-HHHhcCCCEEee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHH
Q 022615 174 LVVL-EAMSSGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRET 234 (294)
Q Consensus 174 ~~~~-Ea~a~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~ 234 (294)
.+. ||.++|+|+|.- +.+.-.+.. ..+.+.+ +. .|.+++.+++.+++.+.+.+.+
T Consensus 268 -GI~eEa~~lg~P~v~iR~~geRqe~r---~~~~nvl-v~-~~~~~I~~ai~~~l~~~~~~~~ 324 (346)
T PF02350_consen 268 -GIQEEAPSLGKPVVNIRDSGERQEGR---ERGSNVL-VG-TDPEAIIQAIEKALSDKDFYRK 324 (346)
T ss_dssp -HHHHHGGGGT--EEECSSS-S-HHHH---HTTSEEE-ET-SSHHHHHHHHHHHHH-HHHHHH
T ss_pred -cHHHHHHHhCCeEEEecCCCCCHHHH---hhcceEE-eC-CCHHHHHHHHHHHHhChHHHHh
Confidence 455 999999999987 445556665 4455555 54 6999999999999987544433
No 117
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.58 E-value=2.8e-06 Score=68.55 Aligned_cols=220 Identities=12% Similarity=0.086 Sum_probs=129.6
Q ss_pred CCCcccccHHHHHHHHHHhCCeEEecchhhHHHH-HHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCce
Q 022615 15 TFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDL-EAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPL 93 (294)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~-~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (294)
..+|..+.+..+.|...++...|++ ...-..++ ++.++++ .+....|.-.++........ ..++...
T Consensus 80 ~~~lk~rlfy~lRR~aq~rvg~v~a-trGD~~~~a~~~~~v~-~~llyfpt~m~~~l~~~~~~----------~~~~~~~ 147 (322)
T PRK02797 80 SKGLKFRLFYPLRRLAQKRVGHVFA-TRGDLSYFAQRHPKVP-GSLLYFPTRMDPSLNTMAND----------RQRAGKM 147 (322)
T ss_pred ccchhHHHHHHHHHHHHhhcCeEEE-ecchHHHHHHhcCCCC-ccEEecCCcchhhhcccccc----------ccCCCce
Confidence 3667777778889999999999999 65666664 4545554 33433333333221111100 1122334
Q ss_pred EEEeecc-cccccHHHHHHHHHhC--CCcEEEEE-cC--C--ccHHHHHhhhcC----CCe-EEEecccchhHHHHHhcC
Q 022615 94 IVHVGRL-GVEKSLDFLKRVMDRL--PEARIAFI-GD--G--PYREELEKMFTG----MPA-VFTGMLLGEELSQAYASG 160 (294)
Q Consensus 94 i~~~G~~-~~~k~~~~l~~~~~~~--~~~~l~i~-G~--~--~~~~~~~~~~~~----~~v-~~~g~~~~~~~~~~~~~a 160 (294)
.+.+|+- ++..++..+++++.+. .++++++- |. | .+.+.+.+..++ .++ .+..+++.+|..++++.|
T Consensus 148 tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~ 227 (322)
T PRK02797 148 TILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQC 227 (322)
T ss_pred EEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhC
Confidence 5556655 5566677778888665 45666553 43 2 234444444442 243 456778889999999999
Q ss_pred CEEEeecC-CCCcchHHHHHHhcCCCEEee-cCCCcccccccCCCCcceeecCCCCH--HHHHHHHHHHhhChHHHHHHH
Q 022615 161 DVFVMPSE-SETLGLVVLEAMSSGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDL--DDCLSKLEPLLYNQELRETMG 236 (294)
Q Consensus 161 d~~l~ps~-~e~~~~~~~Ea~a~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~--~~l~~~i~~ll~~~~~~~~~~ 236 (294)
|++++... ..|+|+.++ .+..|+||+.+ +++...++. +.+-.. +++.++. ..+.+ ..+++.
T Consensus 228 Dl~~f~~~RQQgiGnl~l-Li~~G~~v~l~r~n~fwqdl~---e~gv~V-lf~~d~L~~~~v~e----------~~rql~ 292 (322)
T PRK02797 228 DLGYFIFARQQGIGTLCL-LIQLGKPVVLSRDNPFWQDLT---EQGLPV-LFTGDDLDEDIVRE----------AQRQLA 292 (322)
T ss_pred CEEEEeechhhHHhHHHH-HHHCCCcEEEecCCchHHHHH---hCCCeE-EecCCcccHHHHHH----------HHHHHH
Confidence 99998765 678886654 89999999877 556666655 334333 2333222 12211 122233
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 022615 237 QAARQEMEKYDWRAATRTIRNEQYNAA 263 (294)
Q Consensus 237 ~~~~~~~~~~s~~~~~~~~~~~l~~~~ 263 (294)
...++.+. |+-++..+.|. .++..+
T Consensus 293 ~~dk~~I~-Ff~pn~~~~W~-~~l~~~ 317 (322)
T PRK02797 293 SVDKNIIA-FFSPNYLQGWR-NALAIA 317 (322)
T ss_pred hhCcceee-ecCHhHHHHHH-HHHHHh
Confidence 33333333 88888888887 565544
No 118
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.49 E-value=3.7e-06 Score=72.99 Aligned_cols=138 Identities=16% Similarity=0.097 Sum_probs=89.0
Q ss_pred CCCceEEEeecccc---cccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe
Q 022615 89 PDKPLIVHVGRLGV---EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 89 ~~~~~i~~~G~~~~---~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
.+..+++..|+... .+....+++++...+...++.+|...... .....||.+.+++++ ..++..||++|.
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~----~~~~~~v~~~~~~p~---~~ll~~~d~~I~ 310 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA----EDLPDNVRVVDFVPH---DWLLPRCAAVVH 310 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc----cCCCCceEEeCCCCH---HHHhhhhheeee
Confidence 34567778888743 34456777888776433344556543221 122347999999864 456888999983
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHHHH
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAA 239 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~ 239 (294)
- |..+++.|++++|+|+|+..... ..+.+ ...+.|...... +.+++.+++.++++++ .+++..+.+
T Consensus 311 h----gG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~---~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~~~~~~~~ 382 (401)
T cd03784 311 H----GGAGTTAAALRAGVPQLVVPFFGDQPFWAARV---AELGAGPALDPRELTAERLAAALRRLLDPP-SRRRAAALL 382 (401)
T ss_pred c----CCchhHHHHHHcCCCEEeeCCCCCcHHHHHHH---HHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HHHHHHHHH
Confidence 3 33588999999999999886543 23333 345566666554 6899999999998743 344444333
Q ss_pred HH
Q 022615 240 RQ 241 (294)
Q Consensus 240 ~~ 241 (294)
.+
T Consensus 383 ~~ 384 (401)
T cd03784 383 RR 384 (401)
T ss_pred HH
Confidence 33
No 119
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.45 E-value=2.5e-05 Score=69.36 Aligned_cols=217 Identities=12% Similarity=0.099 Sum_probs=130.6
Q ss_pred eeccccCCCcccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCC
Q 022615 9 VYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGE 88 (294)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~ 88 (294)
+|++..-|.|..+. .+.+-+.+|.+++.=+...+.+++.+ . +++.+.|+.-.. ..........+.+.+...
T Consensus 341 yYVsPqVWAWR~~R----ikki~k~vD~ll~IfPFE~~~y~~~g-v---~v~yVGHPL~d~-i~~~~~~~~~r~~lgl~~ 411 (608)
T PRK01021 341 HYVCPSIWAWRPKR----KTILEKYLDLLLLILPFEQNLFKDSP-L---RTVYLGHPLVET-ISSFSPNLSWKEQLHLPS 411 (608)
T ss_pred EEECccceeeCcch----HHHHHHHhhhheecCccCHHHHHhcC-C---CeEEECCcHHhh-cccCCCHHHHHHHcCCCC
Confidence 34455455555443 35566788999999999999998853 3 578888875222 222223333444444433
Q ss_pred CCCceEEEeeccc--ccccHHHHHHHHH--hC-CCcEEEEEcCCc-cHHHHHhhhcCCC---eEEEecccchhHHHHHhc
Q 022615 89 PDKPLIVHVGRLG--VEKSLDFLKRVMD--RL-PEARIAFIGDGP-YREELEKMFTGMP---AVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 89 ~~~~~i~~~G~~~--~~k~~~~l~~~~~--~~-~~~~l~i~G~~~-~~~~~~~~~~~~~---v~~~g~~~~~~~~~~~~~ 159 (294)
++..+.+..|+-. -.+....++++++ .+ ++.++++....+ ..+.+++.....+ +.+. +.++-.++++.
T Consensus 412 ~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii---~~~~~~~~m~a 488 (608)
T PRK01021 412 DKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIV---PSQFRYELMRE 488 (608)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEe---cCcchHHHHHh
Confidence 4455667777542 2455778888887 65 567776654332 3455666554322 2322 12234799999
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEee-cCCCccc------------------ccccCCCCcceee--cCCCCHHHH
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGGIPD------------------IIPEDQDGKIGYL--FNPGDLDDC 218 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~-~~~~~~e------------------~~~~~~~~~~g~~--~~~~d~~~l 218 (294)
||+.+..| |+..+|++.+|+|.|+. ......- ++.. +.-..-++ -+..+++.+
T Consensus 489 aD~aLaaS-----GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIag-r~VvPEllqgQ~~~tpe~L 562 (608)
T PRK01021 489 CDCALAKC-----GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILG-STIFPEFIGGKKDFQPEEV 562 (608)
T ss_pred cCeeeecC-----CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcC-CCcchhhcCCcccCCHHHH
Confidence 99999888 99999999999998753 3332221 1100 00011122 134578999
Q ss_pred HHHHHHHhhChHHHHHHHHHHHHHHH
Q 022615 219 LSKLEPLLYNQELRETMGQAARQEME 244 (294)
Q Consensus 219 ~~~i~~ll~~~~~~~~~~~~~~~~~~ 244 (294)
++++ +++.|++.++++.+...+..+
T Consensus 563 a~~l-~lL~d~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 563 AAAL-DILKTSQSKEKQKDACRDLYQ 587 (608)
T ss_pred HHHH-HHhcCHHHHHHHHHHHHHHHH
Confidence 9886 777887777666665555443
No 120
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.7e-05 Score=67.59 Aligned_cols=175 Identities=12% Similarity=0.113 Sum_probs=114.0
Q ss_pred CCCCceEEEeeccccc--ccHHHHHHHHHhCCCcEEEEEcCCccH---HHHHhhhcCC-----CeEEEecccchhHHHHH
Q 022615 88 EPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAFIGDGPYR---EELEKMFTGM-----PAVFTGMLLGEELSQAY 157 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~--k~~~~l~~~~~~~~~~~l~i~G~~~~~---~~~~~~~~~~-----~v~~~g~~~~~~~~~~~ 157 (294)
+++.+++++.++..+. .-+....+.++..|+-.|.+.|.|++. ..++++.+.. ++.|.+..++++..+-|
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 3444455555544222 124555677788899999999876543 3555555544 58999999999999999
Q ss_pred hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCccccccc---CCCCcceeecCCCCHHHHHHHHHHHhhChHHHHH
Q 022615 158 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE---DQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRET 234 (294)
Q Consensus 158 ~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~---~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~ 234 (294)
.-||+++-..- -+..++.+|++.+|+||++-....+..-+.. ..-|-.-++.. +.++..+.-..+-.|...+++
T Consensus 507 ~iADlvLDTyP-Y~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~--s~~dYV~~av~~g~dral~q~ 583 (620)
T COG3914 507 GIADLVLDTYP-YGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVAD--SRADYVEKAVAFGSDRALRQQ 583 (620)
T ss_pred chhheeeeccc-CCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcC--CHHHHHHHHHHhcccHHHHHh
Confidence 99999985433 3456778999999999998533211111100 01122223343 667777777777677766666
Q ss_pred HHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHH
Q 022615 235 MGQAARQEME---KYDWRAATRTIRNEQYNAAIWF 266 (294)
Q Consensus 235 ~~~~~~~~~~---~~s~~~~~~~~~~~l~~~~~~~ 266 (294)
.+..-++..+ -|+.+.+++++. .+|..+...
T Consensus 584 ~r~~l~~~r~tspL~d~~~far~le-~~y~~M~~~ 617 (620)
T COG3914 584 VRAELKRSRQTSPLFDPKAFARKLE-TLYWGMWSE 617 (620)
T ss_pred hHHHHHhccccCcccCHHHHHHHHH-HHHHHHHHh
Confidence 6655544442 289999999998 788887654
No 121
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.37 E-value=5.1e-05 Score=62.31 Aligned_cols=172 Identities=9% Similarity=0.049 Sum_probs=110.8
Q ss_pred CCCcccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceE
Q 022615 15 TFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLI 94 (294)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (294)
..+|..+.+..+.+...++...|++ ...-..++++.++..+......|.-++......... ...+...-
T Consensus 119 ~~~~k~rlfy~lRr~aq~rvg~V~a-t~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~~~~----------~~~~~~lt 187 (360)
T PF07429_consen 119 SRSLKFRLFYFLRRLAQKRVGHVFA-TRGDLAYFQQRYPRVPASLLYFPTRMDPALTLSEKN----------KKNKGKLT 187 (360)
T ss_pred ccccchhHHHHHHHHHHhhcCeEEE-EcchHHHHHHHcCCCCceEEEcCCCCchhhhccccc----------cCCCCceE
Confidence 4566667777888999999999876 577778888887644444444454444432222111 11223444
Q ss_pred EEeecc-cccccHHHHHHHHHhC--CCcEEEEE-cCCc----cHHHHHhhhcC----CCeEE-EecccchhHHHHHhcCC
Q 022615 95 VHVGRL-GVEKSLDFLKRVMDRL--PEARIAFI-GDGP----YREELEKMFTG----MPAVF-TGMLLGEELSQAYASGD 161 (294)
Q Consensus 95 ~~~G~~-~~~k~~~~l~~~~~~~--~~~~l~i~-G~~~----~~~~~~~~~~~----~~v~~-~g~~~~~~~~~~~~~ad 161 (294)
+.+|+- ++..++..+++++++. .++++++- |.|. +.+.+.+...+ .++.. ..+++.+|..++++.||
T Consensus 188 ILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cD 267 (360)
T PF07429_consen 188 ILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCD 267 (360)
T ss_pred EEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCC
Confidence 555655 5555577777777654 45666553 4443 34444444443 25654 56899999999999999
Q ss_pred EEEeecC-CCCcchHHHHHHhcCCCEEeecCCCccccc
Q 022615 162 VFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDII 198 (294)
Q Consensus 162 ~~l~ps~-~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~ 198 (294)
++++... ..|.|+.+ -.+.+|+||+.+....+-..+
T Consensus 268 l~if~~~RQQgiGnI~-lLl~~G~~v~L~~~np~~~~l 304 (360)
T PF07429_consen 268 LGIFNHNRQQGIGNIC-LLLQLGKKVFLSRDNPFWQDL 304 (360)
T ss_pred EEEEeechhhhHhHHH-HHHHcCCeEEEecCChHHHHH
Confidence 9999876 67777655 499999999888665444444
No 122
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=4.2e-05 Score=63.82 Aligned_cols=218 Identities=18% Similarity=0.197 Sum_probs=133.3
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCC---CccchHHHHHhhcCCCCCceEEEee-cc-
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHP---RFRSSEMRWRLSNGEPDKPLIVHVG-RL- 100 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~G-~~- 100 (294)
..+..-..+|.-+++++..++.+.+.+ .++++|+++.|.+-...... ........... ....++.+++..+ |-
T Consensus 138 NR~l~~~~S~~hfapte~ar~nLl~EG-~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~-~~~~~~~~iLvT~HRre 215 (383)
T COG0381 138 NRRLTSHLSDLHFAPTEIARKNLLREG-VPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKG-LDDKDKKYILVTAHRRE 215 (383)
T ss_pred HHHHHHHhhhhhcCChHHHHHHHHHcC-CCccceEEeCChHHHHHHHHHhhhccchhhHHhh-hccccCcEEEEEcchhh
Confidence 344555678999999999999999876 56778999998652221111 11111111111 1233333444443 33
Q ss_pred cccccHHHHHHHH----HhCCCcEEEEEcCC-c-cHHHH-HhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcc
Q 022615 101 GVEKSLDFLKRVM----DRLPEARIAFIGDG-P-YREEL-EKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 173 (294)
Q Consensus 101 ~~~k~~~~l~~~~----~~~~~~~l~i~G~~-~-~~~~~-~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~ 173 (294)
...+++..+++++ +..+++.++.--.. + .++.. ..+....++.++..+...++..+++.|-+++.-| |
T Consensus 216 N~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS-----G 290 (383)
T COG0381 216 NVGEPLEEICEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS-----G 290 (383)
T ss_pred cccccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-----C
Confidence 1225666666654 44455555544321 1 12222 2222334799999999999999999998887655 6
Q ss_pred hHHHHHHhcCCCEEeec-CCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHH
Q 022615 174 LVVLEAMSSGIPVVGVR-AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAAT 252 (294)
Q Consensus 174 ~~~~Ea~a~G~pvI~~~-~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~ 252 (294)
...=||-..|+||++-. ...-+|.+ ..|.. .++. .+.+.+.+++..++++++.+++|+....-+-+-.+.++++
T Consensus 291 giqEEAp~lg~Pvl~lR~~TERPE~v---~agt~-~lvg-~~~~~i~~~~~~ll~~~~~~~~m~~~~npYgdg~as~rIv 365 (383)
T COG0381 291 GIQEEAPSLGKPVLVLRDTTERPEGV---EAGTN-ILVG-TDEENILDAATELLEDEEFYERMSNAKNPYGDGNASERIV 365 (383)
T ss_pred chhhhHHhcCCcEEeeccCCCCccce---ecCce-EEeC-ccHHHHHHHHHHHhhChHHHHHHhcccCCCcCcchHHHHH
Confidence 67789999999998864 45666766 33333 3333 3779999999999999998887775443333222334343
Q ss_pred HHH
Q 022615 253 RTI 255 (294)
Q Consensus 253 ~~~ 255 (294)
+-+
T Consensus 366 ~~l 368 (383)
T COG0381 366 EIL 368 (383)
T ss_pred HHH
Confidence 333
No 123
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.25 E-value=5.4e-05 Score=67.36 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=95.2
Q ss_pred CceEEEeeccc-----ccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHH--hcCCEE
Q 022615 91 KPLIVHVGRLG-----VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAY--ASGDVF 163 (294)
Q Consensus 91 ~~~i~~~G~~~-----~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~--~~ad~~ 163 (294)
..+++..|... +.+-...++++++.++. ++++...+.... .....||.+.+++|+.+ ++ ..++++
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~-~viw~~~~~~~~----~~~p~Nv~i~~w~Pq~~---lL~hp~v~~f 368 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPY-NVLWKYDGEVEA----INLPANVLTQKWFPQRA---VLKHKNVKAF 368 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCC-eEEEEECCCcCc----ccCCCceEEecCCCHHH---HhcCCCCCEE
Confidence 46778888763 23456788899998874 666554432211 11235899999998765 55 457777
Q ss_pred EeecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCCcceeecCC--CCHHHHHHHHHHHhhChHHHHHHHH
Q 022615 164 VMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQ 237 (294)
Q Consensus 164 l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~~~--~d~~~l~~~i~~ll~~~~~~~~~~~ 237 (294)
|. -|..+++.||+.+|+|+|+-+.. .....+ ...+.|...+. -+.+++.++|.++++|+..++...+
T Consensus 369 It----HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv---~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ 441 (507)
T PHA03392 369 VT----QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY---VELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKE 441 (507)
T ss_pred Ee----cCCcccHHHHHHcCCCEEECCCCccHHHHHHHH---HHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHH
Confidence 63 34467789999999999986543 233333 34556666654 3678999999999998776555444
Q ss_pred HHHHHHHh-CCHHHHHHHHH
Q 022615 238 AARQEMEK-YDWRAATRTIR 256 (294)
Q Consensus 238 ~~~~~~~~-~s~~~~~~~~~ 256 (294)
-++...++ .+....+-.+.
T Consensus 442 ls~~~~~~p~~~~~~av~~i 461 (507)
T PHA03392 442 LRHLIRHQPMTPLHKAIWYT 461 (507)
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 44443333 33433333333
No 124
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.18 E-value=1.8e-05 Score=66.37 Aligned_cols=121 Identities=15% Similarity=0.147 Sum_probs=82.1
Q ss_pred CCceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCC
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES 169 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~ 169 (294)
...+++++|..+.. .++++++.+++..++++|.... .....|+.+.++. ..++.++|..||++|.-.
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~~~~~~~~v~g~~~~------~~~~~ni~~~~~~-~~~~~~~m~~ad~vIs~~-- 258 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKALPDYQFIVFGPNAA------DPRPGNIHVRPFS-TPDFAELMAAADLVISKG-- 258 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHhCCCCeEEEEcCCcc------cccCCCEEEeecC-hHHHHHHHHhCCEEEECC--
Confidence 45678888877665 6788899999999999986531 1115578876653 478999999999999654
Q ss_pred CCcchHHHHHHhcCCCEEeecCCCccccc---ccCCCCcceeecC--CCCHHHHHHHHHHH
Q 022615 170 ETLGLVVLEAMSSGIPVVGVRAGGIPDII---PEDQDGKIGYLFN--PGDLDDCLSKLEPL 225 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~---~~~~~~~~g~~~~--~~d~~~l~~~i~~l 225 (294)
.-+++.|++++|+|+|+-+..+..|-. ...+..+.|...+ .-+++.+.+.|.++
T Consensus 259 --G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 259 --GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred --CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 234599999999999987765422211 0003344555544 33567777777653
No 125
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.15 E-value=8.1e-05 Score=64.37 Aligned_cols=152 Identities=15% Similarity=0.163 Sum_probs=95.3
Q ss_pred CCceEEEeeccccc-ccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 90 DKPLIVHVGRLGVE-KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 90 ~~~~i~~~G~~~~~-k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
...+.+..|..... .-+..+++++..+ +.++++...+ ...... ....|+...+++++.+ ++..||++|+..
T Consensus 237 ~~~vyvslGt~~~~~~l~~~~~~a~~~l-~~~vi~~~~~-~~~~~~--~~p~n~~v~~~~p~~~---~l~~ad~vI~hG- 308 (406)
T COG1819 237 RPIVYVSLGTVGNAVELLAIVLEALADL-DVRVIVSLGG-ARDTLV--NVPDNVIVADYVPQLE---LLPRADAVIHHG- 308 (406)
T ss_pred CCeEEEEcCCcccHHHHHHHHHHHHhcC-CcEEEEeccc-cccccc--cCCCceEEecCCCHHH---HhhhcCEEEecC-
Confidence 44556666766544 2234455566655 4566666533 111111 1234788888887665 899999999654
Q ss_pred CCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCCcceeecC--CCCHHHHHHHHHHHhhChHHHHHHHHHHHHH
Q 022615 169 SETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFN--PGDLDDCLSKLEPLLYNQELRETMGQAARQE 242 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~~--~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 242 (294)
..+++.|++.+|+|+|+-..+ ...+.+ +.-+.|.... .-+.+.+.++|.++++++..++...+..+..
T Consensus 309 ---G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv---e~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~ 382 (406)
T COG1819 309 ---GAGTTSEALYAGVPLVVIPDGADQPLNAERV---EELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEF 382 (406)
T ss_pred ---CcchHHHHHHcCCCEEEecCCcchhHHHHHH---HHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356789999999999986544 233344 4556776666 5689999999999999887655544433333
Q ss_pred HHhCCHHHHHHHH
Q 022615 243 MEKYDWRAATRTI 255 (294)
Q Consensus 243 ~~~~s~~~~~~~~ 255 (294)
.+.-.....++.+
T Consensus 383 ~~~~g~~~~a~~l 395 (406)
T COG1819 383 KEEDGPAKAADLL 395 (406)
T ss_pred hhcccHHHHHHHH
Confidence 3334433344433
No 126
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=98.14 E-value=4.8e-07 Score=68.43 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=67.9
Q ss_pred cEE-EEEcCCccHHHHHhhhcC-CCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC---
Q 022615 119 ARI-AFIGDGPYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG--- 193 (294)
Q Consensus 119 ~~l-~i~G~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~--- 193 (294)
+++ +++|.....+...+.... .++.+.++. +++.++|+.||++|.-. .++++.|++++|+|.|.-+...
T Consensus 32 ~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~--~~m~~~m~~aDlvIs~a----G~~Ti~E~l~~g~P~I~ip~~~~~~ 105 (167)
T PF04101_consen 32 IQVIVQTGKNNYEELKIKVENFNPNVKVFGFV--DNMAELMAAADLVISHA----GAGTIAEALALGKPAIVIPLPGAAD 105 (167)
T ss_dssp CCCCCCCTTCECHHHCCCHCCTTCCCEEECSS--SSHHHHHHHHSEEEECS-----CHHHHHHHHCT--EEEE--TTT-T
T ss_pred cEEEEEECCCcHHHHHHHHhccCCcEEEEech--hhHHHHHHHcCEEEeCC----CccHHHHHHHcCCCeeccCCCCcch
Confidence 444 445665443333332222 479999998 78999999999998543 3678999999999998766554
Q ss_pred -----cccccccCCCCcceeecCC--CCHHHHHHHHHHHhhChHHHHHHHHH
Q 022615 194 -----IPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQA 238 (294)
Q Consensus 194 -----~~e~~~~~~~~~~g~~~~~--~d~~~l~~~i~~ll~~~~~~~~~~~~ 238 (294)
....+ .....+..+.. .+.+.+.+.|..++.++.....+..+
T Consensus 106 ~~q~~na~~~---~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 106 NHQEENAKEL---AKKGAAIMLDESELNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp -CHHHHHHHH---HHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred HHHHHHHHHH---HHcCCccccCcccCCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 11222 12223333332 23678999999999888765555444
No 127
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.12 E-value=4.5e-05 Score=64.10 Aligned_cols=121 Identities=10% Similarity=0.140 Sum_probs=78.9
Q ss_pred CceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCC
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 170 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e 170 (294)
..++++.|. .+...+++++.+++++.+++.+..... ..+ ..|+.+.++.+ +++.++|..||++|.-+.
T Consensus 189 ~~iLv~~g~----~~~~~l~~~l~~~~~~~~i~~~~~~~~---~~~--~~~v~~~~~~~-~~~~~~l~~ad~vI~~~G-- 256 (321)
T TIGR00661 189 DYILVYIGF----EYRYKILELLGKIANVKFVCYSYEVAK---NSY--NENVEIRRITT-DNFKELIKNAELVITHGG-- 256 (321)
T ss_pred CcEEEECCc----CCHHHHHHHHHhCCCeEEEEeCCCCCc---ccc--CCCEEEEECCh-HHHHHHHHhCCEEEECCC--
Confidence 345666543 345667888888887666554322111 111 34788888775 689999999999997652
Q ss_pred CcchHHHHHHhcCCCEEeecCCCccc------ccccCCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 171 TLGLVVLEAMSSGIPVVGVRAGGIPD------IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~~~~~~e------~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
..++.|++++|+|+|..+..+..| .+ ...+.|...+..+. ++.+++...++++
T Consensus 257 --~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l---~~~g~~~~l~~~~~-~~~~~~~~~~~~~ 315 (321)
T TIGR00661 257 --FSLISEALSLGKPLIVIPDLGQFEQGNNAVKL---EDLGCGIALEYKEL-RLLEAILDIRNMK 315 (321)
T ss_pred --hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH---HHCCCEEEcChhhH-HHHHHHHhccccc
Confidence 346899999999999987754323 23 44566777766665 5555555554443
No 128
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=5.1e-05 Score=63.86 Aligned_cols=229 Identities=19% Similarity=0.224 Sum_probs=137.0
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHH----HHH------------hhcCC
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEM----RWR------------LSNGE 88 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~----~~~------------~~~~~ 88 (294)
.++|.....|+...++|+-+.-..+..... +.=.+.|||.+...|...-.-... +.+ ..+..
T Consensus 244 C~ERaa~h~AhVFTTVSeITa~EAeHlLkR--KPD~itPNGLNV~KFsA~HEFQNLHA~~KekIndFVRGHF~GhlDFdL 321 (692)
T KOG3742|consen 244 CLERAAAHTAHVFTTVSEITALEAEHLLKR--KPDVITPNGLNVKKFSAVHEFQNLHAQKKEKINDFVRGHFHGHLDFDL 321 (692)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHhc--CCCeeCCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 578888888999999998776555443322 233567999998877543221110 000 12334
Q ss_pred CCCceEEEeeccc-ccccHHHHHHHHHhCC--------C---cEEEEEcC------------------------------
Q 022615 89 PDKPLIVHVGRLG-VEKSLDFLKRVMDRLP--------E---ARIAFIGD------------------------------ 126 (294)
Q Consensus 89 ~~~~~i~~~G~~~-~~k~~~~l~~~~~~~~--------~---~~l~i~G~------------------------------ 126 (294)
++..++..+||.. ..||.+.+++++.++. + +.|.|...
T Consensus 322 dkTlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s~~TVVaFlImPaktN~FnVesLkgqAv~kqL~dtv~~Vk~~~ 401 (692)
T KOG3742|consen 322 DKTLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGSPKTVVAFLIMPAKTNSFNVESLKGQAVRKQLWDTVNEVKEKV 401 (692)
T ss_pred cceEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCCCceEEEEEEeecCCCccchhhhccHHHHHHHHHHHHHHHHHH
Confidence 5667888899884 5799999999998761 1 23344321
Q ss_pred ----------C--ccHHHH---------Hhhh-----------------cCC---------------------CeEEEec
Q 022615 127 ----------G--PYREEL---------EKMF-----------------TGM---------------------PAVFTGM 147 (294)
Q Consensus 127 ----------~--~~~~~~---------~~~~-----------------~~~---------------------~v~~~g~ 147 (294)
| ++..++ +..+ .+. .|+|++.
T Consensus 402 Gkrifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa~DpiL~~iRr~~LFN~~~DRVKvifHPE 481 (692)
T KOG3742|consen 402 GKRIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDANDPILSSIRRIGLFNSPSDRVKVIFHPE 481 (692)
T ss_pred HHHHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccccchHHHHhHhhhcccCcccceEEEecHH
Confidence 0 000000 0000 000 1333322
Q ss_pred -c------cchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccC--CCCcceeecC-------
Q 022615 148 -L------LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED--QDGKIGYLFN------- 211 (294)
Q Consensus 148 -~------~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~--~~~~~g~~~~------- 211 (294)
+ -.-|..++.+.|++.++||++|.+|.+..|.-.+|+|-|+++..|+..+.++. .+...|+.+-
T Consensus 482 FLss~sPllglDYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~ 561 (692)
T KOG3742|consen 482 FLSSTSPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSP 561 (692)
T ss_pred HhccCCCCcCCCHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCCh
Confidence 1 12368899999999999999999999999999999999999998776555221 1122444332
Q ss_pred CCCHHHHHHHHHHHhhChHHHHHHHHHHHH-HH-HhCCHHHHHHHHH
Q 022615 212 PGDLDDCLSKLEPLLYNQELRETMGQAARQ-EM-EKYDWRAATRTIR 256 (294)
Q Consensus 212 ~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~-~~-~~~s~~~~~~~~~ 256 (294)
.++.+++++.+..+.. ...++++.+..+. .+ +-.+|..+...+.
T Consensus 562 deSv~qL~~~m~~F~~-qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~ 607 (692)
T KOG3742|consen 562 DESVQQLASFMYEFCK-QSRRQRIIQRNRTERLSDLLDWKYLGRYYR 607 (692)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHhcchhhHHHHHhHHHHhHHHH
Confidence 2345566666655543 2334444444332 23 3478887776665
No 129
>PLN02670 transferase, transferring glycosyl groups
Probab=98.04 E-value=0.0002 Score=63.00 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=97.9
Q ss_pred CCCceEEEeeccc--ccccHHHHHHHHHhCCCcEEEEE-cC--Cc-------cHHHHHhhhcCCCeEEEecccchhHHHH
Q 022615 89 PDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFI-GD--GP-------YREELEKMFTGMPAVFTGMLLGEELSQA 156 (294)
Q Consensus 89 ~~~~~i~~~G~~~--~~k~~~~l~~~~~~~~~~~l~i~-G~--~~-------~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 156 (294)
++..+.+.+|... ....+..+..+++..+. .|+++ .. +. ..+.+.+..+..++.+.+++|+.+ +
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~-~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~---I 352 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKSET-PFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVK---I 352 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCC-CEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHH---H
Confidence 3456677778763 23456677778887765 44333 21 11 112233334444577889998766 5
Q ss_pred HhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCCcceeecCC------CCHHHHHHHHHHHh
Q 022615 157 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP------GDLDDCLSKLEPLL 226 (294)
Q Consensus 157 ~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~~~------~d~~~l~~~i~~ll 226 (294)
++...+..+-+. +.-++++|++++|+|+|+.+.. .....+ ...+.|+.+.. -+.+++.++|.+++
T Consensus 353 L~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v---~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm 427 (472)
T PLN02670 353 LSHESVGGFLTH--CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLL---HGKKLGLEVPRDERDGSFTSDSVAESVRLAM 427 (472)
T ss_pred hcCcccceeeec--CCcchHHHHHHcCCCEEeCcchhccHHHHHHH---HHcCeeEEeeccccCCcCcHHHHHHHHHHHh
Confidence 666666444442 3457899999999999997543 233333 23456665532 25899999999999
Q ss_pred hChHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHH
Q 022615 227 YNQELRETMGQAARQEM----EKYDWRAATRTIRNEQYNA 262 (294)
Q Consensus 227 ~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~l~~~ 262 (294)
.+++ -.++++++++.. ++=....+++.+++.+++.
T Consensus 428 ~~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 428 VDDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred cCcc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 7752 123444444443 3355666666666555443
No 130
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.04 E-value=1.7e-06 Score=65.58 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCC
Q 022615 23 MWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF 71 (294)
Q Consensus 23 ~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~ 71 (294)
...+++.+++.+|.++++|+.+++.+.+ ++.+++++.+||||+|.+.|
T Consensus 129 ~~~~~~~~~~~~~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 129 NFRIERKLYKKADRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp HHCTTHHHHCCSSEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH
T ss_pred hhhhhhhHHhcCCEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHc
Confidence 3445677789999999999999999999 88888999999999999876
No 131
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.83 E-value=0.014 Score=50.89 Aligned_cols=213 Identities=8% Similarity=-0.004 Sum_probs=114.2
Q ss_pred cccCCCcccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccch----HHHHHhhcC
Q 022615 12 PRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS----EMRWRLSNG 87 (294)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~----~~~~~~~~~ 87 (294)
+...++...+..+.+.+++++++|.|.+=.+...+.+++. |++..++.+.+ |+.+.-+....+ .........
T Consensus 155 gqsiGPf~~~~~r~l~r~vl~~~~~ItvRD~~S~~~Lk~l-Gv~~~~v~~~a---DpAF~L~~~~~~~~~~~~~~~~~~~ 230 (426)
T PRK10017 155 GHSVGPFQDEQFNQLANYVFGHCDALILRESVSLDLMKRS-NITTAKVEHGV---DTAWLVDHHTEDFTASYAVQHWLDV 230 (426)
T ss_pred CCcCCCcCCHHHHHHHHHHHhcCCEEEEccHHHHHHHHHh-CCCccceEEec---ChhhhCCccccccccchhhhhhhcc
Confidence 3344444555667899999999999999999889999775 45555677665 333222211100 000001001
Q ss_pred CCCCceEEEe-eccccc--------c-cHHHHHHHHHhC--CCcEEEEEcC-------Ccc-HH---HHHhhhcCC-CeE
Q 022615 88 EPDKPLIVHV-GRLGVE--------K-SLDFLKRVMDRL--PEARIAFIGD-------GPY-RE---ELEKMFTGM-PAV 143 (294)
Q Consensus 88 ~~~~~~i~~~-G~~~~~--------k-~~~~l~~~~~~~--~~~~l~i~G~-------~~~-~~---~~~~~~~~~-~v~ 143 (294)
...+..|++. ..+.+. . -...+.++++.+ .+.+++++.. +.+ .. .+.+..... ++.
T Consensus 231 ~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~ 310 (426)
T PRK10017 231 AAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYH 310 (426)
T ss_pred cccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhccccccee
Confidence 1223344333 223211 1 113333444433 3555555432 122 22 222232222 222
Q ss_pred -EEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC-CcccccccCCCCcceeec--CCCCHHHHH
Q 022615 144 -FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG-GIPDIIPEDQDGKIGYLF--NPGDLDDCL 219 (294)
Q Consensus 144 -~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~-~~~e~~~~~~~~~~g~~~--~~~d~~~l~ 219 (294)
+.+..+..++..+++.||++|..- -..++=|++.|+|+|+-... -...++.. -+...+++ ..-+.+++.
T Consensus 311 vi~~~~~~~e~~~iIs~~dl~ig~R-----lHa~I~a~~~gvP~i~i~Y~~K~~~~~~~--lg~~~~~~~~~~l~~~~Li 383 (426)
T PRK10017 311 VVMDELNDLEMGKILGACELTVGTR-----LHSAIISMNFGTPAIAINYEHKSAGIMQQ--LGLPEMAIDIRHLLDGSLQ 383 (426)
T ss_pred EecCCCChHHHHHHHhhCCEEEEec-----chHHHHHHHcCCCEEEeeehHHHHHHHHH--cCCccEEechhhCCHHHHH
Confidence 344455678889999999998553 34567799999999875432 12222211 02222322 334678899
Q ss_pred HHHHHHhhChHHHHHH
Q 022615 220 SKLEPLLYNQELRETM 235 (294)
Q Consensus 220 ~~i~~ll~~~~~~~~~ 235 (294)
+.+.+++++.+.+++.
T Consensus 384 ~~v~~~~~~r~~~~~~ 399 (426)
T PRK10017 384 AMVADTLGQLPALNAR 399 (426)
T ss_pred HHHHHHHhCHHHHHHH
Confidence 9999999987765443
No 132
>PLN03004 UDP-glycosyltransferase
Probab=97.82 E-value=0.00043 Score=60.54 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=85.7
Q ss_pred CCCceEEEeecc--cccccHHHHHHHHHhCCCcEEEEEcCCc------------cHHHHHhhhcCCCeEEEecccchhHH
Q 022615 89 PDKPLIVHVGRL--GVEKSLDFLKRVMDRLPEARIAFIGDGP------------YREELEKMFTGMPAVFTGMLLGEELS 154 (294)
Q Consensus 89 ~~~~~i~~~G~~--~~~k~~~~l~~~~~~~~~~~l~i~G~~~------------~~~~~~~~~~~~~v~~~g~~~~~~~~ 154 (294)
++..+.+.+|.. -+.+....+..+++..+.--+..+.... ..+.+.+..+..++.+.+++|+.+
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~-- 346 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVP-- 346 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHH--
Confidence 355677788877 2344566777788877663333333210 112233444556888899998876
Q ss_pred HHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecC----CCcccccccCC-CCcceeecCC-----CCHHHHHHHHHH
Q 022615 155 QAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA----GGIPDIIPEDQ-DGKIGYLFNP-----GDLDDCLSKLEP 224 (294)
Q Consensus 155 ~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~----~~~~e~~~~~~-~~~~g~~~~~-----~d~~~l~~~i~~ 224 (294)
+++.+++..+-+. +.-++++|++++|+|+|+.+. ......+ . .-+.|+.++. -+.+++.+++++
T Consensus 347 -iL~H~~v~~FvTH--~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~---~~~~g~g~~l~~~~~~~~~~e~l~~av~~ 420 (451)
T PLN03004 347 -VLNHKAVGGFVTH--CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMI---VDEIKIAISMNESETGFVSSTEVEKRVQE 420 (451)
T ss_pred -HhCCCccceEecc--CcchHHHHHHHcCCCEEeccccccchhhHHHH---HHHhCceEEecCCcCCccCHHHHHHHHHH
Confidence 6778888555543 345689999999999998754 2333333 2 2356655542 378999999999
Q ss_pred HhhChH
Q 022615 225 LLYNQE 230 (294)
Q Consensus 225 ll~~~~ 230 (294)
++.+++
T Consensus 421 vm~~~~ 426 (451)
T PLN03004 421 IIGECP 426 (451)
T ss_pred HhcCHH
Confidence 998754
No 133
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.79 E-value=0.00013 Score=65.42 Aligned_cols=131 Identities=17% Similarity=0.228 Sum_probs=80.4
Q ss_pred CCCceEEEeeccc---ccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe
Q 022615 89 PDKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 89 ~~~~~i~~~G~~~---~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
++..+++.+|.+. +.+-...++++++++|. ++++.-.+.....+ ..|+.+..++|+.+ +++...+-++
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~-~~iW~~~~~~~~~l-----~~n~~~~~W~PQ~~---lL~hp~v~~f 345 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQ-RFIWKYEGEPPENL-----PKNVLIVKWLPQND---LLAHPRVKLF 345 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTT-EEEEEETCSHGCHH-----HTTEEEESS--HHH---HHTSTTEEEE
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCC-cccccccccccccc-----cceEEEeccccchh---hhhcccceee
Confidence 3456777888763 23335678899999987 66665444222222 23788999998754 5777776555
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCCcceeecCC--CCHHHHHHHHHHHhhChHHHH
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRE 233 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~~~--~d~~~l~~~i~~ll~~~~~~~ 233 (294)
-+. |.-+++.||+.+|+|+|+-+.- .....+ ++.+.|...+. -+.+++.++|.++++|+...+
T Consensus 346 itH--gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~---~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~ 414 (500)
T PF00201_consen 346 ITH--GGLNSTQEALYHGVPMLGIPLFGDQPRNAARV---EEKGVGVVLDKNDLTEEELRAAIREVLENPSYKE 414 (500)
T ss_dssp EES----HHHHHHHHHCT--EEE-GCSTTHHHHHHHH---HHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHHH
T ss_pred eec--cccchhhhhhhccCCccCCCCcccCCccceEE---EEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHHH
Confidence 543 5567899999999999997553 222333 33445555543 357899999999999976443
No 134
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.78 E-value=0.0046 Score=54.68 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=82.9
Q ss_pred CCceEEEeecccc--cccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeec
Q 022615 90 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 90 ~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
...+.+.+|.... ...+..++++++.. +..++++..++ ...+.+.. ..++.+.+++|+.+ ++...++..+-+
T Consensus 274 ~~vvyvsfGs~~~~~~~~~~~~~~~l~~~-~~~~lw~~~~~-~~~~~~~~-~~~~~v~~w~pQ~~---iL~h~~v~~fvt 347 (459)
T PLN02448 274 GSVLYVSLGSFLSVSSAQMDEIAAGLRDS-GVRFLWVARGE-ASRLKEIC-GDMGLVVPWCDQLK---VLCHSSVGGFWT 347 (459)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCc-hhhHhHhc-cCCEEEeccCCHHH---HhccCccceEEe
Confidence 4466777787632 23366677777766 45666554332 11232222 23667778887766 455666644333
Q ss_pred CCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCC-CcceeecC-------CCCHHHHHHHHHHHhhCh-HHHHH
Q 022615 168 ESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQD-GKIGYLFN-------PGDLDDCLSKLEPLLYNQ-ELRET 234 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~-~~~g~~~~-------~~d~~~l~~~i~~ll~~~-~~~~~ 234 (294)
.+.-++++||+++|+|+|+.+.. .....+ .+ -+.|+.+. .-+.+++.+++.+++.++ +.-++
T Consensus 348 --HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v---~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~ 422 (459)
T PLN02448 348 --HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLI---VEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKE 422 (459)
T ss_pred --cCchhHHHHHHHcCCCEEeccccccchhhHHHH---HHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHH
Confidence 24456899999999999987543 222333 22 13454442 236789999999999764 33344
Q ss_pred HHHHHHH
Q 022615 235 MGQAARQ 241 (294)
Q Consensus 235 ~~~~~~~ 241 (294)
+++++.+
T Consensus 423 ~r~~a~~ 429 (459)
T PLN02448 423 MRRRAKE 429 (459)
T ss_pred HHHHHHH
Confidence 4444433
No 135
>PLN02562 UDP-glycosyltransferase
Probab=97.72 E-value=0.0016 Score=57.18 Aligned_cols=135 Identities=10% Similarity=0.005 Sum_probs=84.1
Q ss_pred CCceEEEeeccc---ccccHHHHHHHHHhCCCcEEEE-EcCC---ccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCE
Q 022615 90 DKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAF-IGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDV 162 (294)
Q Consensus 90 ~~~~i~~~G~~~---~~k~~~~l~~~~~~~~~~~l~i-~G~~---~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~ 162 (294)
...+++.+|... ..+.+..+..+++..+. .|++ +..+ ...+.+.+.. ..|+.+.+++|+.+ +++..++
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~-~fiW~~~~~~~~~l~~~~~~~~-~~~~~v~~w~PQ~~---iL~h~~v 347 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGR-PFIWVLNPVWREGLPPGYVERV-SKQGKVVSWAPQLE---VLKHQAV 347 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCC-CEEEEEcCCchhhCCHHHHHHh-ccCEEEEecCCHHH---HhCCCcc
Confidence 346777888753 44567778888888865 4443 4321 1222222222 23677789987766 4666665
Q ss_pred EEeecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCC-CcceeecCCCCHHHHHHHHHHHhhChHHHHH
Q 022615 163 FVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRET 234 (294)
Q Consensus 163 ~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~-~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~ 234 (294)
..+-+. +.-++++|++++|+|+|+.+.. .....+ .+ .+.|+-+..-+.+++.+++++++.+++.+++
T Consensus 348 ~~fvtH--~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~---~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~ 419 (448)
T PLN02562 348 GCYLTH--CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYI---VDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGER 419 (448)
T ss_pred ceEEec--CcchhHHHHHHcCCCEEeCCcccchHHHHHHH---HHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHHH
Confidence 444443 3356789999999999986543 233333 21 2455555555789999999999987654433
No 136
>PLN02208 glycosyltransferase family protein
Probab=97.72 E-value=0.0077 Score=52.81 Aligned_cols=204 Identities=10% Similarity=0.052 Sum_probs=104.5
Q ss_pred HHHhCCeEEecchhhHH-HHHHhccCC-cCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccc--cc-
Q 022615 30 LHRAADLTLVPSVAIGK-DLEAARVTA-ANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EK- 104 (294)
Q Consensus 30 ~~~~ad~ii~~s~~~~~-~~~~~~~~~-~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k- 104 (294)
.+..+|.|++.|-...+ .+.+....+ ..++..|..-..... .+.....+...-.....++..+.+.+|.... .+
T Consensus 190 ~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~-~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q 268 (442)
T PLN02208 190 GLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPD-TSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQ 268 (442)
T ss_pred hhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcC-CCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHH
Confidence 45689999998844332 222222111 124554433211110 0011111222222222334667778887742 11
Q ss_pred cHHHHHHH-HHhCCCcEEEEEcC-C------ccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHH
Q 022615 105 SLDFLKRV-MDRLPEARIAFIGD-G------PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVV 176 (294)
Q Consensus 105 ~~~~l~~~-~~~~~~~~l~i~G~-~------~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~ 176 (294)
-.+.+..+ +...| +.+++--. + ...+.+.+..+..|+.+.+++|+.+ +++...+..+-+. +.-+++
T Consensus 269 ~~e~~~~l~~s~~p-f~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~---iL~H~~v~~FvtH--cG~nS~ 342 (442)
T PLN02208 269 FQELCLGMELTGLP-FLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPL---ILDHPSIGCFVNH--CGPGTI 342 (442)
T ss_pred HHHHHHHHHhCCCc-EEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHH---HhcCCccCeEEcc--CCchHH
Confidence 22223332 33333 33333211 1 1122334444456888889998876 5677776555543 344679
Q ss_pred HHHHhcCCCEEeecCC----CcccccccCCCCcceeecCC-----CCHHHHHHHHHHHhhCh-HHHHHHHHHHHHH
Q 022615 177 LEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP-----GDLDDCLSKLEPLLYNQ-ELRETMGQAARQE 242 (294)
Q Consensus 177 ~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~~~-----~d~~~l~~~i~~ll~~~-~~~~~~~~~~~~~ 242 (294)
+|++++|+|+|+.+.. ....++. +..+.|+.+.. -+.+++.++|.++++++ +..+++++++++.
T Consensus 343 ~Eai~~GVP~l~~P~~~DQ~~na~~~~--~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 343 WESLVSDCQMVLIPFLSDQVLFTRLMT--EEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred HHHHHcCCCEEecCcchhhHHHHHHHH--HHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 9999999999997543 2222220 11345555532 26789999999999765 3445555555544
No 137
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.68 E-value=0.0034 Score=55.81 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=79.9
Q ss_pred CCCceEEEeecccc--cccHHHHHHHHHhCCCcEEEEEcCC--------ccHHHHHhhhcCCCeEEEecccchhHHHHHh
Q 022615 89 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDG--------PYREELEKMFTGMPAVFTGMLLGEELSQAYA 158 (294)
Q Consensus 89 ~~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i~G~~--------~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 158 (294)
+...+.+.+|.... .+.+..+.++++..+.--+..++.. ...+.+.+.....++.+.+++|+. +++.
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~---~iL~ 360 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQV---LILD 360 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHH---HHhc
Confidence 34567778887632 3455666677776654223334421 111233333445588888999775 5677
Q ss_pred cCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCCcceeec----------CCCCHHHHHHHHHH
Q 022615 159 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLF----------NPGDLDDCLSKLEP 224 (294)
Q Consensus 159 ~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~----------~~~d~~~l~~~i~~ 224 (294)
.+++..+-+. +.-++++||+++|+|+|+.+.. .....+. +..+.|+-+ ..-+.+++.+++++
T Consensus 361 h~~v~~fvtH--~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~--~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~ 436 (482)
T PLN03007 361 HQATGGFVTH--CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVT--QVLRTGVSVGAKKLVKVKGDFISREKVEKAVRE 436 (482)
T ss_pred cCccceeeec--CcchHHHHHHHcCCCeeeccchhhhhhhHHHHH--HhhcceeEeccccccccccCcccHHHHHHHHHH
Confidence 7777554443 3356899999999999997543 2222210 001223222 12378899999999
Q ss_pred HhhCh
Q 022615 225 LLYNQ 229 (294)
Q Consensus 225 ll~~~ 229 (294)
++.++
T Consensus 437 ~m~~~ 441 (482)
T PLN03007 437 VIVGE 441 (482)
T ss_pred HhcCc
Confidence 99775
No 138
>PLN02210 UDP-glucosyl transferase
Probab=97.66 E-value=0.0017 Score=57.15 Aligned_cols=158 Identities=11% Similarity=0.087 Sum_probs=89.8
Q ss_pred CCceEEEeecccc--cccHHHHHHHHHhCCCcEEEE-EcCC---ccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEE
Q 022615 90 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAF-IGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVF 163 (294)
Q Consensus 90 ~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i-~G~~---~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~ 163 (294)
...+.+.+|.... ...+..+..+++..+. .|++ ++.. .....+.+.....+..+.+++|+.+ +++.+++.
T Consensus 269 ~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~-~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~---iL~h~~vg 344 (456)
T PLN02210 269 SSVVYISFGSMLESLENQVETIAKALKNRGV-PFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEK---ILSHMAIS 344 (456)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCC-CEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHH---HhcCcCcC
Confidence 4567777887633 3345666677776644 4443 4421 1222333333223445678887765 67777755
Q ss_pred EeecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCC-CcceeecC------CCCHHHHHHHHHHHhhChH--
Q 022615 164 VMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQD-GKIGYLFN------PGDLDDCLSKLEPLLYNQE-- 230 (294)
Q Consensus 164 l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~-~~~g~~~~------~~d~~~l~~~i~~ll~~~~-- 230 (294)
.+-+. +.-++++|++++|+|+|+.+..+ ....+ .+ -+.|+.+. .-+.+++.+++++++.+++
T Consensus 345 ~FitH--~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~---~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~ 419 (456)
T PLN02210 345 CFVTH--CGWNSTIETVVAGVPVVAYPSWTDQPIDARLL---VDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAA 419 (456)
T ss_pred eEEee--CCcccHHHHHHcCCCEEecccccccHHHHHHH---HHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHH
Confidence 44442 23357889999999999975532 22233 22 35565553 1377899999999997643
Q ss_pred ----HHHHHHHHHHHHHHh-CCHHHHHHHHH
Q 022615 231 ----LRETMGQAARQEMEK-YDWRAATRTIR 256 (294)
Q Consensus 231 ----~~~~~~~~~~~~~~~-~s~~~~~~~~~ 256 (294)
...++++.+++.+.+ =|.....++++
T Consensus 420 ~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v 450 (456)
T PLN02210 420 DIRRRAAELKHVARLALAPGGSSARNLDLFI 450 (456)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 223444555555433 34444444444
No 139
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=97.60 E-value=5.7e-05 Score=56.10 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=34.9
Q ss_pred CcccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeecc
Q 022615 17 SWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 65 (294)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g 65 (294)
.+....++.+++.+++.+|.++++|+.+++.+.+ ++.+++++.+||||
T Consensus 113 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 113 RWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp -HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHH-H---GGGEEE----
T ss_pred chhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHH-hCCCCCcEEEeCcC
Confidence 4455566788999999999999999999999999 66788999999997
No 140
>PLN00164 glucosyltransferase; Provisional
Probab=97.60 E-value=0.02 Score=50.94 Aligned_cols=144 Identities=14% Similarity=0.086 Sum_probs=81.9
Q ss_pred CCceEEEeecccc--cccHHHHHHHHHhCCCcEEE-EEcCCc---------------cHHHHHhhhcCCCeEEEecccch
Q 022615 90 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIA-FIGDGP---------------YREELEKMFTGMPAVFTGMLLGE 151 (294)
Q Consensus 90 ~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~-i~G~~~---------------~~~~~~~~~~~~~v~~~g~~~~~ 151 (294)
...+.+.+|.... .+.+..+..+++..+. .|+ ++.... ..+.+.+..+..++.+.+++|+.
T Consensus 272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~~-~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~ 350 (480)
T PLN00164 272 ASVVFLCFGSMGFFDAPQVREIAAGLERSGH-RFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQK 350 (480)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCC-CEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHH
Confidence 4456677776522 2336777777776654 443 433211 11122333344467777888776
Q ss_pred hHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCCcceeecCC-------CCHHHHHH
Q 022615 152 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP-------GDLDDCLS 220 (294)
Q Consensus 152 ~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~~~-------~d~~~l~~ 220 (294)
+ +++..++..+-+. +.-++++|++++|+|+|+.+.. .....+- +.-+.|+.+.. -+.+++.+
T Consensus 351 ~---iL~h~~vg~fvtH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~--~~~gvG~~~~~~~~~~~~~~~e~l~~ 423 (480)
T PLN00164 351 E---ILAHAAVGGFVTH--CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELV--ADMGVAVAMKVDRKRDNFVEAAELER 423 (480)
T ss_pred H---HhcCcccCeEEee--cccchHHHHHHcCCCEEeCCccccchhHHHHHH--HHhCeEEEeccccccCCcCcHHHHHH
Confidence 5 5666775444442 3346789999999999986543 2222220 22355555421 26789999
Q ss_pred HHHHHhhChH-HHHHHHHHHHH
Q 022615 221 KLEPLLYNQE-LRETMGQAARQ 241 (294)
Q Consensus 221 ~i~~ll~~~~-~~~~~~~~~~~ 241 (294)
+|.+++.+++ +.+++++++++
T Consensus 424 av~~vm~~~~~~~~~~r~~a~~ 445 (480)
T PLN00164 424 AVRSLMGGGEEEGRKAREKAAE 445 (480)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 9999997643 23444444433
No 141
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.56 E-value=0.027 Score=49.92 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=82.1
Q ss_pred CCCceEEEeecccc--cccHHHHHHHHHhCCCcEEEEEcC---C---------------c-----cHHHHHhhhcCCCeE
Q 022615 89 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGD---G---------------P-----YREELEKMFTGMPAV 143 (294)
Q Consensus 89 ~~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i~G~---~---------------~-----~~~~~~~~~~~~~v~ 143 (294)
++..+.+.+|.... .+....+..+++..+.--+..+.. + . ..+.+.+..+..++.
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~v 341 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFV 341 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEE
Confidence 45567778887633 445677788888887633333310 0 0 112233344455788
Q ss_pred EEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecCC----CCH
Q 022615 144 FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP----GDL 215 (294)
Q Consensus 144 ~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~~----~d~ 215 (294)
+.+++|+.+ +++...+..+-+ .+.-++++|++.+|+|+|+.+..+ ....+. +.-+.|..++. -+.
T Consensus 342 v~~W~PQ~~---iL~h~~vg~Fit--H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~--~~~g~gv~~~~~~~~~~~ 414 (481)
T PLN02992 342 VPSWAPQAE---ILAHQAVGGFLT--HCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLS--DELGIAVRSDDPKEVISR 414 (481)
T ss_pred EeecCCHHH---HhCCcccCeeEe--cCchhHHHHHHHcCCCEEecCccchhHHHHHHHH--HHhCeeEEecCCCCcccH
Confidence 899998766 566666644333 244568999999999999975432 222320 12345555532 377
Q ss_pred HHHHHHHHHHhhCh
Q 022615 216 DDCLSKLEPLLYNQ 229 (294)
Q Consensus 216 ~~l~~~i~~ll~~~ 229 (294)
+++.++|.+++.++
T Consensus 415 ~~l~~av~~vm~~~ 428 (481)
T PLN02992 415 SKIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHHHhcCC
Confidence 89999999999764
No 142
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.55 E-value=0.0026 Score=53.35 Aligned_cols=180 Identities=17% Similarity=0.197 Sum_probs=103.1
Q ss_pred HHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCC-CCCccchHHHHHhhcCCCCCceEEEeecc--cc-
Q 022615 27 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF-HPRFRSSEMRWRLSNGEPDKPLIVHVGRL--GV- 102 (294)
Q Consensus 27 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~G~~--~~- 102 (294)
.+..+..||.++++.-.-...+... |.. +++. -++|++.-.+ ++..+......+.+ ..++..+++=...+ ..
T Consensus 119 ~~Lt~Pla~~i~~P~~~~~~~~~~~-G~~-~~i~-~y~G~~E~ayl~~F~Pd~~vl~~lg-~~~~~yIvvR~~~~~A~y~ 194 (335)
T PF04007_consen 119 NRLTLPLADVIITPEAIPKEFLKRF-GAK-NQIR-TYNGYKELAYLHPFKPDPEVLKELG-LDDEPYIVVRPEAWKASYD 194 (335)
T ss_pred ceeehhcCCeeECCcccCHHHHHhc-CCc-CCEE-EECCeeeEEeecCCCCChhHHHHcC-CCCCCEEEEEeccccCeee
Confidence 4556778999999887666665554 332 2232 2667664322 23233344445554 23444444422222 11
Q ss_pred --ccc-HHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH
Q 022615 103 --EKS-LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 103 --~k~-~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea 179 (294)
.++ +..+++.+++..+. ++++........ +.+..++.+.... -+..+++..||++|.- .|+...||
T Consensus 195 ~~~~~i~~~ii~~L~~~~~~-vV~ipr~~~~~~---~~~~~~~~i~~~~--vd~~~Ll~~a~l~Ig~-----ggTMa~EA 263 (335)
T PF04007_consen 195 NGKKSILPEIIEELEKYGRN-VVIIPRYEDQRE---LFEKYGVIIPPEP--VDGLDLLYYADLVIGG-----GGTMAREA 263 (335)
T ss_pred cCccchHHHHHHHHHhhCce-EEEecCCcchhh---HHhccCccccCCC--CCHHHHHHhcCEEEeC-----CcHHHHHH
Confidence 111 34455555555444 666654433222 2233344333322 3566899999999844 37888999
Q ss_pred HhcCCCEEeecCC---CcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 180 MSSGIPVVGVRAG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 180 ~a~G~pvI~~~~~---~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
...|+|.|.+-.+ +..+++ .+.|+++...|++++.+.+...+
T Consensus 264 A~LGtPaIs~~~g~~~~vd~~L-----~~~Gll~~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 264 ALLGTPAISCFPGKLLAVDKYL-----IEKGLLYHSTDPDEIVEYVRKNL 308 (335)
T ss_pred HHhCCCEEEecCCcchhHHHHH-----HHCCCeEecCCHHHHHHHHHHhh
Confidence 9999999986433 334444 34578888889999998666654
No 143
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0023 Score=58.43 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=86.5
Q ss_pred CCCceEEEeecccccccHHHHHH----HHHhC-----CCcEEEEEcCC-c---cHHHHHhhhc--------CCCeEEEec
Q 022615 89 PDKPLIVHVGRLGVEKSLDFLKR----VMDRL-----PEARIAFIGDG-P---YREELEKMFT--------GMPAVFTGM 147 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~k~~~~l~~----~~~~~-----~~~~l~i~G~~-~---~~~~~~~~~~--------~~~v~~~g~ 147 (294)
++...++++-|+..+|...+.+. +...+ |.+.+++.|.. | ..+.+.+++. ..+|.|+..
T Consensus 485 p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~n 564 (750)
T COG0058 485 PNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPN 564 (750)
T ss_pred CCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCC
Confidence 46778899999999998654432 22222 33555666742 1 1122222221 235788877
Q ss_pred ccchhHHHHHhcCCEEEeecC--CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCC
Q 022615 148 LLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP 212 (294)
Q Consensus 148 ~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~ 212 (294)
.+-.-...++..||+-...|. .|+.|++-+-++..|.+.|+|-.|...|+... -.+.+|++|-.
T Consensus 565 YdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~-vg~~N~~~fG~ 630 (750)
T COG0058 565 YDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEH-VGGENGWIFGE 630 (750)
T ss_pred CChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHh-cCCCceEEeCC
Confidence 766667789999999998765 79999999999999999999999998888821 17889998864
No 144
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.51 E-value=0.0028 Score=51.34 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=111.0
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccC-CCCCCCccchHHHHHhhcCCCCCceEEEeec-----
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDS-ESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR----- 99 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~----- 99 (294)
-.+.++..||.+++++..-.+.+...+. .+.++ +-.||+-. ..........+...+.+...++..+++=.-.
T Consensus 119 qnkl~~Pla~~ii~P~~~~~~~~~~~G~-~p~~i-~~~~giae~~~v~~f~pd~evlkeLgl~~~~~yIVmRpe~~~A~y 196 (346)
T COG1817 119 QNKLTLPLADVIITPEAIDEEELLDFGA-DPNKI-SGYNGIAELANVYGFVPDPEVLKELGLEEGETYIVMRPEPWGAHY 196 (346)
T ss_pred HhhcchhhhhheecccccchHHHHHhCC-Cccce-ecccceeEEeecccCCCCHHHHHHcCCCCCCceEEEeecccccee
Confidence 3677888999999999887777776554 33333 23444321 1111122334555566554444555553332
Q ss_pred ccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH
Q 022615 100 LGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea 179 (294)
....++.+.+.++++.+++.-.+++-.... .++..+..++..... +--|-.+++-.|++++- +.|+..-||
T Consensus 197 ~~g~~~~~~~~~li~~l~k~giV~ipr~~~---~~eife~~~n~i~pk-~~vD~l~Llyya~lvig-----~ggTMarEa 267 (346)
T COG1817 197 DNGDRGISVLPDLIKELKKYGIVLIPREKE---QAEIFEGYRNIIIPK-KAVDTLSLLYYATLVIG-----AGGTMAREA 267 (346)
T ss_pred eccccchhhHHHHHHHHHhCcEEEecCchh---HHHHHhhhccccCCc-ccccHHHHHhhhheeec-----CCchHHHHH
Confidence 244556666777777776655666654322 223333332221111 11233357778888873 347778999
Q ss_pred HhcCCCEEeecCC---CcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChH
Q 022615 180 MSSGIPVVGVRAG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 230 (294)
Q Consensus 180 ~a~G~pvI~~~~~---~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~ 230 (294)
...|+|.|+..-| +..++. -..|.++...|+.+..+...+.+.++.
T Consensus 268 AlLGtpaIs~~pGkll~vdk~l-----ie~G~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 268 ALLGTPAISCYPGKLLAVDKYL-----IEKGLLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred HHhCCceEEecCCccccccHHH-----HhcCceeecCCHHHHHHHHHHHhhchh
Confidence 9999999988633 344444 457788887788888888877776654
No 145
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.48 E-value=0.0021 Score=54.27 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=88.8
Q ss_pred eeccccCCCcccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCC
Q 022615 9 VYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGE 88 (294)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~ 88 (294)
+|++..-|.|..+. .+.+.+.+|.+++.-.+..+.+ +. ++.++.|++-.. ..+. .. . ..
T Consensus 107 yyi~PqvWAWr~~R----~~~i~k~~d~vl~ifPFE~~~y----g~---~~~~VGhPl~d~-~~~~--~~----~---~~ 165 (347)
T PRK14089 107 YYILPQVWAWKKGR----AKILEKYCDFLASILPFEVQFY----QS---KATYVGHPLLDE-IKEF--KK----D---LD 165 (347)
T ss_pred EEECccceeeCcch----HHHHHHHHhhhhccCCCCHHHh----CC---CCEEECCcHHHh-hhhh--hh----h---cC
Confidence 45555556665553 4456677788888776666665 22 566778775322 1110 00 0 12
Q ss_pred CCCceEEEeecccc--cccHHHHHHHHHhCCC--cEEEEEcCCccHHHHHhhhcCC-CeEEEecccchhHHHHHhcCCEE
Q 022615 89 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYASGDVF 163 (294)
Q Consensus 89 ~~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~--~~l~i~G~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~ 163 (294)
++..+.++.|+-.. .+.+..++++++.+.+ ..+++.|.... +.+++...+. .+.+. ++..++|+.||++
T Consensus 166 ~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~-~~i~~~~~~~~~~~~~-----~~~~~~m~~aDla 239 (347)
T PRK14089 166 KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKG-KDLKEIYGDISEFEIS-----YDTHKALLEAEFA 239 (347)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcH-HHHHHHHhcCCCcEEe-----ccHHHHHHhhhHH
Confidence 23445556665422 2345556677776643 56677775433 5555544332 33333 2567899999999
Q ss_pred EeecCCCCcchHHHHHHhcCCCEEee
Q 022615 164 VMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 164 l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
+..| |+..+|++.+|+|.|..
T Consensus 240 l~~S-----GT~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 240 FICS-----GTATLEAALIGTPFVLA 260 (347)
T ss_pred HhcC-----cHHHHHHHHhCCCEEEE
Confidence 9887 88888999999998764
No 146
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.45 E-value=0.0015 Score=52.15 Aligned_cols=138 Identities=10% Similarity=0.118 Sum_probs=80.5
Q ss_pred CCceEEEeecccccccHHHHHHHHHhCCCcEEEEE-cC-CccHHHHHhhhcC-CCeEEEecccchhHHHHHhcCCEEEee
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFI-GD-GPYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMP 166 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~-G~-~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l~p 166 (294)
.+-+++..|.-++..-.-.++..+.+.+ +.+.|+ |. .+....+++.... .++.++-.. ++|.++|..||+.+..
T Consensus 158 ~r~ilI~lGGsDpk~lt~kvl~~L~~~~-~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~--~dma~LMke~d~aI~A 234 (318)
T COG3980 158 KRDILITLGGSDPKNLTLKVLAELEQKN-VNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDT--NDMAELMKEADLAISA 234 (318)
T ss_pred hheEEEEccCCChhhhHHHHHHHhhccC-eeEEEEecCCCcchhHHHHHHhhCCCeeeEecc--hhHHHHHHhcchheec
Confidence 4446777777666433333334433333 555444 53 2444555555443 356665554 9999999999999865
Q ss_pred cCCCCcchHHHHHHhcCCC--EEe--ecCCCcccccccCCCCcceeecCC---CCHHHHHHHHHHHhhChHHHHHHHHHH
Q 022615 167 SESETLGLVVLEAMSSGIP--VVG--VRAGGIPDIIPEDQDGKIGYLFNP---GDLDDCLSKLEPLLYNQELRETMGQAA 239 (294)
Q Consensus 167 s~~e~~~~~~~Ea~a~G~p--vI~--~~~~~~~e~~~~~~~~~~g~~~~~---~d~~~l~~~i~~ll~~~~~~~~~~~~~ 239 (294)
. |.++.|++..|+| +|+ .+.......+ ..-|+.... -........+.++..|...++.+....
T Consensus 235 a-----GstlyEa~~lgvP~l~l~~a~NQ~~~a~~f-----~~lg~~~~l~~~l~~~~~~~~~~~i~~d~~~rk~l~~~~ 304 (318)
T COG3980 235 A-----GSTLYEALLLGVPSLVLPLAENQIATAKEF-----EALGIIKQLGYHLKDLAKDYEILQIQKDYARRKNLSFGS 304 (318)
T ss_pred c-----chHHHHHHHhcCCceEEeeeccHHHHHHHH-----HhcCchhhccCCCchHHHHHHHHHhhhCHHHhhhhhhcc
Confidence 4 8899999999999 332 3333333333 112222211 234566667777777877666655444
Q ss_pred H
Q 022615 240 R 240 (294)
Q Consensus 240 ~ 240 (294)
+
T Consensus 305 ~ 305 (318)
T COG3980 305 K 305 (318)
T ss_pred c
Confidence 3
No 147
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.45 E-value=0.0061 Score=53.47 Aligned_cols=143 Identities=10% Similarity=0.111 Sum_probs=80.8
Q ss_pred CCCceEEEeecccccccHHHHHHHHHhCCCcEEEEEcC-C---ccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEE
Q 022615 89 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGD-G---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 164 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~-~---~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l 164 (294)
++..+.+.+|.... -..+.+.+++..+.+..|+++=. + ...+.+.+.....++.+.+++|+.+ +++...+..
T Consensus 263 ~~svvyvsfGS~~~-~~~~~~~ela~gLs~~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~---iL~H~~v~~ 338 (449)
T PLN02173 263 QGSVVYIAFGSMAK-LSSEQMEEIASAISNFSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQ---VLSNKAIGC 338 (449)
T ss_pred CCceEEEEeccccc-CCHHHHHHHHHHhcCCCEEEEEeccchhcccchHHHhhcCCceEEeCCCCHHH---HhCCCccce
Confidence 34467778887642 22233444443343333433321 1 1112233333345788889998655 677777655
Q ss_pred eecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCC-cceeecCC------CCHHHHHHHHHHHhhChHHHH
Q 022615 165 MPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDG-KIGYLFNP------GDLDDCLSKLEPLLYNQELRE 233 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~-~~g~~~~~------~d~~~l~~~i~~ll~~~~~~~ 233 (294)
+-+. +..++++|++++|+|+|+.+.. ....++ .+. +.|+-+.. -+.+++.+++++++.+++ .+
T Consensus 339 FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v---~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~-~~ 412 (449)
T PLN02173 339 FMTH--CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYI---QDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK-SK 412 (449)
T ss_pred EEec--CccchHHHHHHcCCCEEecCchhcchHHHHHH---HHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh-HH
Confidence 5543 4457899999999999997543 223333 221 34544421 167999999999997643 24
Q ss_pred HHHHHHHH
Q 022615 234 TMGQAARQ 241 (294)
Q Consensus 234 ~~~~~~~~ 241 (294)
++++++++
T Consensus 413 ~~r~~a~~ 420 (449)
T PLN02173 413 EMKENAGK 420 (449)
T ss_pred HHHHHHHH
Confidence 44444443
No 148
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.42 E-value=0.0096 Score=52.77 Aligned_cols=163 Identities=15% Similarity=0.096 Sum_probs=88.3
Q ss_pred CCceEEEeecccc--cccHHHHHHHHHhCCCcEEEEEcCCc--------cHHHHHhhhcCCCeEEEecccchhHHHHHhc
Q 022615 90 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGP--------YREELEKMFTGMPAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 90 ~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i~G~~~--------~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 159 (294)
...+.+.+|.... ...+..+..+++..+.--+..++... ....+.+.....++.+.+++|+.+ ++..
T Consensus 283 ~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~---vL~h 359 (477)
T PLN02863 283 HKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVA---ILSH 359 (477)
T ss_pred CceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHH---HhcC
Confidence 4556777787632 23466777777776543344444211 112233333445788889998754 5666
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCCcceeecC-----CCCHHHHHHHHHHHhh-Ch
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFN-----PGDLDDCLSKLEPLLY-NQ 229 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~~-----~~d~~~l~~~i~~ll~-~~ 229 (294)
..+..+-+. +.-++++||+++|+|+|+.+.. .....+. +.-+.|+-+. .-+.+++.+++.+++. ++
T Consensus 360 ~~v~~fvtH--~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~--~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~ 435 (477)
T PLN02863 360 RAVGAFLTH--CGWNSVLEGLVAGVPMLAWPMAADQFVNASLLV--DELKVAVRVCEGADTVPDSDELARVFMESVSENQ 435 (477)
T ss_pred CCcCeEEec--CCchHHHHHHHcCCCEEeCCccccchhhHHHHH--HhhceeEEeccCCCCCcCHHHHHHHHHHHhhccH
Confidence 444333332 3456889999999999986543 2323220 1224554442 1267899999998874 33
Q ss_pred HHH---HHHHHHHHHHHHh-CCHHHHHHHHHHHH
Q 022615 230 ELR---ETMGQAARQEMEK-YDWRAATRTIRNEQ 259 (294)
Q Consensus 230 ~~~---~~~~~~~~~~~~~-~s~~~~~~~~~~~l 259 (294)
+.+ +++++.+++.+.+ =|..+..+++++.+
T Consensus 436 ~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i 469 (477)
T PLN02863 436 VERERAKELRRAALDAIKERGSSVKDLDGFVKHV 469 (477)
T ss_pred HHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 322 2333333333322 34444445555443
No 149
>PLN02207 UDP-glycosyltransferase
Probab=97.36 E-value=0.039 Score=48.73 Aligned_cols=131 Identities=10% Similarity=0.024 Sum_probs=74.6
Q ss_pred CCCceEEEeeccc--ccccHHHHHHHHHhCCCcEEEEEcCCcc------HHHHHhhhcCCCeEEEecccchhHHHHHhcC
Q 022615 89 PDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFIGDGPY------REELEKMFTGMPAVFTGMLLGEELSQAYASG 160 (294)
Q Consensus 89 ~~~~~i~~~G~~~--~~k~~~~l~~~~~~~~~~~l~i~G~~~~------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 160 (294)
+...+.+.+|... ..+.+..+..+++..+.--+..+..... .+.+.+... .+..+.+++|+.++ ++..
T Consensus 274 ~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~~-~~g~i~~W~PQ~~I---L~H~ 349 (468)
T PLN02207 274 EASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRVS-GRGMICGWSPQVEI---LAHK 349 (468)
T ss_pred CCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhcC-CCeEEEEeCCHHHH---hccc
Confidence 3456777778663 2344677778888776533333332111 122222222 35566799888775 4555
Q ss_pred CEEEeecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCCcceeec---------CCCCHHHHHHHHHHHhh
Q 022615 161 DVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLF---------NPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 161 d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~---------~~~d~~~l~~~i~~ll~ 227 (294)
.+..+-+. +.-++++||+.+|+|+|+.+.. ....++. +..+.|+-+ ..-+.+++.++|++++.
T Consensus 350 ~vg~FvTH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~--~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 350 AVGGFVSH--CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMV--KELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ccceeeec--CccccHHHHHHcCCCEEecCccccchhhHHHHH--HHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 55433332 3345789999999999997543 2222220 113344422 11267899999999996
No 150
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=97.36 E-value=0.0079 Score=52.84 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=78.6
Q ss_pred CCceEEEeeccc--ccccHHHHHHHHHhCCCcEEEEEcCC---------cc------HHHHHhhhcCCCeEEEecccchh
Q 022615 90 DKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFIGDG---------PY------REELEKMFTGMPAVFTGMLLGEE 152 (294)
Q Consensus 90 ~~~~i~~~G~~~--~~k~~~~l~~~~~~~~~~~l~i~G~~---------~~------~~~~~~~~~~~~v~~~g~~~~~~ 152 (294)
+..+.+.+|.+. ..+....+..+++..+.--+..+... .. .+.+.+.. ..+..+.+++|+.+
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~ 339 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIE 339 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHHH
Confidence 456777788763 34556778888888876333334321 10 01111112 23556778987655
Q ss_pred HHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCC-CcceeecC-----CCCHHHHHHHH
Q 022615 153 LSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQD-GKIGYLFN-----PGDLDDCLSKL 222 (294)
Q Consensus 153 ~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~-~~~g~~~~-----~~d~~~l~~~i 222 (294)
+++..++..+-+. +..++++|++.+|+|+|+.+.. .....+ .+ -+.|+-+. .-+.+++.+++
T Consensus 340 ---iL~h~~vg~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~---~~~~~~G~~~~~~~~~~~~~e~l~~av 411 (455)
T PLN02152 340 ---VLRHRAVGCFVTH--CGWSSSLESLVLGVPVVAFPMWSDQPANAKLL---EEIWKTGVRVRENSEGLVERGEIRRCL 411 (455)
T ss_pred ---HhCCcccceEEee--CCcccHHHHHHcCCCEEeccccccchHHHHHH---HHHhCceEEeecCcCCcCcHHHHHHHH
Confidence 6777777555543 3456899999999999986542 222222 11 12343332 12678999999
Q ss_pred HHHhhChH
Q 022615 223 EPLLYNQE 230 (294)
Q Consensus 223 ~~ll~~~~ 230 (294)
.+++.++.
T Consensus 412 ~~vm~~~~ 419 (455)
T PLN02152 412 EAVMEEKS 419 (455)
T ss_pred HHHHhhhH
Confidence 99997543
No 151
>PLN02764 glycosyltransferase family protein
Probab=97.34 E-value=0.0061 Score=53.42 Aligned_cols=164 Identities=13% Similarity=0.079 Sum_probs=88.9
Q ss_pred CCCCCceEEEeecccc--cccHHHHHHHHHhC-CCcEEEEEc-CC------ccHHHHHhhhcCCCeEEEecccchhHHHH
Q 022615 87 GEPDKPLIVHVGRLGV--EKSLDFLKRVMDRL-PEARIAFIG-DG------PYREELEKMFTGMPAVFTGMLLGEELSQA 156 (294)
Q Consensus 87 ~~~~~~~i~~~G~~~~--~k~~~~l~~~~~~~-~~~~l~i~G-~~------~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 156 (294)
..++..+.+.+|.... .+.+..+...++.- ..+..++-. .+ ...+.+++..+..++.+.+++|+.++
T Consensus 254 q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~v--- 330 (453)
T PLN02764 254 YEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLI--- 330 (453)
T ss_pred CCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHH---
Confidence 3445667788888733 33344444443322 123333331 11 11122333334446788899988774
Q ss_pred HhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecC-----CCCHHHHHHHHHHHhh
Q 022615 157 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN-----PGDLDDCLSKLEPLLY 227 (294)
Q Consensus 157 ~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~-----~~d~~~l~~~i~~ll~ 227 (294)
++...+..+-+ .+.-++++|++.+|+|+|+.+... ....+. +..+.|+.+. .-+.+++.+++++++.
T Consensus 331 L~h~~v~~Fvt--H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~--~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~ 406 (453)
T PLN02764 331 LSHPSVGCFVS--HCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLS--DELKVSVEVAREETGWFSKESLRDAINSVMK 406 (453)
T ss_pred hcCcccCeEEe--cCCchHHHHHHHcCCCEEeCCcccchHHHHHHHH--HHhceEEEeccccCCccCHHHHHHHHHHHhc
Confidence 55554433333 244578999999999999976532 222330 1234454432 1378999999999997
Q ss_pred Ch-HHHHHHHHHHHHH---HHh-CCHHHHHHHHHH
Q 022615 228 NQ-ELRETMGQAARQE---MEK-YDWRAATRTIRN 257 (294)
Q Consensus 228 ~~-~~~~~~~~~~~~~---~~~-~s~~~~~~~~~~ 257 (294)
++ +..+++++++++. +.+ =|.....+++++
T Consensus 407 ~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~ 441 (453)
T PLN02764 407 RDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIE 441 (453)
T ss_pred CCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 64 4445555555544 322 344445555553
No 152
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.33 E-value=0.0031 Score=55.36 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=77.7
Q ss_pred CCCceEEEeecccc--cccHHHHHHHHHhCCCcEEEEEcCC----c-----cHHHHHhhhcCCCeEEEecccchhHHHHH
Q 022615 89 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDG----P-----YREELEKMFTGMPAVFTGMLLGEELSQAY 157 (294)
Q Consensus 89 ~~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i~G~~----~-----~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 157 (294)
++..+.+.+|.... .+.+..+..+++..+.--+.++..+ . ..+.+.+... .+..+.+++|+.+ ++
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~-~~g~v~~w~PQ~~---iL 338 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIIS-GRGYIVKWAPQKE---VL 338 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhcc-CCeEEEccCCHHH---Hh
Confidence 45667778887642 3345556666776655333333321 1 1222333332 3566778988876 56
Q ss_pred hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCC-cceeec-CCCCHHHHHHHHHHHhhChH
Q 022615 158 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDG-KIGYLF-NPGDLDDCLSKLEPLLYNQE 230 (294)
Q Consensus 158 ~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~-~~g~~~-~~~d~~~l~~~i~~ll~~~~ 230 (294)
+..++..+-+. +.-++++||+++|+|+|+.+..+ ....+ .+. +.|+.+ ..-+.++++++|++++.+++
T Consensus 339 ~h~~v~~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~---~~~~~~G~~~~~~~~~~~v~~av~~lm~~~~ 412 (451)
T PLN02410 339 SHPAVGGFWSH--CGWNSTLESIGEGVPMICKPFSSDQKVNARYL---ECVWKIGIQVEGDLDRGAVERAVKRLMVEEE 412 (451)
T ss_pred CCCccCeeeec--CchhHHHHHHHcCCCEEeccccccCHHHHHHH---HHHhCeeEEeCCcccHHHHHHHHHHHHcCCc
Confidence 66555433332 33468899999999999875532 22222 111 455444 23378899999999997653
No 153
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.33 E-value=0.039 Score=49.14 Aligned_cols=131 Identities=10% Similarity=0.073 Sum_probs=74.9
Q ss_pred CCceEEEeecccc--cccHHHHHHHHHhCCCcEEEEE-cCC----------c--c-----HHHHHhhhcCCCeEEEeccc
Q 022615 90 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-GDG----------P--Y-----REELEKMFTGMPAVFTGMLL 149 (294)
Q Consensus 90 ~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i~-G~~----------~--~-----~~~~~~~~~~~~v~~~g~~~ 149 (294)
...+.+.+|.+.. .+.+..+..+++..+. +|++. +.. . . .+.+.+.. ..++.+.+++|
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~-~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~-~~~g~v~~W~P 351 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERSGH-RFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT-KDIGKVIGWAP 351 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHcCC-CeEEEEcCCcccccccccccccchhhhCChHHHHHh-ccCceEEeeCC
Confidence 3456778887632 3457777888887764 44433 210 0 0 11122222 23566678988
Q ss_pred chhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC----cc-cccccCCCCcceeecC-------------
Q 022615 150 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IP-DIIPEDQDGKIGYLFN------------- 211 (294)
Q Consensus 150 ~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~-e~~~~~~~~~~g~~~~------------- 211 (294)
+.+ +++...+..+-+ .+.-++++|++.+|+|+|+.+..+ .. ..+ +.-+.|..+.
T Consensus 352 Q~~---iL~H~~v~~Fvt--H~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v---~~~g~Gv~l~~~~~~~~~~~~~~ 423 (481)
T PLN02554 352 QVA---VLAKPAIGGFVT--HCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMV---EELGLAVEIRKYWRGDLLAGEME 423 (481)
T ss_pred HHH---HhCCcccCcccc--cCccchHHHHHHcCCCEEecCccccchhhHHHHH---HHhCceEEeeccccccccccccC
Confidence 665 454444433333 233568999999999999975432 22 122 2234454442
Q ss_pred CCCHHHHHHHHHHHhh-ChH
Q 022615 212 PGDLDDCLSKLEPLLY-NQE 230 (294)
Q Consensus 212 ~~d~~~l~~~i~~ll~-~~~ 230 (294)
.-+.+++.++|.+++. +++
T Consensus 424 ~~~~e~l~~av~~vm~~~~~ 443 (481)
T PLN02554 424 TVTAEEIERGIRCLMEQDSD 443 (481)
T ss_pred eEcHHHHHHHHHHHhcCCHH
Confidence 1268899999999996 443
No 154
>PLN03015 UDP-glucosyl transferase
Probab=97.18 E-value=0.077 Score=46.86 Aligned_cols=133 Identities=13% Similarity=0.047 Sum_probs=75.2
Q ss_pred CCCCceEEEeecccc--cccHHHHHHHHHhCCCcEEEEEcCC-----------c-----cHHHHHhhhcCCCeEEEeccc
Q 022615 88 EPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDG-----------P-----YREELEKMFTGMPAVFTGMLL 149 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i~G~~-----------~-----~~~~~~~~~~~~~v~~~g~~~ 149 (294)
.++..+.+.+|.... ......+..+++..+.--+..+... . ..+.+.+..+..++.+.+++|
T Consensus 265 ~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~P 344 (470)
T PLN03015 265 GERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAP 344 (470)
T ss_pred CCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCC
Confidence 345566777787732 3446667777777765333333210 0 112233333344577889998
Q ss_pred chhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecC------CCCHHHHH
Q 022615 150 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN------PGDLDDCL 219 (294)
Q Consensus 150 ~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~------~~d~~~l~ 219 (294)
+.++. +...+..+-+. +.-++++|++++|+|+|+.+..+ ....+. +..+.|+-+. .-+.+++.
T Consensus 345 Q~~vL---~h~~vg~fvtH--~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~--~~~gvg~~~~~~~~~~~v~~e~i~ 417 (470)
T PLN03015 345 QVEIL---SHRSIGGFLSH--CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLT--EEIGVAVRTSELPSEKVIGREEVA 417 (470)
T ss_pred HHHHh---ccCccCeEEec--CCchhHHHHHHcCCCEEecccccchHHHHHHHH--HHhCeeEEecccccCCccCHHHHH
Confidence 87754 45555443332 33468899999999999975432 111110 1123343332 13678999
Q ss_pred HHHHHHhh
Q 022615 220 SKLEPLLY 227 (294)
Q Consensus 220 ~~i~~ll~ 227 (294)
++|+.++.
T Consensus 418 ~~v~~lm~ 425 (470)
T PLN03015 418 SLVRKIVA 425 (470)
T ss_pred HHHHHHHc
Confidence 99999985
No 155
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.06 E-value=0.027 Score=50.09 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=84.7
Q ss_pred CCceEEEeeccc--ccccHHHHHHHHHhCCCcEEE-EEcCCc---------cHHHHHhhhcCCCeEEEecccchhHHHHH
Q 022615 90 DKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIA-FIGDGP---------YREELEKMFTGMPAVFTGMLLGEELSQAY 157 (294)
Q Consensus 90 ~~~~i~~~G~~~--~~k~~~~l~~~~~~~~~~~l~-i~G~~~---------~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 157 (294)
+..+.+.+|.+. ..+.+..+..+++..+. .|+ .++... ..+.+.+..+. +..+.+++|+.+ ++
T Consensus 280 ~svvyvsfGS~~~~~~~~~~ela~~l~~~~~-~flw~~~~~~~~~~~~~~~lp~~~~er~~~-rg~v~~w~PQ~~---iL 354 (475)
T PLN02167 280 SSVVFLCFGSLGSLPAPQIKEIAQALELVGC-RFLWSIRTNPAEYASPYEPLPEGFMDRVMG-RGLVCGWAPQVE---IL 354 (475)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCC-cEEEEEecCcccccchhhhCChHHHHHhcc-CeeeeccCCHHH---Hh
Confidence 445667778763 23446677777777654 444 343211 11122222222 235568887665 56
Q ss_pred hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC----Ccccc-cccCCCCcceeecC---------CCCHHHHHHHHH
Q 022615 158 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDI-IPEDQDGKIGYLFN---------PGDLDDCLSKLE 223 (294)
Q Consensus 158 ~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~-~~~~~~~~~g~~~~---------~~d~~~l~~~i~ 223 (294)
+...+..+-+. +.-++++||+++|+|+|+.+.. ..... + +.-+.|+.+. .-+.+++.++|.
T Consensus 355 ~h~~vg~fvtH--~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~---~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~ 429 (475)
T PLN02167 355 AHKAIGGFVSH--CGWNSVLESLWFGVPIATWPMYAEQQLNAFTMV---KELGLAVELRLDYVSAYGEIVKADEIAGAVR 429 (475)
T ss_pred cCcccCeEEee--CCcccHHHHHHcCCCEEeccccccchhhHHHHH---HHhCeeEEeecccccccCCcccHHHHHHHHH
Confidence 66554333322 3345788999999999987543 22211 2 2234555442 126789999999
Q ss_pred HHhhChH----HHHHHHHHHHHHHHh-CCHHHHHHHHHH
Q 022615 224 PLLYNQE----LRETMGQAARQEMEK-YDWRAATRTIRN 257 (294)
Q Consensus 224 ~ll~~~~----~~~~~~~~~~~~~~~-~s~~~~~~~~~~ 257 (294)
+++.+++ ..+++++.+++.+.+ =|.....+++++
T Consensus 430 ~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~ 468 (475)
T PLN02167 430 SLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFID 468 (475)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9997542 223344444444433 333344444443
No 156
>PLN00414 glycosyltransferase family protein
Probab=97.02 E-value=0.015 Score=51.01 Aligned_cols=149 Identities=11% Similarity=0.072 Sum_probs=84.2
Q ss_pred CCCCCceEEEeeccccc--ccHHHHHHHHHhCCCcEE--EEE---cCC----ccHHHHHhhhcCCCeEEEecccchhHHH
Q 022615 87 GEPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARI--AFI---GDG----PYREELEKMFTGMPAVFTGMLLGEELSQ 155 (294)
Q Consensus 87 ~~~~~~~i~~~G~~~~~--k~~~~l~~~~~~~~~~~l--~i~---G~~----~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 155 (294)
..++..+.+.+|..... +.+..+...++. .+..| ++. |.+ ...+.+++..+..+..+.+++|+.+
T Consensus 249 q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~-s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~--- 324 (446)
T PLN00414 249 FEPGSVVFCAFGTQFFFEKDQFQEFCLGMEL-TGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPL--- 324 (446)
T ss_pred CCCCceEEEeecccccCCHHHHHHHHHHHHH-cCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHH---
Confidence 34455677788877433 223333333332 23333 232 111 1223455555555677789998776
Q ss_pred HHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCCcceeecCC-----CCHHHHHHHHHHHh
Q 022615 156 AYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP-----GDLDDCLSKLEPLL 226 (294)
Q Consensus 156 ~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~~~-----~d~~~l~~~i~~ll 226 (294)
+++.+.+..+-+. +.-++++||+++|+|+|+.+.. ....++. +..+.|+.+.. -+.+++.+++++++
T Consensus 325 vL~h~~v~~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~--~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m 400 (446)
T PLN00414 325 ILSHPSVGCFVNH--CGFGSMWESLVSDCQIVFIPQLADQVLITRLLT--EELEVSVKVQREDSGWFSKESLRDTVKSVM 400 (446)
T ss_pred HhcCCccceEEec--CchhHHHHHHHcCCCEEecCcccchHHHHHHHH--HHhCeEEEeccccCCccCHHHHHHHHHHHh
Confidence 4556644333332 3457899999999999987543 2222330 12355555531 37889999999999
Q ss_pred hCh-HHHHHHHHHHHHHH
Q 022615 227 YNQ-ELRETMGQAARQEM 243 (294)
Q Consensus 227 ~~~-~~~~~~~~~~~~~~ 243 (294)
.++ +..+++++++++.-
T Consensus 401 ~~~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 401 DKDSEIGNLVKRNHKKLK 418 (446)
T ss_pred cCChhhHHHHHHHHHHHH
Confidence 764 34555666665543
No 157
>PLN02534 UDP-glycosyltransferase
Probab=96.82 E-value=0.079 Score=47.17 Aligned_cols=132 Identities=16% Similarity=0.120 Sum_probs=75.0
Q ss_pred CCCceEEEeecccc--cccHHHHHHHHHhCCCcEEEEEcCC---cc------HHHHHhhhcCCCeEEEecccchhHHHHH
Q 022615 89 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDG---PY------REELEKMFTGMPAVFTGMLLGEELSQAY 157 (294)
Q Consensus 89 ~~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i~G~~---~~------~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 157 (294)
+...+.+.+|.... .+....+..+++..+.--+..+... .. .+.+.+.....++.+.+++|+.+ ++
T Consensus 282 ~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~---iL 358 (491)
T PLN02534 282 PRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVL---IL 358 (491)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHH---Hh
Confidence 34567777787632 2334555577777755333333321 10 12223333445788889998754 67
Q ss_pred hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecC---------------CCCHHHH
Q 022615 158 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN---------------PGDLDDC 218 (294)
Q Consensus 158 ~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~---------------~~d~~~l 218 (294)
...++..+-+ .+..++++||+++|+|+|+.+... ....+. +.-+.|+-+. .-+.+++
T Consensus 359 ~h~~v~~fvt--H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~--e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev 434 (491)
T PLN02534 359 SHPAIGGFLT--HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIV--EVLRIGVRVGVEVPVRWGDEERVGVLVKKDEV 434 (491)
T ss_pred cCCccceEEe--cCccHHHHHHHHcCCCEEeccccccHHHHHHHHH--HhhcceEEecccccccccccccccCccCHHHH
Confidence 7777754443 244678999999999999875531 111110 1112222110 1267899
Q ss_pred HHHHHHHhh
Q 022615 219 LSKLEPLLY 227 (294)
Q Consensus 219 ~~~i~~ll~ 227 (294)
++++++++.
T Consensus 435 ~~~v~~~m~ 443 (491)
T PLN02534 435 EKAVKTLMD 443 (491)
T ss_pred HHHHHHHhc
Confidence 999999986
No 158
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.13 Score=44.30 Aligned_cols=222 Identities=10% Similarity=0.101 Sum_probs=120.4
Q ss_pred HHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHH-HHhh-cCCCCCceEEEeecccccc---
Q 022615 30 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMR-WRLS-NGEPDKPLIVHVGRLGVEK--- 104 (294)
Q Consensus 30 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~~~G~~~~~k--- 104 (294)
...+.|.+++.+......+.+.++...+++.....+-....+.......... .+.. ..+.++.+|+|+-.+++..
T Consensus 145 ~~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~ 224 (388)
T COG1887 145 VRNHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDKKVILYAPTFRDNDVLI 224 (388)
T ss_pred eeeeeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHHHhhhcCCcccCceEEecCCccCCcccc
Confidence 3456788899888888888888887766666555544333333322222211 1222 2334678899999887765
Q ss_pred c---HHHH--HHHH-HhCC--CcEEEEEcCCccHHHHHhhhcCCCeEEEeccc-chhHHHHHhcCCEEEeecCCCCcchH
Q 022615 105 S---LDFL--KRVM-DRLP--EARIAFIGDGPYREELEKMFTGMPAVFTGMLL-GEELSQAYASGDVFVMPSESETLGLV 175 (294)
Q Consensus 105 ~---~~~l--~~~~-~~~~--~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~ad~~l~ps~~e~~~~~ 175 (294)
+ .... +..+ +.+. +..+++--................ +.-.++ ..++.++|..+|++|.- ++..
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~~~~ii~k~Hp~is~~~~~~~~~~~--~~~~vs~~~di~dll~~sDiLITD-----ySSv 297 (388)
T COG1887 225 GTQFFNLDIDIEKLKEKLGENEYVIIVKPHPLISDKIDKRYALDD--FVLDVSDNADINDLLLVSDILITD-----YSSV 297 (388)
T ss_pred chhhhhhhhhHHHHHHhhccCCeEEEEecChhhhhhhhhhhhccc--eeEecccchhHHHHHhhhCEEEee-----chHH
Confidence 2 2222 2222 2232 344444332211111111111111 122222 48999999999999854 3788
Q ss_pred HHHHHhcCCCEEeec--CCC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHH
Q 022615 176 VLEAMSSGIPVVGVR--AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRA 250 (294)
Q Consensus 176 ~~Ea~a~G~pvI~~~--~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~ 250 (294)
++|+|...+|||-.- ... .+.+..+.+....|-++. +..++.++|.....+.+...+........+..+.-..
T Consensus 298 ~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~--~~~~li~ai~~~~~~~~~~~~k~~~~~~~~~~~~dg~ 375 (388)
T COG1887 298 IFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE--TQEELIDAIKPYDEDGNYDLEKLRVFNDKFNSYEDGR 375 (388)
T ss_pred HHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc--cHHHHHHHHHhhhcccchhHHHHHHHHHhhccccccc
Confidence 999999999999752 211 122221112344555555 7889999998887754433332332333333333345
Q ss_pred HHHHHHHHHH
Q 022615 251 ATRTIRNEQY 260 (294)
Q Consensus 251 ~~~~~~~~l~ 260 (294)
..+++.+.++
T Consensus 376 ss~ri~~~i~ 385 (388)
T COG1887 376 SSERILKLIF 385 (388)
T ss_pred HHHHHHHHHh
Confidence 5555554433
No 159
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.77 E-value=0.081 Score=43.50 Aligned_cols=140 Identities=22% Similarity=0.227 Sum_probs=81.9
Q ss_pred HHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccH--HH
Q 022615 31 HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSL--DF 108 (294)
Q Consensus 31 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~--~~ 108 (294)
-.+.|.++......+..+....-..+.++ |.+......... ..-+..+++..|.-.+.|.+ +.
T Consensus 77 ~~~~D~vi~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~----------~~~~~~i~i~~~~~~~~k~w~~~~ 141 (279)
T cd03789 77 RRRYDLAIDLQGSLRSALLPFLAGAPRRI-----GFDGERRRGLLT----------DVVKPVVVLPPGASGPAKRWPAER 141 (279)
T ss_pred hcCCCEEEECCCccHHHHHHHHhCCCeEE-----EecCCccccccc----------cccCCEEEECCCCCCccccCCHHH
Confidence 44799999988777755533332111122 111111000000 01134566667766555543 45
Q ss_pred HHHHHHhC--CCcEEEEEcCCccHHHHHhhhcC---CC-eEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhc
Q 022615 109 LKRVMDRL--PEARIAFIGDGPYREELEKMFTG---MP-AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 182 (294)
Q Consensus 109 l~~~~~~~--~~~~l~i~G~~~~~~~~~~~~~~---~~-v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~ 182 (294)
+.++++.+ .+++++++|...+.+..++.... .+ +.+.|..+-.++..+++.||++|.+. +..+--|.+.
T Consensus 142 ~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~D-----sg~~HlA~a~ 216 (279)
T cd03789 142 FAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTND-----SGPMHLAAAL 216 (279)
T ss_pred HHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeC-----CHHHHHHHHc
Confidence 55555544 26889999977666555554432 22 44667766799999999999999775 2334445799
Q ss_pred CCCEEeec
Q 022615 183 GIPVVGVR 190 (294)
Q Consensus 183 G~pvI~~~ 190 (294)
|+|+|+--
T Consensus 217 ~~p~i~l~ 224 (279)
T cd03789 217 GTPTVALF 224 (279)
T ss_pred CCCEEEEE
Confidence 99998753
No 160
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=96.73 E-value=0.0085 Score=52.83 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=96.4
Q ss_pred eEEEeecc-cccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC-CC
Q 022615 93 LIVHVGRL-GVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SE 170 (294)
Q Consensus 93 ~i~~~G~~-~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~-~e 170 (294)
..+..|.- ...++-+..++++.+.-+++-.+.+.......+.. -|.-+|.++.+|+..+++.+.++|-... .|
T Consensus 279 ~AlVyGK~~~~w~~k~~~l~~l~~~~eih~tV~~~~~~~~~~P~-----~V~NHG~l~~~ef~~lL~~akvfiGlGfP~E 353 (559)
T PF15024_consen 279 QALVYGKERYMWKGKEKYLDVLHKYMEIHGTVYDEPQRPPNVPS-----FVKNHGILSGDEFQQLLRKAKVFIGLGFPYE 353 (559)
T ss_pred eeEEEccchhhhcCcHHHHHHHHhhcEEEEEeccCCCCCcccch-----hhhhcCcCCHHHHHHHHHhhhEeeecCCCCC
Confidence 33444433 33567777788887765555555543321111111 2566899999999999999999996543 33
Q ss_pred CcchHHHHHHhcCCCEEeecCCC-----cccccc----------c------CCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 171 TLGLVVLEAMSSGIPVVGVRAGG-----IPDIIP----------E------DQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~~~~-----~~e~~~----------~------~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
|-+.+||+|.|+|.|-..... ..+++. + ....-..+.++.+|.+++.++|++++.++
T Consensus 354 --gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 354 --GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVKAILATP 431 (559)
T ss_pred --CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcC
Confidence 556899999999998764321 111121 0 01223456677889999999999998764
Q ss_pred HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Q 022615 230 ELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 230 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~~ 261 (294)
- .-++ -+|+-+-+.+++. .+.+
T Consensus 432 v---------~Py~P~efT~egmLeRv~-~~ie 454 (559)
T PF15024_consen 432 V---------EPYLPYEFTCEGMLERVN-ALIE 454 (559)
T ss_pred C---------CCcCCcccCHHHHHHHHH-HHHH
Confidence 2 1233 4688888888885 4443
No 161
>PRK14986 glycogen phosphorylase; Provisional
Probab=96.65 E-value=0.012 Score=54.60 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=85.9
Q ss_pred CCCCCceEEEeecccccccHHH-HHHHHHhC------C-----CcEEEEEcCC-c---cHHHHHhhh----c---C----
Q 022615 87 GEPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDG-P---YREELEKMF----T---G---- 139 (294)
Q Consensus 87 ~~~~~~~i~~~G~~~~~k~~~~-l~~~~~~~------~-----~~~l~i~G~~-~---~~~~~~~~~----~---~---- 139 (294)
..++.+.++++-|+..+|...+ ++..+..+ | ..++++.|.. | ..+.+.+++ + .
T Consensus 539 ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v 618 (815)
T PRK14986 539 VNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQI 618 (815)
T ss_pred cCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhh
Confidence 3456677888999999998776 54443222 2 3677777742 1 112222221 1 1
Q ss_pred ---CCeEEEecccchhHHHHHhcCCEEEeecC--CCCcchHHHHHHhcCCCEEeecCCCcccccccCCC--CcceeecC
Q 022615 140 ---MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFN 211 (294)
Q Consensus 140 ---~~v~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~--~~~g~~~~ 211 (294)
.+|.|+....-.--..++..||+....|. .|+.|++-+-+|..|.+.+++-.|...|+. +. +.+|+++-
T Consensus 619 ~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~---e~vG~eN~~~fG 694 (815)
T PRK14986 619 GDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEML---EHVGEENIFIFG 694 (815)
T ss_pred cCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHH---HhcCCCcEEEeC
Confidence 14777777655667789999999998765 789999999999999999999999888888 43 67888774
No 162
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=96.61 E-value=0.053 Score=44.33 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=62.3
Q ss_pred CCCceEEEeeccccc----------c-cHHHHHHHHHhCCCcEEEEEcCC-----ccHHHHHhhhcCCCeEEEecccchh
Q 022615 89 PDKPLIVHVGRLGVE----------K-SLDFLKRVMDRLPEARIAFIGDG-----PYREELEKMFTGMPAVFTGMLLGEE 152 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~----------k-~~~~l~~~~~~~~~~~l~i~G~~-----~~~~~~~~~~~~~~v~~~g~~~~~~ 152 (294)
.++..|+++.....+ . ..+.+.++++..|+.+++|--.. .....+.+.....++.+.. +.-.
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 192 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIID--DDVN 192 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEEC--CCCC
Confidence 455667777766443 1 23344445566688887765422 2223344443334444443 3368
Q ss_pred HHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC
Q 022615 153 LSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 153 ~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
+.+++..||.++.-+ +++-+||+.+|+||++...+
T Consensus 193 ~~~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 193 LYELLEQSDAVVTIN-----STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred HHHHHHhCCEEEEEC-----CHHHHHHHHcCCceEEecCc
Confidence 899999999998776 78899999999999986443
No 163
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=96.59 E-value=0.014 Score=53.30 Aligned_cols=123 Identities=18% Similarity=0.211 Sum_probs=74.6
Q ss_pred CCCCceEEEeecccccccHHH-HHHHH------HhCC-----CcEEEEEcCC-c---cHHHHHhhh-------cC-C---
Q 022615 88 EPDKPLIVHVGRLGVEKSLDF-LKRVM------DRLP-----EARIAFIGDG-P---YREELEKMF-------TG-M--- 140 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~k~~~~-l~~~~------~~~~-----~~~l~i~G~~-~---~~~~~~~~~-------~~-~--- 140 (294)
.++....+++-|+..+|...+ ++..+ ...| .+++++.|.. | ..+.+.+++ +. .
T Consensus 441 dp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~ 520 (713)
T PF00343_consen 441 DPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVG 520 (713)
T ss_dssp -TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTC
T ss_pred CcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhc
Confidence 456677889999999998766 33322 2223 3678888852 1 112222222 11 1
Q ss_pred ---CeEEEecccchhHHHHHhcCCEEEeecC--CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecC
Q 022615 141 ---PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFN 211 (294)
Q Consensus 141 ---~v~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~ 211 (294)
+|.|+...+-.--..++..+|+.+..+. .|+.|++-+-++..|.+.+++-.|..-|+.... ...++++|-
T Consensus 521 ~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~v-G~eN~fiFG 595 (713)
T PF00343_consen 521 DRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAV-GEENIFIFG 595 (713)
T ss_dssp CGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH--GGGSEEES
T ss_pred cceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhc-CCCcEEEcC
Confidence 4777777666677789999999998765 799999999999999999999999888876221 134555553
No 164
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.58 E-value=0.02 Score=48.38 Aligned_cols=95 Identities=14% Similarity=0.143 Sum_probs=64.2
Q ss_pred CCceEEEeec-ccccccH--HHHHHHHHhC--CCcEEEEEcCCccHHHHHhhhcCC--C-eEEEecccchhHHHHHhcCC
Q 022615 90 DKPLIVHVGR-LGVEKSL--DFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM--P-AVFTGMLLGEELSQAYASGD 161 (294)
Q Consensus 90 ~~~~i~~~G~-~~~~k~~--~~l~~~~~~~--~~~~l~i~G~~~~~~~~~~~~~~~--~-v~~~g~~~~~~~~~~~~~ad 161 (294)
+..+++..|. .++.|.+ +.+.++++.+ .+.+++++|...+.+..++..... + +.+.|..+-.++..+++.||
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~ 253 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAK 253 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCC
Confidence 4456667766 3466653 3555555444 368899999876665555443322 2 34667777799999999999
Q ss_pred EEEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 162 VFVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 162 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
++|... +..+-=|.|.|+|+|+-
T Consensus 254 l~I~~D-----SGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 254 AVVTND-----SGLMHVAAALNRPLVAL 276 (334)
T ss_pred EEEeeC-----CHHHHHHHHcCCCEEEE
Confidence 999765 33444588999999974
No 165
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=96.57 E-value=0.018 Score=46.33 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=60.0
Q ss_pred CCCceEEEeecccccccH--HHHHHHHHhCC--CcEEEEEcCCcc--HHHHHhhhcCC---CeEEEecccchhHHHHHhc
Q 022615 89 PDKPLIVHVGRLGVEKSL--DFLKRVMDRLP--EARIAFIGDGPY--REELEKMFTGM---PAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~k~~--~~l~~~~~~~~--~~~l~i~G~~~~--~~~~~~~~~~~---~v~~~g~~~~~~~~~~~~~ 159 (294)
++..+++..|.-.+.|.+ +.+.++++.+. ...++++|...+ .+......... .+.+.|..+-.++..+++.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 455677888877777764 34666666653 267888887766 33333343332 4777788777999999999
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
||++|.+- +..+-=|.|.|+|+|+-
T Consensus 184 a~~~I~~D-----tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 184 ADLVIGND-----TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp SSEEEEES-----SHHHHHHHHTT--EEEE
T ss_pred CCEEEecC-----ChHHHHHHHHhCCEEEE
Confidence 99999875 34455589999999985
No 166
>PLN02555 limonoid glucosyltransferase
Probab=96.54 E-value=0.12 Score=46.04 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=77.0
Q ss_pred CCceEEEeeccc--ccccHHHHHHHHHhCCCcEEEEE-cCC-----c----cHHHHHhhhcCCCeEEEecccchhHHHHH
Q 022615 90 DKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFI-GDG-----P----YREELEKMFTGMPAVFTGMLLGEELSQAY 157 (294)
Q Consensus 90 ~~~~i~~~G~~~--~~k~~~~l~~~~~~~~~~~l~i~-G~~-----~----~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 157 (294)
...+.+.+|.+. ..+.+..+..+++..+. .|+++ ... . ..+.+.+.. ..++.+.+++|+.+ ++
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~-~flW~~~~~~~~~~~~~~~lp~~~~~~~-~~~g~v~~W~PQ~~---iL 351 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGV-SFLWVMRPPHKDSGVEPHVLPEEFLEKA-GDKGKIVQWCPQEK---VL 351 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCC-eEEEEEecCcccccchhhcCChhhhhhc-CCceEEEecCCHHH---Hh
Confidence 345677778753 23345666667766543 55543 311 0 111122211 23567778987765 45
Q ss_pred hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCC-cceeecC-------CCCHHHHHHHHHHH
Q 022615 158 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDG-KIGYLFN-------PGDLDDCLSKLEPL 225 (294)
Q Consensus 158 ~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~-~~g~~~~-------~~d~~~l~~~i~~l 225 (294)
+...+..+-+. +.-++++||+.+|+|+|+.+.. ....++ .+. +.|+.+. .-+.+++.++++++
T Consensus 352 ~H~~v~~FvtH--~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~---~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~v 426 (480)
T PLN02555 352 AHPSVACFVTH--CGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL---VDVFKTGVRLCRGEAENKLITREEVAECLLEA 426 (480)
T ss_pred CCCccCeEEec--CCcchHHHHHHcCCCEEeCCCccccHHHHHHH---HHHhCceEEccCCccccCcCcHHHHHHHHHHH
Confidence 44333333332 3356899999999999987543 222222 122 4554441 12578999999999
Q ss_pred hhChHHHHHHHHHHHH
Q 022615 226 LYNQELRETMGQAARQ 241 (294)
Q Consensus 226 l~~~~~~~~~~~~~~~ 241 (294)
+.+++ -+++++++++
T Consensus 427 m~~~~-g~~~r~ra~~ 441 (480)
T PLN02555 427 TVGEK-AAELKQNALK 441 (480)
T ss_pred hcCch-HHHHHHHHHH
Confidence 97543 2344444443
No 167
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.089 Score=48.80 Aligned_cols=169 Identities=20% Similarity=0.193 Sum_probs=112.3
Q ss_pred ceEEeeccccCCCCCCCccch---HHHHHhhcCCCCCceEEEeecccccccHHHHHHHH----HhCC----CcEEEEEcC
Q 022615 58 KIRIWKKGVDSESFHPRFRSS---EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVM----DRLP----EARIAFIGD 126 (294)
Q Consensus 58 ~i~~i~~gvd~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~----~~~~----~~~l~i~G~ 126 (294)
.+..+|-|+|...+....... ...........++.+++..-++...||...=+.++ .++| ++.++.+..
T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~ 319 (732)
T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPFKGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIEN 319 (732)
T ss_pred eeeecccccchHHhhccccchhHHHHHHHHhhhccCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEec
Confidence 455677888877665433222 22222223334677888888898888865444444 3444 344444432
Q ss_pred -----CccHHHHHhhh----cCC----------C-eEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcC---
Q 022615 127 -----GPYREELEKMF----TGM----------P-AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG--- 183 (294)
Q Consensus 127 -----~~~~~~~~~~~----~~~----------~-v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G--- 183 (294)
+...+.++... ... . ..+...++..++.+++.-+|+.+..+..+|..+..+|+.+|.
T Consensus 320 ~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~ 399 (732)
T KOG1050|consen 320 PKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENK 399 (732)
T ss_pred CCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhccc
Confidence 22111222211 111 1 346677888999999999999999999999999999999885
Q ss_pred -CCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHH
Q 022615 184 -IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 231 (294)
Q Consensus 184 -~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~ 231 (294)
.+.|.+...|..+.. +....++.+.+.++++..|..++...+.
T Consensus 400 ~~~lVlsef~G~~~tl-----~d~aivvnpw~~~~~~~~i~~al~~s~~ 443 (732)
T KOG1050|consen 400 KSVLVLSEFIGDDTTL-----EDAAIVVNPWDGDEFAILISKALTMSDE 443 (732)
T ss_pred CCceEEeeeccccccc-----cccCEEECCcchHHHHHHHHHHhhcCHH
Confidence 677877777777666 4556788888999999999999986553
No 168
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.42 E-value=0.086 Score=44.26 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=61.9
Q ss_pred CCceEEEeecccccccH--HHHHHHHHhC--CCcEEEEEcCCc-cHHHHHhhhcCC-CeEEEecccchhHHHHHhcCCEE
Q 022615 90 DKPLIVHVGRLGVEKSL--DFLKRVMDRL--PEARIAFIGDGP-YREELEKMFTGM-PAVFTGMLLGEELSQAYASGDVF 163 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~--~~l~~~~~~~--~~~~l~i~G~~~-~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~ 163 (294)
+..+++..|.-.+.|.+ +.+.++++.+ .+.+++++|.++ +.+..++..... +..+.|..+-.++..+++.||++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l~ 258 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADAV 258 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCEE
Confidence 45567777765566654 4555555544 257888774443 334444433322 34567877779999999999999
Q ss_pred EeecCCCCcchHHHHHHhcCCCEEee
Q 022615 164 VMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 164 l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
|... +..+-=|.|.|+|+|+-
T Consensus 259 I~~D-----Sgp~HlAaa~g~P~i~l 279 (319)
T TIGR02193 259 VGVD-----TGLTHLAAALDKPTVTL 279 (319)
T ss_pred EeCC-----ChHHHHHHHcCCCEEEE
Confidence 9765 33444578999999974
No 169
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.37 E-value=0.019 Score=53.35 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=84.7
Q ss_pred CCCCceEEEeecccccccHHH-HHHHHHh------CCC-----cEEEEEcCC-c---cHHHHHhhhc-------C-----
Q 022615 88 EPDKPLIVHVGRLGVEKSLDF-LKRVMDR------LPE-----ARIAFIGDG-P---YREELEKMFT-------G----- 139 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~k~~~~-l~~~~~~------~~~-----~~l~i~G~~-~---~~~~~~~~~~-------~----- 139 (294)
.++.+..+++-|+..+|...+ ++..+.. .|+ .++++.|.. | ..+.+.+++. .
T Consensus 527 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 606 (797)
T cd04300 527 DPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVG 606 (797)
T ss_pred CCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcC
Confidence 567778899999999998776 5544322 232 667777742 1 1122222211 1
Q ss_pred --CCeEEEecccchhHHHHHhcCCEEEeecC--CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecC
Q 022615 140 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFN 211 (294)
Q Consensus 140 --~~v~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~ 211 (294)
.+|.|+....-.--..++..||+....|. .|+.|++-+-+|..|.+.+++-.|...|+.... .+.++++|-
T Consensus 607 ~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~v-G~eN~fiFG 681 (797)
T cd04300 607 DKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEV-GEENIFIFG 681 (797)
T ss_pred CceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHh-CcCcEEEeC
Confidence 13777776655667789999999998765 689999999999999999999988888887221 156777663
No 170
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=96.27 E-value=0.012 Score=54.41 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=83.6
Q ss_pred CCCCceEEEeecccccccHHH-HHHHHH------hCCC-----cEEEEEcCC-c---cHHHHHhhhc-------C-----
Q 022615 88 EPDKPLIVHVGRLGVEKSLDF-LKRVMD------RLPE-----ARIAFIGDG-P---YREELEKMFT-------G----- 139 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~k~~~~-l~~~~~------~~~~-----~~l~i~G~~-~---~~~~~~~~~~-------~----- 139 (294)
.++.+.++++-|+..+|...+ ++..+. ..|+ .++++.|.. | ..+.+.+++. +
T Consensus 526 dp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 605 (798)
T PRK14985 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVG 605 (798)
T ss_pred CchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhC
Confidence 456667788889999998766 544332 2232 677777742 1 1122222221 1
Q ss_pred --CCeEEEecccchhHHHHHhcCCEEEeecC--CCCcchHHHHHHhcCCCEEeecCCCcccccccCCC--CcceeecC
Q 022615 140 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFN 211 (294)
Q Consensus 140 --~~v~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~--~~~g~~~~ 211 (294)
.+|.|+....-.--..++..||+....|. .|+.|++-+-+|..|.+.+++-.|...|+. +. +.+|++|-
T Consensus 606 ~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~---e~vG~eN~f~fG 680 (798)
T PRK14985 606 DKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIA---EQVGEENIFIFG 680 (798)
T ss_pred CceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHH---HHhCcCcEEEeC
Confidence 14777777666677789999999998765 789999999999999999999888888877 32 56777763
No 171
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=96.16 E-value=0.0079 Score=45.74 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=40.4
Q ss_pred ccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeecccc
Q 022615 19 LVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVD 67 (294)
Q Consensus 19 ~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd 67 (294)
.++.++.-|+.+.+.+|.+|+-|+.+.+++.+.++ ..+..+||+|.|
T Consensus 139 ~k~~lk~~E~~avk~ad~lIaDs~~I~~y~~~~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 139 AKKYLKFSEKLAVKYADRLIADSKGIQDYIKERYG--RKKSTFIAYGAD 185 (185)
T ss_pred HHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHHcC--CCCcEEecCCCC
Confidence 44556677999999999999999999999999986 347899999976
No 172
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.15 E-value=0.16 Score=42.71 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=60.6
Q ss_pred CceEEEeecccccccH--HHHHHHHHhC--CCcEEEEE-cCCccHHHHHhhhcCC-CeEEEecccchhHHHHHhcCCEEE
Q 022615 91 KPLIVHVGRLGVEKSL--DFLKRVMDRL--PEARIAFI-GDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYASGDVFV 164 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~--~~l~~~~~~~--~~~~l~i~-G~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~l 164 (294)
+.+++..|.-...|.+ +.+.++++.+ .+.++++. |...+.+..++..... ++.+.|..+-.++..+++.||++|
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~I 258 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAVV 258 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEEE
Confidence 3444455544444543 3555555544 35777776 6444444444444332 366778887899999999999999
Q ss_pred eecCCCCcchHHHHHHhcCCCEEee
Q 022615 165 MPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
... +..+-=|.|+|+|+|+-
T Consensus 259 ~nD-----SGp~HlA~A~g~p~val 278 (322)
T PRK10964 259 SVD-----TGLSHLTAALDRPNITL 278 (322)
T ss_pred ecC-----CcHHHHHHHhCCCEEEE
Confidence 765 34455589999999985
No 173
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=96.04 E-value=0.52 Score=38.01 Aligned_cols=194 Identities=14% Similarity=0.117 Sum_probs=95.1
Q ss_pred HHHHhCCeEEecchhhH--HHHH-HhccC---CcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceE---EEeec
Q 022615 29 FLHRAADLTLVPSVAIG--KDLE-AARVT---AANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLI---VHVGR 99 (294)
Q Consensus 29 ~~~~~ad~ii~~s~~~~--~~~~-~~~~~---~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~G~ 99 (294)
-+++.+|.|++.|...- +.+. ..++. .-+++..+|.....+ +...-...+...- ...+.+.. +|+|+
T Consensus 116 ~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~p~v~nfq---pp~~i~~~Rstyw-kd~se~nmnv~~yigR 191 (355)
T PF11440_consen 116 GTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKFPMVFNFQ---PPMDINKYRSTYW-KDVSEKNMNVNRYIGR 191 (355)
T ss_dssp HHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS-------EEE-------B-HHHHHHHH----GGGSEEEEEEEE--
T ss_pred HHHHhhcEEEeccccchHHHHHHHhhccccCchhhhhhhcceeeecC---CcccHHHHHHHHh-hhhHhhhcccceeeee
Confidence 45689999999875432 2222 33321 124555555554432 2222222232221 22233444 79999
Q ss_pred ccccccHHHHHHHHHhC---CCcEEEEEcCCccHHHH--Hhh------h---------cCC--CeEEEecccchhHHHHH
Q 022615 100 LGVEKSLDFLKRVMDRL---PEARIAFIGDGPYREEL--EKM------F---------TGM--PAVFTGMLLGEELSQAY 157 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~---~~~~l~i~G~~~~~~~~--~~~------~---------~~~--~v~~~g~~~~~~~~~~~ 157 (294)
....||+..+++.-... ++++-++-|-......+ .+. . -.. .+.++|..-++|+.+.|
T Consensus 192 ~Tt~kG~~~mfD~h~~~lK~~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~M 271 (355)
T PF11440_consen 192 QTTWKGPRRMFDLHEKILKPAGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERM 271 (355)
T ss_dssp SSGGG-HHHHHHHHHHTTTTTT-EEEEE---SSTHHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHH
T ss_pred eeeecCcHHHhhhHHHhcCCcchhHHhhhhhcCCceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHH
Confidence 99999999999877655 46777787832211111 111 0 011 27788888889999999
Q ss_pred hcCCEEEeecC------CCCcchHHHHHHhcCC-CEEeecCCCc-------ccccccCCCCcceeecCCCCHHHHHHHHH
Q 022615 158 ASGDVFVMPSE------SETLGLVVLEAMSSGI-PVVGVRAGGI-------PDIIPEDQDGKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 158 ~~ad~~l~ps~------~e~~~~~~~Ea~a~G~-pvI~~~~~~~-------~e~~~~~~~~~~g~~~~~~d~~~l~~~i~ 223 (294)
+.+-+...-+. .+.+-.+-+|..|||. ||.-...|.. ..++ ......+.++..|.++-.++|.
T Consensus 272 aks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~---~~~~~~I~~De~dle~T~ekl~ 348 (355)
T PF11440_consen 272 AKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYI---DHPYSAIYFDENDLESTVEKLI 348 (355)
T ss_dssp HTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGG---SS--S-EEE-TTSHHHHHHHHH
T ss_pred hhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceee---ccCcceeEeccchHHHHHHHHH
Confidence 99988876543 2356778899999995 4544333322 2233 3345566788889999888888
Q ss_pred HHhhCh
Q 022615 224 PLLYNQ 229 (294)
Q Consensus 224 ~ll~~~ 229 (294)
++.+++
T Consensus 349 E~a~~~ 354 (355)
T PF11440_consen 349 EVANNR 354 (355)
T ss_dssp HHHT-H
T ss_pred HHhccC
Confidence 876553
No 174
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=95.98 E-value=0.022 Score=52.73 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=84.0
Q ss_pred CCCCceEEEeecccccccHHH-HHHHHHhC------C-----CcEEEEEcCC-c---cHHHHHhhhc-------C-----
Q 022615 88 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDG-P---YREELEKMFT-------G----- 139 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~k~~~~-l~~~~~~~------~-----~~~l~i~G~~-~---~~~~~~~~~~-------~----- 139 (294)
.++.+..+++-|+..+|...+ ++..+..+ | ..++++.|.. | ..+.+.+++. +
T Consensus 524 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~ 603 (794)
T TIGR02093 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVG 603 (794)
T ss_pred CccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhC
Confidence 456667788889999998776 55543322 3 3477777742 1 1122222221 1
Q ss_pred --CCeEEEecccchhHHHHHhcCCEEEeecC--CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecC
Q 022615 140 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFN 211 (294)
Q Consensus 140 --~~v~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~ 211 (294)
.+|.|+....-.--..++..||+....|. .|+.|++-+-+|..|.+.|++-.|...|+.... .+.++++|-
T Consensus 604 ~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~v-G~eN~fiFG 678 (794)
T TIGR02093 604 DKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEV-GAENIFIFG 678 (794)
T ss_pred CceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHh-CcccEEEcC
Confidence 14777777655677789999999998765 689999999999999999999888888887221 155777663
No 175
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=95.93 E-value=0.13 Score=46.10 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=82.7
Q ss_pred CceEEEeeccc-----ccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhc---CCCeEEEecccchhHHHHHhcCCE
Q 022615 91 KPLIVHVGRLG-----VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT---GMPAVFTGMLLGEELSQAYASGDV 162 (294)
Q Consensus 91 ~~~i~~~G~~~-----~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~---~~~v~~~g~~~~~~~~~~~~~ad~ 162 (294)
..+++.+|... +.+....+..+++..+++.|+..=.+.....+.+... ..+|...+++|+.++. +....+
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~ll--l~H~~v 355 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLL--LDHPAV 355 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHh--cCCCcC
Confidence 56666677764 3445677888888887887666544332222222222 3468888999998877 333333
Q ss_pred EEeecCCCCcchHHHHHHhcCCCEEeecC----CCcccccccCCCCcceeecCC-CCHHHHHHHHHHHhhChHHHHHHHH
Q 022615 163 FVMPSESETLGLVVLEAMSSGIPVVGVRA----GGIPDIIPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQ 237 (294)
Q Consensus 163 ~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~----~~~~e~~~~~~~~~~g~~~~~-~d~~~l~~~i~~ll~~~~~~~~~~~ 237 (294)
..+-+ ..|++ +++|++.+|+|+|+.+. ......+. +.+..++.... -+...+.+++..++.+++..+...+
T Consensus 356 ~~FvT-HgG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~--~~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~ 431 (496)
T KOG1192|consen 356 GGFVT-HGGWN-STLESIYSGVPMVCVPLFGDQPLNARLLV--RHGGGGVLDKRDLVSEELLEAIKEILENEEYKEAAKR 431 (496)
T ss_pred cEEEE-CCccc-HHHHHHhcCCceecCCccccchhHHHHHH--hCCCEEEEehhhcCcHHHHHHHHHHHcChHHHHHHHH
Confidence 33333 23343 45999999999996432 23333331 33444443322 1223378888888877765444443
Q ss_pred HHH
Q 022615 238 AAR 240 (294)
Q Consensus 238 ~~~ 240 (294)
-+.
T Consensus 432 l~~ 434 (496)
T KOG1192|consen 432 LSE 434 (496)
T ss_pred HHH
Confidence 333
No 176
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.72 E-value=0.28 Score=41.83 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=63.2
Q ss_pred CCCceEEEeecccccccH--HHHHHHHHhC--CCcEEEEEcCCcc--HHHHHhhhc---CC-CeEEEecccchhHHHHHh
Q 022615 89 PDKPLIVHVGRLGVEKSL--DFLKRVMDRL--PEARIAFIGDGPY--REELEKMFT---GM-PAVFTGMLLGEELSQAYA 158 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~k~~--~~l~~~~~~~--~~~~l~i~G~~~~--~~~~~~~~~---~~-~v~~~g~~~~~~~~~~~~ 158 (294)
++..+++..|.-.+.|.+ +.+.++++.+ .+.+++++|...+ .+..++... .. .+.+.|..+-.++..+++
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 345677788876566653 3455555444 3678888875432 222233332 22 255778887899999999
Q ss_pred cCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 159 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 159 ~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
.||++|... +..+-=|.|.|+|+|+--
T Consensus 262 ~a~l~v~nD-----SGp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 262 HAQLFIGVD-----SAPAHIAAAVNTPLICLF 288 (352)
T ss_pred hCCEEEecC-----CHHHHHHHHcCCCEEEEE
Confidence 999999765 334555889999999753
No 177
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.68 E-value=0.1 Score=46.69 Aligned_cols=176 Identities=13% Similarity=0.191 Sum_probs=110.0
Q ss_pred CCCCceEEEeecccc--cccHHHHHHHHHhCCCcEEEEE-----cCCccHHHHHhhhcCC-CeEEEecccchhHHHHHhc
Q 022615 88 EPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-----GDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i~-----G~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ 159 (294)
+++.++++.+..+-. .+-+....+.+++.|+-.|.+. |....+...+++.-+. +|.|..-...+|-..-.+-
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~L 835 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQL 835 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhh
Confidence 344444555554421 2345666778888898665554 4433334444443333 5888888888888888999
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccC---CCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHH
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED---QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 236 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~---~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~ 236 (294)
+|+.+-.....|- ++-+|.+.+|+|+|+-.......-+... .-|-.-++.. +.++..+.-.++-.|.+..+.++
T Consensus 836 aDv~LDTplcnGh-TTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak--~~eEY~~iaV~Latd~~~L~~lr 912 (966)
T KOG4626|consen 836 ADVCLDTPLCNGH-TTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK--NREEYVQIAVRLATDKEYLKKLR 912 (966)
T ss_pred hhhcccCcCcCCc-ccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh--hHHHHHHHHHHhhcCHHHHHHHH
Confidence 9999875543332 3456999999999986443222111000 1121222333 77888888888888888888887
Q ss_pred HHHHHHH-H--hCCHHHHHHHHHHHHHHHHHHHH
Q 022615 237 QAARQEM-E--KYDWRAATRTIRNEQYNAAIWFW 267 (294)
Q Consensus 237 ~~~~~~~-~--~~s~~~~~~~~~~~l~~~~~~~~ 267 (294)
..-+..- . -|+-...+..+. .+|.++-++.
T Consensus 913 ~~l~~~r~~splfd~~q~~~~LE-~~y~~MW~~y 945 (966)
T KOG4626|consen 913 AKLRKARASSPLFDTKQYAKGLE-RLYLQMWKKY 945 (966)
T ss_pred HHHHHHhcCCCccCchHHHHHHH-HHHHHHHHHh
Confidence 7766653 2 388889998887 7888775443
No 178
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.61 E-value=0.11 Score=44.27 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=63.6
Q ss_pred CCCceEEEeecc-cccccH--HHHHHHHHhC--CCcEEEEEcCCccHHHHHhhhcCC------C-eEEEecccchhHHHH
Q 022615 89 PDKPLIVHVGRL-GVEKSL--DFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM------P-AVFTGMLLGEELSQA 156 (294)
Q Consensus 89 ~~~~~i~~~G~~-~~~k~~--~~l~~~~~~~--~~~~l~i~G~~~~~~~~~~~~~~~------~-v~~~g~~~~~~~~~~ 156 (294)
++..+++..|.- ++.|.+ +.+.++++.+ .+.+++++|...+.+..++..... + +.+.|..+-.++..+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence 344566677763 355653 3455555444 367889999766655554443221 1 456677777999999
Q ss_pred HhcCCEEEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 157 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 157 ~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
++.||++|... +..+-=|.|.|+|+|+-
T Consensus 259 i~~a~l~I~nD-----TGp~HlAaA~g~P~val 286 (348)
T PRK10916 259 IAACKAIVTND-----SGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHhCCEEEecC-----ChHHHHHHHhCCCEEEE
Confidence 99999999764 33444589999999974
No 179
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.61 E-value=0.097 Score=44.32 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=66.5
Q ss_pred CceEEEee-cccccccH--HHHHHHHHhC--CCcEEEEEcCCccHHHHHhhhcCCC--eEEEecccchhHHHHHhcCCEE
Q 022615 91 KPLIVHVG-RLGVEKSL--DFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVF 163 (294)
Q Consensus 91 ~~~i~~~G-~~~~~k~~--~~l~~~~~~~--~~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~ 163 (294)
..+++..| ..+..|.+ +.+.++++.+ ...+++++|...+.+..+++.+..+ +.+.|..+-.++..++..||++
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~ 255 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLV 255 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCEE
Confidence 45677777 55566653 3455555444 2378999998766666666665543 2278888889999999999999
Q ss_pred EeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 164 VMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 164 l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
|.+. +..+-=|.|.|+|+|+--
T Consensus 256 I~~D-----Sg~~HlAaA~~~P~I~iy 277 (334)
T COG0859 256 IGND-----SGPMHLAAALGTPTIALY 277 (334)
T ss_pred EccC-----ChHHHHHHHcCCCEEEEE
Confidence 9775 334445889999999853
No 180
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.58 E-value=0.39 Score=40.09 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=48.6
Q ss_pred CcEEEEEcCCccHH----HHHhhhcC-CCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC
Q 022615 118 EARIAFIGDGPYRE----ELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 118 ~~~l~i~G~~~~~~----~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
+..+.|........ .+.+.... ..+.+...-+..-+..+|..||.++...-. -..+.||++.|+||.+-..+
T Consensus 182 ~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DS---vSMvsEA~~tG~pV~v~~l~ 258 (311)
T PF06258_consen 182 GGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDS---VSMVSEAAATGKPVYVLPLP 258 (311)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCcc---HHHHHHHHHcCCCEEEecCC
Confidence 36787777543333 33334422 245455555556688999999999987542 23478999999999887665
Q ss_pred C
Q 022615 193 G 193 (294)
Q Consensus 193 ~ 193 (294)
+
T Consensus 259 ~ 259 (311)
T PF06258_consen 259 G 259 (311)
T ss_pred C
Confidence 5
No 181
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=95.37 E-value=0.02 Score=47.56 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=49.1
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcC-CCEEeecC--CCcccccccCCCCcceeecCCCCHHHHHHHHH
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSG-IPVVGVRA--GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G-~pvI~~~~--~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~ 223 (294)
.+..+.|+.|.+++.|.....+..-++|||++| +|||.++. -.+.+.+ .=....+.++..+..++.+.|+
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~l---dw~~fsv~v~~~~~~~l~~iL~ 300 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVL---DWSRFSVRVPEADLPELPEILR 300 (302)
T ss_pred hHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCccccc---CHHHEEEEECHHHHHHHHHHHh
Confidence 568899999999999887766888999999999 57777653 2445555 2234555666555555555443
No 182
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=95.11 E-value=1.6 Score=36.21 Aligned_cols=151 Identities=20% Similarity=0.131 Sum_probs=84.3
Q ss_pred ccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecc
Q 022615 21 KPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL 100 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 100 (294)
...+++.+.+++++|.+.+=.+...+.+++.+ . ++.+.| |+....+...... . ...++..+++.-+-
T Consensus 115 ~~~r~~~~~~l~~~~~i~vRD~~S~~~l~~~g-~---~i~~~~---D~a~~l~~~~~~~-----~-~~~~~~~i~i~~r~ 181 (298)
T TIGR03609 115 RLSRWLVRRVLRGCRAISVRDAASYRLLKRLG-I---PAELAA---DPVWLLPPEPWPG-----G-EPLPEPVIVVSLRP 181 (298)
T ss_pred HHHHHHHHHHHccCCEEEEeCHHHHHHHHHhC-C---CceEeC---ChhhhCCCCcccc-----c-ccCCCCeEEEEECC
Confidence 34567888999999999998888888887643 3 455554 3333222111000 0 11123344433322
Q ss_pred -c--ccccHHHHHHHHHhC---CCcEEEEEcC--CccHHHHHhhhcCC--CeEEEecccchhHHHHHhcCCEEEeecCCC
Q 022615 101 -G--VEKSLDFLKRVMDRL---PEARIAFIGD--GPYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESE 170 (294)
Q Consensus 101 -~--~~k~~~~l~~~~~~~---~~~~l~i~G~--~~~~~~~~~~~~~~--~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e 170 (294)
. .....+.+.++++.+ .+.+++++.. ..+.+..+++.... +..+....+.+++.+++++||++|....
T Consensus 182 ~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~Rl-- 259 (298)
T TIGR03609 182 WPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRL-- 259 (298)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEech--
Confidence 1 122344555555544 2556655542 23333333333221 1222344556899999999999885542
Q ss_pred CcchHHHHHHhcCCCEEee
Q 022615 171 TLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~ 189 (294)
..++=|+.+|+|+|+-
T Consensus 260 ---H~~I~A~~~gvP~i~i 275 (298)
T TIGR03609 260 ---HALILAAAAGVPFVAL 275 (298)
T ss_pred ---HHHHHHHHcCCCEEEe
Confidence 3466799999999865
No 183
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.01 E-value=0.25 Score=42.05 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=61.5
Q ss_pred CCceEEEeecccccccH--HHHHHHHHhC--CCcEEEEEcCCc--cHHHHHhhh---cCCC-eEEEecccchhHHHHHhc
Q 022615 90 DKPLIVHVGRLGVEKSL--DFLKRVMDRL--PEARIAFIGDGP--YREELEKMF---TGMP-AVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~--~~l~~~~~~~--~~~~l~i~G~~~--~~~~~~~~~---~~~~-v~~~g~~~~~~~~~~~~~ 159 (294)
+..+++..|.-.+.|.+ +.+.++++.+ .+..++++|... +.+..++.. ...+ +.+.|..+-.++..+++.
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 44566777765565553 3444444433 367888988643 222233322 2222 446787777999999999
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
||++|... +..+-=|.|.|+|+|+-
T Consensus 261 a~l~Vs~D-----SGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 261 ARLFIGVD-----SVPMHMAAALGTPLVAL 285 (344)
T ss_pred CCEEEecC-----CHHHHHHHHcCCCEEEE
Confidence 99999764 34455589999999975
No 184
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.90 E-value=0.82 Score=38.30 Aligned_cols=192 Identities=15% Similarity=0.072 Sum_probs=108.4
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCc-CceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccc-c
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAA-NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG-V 102 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~-~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~-~ 102 (294)
-.++.+-+..|.|++.....-..+...++.+. -+-.+.+.|+=....+...... ....++..+++.+|.-. .
T Consensus 159 ~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~------~~~pE~~~Ilvs~GGG~dG 232 (400)
T COG4671 159 ETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPP------HEAPEGFDILVSVGGGADG 232 (400)
T ss_pred HHHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCC------cCCCccceEEEecCCChhh
Confidence 46778888899999988776666666665432 1224455554311110000000 00134566777777542 2
Q ss_pred cccHHHHHHHHHhCCCcE---EEEEcCCccHHHHHhh---hc-CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchH
Q 022615 103 EKSLDFLKRVMDRLPEAR---IAFIGDGPYREELEKM---FT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 175 (294)
Q Consensus 103 ~k~~~~l~~~~~~~~~~~---l~i~G~~~~~~~~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~ 175 (294)
..-++..++|...+++.+ +++.|..--....+++ +. ..++.+..+. +++..++..|+..|.-.. =++
T Consensus 233 ~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~--~~~~~ll~gA~~vVSm~G----YNT 306 (400)
T COG4671 233 AELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFR--NDFESLLAGARLVVSMGG----YNT 306 (400)
T ss_pred HHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhh--hhHHHHHHhhheeeeccc----chh
Confidence 223445555656656554 5666754323333333 22 3479999998 999999999999986542 256
Q ss_pred HHHHHhcCCCEEeecCCCc--ccccccC---CCCcceeec-CCCCHHHHHHHHHHHhhC
Q 022615 176 VLEAMSSGIPVVGVRAGGI--PDIIPED---QDGKIGYLF-NPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 176 ~~Ea~a~G~pvI~~~~~~~--~e~~~~~---~~~~~g~~~-~~~d~~~l~~~i~~ll~~ 228 (294)
+.|-+++|||.+.-+...- ...+... +=|-..++. +.-+++.++++|..+++-
T Consensus 307 vCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 307 VCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred hhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccC
Confidence 7899999999766543221 1222110 112222222 223578888888888763
No 185
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=94.44 E-value=2.2 Score=34.50 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=82.0
Q ss_pred ccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEee
Q 022615 19 LVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG 98 (294)
Q Consensus 19 ~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 98 (294)
.....+.+.+.++++++.+.+=.+...+.+.+ .+.+. ++.++|..+ ...+........ .......+.+..
T Consensus 113 ~~~~~~~~~~~~l~~~~~i~vRD~~S~~~l~~-~g~~~-~~~~~~D~a---f~l~~~~~~~~~-----~~~~~~~~~~~~ 182 (286)
T PF04230_consen 113 RSEEFKKLLRRILSKADYISVRDEYSYELLKK-LGISG-NVKLVPDPA---FLLPPSYPDEDK-----SKPKRNYISVSN 182 (286)
T ss_pred CCHHHHHHHHHHHhCCCEEEECCHHHHHHHHH-cCCCC-CcEEEeCch---hhcCcccccccc-----cccccceeeecc
Confidence 34455678899999999988888887775555 44443 777777544 221111111000 000111122222
Q ss_pred cc--cccccHHHHHHHHHhC--CC--cEEEEEcCCc--cH-HHHHh----hhcCCC-eEEEecccchhHHHHHhcCCEEE
Q 022615 99 RL--GVEKSLDFLKRVMDRL--PE--ARIAFIGDGP--YR-EELEK----MFTGMP-AVFTGMLLGEELSQAYASGDVFV 164 (294)
Q Consensus 99 ~~--~~~k~~~~l~~~~~~~--~~--~~l~i~G~~~--~~-~~~~~----~~~~~~-v~~~g~~~~~~~~~~~~~ad~~l 164 (294)
.. ......+.+.+.+..+ .. +.+....... .. ..... .....+ .......+.+++.++++.++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 262 (286)
T PF04230_consen 183 SPSRNNEEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVI 262 (286)
T ss_pred ccchhhhhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEE
Confidence 11 1222234444444443 22 2333232211 11 11111 111112 33444556689999999999999
Q ss_pred eecCCCCcchHHHHHHhcCCCEEeecC
Q 022615 165 MPSESETLGLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 191 (294)
.... ...+=|+++|+|+|+-..
T Consensus 263 s~Rl-----H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 263 SMRL-----HGAILALSLGVPVIAISY 284 (286)
T ss_pred ecCC-----HHHHHHHHcCCCEEEEec
Confidence 7653 345669999999997543
No 186
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.91 E-value=0.077 Score=37.73 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=32.4
Q ss_pred chhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcc
Q 022615 150 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP 195 (294)
Q Consensus 150 ~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~ 195 (294)
.+++.+++..+|++|-.|..+..-..+-.++.+|+|+|+...|...
T Consensus 58 ~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 58 TDDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSD 103 (124)
T ss_dssp BS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHH
T ss_pred chhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCH
Confidence 3778999999999998887666666677788999999987666543
No 187
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.83 E-value=0.21 Score=33.77 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=48.6
Q ss_pred EEEEcC-CccHHHHHhhhcCCCeE--EE---ecccchh--HHHHHhcCCEEEeecCCC---CcchHHHHHHhcCCCEEee
Q 022615 121 IAFIGD-GPYREELEKMFTGMPAV--FT---GMLLGEE--LSQAYASGDVFVMPSESE---TLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 121 l~i~G~-~~~~~~~~~~~~~~~v~--~~---g~~~~~~--~~~~~~~ad~~l~ps~~e---~~~~~~~Ea~a~G~pvI~~ 189 (294)
++|+|. ......+.+..++.+.. ++ +...... +...++.||++|++...- ..-..--+|-..|+|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 456665 44556666666666533 33 2233334 899999999999987532 2233345667789999988
Q ss_pred cCCCcccc
Q 022615 190 RAGGIPDI 197 (294)
Q Consensus 190 ~~~~~~e~ 197 (294)
+..+...+
T Consensus 82 ~~~~~~~l 89 (97)
T PF10087_consen 82 RSRGVSSL 89 (97)
T ss_pred CCCCHHHH
Confidence 76554433
No 188
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.92 E-value=4.2 Score=32.81 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=26.4
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecC
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 191 (294)
.-..++++.||.++.....- +...||.+.|+||-+-..
T Consensus 236 NPY~~~La~Adyii~TaDSi---nM~sEAasTgkPv~~~~~ 273 (329)
T COG3660 236 NPYIDMLAAADYIISTADSI---NMCSEAASTGKPVFILEP 273 (329)
T ss_pred CchHHHHhhcceEEEecchh---hhhHHHhccCCCeEEEec
Confidence 34678888888888764322 235699999999876533
No 189
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=91.31 E-value=2.7 Score=30.64 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=55.1
Q ss_pred ceEEEeecccccccHHHHHHHH---------HhCCCcEEEE-EcCC-cc-HHHHHhhhcCCCeEEEecccchhHHHHHhc
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVM---------DRLPEARIAF-IGDG-PY-REELEKMFTGMPAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~---------~~~~~~~l~i-~G~~-~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 159 (294)
.+++.+|.-. ++.|+.++ .+..=.+++| +|.| .. .+......+...+.+.++--...+.+.++.
T Consensus 5 ~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~ 80 (170)
T KOG3349|consen 5 TVFVTVGTTS----FDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS 80 (170)
T ss_pred EEEEEecccc----HHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh
Confidence 3566677553 44444433 2322245544 4665 21 122222223445677777666899999999
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
||+++.= +...+++|.+..|+|.|+-
T Consensus 81 AdlVIsH----AGaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 81 ADLVISH----AGAGSCLETLRLGKPLIVV 106 (170)
T ss_pred ccEEEec----CCcchHHHHHHcCCCEEEE
Confidence 9999842 3456799999999998764
No 190
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=90.85 E-value=2 Score=30.39 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=39.9
Q ss_pred HHHHHhcCCEEEeecC--CCCcchH--HHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 153 LSQAYASGDVFVMPSE--SETLGLV--VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 153 ~~~~~~~ad~~l~ps~--~e~~~~~--~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
-..++..||++|.-.. +--+... .--|.|.|+|.|+-..+....-+ +.-......-..++++..+.|..++
T Consensus 69 T~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpL---KEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 69 TRKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPL---KEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccH---HHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 4478999999886431 1111111 23467899999987655444444 2222222333346777777666543
No 191
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=90.62 E-value=1.8 Score=36.94 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=62.3
Q ss_pred HHHHhhhcCCCeEEEecc------cchhHHHHHhcCCEEEeecC--CC-CcchHHHHHHhcCCCEEeec--CCCcccccc
Q 022615 131 EELEKMFTGMPAVFTGML------LGEELSQAYASGDVFVMPSE--SE-TLGLVVLEAMSSGIPVVGVR--AGGIPDIIP 199 (294)
Q Consensus 131 ~~~~~~~~~~~v~~~g~~------~~~~~~~~~~~ad~~l~ps~--~e-~~~~~~~Ea~a~G~pvI~~~--~~~~~e~~~ 199 (294)
+.++++.+...|...|.. +.++..++++...+.+..-. .+ -..-++.+|+.+|+..|.-. .+...++++
T Consensus 193 ~~~~~L~~~~~vd~yG~c~~~~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P 272 (349)
T PF00852_consen 193 EYVRELSKYIPVDSYGKCGNNNPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAP 272 (349)
T ss_dssp HHHHHHHTTS-EEE-SSTT--SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-
T ss_pred HHHHHHHhhcCeEccCCCCCCCCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCC
Confidence 445555555678888876 23467899999999987643 22 34668999999997666554 556666662
Q ss_pred cCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHH
Q 022615 200 EDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRET 234 (294)
Q Consensus 200 ~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~ 234 (294)
.+.--.+-+..+++++++.|..+..|++.+.+
T Consensus 273 ---~~SfI~~~df~s~~~La~yl~~l~~n~~~Y~~ 304 (349)
T PF00852_consen 273 ---PNSFIHVDDFKSPKELADYLKYLDKNDELYNK 304 (349)
T ss_dssp ---GGGSEEGGGSSSHHHHHHHHHHHHT-HHHHH-
T ss_pred ---CCCccchhcCCCHHHHHHHHHHHhcCHHHHhh
Confidence 22222222445899999999999999887764
No 192
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=90.52 E-value=1.6 Score=30.75 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=41.7
Q ss_pred HHHHHhcCCEEEeecC--CCCcchH--HHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 153 LSQAYASGDVFVMPSE--SETLGLV--VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 153 ~~~~~~~ad~~l~ps~--~e~~~~~--~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
-..++..||++|.-.. +--+... .--|.|.|+|.|+-.......-+ +.-......-..++++..+.|..++
T Consensus 66 T~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpL---KEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 66 TRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPL---KEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccH---HHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 4478999999886431 1111111 23467899999987665554444 2222233333447888877777654
No 193
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=89.58 E-value=1.9 Score=38.41 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=55.2
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcC-CCEEeecCC--CcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSG-IPVVGVRAG--GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G-~pvI~~~~~--~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
..+.+.++.|.+++.|...+.....++||+..| +|||.++.- ...+.+ .-..-.+.++. +++.+.|.+.|.
T Consensus 335 ~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~---d~~~fSV~v~~---~~v~~~~~~iL~ 408 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVL---DWTEFSVFVPE---KDVPELIKNILL 408 (464)
T ss_pred chHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCc---cceEEEEEEEH---HHhhhHHHHHHH
Confidence 678899999999999999888888999999999 678888763 333333 22244444443 333333344443
Q ss_pred --ChHHHHHHHHHHHH
Q 022615 228 --NQELRETMGQAARQ 241 (294)
Q Consensus 228 --~~~~~~~~~~~~~~ 241 (294)
..+.+..|.++...
T Consensus 409 ~i~~~~~~~m~~~v~~ 424 (464)
T KOG1021|consen 409 SIPEEEVLRMRENVIR 424 (464)
T ss_pred hcCHHHHHHHHHHHHH
Confidence 23345555555554
No 194
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=89.25 E-value=14 Score=32.19 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=41.3
Q ss_pred cccchhHHHHHhcCCEEEeecCC--CCcchHHH-HHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHH
Q 022615 147 MLLGEELSQAYASGDVFVMPSES--ETLGLVVL-EAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLS 220 (294)
Q Consensus 147 ~~~~~~~~~~~~~ad~~l~ps~~--e~~~~~~~-Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~ 220 (294)
.++.+++..++..+|+++..+.. .-.+...+ +++.-....+.-|.+..+++-+....-.+.++++-+|.+.+.+
T Consensus 226 ~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~l~~v~l~~iDDL~~iv~ 302 (414)
T COG0373 226 AVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGELPNVFLYTIDDLEEIVE 302 (414)
T ss_pred eecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCccccCcCCeEEEehhhHHHHHH
Confidence 44558999999999999987542 22343333 4444444456667765555541111112345665555544433
No 195
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=89.12 E-value=0.78 Score=29.60 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=47.9
Q ss_pred HHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccc
Q 022615 28 KFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG 101 (294)
Q Consensus 28 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 101 (294)
..+....|.|++......+.+++.+ . .+|+.+|.++++..+.+....... ...-.--|.|+|+.-
T Consensus 13 ~~i~~~~~~iFt~D~~~~~~~~~~G-~--~~V~yLPLAa~~~~~~p~~~~~~~------~~~~~~dIsFVG~~y 77 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRSFVEEYRNLG-A--ENVFYLPLAANPERFRPIPVDPEE------RKKYECDISFVGSLY 77 (79)
T ss_pred hhhCCCCCEEEEECHHHHHHHHHcC-C--CCEEEccccCCHHHhCcccCCccc------ccccCCCEEEeCcCc
Confidence 3557889999999999999999864 3 489999999999999886443110 012234588999763
No 196
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=89.06 E-value=10 Score=32.08 Aligned_cols=200 Identities=15% Similarity=0.165 Sum_probs=115.3
Q ss_pred CCeEEecchhh---HHHHHHhccCCcCceEEeeccccCCCCCCCccchH-HHHHhhcC--CCCCceEEEeeccccccc--
Q 022615 34 ADLTLVPSVAI---GKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE-MRWRLSNG--EPDKPLIVHVGRLGVEKS-- 105 (294)
Q Consensus 34 ad~ii~~s~~~---~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~-~~~~~~~~--~~~~~~i~~~G~~~~~k~-- 105 (294)
.|.|.+.-+.. ..+++.... .++.++|.--++.++......-. ...+++.. .+...+-+|--++.-.|.
T Consensus 130 yD~VW~lPq~~~~~~~yl~~l~r---~Pv~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~ 206 (364)
T PF10933_consen 130 YDEVWTLPQFENTCAPYLETLHR---CPVRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVVKTCF 206 (364)
T ss_pred CceeEeccchhhhchHHHHHHhc---CCceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEEeecC
Confidence 47777654422 344555443 35677776444333321110000 00011111 223334556566666665
Q ss_pred -HHHHH-HHHHhCCC-cEEEEEcCC---ccHHHHHhhhc------CCCeEEEecccchhHHHHHhc-CCEEEeecCCCCc
Q 022615 106 -LDFLK-RVMDRLPE-ARIAFIGDG---PYREELEKMFT------GMPAVFTGMLLGEELSQAYAS-GDVFVMPSESETL 172 (294)
Q Consensus 106 -~~~l~-~~~~~~~~-~~l~i~G~~---~~~~~~~~~~~------~~~v~~~g~~~~~~~~~~~~~-ad~~l~ps~~e~~ 172 (294)
..+++ ++.+.-|+ +..+.+-+. .+...+...+. .....|.|+. +++.+++. .|++|.=-+-.+.
T Consensus 207 ~PmLi~E~aYR~~P~~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~---~~p~fla~~tD~VvSHqWeN~l 283 (364)
T PF10933_consen 207 IPMLICEEAYRADPDAVEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF---DFPDFLAQHTDAVVSHQWENPL 283 (364)
T ss_pred ccHHHHHHHHHhChhhcceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec---ChHHHHHhCCCEEEeccccchh
Confidence 23333 45566665 333333321 12223333332 3346677765 44555544 5888876666678
Q ss_pred chHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHhCCHH
Q 022615 173 GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWR 249 (294)
Q Consensus 173 ~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~s~~ 249 (294)
..-.+|++.-|=|.|-. ..++ ++.|+.++..|..+=+++|.+.+. .+...+...+.+++.+..++..
T Consensus 284 NYlY~daLyggYPLVHN-----S~~l-----~d~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p~ 351 (364)
T PF10933_consen 284 NYLYYDALYGGYPLVHN-----SPLL-----KDVGYYYPDFDAFEGARQLLRAIREHDADLDAYRARARRLLDRLSPE 351 (364)
T ss_pred hHHHHHHHhcCCCcccC-----cchh-----cccCcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhCCC
Confidence 88899999999999974 5566 458999999999999999988886 4556778888888888765543
No 197
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=86.02 E-value=6 Score=35.35 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=71.6
Q ss_pred eEEEecccchhHHHHHhcCCEEEe-ecC-----CCCcchHHHHHHhcC-CCEEeecCC--CcccccccCCCCcceeecCC
Q 022615 142 AVFTGMLLGEELSQAYASGDVFVM-PSE-----SETLGLVVLEAMSSG-IPVVGVRAG--GIPDIIPEDQDGKIGYLFNP 212 (294)
Q Consensus 142 v~~~g~~~~~~~~~~~~~ad~~l~-ps~-----~e~~~~~~~Ea~a~G-~pvI~~~~~--~~~e~~~~~~~~~~g~~~~~ 212 (294)
....|.- ++-.++++.+.+.+. |.. .+++-..++||+..| +|||.++.- .+.+++ .=....+..+.
T Consensus 401 walcg~~--~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~i---dWrraal~lPk 475 (907)
T KOG2264|consen 401 WALCGER--ERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLI---DWRRAALRLPK 475 (907)
T ss_pred hhhccch--HHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHH---HHHHHhhhCCc
Confidence 3445554 777899999987665 321 456677799999999 677776542 445555 22334444443
Q ss_pred CCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Q 022615 213 GDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWRKKRAQLLRPIQ 279 (294)
Q Consensus 213 ~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 279 (294)
.-..+.. -+.+.+.|.+ .-.|+..+ ++-|+.....-. .+.+.+++.-+.+-+-..+|++
T Consensus 476 aR~tE~H-Fllrs~~dsD-ll~mRRqG-----Rl~wEtYls~~~-~~~~tvlA~lR~rlqIP~rpvr 534 (907)
T KOG2264|consen 476 ARLTEAH-FLLRSFEDSD-LLEMRRQG-----RLFWETYLSDRH-LLARTVLAALRYRLQIPTRPVR 534 (907)
T ss_pred cccchHH-HHHHhcchhh-HHHHHhhh-----hhhHHHHhhHHH-HHHHHHHHHHHHhhCCCCcccc
Confidence 3333332 2333334433 34455444 355666666665 7788887776555444444443
No 198
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=84.47 E-value=17 Score=28.26 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=49.1
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccc
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDI 197 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~ 197 (294)
+.++.++.. ...+.+.++.....+.+.... -....+..+|+++..+..+.....+.+....|++|-+.+.+...++
T Consensus 33 ga~V~VIs~-~~~~~l~~l~~~~~i~~~~~~---~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f 108 (202)
T PRK06718 33 GAHIVVISP-ELTENLVKLVEEGKIRWKQKE---FEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAESGNV 108 (202)
T ss_pred CCeEEEEcC-CCCHHHHHHHhCCCEEEEecC---CChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeE
Confidence 356777764 233455556555455554332 1234567899988887766667777777778888877777666665
Q ss_pred c
Q 022615 198 I 198 (294)
Q Consensus 198 ~ 198 (294)
+
T Consensus 109 ~ 109 (202)
T PRK06718 109 V 109 (202)
T ss_pred E
Confidence 5
No 199
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=83.18 E-value=17 Score=31.11 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=55.9
Q ss_pred cchhHHHHHhcCCEEEeecC--C-CCcchHHHHHHhcC-CCEEeecCCCcccccccCCCCccee-ecCCCCHHHHHHHHH
Q 022615 149 LGEELSQAYASGDVFVMPSE--S-ETLGLVVLEAMSSG-IPVVGVRAGGIPDIIPEDQDGKIGY-LFNPGDLDDCLSKLE 223 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~ps~--~-e~~~~~~~Ea~a~G-~pvI~~~~~~~~e~~~~~~~~~~g~-~~~~~d~~~l~~~i~ 223 (294)
+...+...++...++|.--. . +-..-|+.-|+-+| +||+... +...++++ ...-+ +-+..+++++++.|+
T Consensus 240 ~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~-~n~e~fvP----~~SfI~vdDF~s~~ela~ylk 314 (372)
T KOG2619|consen 240 PSDCLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGP-PNYENFVP----PDSFIHVDDFQSPQELAAYLK 314 (372)
T ss_pred CCCcceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECC-ccccccCC----CcceEehhhcCCHHHHHHHHH
Confidence 34567777778888876422 2 23466777788888 6666655 66777772 22222 334568999999999
Q ss_pred HHhhChHHHHHHH
Q 022615 224 PLLYNQELRETMG 236 (294)
Q Consensus 224 ~ll~~~~~~~~~~ 236 (294)
++-+|+..+.+.-
T Consensus 315 ~L~~n~~~Y~~Yf 327 (372)
T KOG2619|consen 315 KLDKNPAAYLSYF 327 (372)
T ss_pred HhhcCHHHHHHHH
Confidence 9999988776543
No 200
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=83.08 E-value=10 Score=32.50 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=60.6
Q ss_pred CCCceEEEeecccccccHHHHHHHHHhCCC-cEEEEEcCCccHHHHHhhhc-------------CCCeEEEecccchhHH
Q 022615 89 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPE-ARIAFIGDGPYREELEKMFT-------------GMPAVFTGMLLGEELS 154 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~-~~l~i~G~~~~~~~~~~~~~-------------~~~v~~~g~~~~~~~~ 154 (294)
++...|..++.- .-.+..+++++...+. +.+.+.+ |.-...+..... ...+.++++++++++.
T Consensus 182 ~~~~~vslF~Ye--~~~l~~ll~~~~~~~~pv~llvp~-g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD 258 (374)
T PF10093_consen 182 PGALRVSLFCYE--NAALASLLDAWAASPKPVHLLVPE-GRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYD 258 (374)
T ss_pred CCCeEEEEEeCC--chHHHHHHHHHhcCCCCeEEEecC-CccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHH
Confidence 344455544422 1227888888887754 4454444 333334432221 1138899999999999
Q ss_pred HHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEe
Q 022615 155 QAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 188 (294)
Q Consensus 155 ~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~ 188 (294)
+++..||+.+.-. --+++-|.-+|+|.|=
T Consensus 259 ~LLw~cD~NfVRG-----EDSfVRAqwAgkPFvW 287 (374)
T PF10093_consen 259 RLLWACDFNFVRG-----EDSFVRAQWAGKPFVW 287 (374)
T ss_pred HHHHhCccceEec-----chHHHHHHHhCCCceE
Confidence 9999999987643 2458899999999984
No 201
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.72 E-value=16 Score=30.01 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=54.4
Q ss_pred cHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcC-------------CCeEEEecccchhHHHHHhcCCEEEeecCCCC
Q 022615 105 SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTG-------------MPAVFTGMLLGEELSQAYASGDVFVMPSESET 171 (294)
Q Consensus 105 ~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~-------------~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~ 171 (294)
.+..+++.+++...-.+.++-.|.....+.+.... ..+..+++++++++.+++..||+-+.-.
T Consensus 190 a~~s~ieq~r~a~~p~llL~~e~~~~~~~~~~~~~~~~a~Gdv~~~~~lrvvklPFvpqddyd~LL~lcD~n~VRG---- 265 (370)
T COG4394 190 ALPSWIEQLRKADKPILLLIPEGKTQANFAKYFDNNNNADGDVFQTAKLRVVKLPFVPQDDYDELLWLCDFNLVRG---- 265 (370)
T ss_pred chHHHHHHHHhcCCCEEEEcccchHHHHHHHHcCCCcccccchhcccceEEEEecCCcHhHHHHHHHhcccceeec----
Confidence 46667777777654444444434333444443321 1377899999999999999999987653
Q ss_pred cchHHHHHHhcCCCEEee
Q 022615 172 LGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 172 ~~~~~~Ea~a~G~pvI~~ 189 (294)
--++.-|..+|+|.+=.
T Consensus 266 -EDSFVRAq~agkPflWH 282 (370)
T COG4394 266 -EDSFVRAQLAGKPFLWH 282 (370)
T ss_pred -chHHHHHHHcCCCcEEE
Confidence 34688999999998743
No 202
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=80.84 E-value=34 Score=29.07 Aligned_cols=136 Identities=12% Similarity=0.066 Sum_probs=66.6
Q ss_pred hCCCcEEEEEcCCccHHHHHhhhcCCC---eEEEec----ccchhHH----HHHhcCCEEEeecC--CCCcchHHHHHHh
Q 022615 115 RLPEARIAFIGDGPYREELEKMFTGMP---AVFTGM----LLGEELS----QAYASGDVFVMPSE--SETLGLVVLEAMS 181 (294)
Q Consensus 115 ~~~~~~l~i~G~~~~~~~~~~~~~~~~---v~~~g~----~~~~~~~----~~~~~ad~~l~ps~--~e~~~~~~~Ea~a 181 (294)
.+.+.++.++|.|...+...+.+...+ +.+..+ .+.+++. .+...+|+++..+. ....|....|.+.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~ 250 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLA 250 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHh
Confidence 345679999999987766555554433 444332 2344443 66789999998642 2233444455544
Q ss_pred cCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 022615 182 SGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 182 ~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~ 261 (294)
--.+-+.-|..-.+++=+ .....+..++ |.+++.+.+.+ +...+++....+...++ ..+.+++ +.|+
T Consensus 251 ~~~~r~~iDLAvPRdId~-v~~~~~v~Ly---~iDdL~~i~~~---n~~~R~~~~~~ae~iI~-----~~~~~~~-~~~~ 317 (338)
T PRK00676 251 DIPDRIVFDFNVPRTFPW-SETPFPHRYL---DMDFISEWVQK---HLQCRKEVNNKHKLSLR-----EAAYKQW-ESYE 317 (338)
T ss_pred hccCcEEEEecCCCCCcc-ccccCCcEEE---EhHHHHHHHHH---HHHHHHHHHHHHHHHHH-----HHHHHHH-HHHH
Confidence 222124444443333210 0122233344 45555444433 22233444444444433 3445555 4555
Q ss_pred HH
Q 022615 262 AA 263 (294)
Q Consensus 262 ~~ 263 (294)
+-
T Consensus 318 ~~ 319 (338)
T PRK00676 318 KK 319 (338)
T ss_pred HH
Confidence 43
No 203
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=80.54 E-value=11 Score=32.73 Aligned_cols=87 Identities=10% Similarity=-0.028 Sum_probs=59.3
Q ss_pred CcchHHHHHHhcCCCEEeecCC---CcccccccCCCCcceeecCC-CCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh-
Q 022615 171 TLGLVVLEAMSSGIPVVGVRAG---GIPDIIPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQAARQEMEK- 245 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~~~---~~~e~~~~~~~~~~g~~~~~-~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~- 245 (294)
+++..+.--|+||-.|+..+.. .+.+.+ ....+-+-+.. ++..++.++|..+.++++..+++++++++++++
T Consensus 225 ~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L---~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~ 301 (395)
T PF05686_consen 225 AWSGRLKYLLACNSVVLKVKSPYYEFFYRAL---KPWVHYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRFAREY 301 (395)
T ss_pred eeehhHHHHHcCCceEEEeCCcHHHHHHhhh---cccccEEEeccccchhhHHHHhhhcccChHHHHHHHHHHHHHHHHH
Confidence 4456666679999998875432 122223 33444444443 478999999999989999999999999999854
Q ss_pred CCHHHHHHHHHHHHHH
Q 022615 246 YDWRAATRTIRNEQYN 261 (294)
Q Consensus 246 ~s~~~~~~~~~~~l~~ 261 (294)
.+.+.+..=+. .+..
T Consensus 302 L~~~~~~~Y~~-~LL~ 316 (395)
T PF05686_consen 302 LTMEDVYCYWR-RLLL 316 (395)
T ss_pred hhhhHHHHHHH-HHHH
Confidence 77766655444 4443
No 204
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=79.78 E-value=1.5 Score=33.09 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=35.5
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCC
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF 71 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~ 71 (294)
..-..+..+|..+++|.+.++.+-..+ .+||.||+.|||.+.+
T Consensus 128 ~~l~~l~~~D~~isPT~wQ~~~fP~~~---r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 128 HNLLALEQADAGISPTRWQRSQFPAEF---RSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHHHHhCCcCcCCCHHHHHhCCHHH---HcCcEEeecccchhhc
Confidence 345557789999999999999987765 3699999999998754
No 205
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=79.45 E-value=6.8 Score=31.81 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=32.9
Q ss_pred chhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC
Q 022615 150 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 150 ~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
.+++.+++..+|+++..+..+...-.+..++..|+|+|+...+
T Consensus 51 ~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 51 TDDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred cCCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3677777778999997766555556678899999999987544
No 206
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=79.30 E-value=30 Score=27.51 Aligned_cols=101 Identities=23% Similarity=0.385 Sum_probs=62.1
Q ss_pred EEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccH--HHHHhhhcCCCeEEEecccchhHH-HHH--hcCCEEEeecC
Q 022615 94 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR--EELEKMFTGMPAVFTGMLLGEELS-QAY--ASGDVFVMPSE 168 (294)
Q Consensus 94 i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~v~~~g~~~~~~~~-~~~--~~ad~~l~ps~ 168 (294)
|+=.|+++...-++++++-...-.++.+.++|.|... +.. +++. ..+ ...|++++.|-
T Consensus 7 iiKlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~-----------------~~~~~~~~~~~~pDf~i~isP 69 (277)
T PRK00994 7 IIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEV-----------------EEVVKKMLEEWKPDFVIVISP 69 (277)
T ss_pred EEEecccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHH-----------------HHHHHHHHHhhCCCEEEEECC
Confidence 5667888777777888777666678999999987521 111 1112 221 24577766554
Q ss_pred --CCCcchHHHHHHh-cCCCEEe-ecCCCcc--cccccCCCCcceeecCCCC
Q 022615 169 --SETLGLVVLEAMS-SGIPVVG-VRAGGIP--DIIPEDQDGKIGYLFNPGD 214 (294)
Q Consensus 169 --~e~~~~~~~Ea~a-~G~pvI~-~~~~~~~--e~~~~~~~~~~g~~~~~~d 214 (294)
.-..|.+.-|.+. .|+|+|+ +|.++.. +.+ +..+-|+++-..|
T Consensus 70 N~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l---~~~g~GYIivk~D 118 (277)
T PRK00994 70 NPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAM---EEQGLGYIIVKAD 118 (277)
T ss_pred CCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHH---HhcCCcEEEEecC
Confidence 3445677788876 6889765 5555442 444 5566777665444
No 207
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=78.13 E-value=45 Score=28.87 Aligned_cols=200 Identities=12% Similarity=0.050 Sum_probs=103.6
Q ss_pred cCCCcccccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCce
Q 022615 14 YTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPL 93 (294)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (294)
..+.......+++.+..++.+..+++=.+...++++.. +++ ..... |+...-+......... ....+.+.+
T Consensus 133 svGP~~~~~s~~~~~~~~~~~s~i~vRD~~S~~llk~~-gi~---a~l~~---D~Af~L~~~~~~~~~~--~~~~~~~~~ 203 (385)
T COG2327 133 SVGPLKHPLSRQLLNYVLGGCSAISVRDPVSYELLKQL-GIN---ARLVT---DPAFLLPASSQNATAS--DVEAREKTV 203 (385)
T ss_pred cCCCccCHHHHHHHHHHhcCCcEEEEecHHhHHHHHHc-CCC---eEeec---Ccceeccccccccccc--ccccccceE
Confidence 33445566778999999999999999888888888854 343 22222 4443322111110000 001122333
Q ss_pred EEEeeccccccc--------HHHHHHHHHhC--CCcE--EEEEcCCccHHHHHhhhcC----CCeEEEecccchhHHHHH
Q 022615 94 IVHVGRLGVEKS--------LDFLKRVMDRL--PEAR--IAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAY 157 (294)
Q Consensus 94 i~~~G~~~~~k~--------~~~l~~~~~~~--~~~~--l~i~G~~~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~ 157 (294)
.+..-.+.+... ...+++.++.. ...+ ++-.+...+..-.+..... .++.+...-..+++...+
T Consensus 204 ~i~lr~~~~~~t~~~~~~~~v~~~l~~~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l 283 (385)
T COG2327 204 AITLRGLHPDNTAQRSILKYVNEALDLVERQVKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGIL 283 (385)
T ss_pred EEEecccCCchhhhHHHHHHHHHHHHHHHHhhhcceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHh
Confidence 333333333221 22233333222 2222 2333333333333332222 234444333236677899
Q ss_pred hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC----CcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChH
Q 022615 158 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 230 (294)
Q Consensus 158 ~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~ 230 (294)
+.+|++|..- =.+++=|++.|+|+|+-... ++.+.+ .-.+...-..+.+.+.+.+...+.+.+.+
T Consensus 284 ~~~dl~Vg~R-----~HsaI~al~~g~p~i~i~Y~~K~~~l~~~~---gl~~~~~~i~~~~~~~l~~~~~e~~~~~~ 352 (385)
T COG2327 284 AACDLIVGMR-----LHSAIMALAFGVPAIAIAYDPKVRGLMQDL---GLPGFAIDIDPLDAEILSAVVLERLTKLD 352 (385)
T ss_pred ccCceEEeeh-----hHHHHHHHhcCCCeEEEeecHHHHHHHHHc---CCCcccccCCCCchHHHHHHHHHHHhccH
Confidence 9999988543 24577799999999986442 233333 11122233445678888888888776543
No 208
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=77.43 E-value=22 Score=30.67 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=53.4
Q ss_pred cccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeE-EEecccchhHHHHHhcC--CEEEeecCCCCcchHHHHH
Q 022615 103 EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAV-FTGMLLGEELSQAYASG--DVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 103 ~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~-~~g~~~~~~~~~~~~~a--d~~l~ps~~e~~~~~~~Ea 179 (294)
.++.+.+.+..+.+. .+++++++......+++.....++. +.| .+.+.++.... |+++........-...++|
T Consensus 36 ~~n~~~l~~q~~~f~-p~~v~i~~~~~~~~l~~~l~~~~~~v~~G---~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~A 111 (385)
T PRK05447 36 GKNVELLAEQAREFR-PKYVVVADEEAAKELKEALAAAGIEVLAG---EEGLCELAALPEADVVVAAIVGAAGLLPTLAA 111 (385)
T ss_pred CCCHHHHHHHHHHhC-CCEEEEcCHHHHHHHHHhhccCCceEEEC---hhHHHHHhcCCCCCEEEEeCcCcccHHHHHHH
Confidence 467788888877774 3555666554445555544332332 233 26777777754 8888776543333568899
Q ss_pred HhcCCCEEeec
Q 022615 180 MSSGIPVVGVR 190 (294)
Q Consensus 180 ~a~G~pvI~~~ 190 (294)
+.+|++|.+.+
T Consensus 112 i~aGK~VaLAN 122 (385)
T PRK05447 112 IRAGKRIALAN 122 (385)
T ss_pred HHCCCcEEEeC
Confidence 99999998854
No 209
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=77.13 E-value=3.8 Score=31.44 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeec
Q 022615 23 MWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKK 64 (294)
Q Consensus 23 ~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~ 64 (294)
+..+.+.+++..|.|++.|+..++.+.+.+ .+++++.+.+|
T Consensus 139 ~~~~~r~~l~~f~~i~aqs~~da~r~~~lG-~~~~~v~v~Gn 179 (186)
T PF04413_consen 139 FPFLFRPLLSRFDRILAQSEADAERFRKLG-APPERVHVTGN 179 (186)
T ss_dssp --HHHHHHGGG-SEEEESSHHHHHHHHTTT--S--SEEE---
T ss_pred hHHHHHHHHHhCCEEEECCHHHHHHHHHcC-CCcceEEEeCc
Confidence 456899999999999999999999999865 56678998876
No 210
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=76.47 E-value=40 Score=27.42 Aligned_cols=83 Identities=5% Similarity=-0.026 Sum_probs=55.5
Q ss_pred CcchHHHHHHhcCCCEEeecCC---CcccccccCCCCcceeecCCC-CHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh-
Q 022615 171 TLGLVVLEAMSSGIPVVGVRAG---GIPDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYNQELRETMGQAARQEMEK- 245 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~~~---~~~e~~~~~~~~~~g~~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~- 245 (294)
+++..+.=.|+||-.|+..... .+.+.+ .....-+-+..+ +.+++.++|..+..+++..+++++++++++++
T Consensus 156 ~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L---~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~ 232 (256)
T smart00672 156 AWSVRLKYILACDSVVLKVKPEYYEFFSRGL---QPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQN 232 (256)
T ss_pred cchhhHHHHHhcCceEEEeCCchhHHHHhcc---cCccceEEeeCCCchhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 4566677788899888876532 222223 233333333322 22459999999999999999999999999876
Q ss_pred CCHHHHHHHHH
Q 022615 246 YDWRAATRTIR 256 (294)
Q Consensus 246 ~s~~~~~~~~~ 256 (294)
.+.+.+..-+.
T Consensus 233 L~~~~~~~Y~~ 243 (256)
T smart00672 233 LSMEDVYDYMF 243 (256)
T ss_pred cCHHHHHHHHH
Confidence 77777665555
No 211
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=76.11 E-value=54 Score=28.82 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=30.0
Q ss_pred cchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccc
Q 022615 149 LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDI 197 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~ 197 (294)
+.+++.+.+..+|+++..+....+=.. ..+.-+.|.+.-|.+-.+++
T Consensus 232 ~~~~l~~~l~~aDiVI~aT~a~~~vi~--~~~~~~~~~~~iDLavPRdi 278 (414)
T PRK13940 232 YLSELPQLIKKADIIIAAVNVLEYIVT--CKYVGDKPRVFIDISIPQAL 278 (414)
T ss_pred cHHHHHHHhccCCEEEECcCCCCeeEC--HHHhCCCCeEEEEeCCCCCC
Confidence 347888999999999987643222111 22335788888787654444
No 212
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=75.85 E-value=20 Score=30.58 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=54.7
Q ss_pred cHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhc-------------CCCeEEEecccchhHHHHHhcCCEEEeecCCCC
Q 022615 105 SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT-------------GMPAVFTGMLLGEELSQAYASGDVFVMPSESET 171 (294)
Q Consensus 105 ~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~-------------~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~ 171 (294)
.+..++++++....-...++-.|.-...+..... ...+.++++++++++.+++-.||+-+.-.
T Consensus 194 al~~ll~~~~~~~~pv~lLvp~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfVRG---- 269 (371)
T TIGR03837 194 ALPALLDALAQSGSPVHLLVPEGRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDLNFVRG---- 269 (371)
T ss_pred hHHHHHHHHHhCCCCeEEEecCCccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChhcEeec----
Confidence 4788899988764433344433433333333221 12388899999999999999999987643
Q ss_pred cchHHHHHHhcCCCEEe
Q 022615 172 LGLVVLEAMSSGIPVVG 188 (294)
Q Consensus 172 ~~~~~~Ea~a~G~pvI~ 188 (294)
--+++-|.-+|+|.|=
T Consensus 270 -EDSFVRAqWAgkPfvW 285 (371)
T TIGR03837 270 -EDSFVRAQWAGKPFVW 285 (371)
T ss_pred -hhHHHHHHHcCCCcee
Confidence 3468899999999983
No 213
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=75.75 E-value=23 Score=24.41 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=47.7
Q ss_pred HHHHHHhC-CCcEEE-EEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCCCCcchHHHHHHhcCC
Q 022615 109 LKRVMDRL-PEARIA-FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGI 184 (294)
Q Consensus 109 l~~~~~~~-~~~~l~-i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~e~~~~~~~Ea~a~G~ 184 (294)
.+.++... +++.+. ++.. ..+..+...+..++. ...++.++++ ..|+++..+....-...+.+++..|+
T Consensus 15 ~~~~~~~~~~~~~v~~v~d~--~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~ 87 (120)
T PF01408_consen 15 HLRALLRSSPDFEVVAVCDP--DPERAEAFAEKYGIP-----VYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGK 87 (120)
T ss_dssp HHHHHHHTTTTEEEEEEECS--SHHHHHHHHHHTTSE-----EESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCcEEEEEEeC--CHHHHHHHHHHhccc-----chhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCC
Confidence 34444444 777665 3333 334445545555555 2245667777 67888887766666677889999999
Q ss_pred CEEeec
Q 022615 185 PVVGVR 190 (294)
Q Consensus 185 pvI~~~ 190 (294)
+|++-.
T Consensus 88 ~v~~EK 93 (120)
T PF01408_consen 88 HVLVEK 93 (120)
T ss_dssp EEEEES
T ss_pred EEEEEc
Confidence 999753
No 214
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=74.29 E-value=9.2 Score=32.47 Aligned_cols=134 Identities=15% Similarity=0.132 Sum_probs=69.9
Q ss_pred HHHHHHHHhCCCcEEEEEcCCccH------HHHHhhhcC--CCeEEE--ecccchhHHHHHhc----CCEEEeecCCC-C
Q 022615 107 DFLKRVMDRLPEARIAFIGDGPYR------EELEKMFTG--MPAVFT--GMLLGEELSQAYAS----GDVFVMPSESE-T 171 (294)
Q Consensus 107 ~~l~~~~~~~~~~~l~i~G~~~~~------~~~~~~~~~--~~v~~~--g~~~~~~~~~~~~~----ad~~l~ps~~e-~ 171 (294)
...++.+++.|+-+++++|-|-+- ..+.+...+ .|+.++ ..+...-+..+++. .|.+|.|.... -
T Consensus 125 ldAl~iA~~nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~I 204 (369)
T TIGR00075 125 MDALKIAKENPDRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVSTI 204 (369)
T ss_pred HHHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEEE
Confidence 445566677788888888866321 122222211 243332 23333556666655 48899998743 3
Q ss_pred cchHHHHHHh--cCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHH
Q 022615 172 LGLVVLEAMS--SGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWR 249 (294)
Q Consensus 172 ~~~~~~Ea~a--~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~ 249 (294)
.|...++.++ +|+|++++-. ++.++..+|..++..-..-+..-++.+.++-+..=+
T Consensus 205 ~G~~~y~~l~~~y~~P~VVaGF----------------------Ep~DiL~~i~~ll~qi~~g~~~v~N~Y~R~V~~eGN 262 (369)
T TIGR00075 205 IGAKPYAPIAEKYKIPIVIAGF----------------------EPVDILQAIYMLLKQAISGEAKVENQYKRAVKPEGN 262 (369)
T ss_pred eccchhHHHHHHcCCCeEEecc----------------------CHHHHHHHHHHHHHHHHCCCceEEEeeceeeCCccC
Confidence 5667777665 5788876522 455555555555432111111122333333233344
Q ss_pred HHHHHHHHHHHHH
Q 022615 250 AATRTIRNEQYNA 262 (294)
Q Consensus 250 ~~~~~~~~~l~~~ 262 (294)
..++++++++|+.
T Consensus 263 ~~Aq~~i~~vFe~ 275 (369)
T TIGR00075 263 VKAQKAIDEVFER 275 (369)
T ss_pred HHHHHHHHHHccc
Confidence 5566666666653
No 215
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=73.87 E-value=13 Score=22.39 Aligned_cols=59 Identities=27% Similarity=0.371 Sum_probs=38.6
Q ss_pred EEEEc-CCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 121 IAFIG-DGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 121 l~i~G-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+.+-| .+.++..+.+++...+-.+.+.++. ....+|. .+..+.+.-.|...|+|||..+
T Consensus 3 i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~--------~~THLI~---~~~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 3 ICFSGFSGKERSQLRKLIEALGGKYSKDLTK--------KTTHLIC---SSPEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp EEEEEB-TTTCCHHHHHHHCTT-EEESSSST--------T-SEEEE---ES--HHHHHHHHHCTSEEEEHH
T ss_pred EEECCCCHHHHHHHHHHHHHCCCEEeccccC--------CceEEEE---eCCCcHHHHHHHHCCCcEECCC
Confidence 34445 2445678888888877777777733 5566666 3456788999999999998753
No 216
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=73.13 E-value=3 Score=31.38 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=30.0
Q ss_pred HHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeec
Q 022615 28 KFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKK 64 (294)
Q Consensus 28 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~ 64 (294)
-|+...+|..++.|+.+++.+.+ .|+++++|.+.+-
T Consensus 132 ~W~~~~~D~y~Vase~~~~~l~~-~Gi~~~~I~vtGi 167 (169)
T PF06925_consen 132 FWIHPGVDRYFVASEEVKEELIE-RGIPPERIHVTGI 167 (169)
T ss_pred CeecCCCCEEEECCHHHHHHHHH-cCCChhHEEEeCc
Confidence 45678899999999999999998 5588888887653
No 217
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=72.86 E-value=8.8 Score=28.66 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=48.1
Q ss_pred hhHHHHHhcCCEEEeecC--CC----CcchHHHHHHhcCCCEEeecC-----CCcccccccCCCCcceee-cCCCCHHHH
Q 022615 151 EELSQAYASGDVFVMPSE--SE----TLGLVVLEAMSSGIPVVGVRA-----GGIPDIIPEDQDGKIGYL-FNPGDLDDC 218 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~--~e----~~~~~~~Ea~a~G~pvI~~~~-----~~~~e~~~~~~~~~~g~~-~~~~d~~~l 218 (294)
.-+...+..||+.+.--. .| .|.-.+=|.+-+++|+|++-. +...++ ......++ +++.+-+.+
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~i----k~~~~v~v~lt~~NR~~i 167 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRI----KKLGGVYVFLTPENRNRI 167 (179)
T ss_pred HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHh----hhcCCEEEEEccchhhHH
Confidence 346677788999997432 23 455556778899999998732 223333 33333344 788888888
Q ss_pred HHHHHHHhhC
Q 022615 219 LSKLEPLLYN 228 (294)
Q Consensus 219 ~~~i~~ll~~ 228 (294)
...|..+|..
T Consensus 168 ~~~Il~~L~~ 177 (179)
T COG1618 168 LNEILSVLKG 177 (179)
T ss_pred HHHHHHHhcc
Confidence 8888777654
No 218
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=72.47 E-value=28 Score=23.81 Aligned_cols=75 Identities=8% Similarity=0.170 Sum_probs=53.2
Q ss_pred cHHHHHHHHHhCCCcEEEEEcCC---ccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHH
Q 022615 105 SLDFLKRVMDRLPEARIAFIGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 180 (294)
Q Consensus 105 ~~~~l~~~~~~~~~~~l~i~G~~---~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~ 180 (294)
|.+.+.++++.- ++.++|+... ...+.+...++..+|.+..+.+.+|+...+....+.+..-..+++...+++.+
T Consensus 21 G~~~v~~aik~g-k~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk~~~~~iai~d~g~a~~l~~~~ 98 (104)
T PRK05583 21 GYNKCEEAIKKK-KVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDEIKILGVKDKNMAKKLLKLW 98 (104)
T ss_pred cHHHHHHHHHcC-CceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCCCCeEEEEEeChHHHHHHHHHH
Confidence 566777777764 5777777532 23566777666667766666788999999998777666666677777777655
No 219
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=71.29 E-value=28 Score=30.87 Aligned_cols=83 Identities=13% Similarity=0.035 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHhCCCcEEEEEc-----CCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHH
Q 022615 104 KSLDFLKRVMDRLPEARIAFIG-----DGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLE 178 (294)
Q Consensus 104 k~~~~l~~~~~~~~~~~l~i~G-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~E 178 (294)
+-...+-.|+.+.|...+.+-. .|.....+.++.....|+.+..- =.-..+++..|=+.+-+. ..-+|
T Consensus 167 ~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~~~r~~ll~ed--fnpisll~~~dkvy~~ts-----~mgfe 239 (671)
T COG3563 167 TFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQQHRVHLLAED--FNPISLLQNVDKVYCVTS-----QMGFE 239 (671)
T ss_pred HHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhccCceEEEeccc--CChHHHHHhcceeEEeec-----cccHH
Confidence 3455666788888876555432 12333344555445556554421 223478888886655442 23469
Q ss_pred HHhcCCCEEeecCCC
Q 022615 179 AMSSGIPVVGVRAGG 193 (294)
Q Consensus 179 a~a~G~pvI~~~~~~ 193 (294)
|+.||+|+++...+.
T Consensus 240 all~~~~~~~fg~p~ 254 (671)
T COG3563 240 ALLCGKPLTTFGLPW 254 (671)
T ss_pred HHhcCCceeeecchh
Confidence 999999999875543
No 220
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=70.98 E-value=9.5 Score=25.92 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=39.8
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHH-HHHhcCCCEEeecCCCccc
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIPVVGVRAGGIPD 196 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~-Ea~a~G~pvI~~~~~~~~e 196 (294)
+.++.++.... ...+ ..+.+.. .++.+.+..+++++...........+. ++-+.|+||-+.+.+...+
T Consensus 30 gA~v~vis~~~--~~~~-----~~i~~~~----~~~~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~~~d 98 (103)
T PF13241_consen 30 GAKVTVISPEI--EFSE-----GLIQLIR----REFEEDLDGADLVFAATDDPELNEAIYADARARGILVNVVDDPELCD 98 (103)
T ss_dssp TBEEEEEESSE--HHHH-----TSCEEEE----SS-GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CCCCS
T ss_pred CCEEEEECCch--hhhh-----hHHHHHh----hhHHHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcCCCe
Confidence 47777777644 2222 1233322 223344778888887765544444444 4455899999999888777
Q ss_pred cc
Q 022615 197 II 198 (294)
Q Consensus 197 ~~ 198 (294)
++
T Consensus 99 F~ 100 (103)
T PF13241_consen 99 FI 100 (103)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 221
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=70.22 E-value=16 Score=29.86 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=31.1
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
+++.++...+|+++-.+..+...-.+..++.+|+|+|+...+
T Consensus 60 ~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 60 DDLEAVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred CCHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 344444456899998877666667788999999999986544
No 222
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=70.21 E-value=47 Score=27.04 Aligned_cols=92 Identities=11% Similarity=0.155 Sum_probs=57.8
Q ss_pred cchhHHHHHhcCCEEEeecC-CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 149 LGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
+...-..-++.||+++.-.. .|++=.++++.. .+.+++....++..+ - .....-++.++.+...+++.|.+.+.
T Consensus 42 ~~p~d~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~~-~---~~~dPH~Wldp~n~~~~a~~I~~~L~ 116 (264)
T cd01020 42 PTPTDAAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHDD-K---EGDNPHLWYDPETMSKVANALADALV 116 (264)
T ss_pred CCHHHHHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeecccccC-C---CCCCCceecCHhHHHHHHHHHHHHHH
Confidence 33455677888999887653 566656666655 355565543332211 0 12344567778888888888888775
Q ss_pred --ChHHHHHHHHHHHHHHHh
Q 022615 228 --NQELRETMGQAARQEMEK 245 (294)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~ 245 (294)
||+......+++.++.++
T Consensus 117 ~~dP~~~~~y~~N~~~~~~~ 136 (264)
T cd01020 117 KADPDNKKYYQANAKKFVAS 136 (264)
T ss_pred HhCcccHHHHHHHHHHHHHH
Confidence 777666677777766544
No 223
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=69.87 E-value=51 Score=25.79 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=49.8
Q ss_pred ccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhh--cCCCeEEEecc-----------------cchhHHHHHh
Q 022615 102 VEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMF--TGMPAVFTGML-----------------LGEELSQAYA 158 (294)
Q Consensus 102 ~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~--~~~~v~~~g~~-----------------~~~~~~~~~~ 158 (294)
....+..|++.++.+ ...++.|+|.|.....+.... ...++.+.|.+ +.+++.++++
T Consensus 64 ~gy~v~~l~~~~~~~l~~~~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~ 143 (213)
T PRK05472 64 VGYNVEELLEFIEKILGLDRTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVK 143 (213)
T ss_pred CCeeHHHHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHH
Confidence 345667777766655 246788888876655544431 12233333332 2256777776
Q ss_pred c--CCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 159 S--GDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 159 ~--ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
. .|+++............-.+..+|+..|.+.
T Consensus 144 ~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~ 177 (213)
T PRK05472 144 ENDIEIGILTVPAEAAQEVADRLVEAGIKGILNF 177 (213)
T ss_pred HCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeec
Confidence 5 7877776543333333445666887666553
No 224
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=69.32 E-value=32 Score=29.02 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=55.7
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcC-CccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGD-GPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE 168 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~ 168 (294)
+.++.+|.- .-+-...+.++...++. +.+++- ....+..+...++.++. ...+++.++++. .|+++..+.
T Consensus 4 irvgiiG~G--~~~~~~~~~~~~~~~~~-~~~vav~d~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iatp 76 (342)
T COG0673 4 IRVGIIGAG--GIAGKAHLPALAALGGG-LELVAVVDRDPERAEAFAEEFGIA----KAYTDLEELLADPDIDAVYIATP 76 (342)
T ss_pred eEEEEEccc--HHHHHHhHHHHHhCCCc-eEEEEEecCCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEcCC
Confidence 345666632 11223456666776663 333332 24455566666666554 234678888887 478887765
Q ss_pred CCCcchHHHHHHhcCCCEEee
Q 022615 169 SETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
...-.-.+..|+..|++|++-
T Consensus 77 ~~~H~e~~~~AL~aGkhVl~E 97 (342)
T COG0673 77 NALHAELALAALEAGKHVLCE 97 (342)
T ss_pred ChhhHHHHHHHHhcCCEEEEc
Confidence 444444568999999999985
No 225
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=68.63 E-value=23 Score=30.18 Aligned_cols=40 Identities=8% Similarity=-0.006 Sum_probs=27.7
Q ss_pred hHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecC
Q 022615 152 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 152 ~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 191 (294)
+..+++..+|+++..+..+..--..-.+..+|++||.+..
T Consensus 71 ~~~el~~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 71 TIEDLLEKADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred ChhHhhccCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 4556667899999877544444445567888999987643
No 226
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.35 E-value=10 Score=31.34 Aligned_cols=206 Identities=14% Similarity=0.106 Sum_probs=106.5
Q ss_pred HHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecc--cccccHH
Q 022615 30 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL--GVEKSLD 107 (294)
Q Consensus 30 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~--~~~k~~~ 107 (294)
.-++|-.++.-...+.+.+.+.+ + +..-+.|.. .+-..|++...+.. ......+-+..|.- +-..++.
T Consensus 175 ~~rrc~~vf~rD~~Taq~L~~rg-v---na~~vGnpm-mD~L~p~~~~~q~l-----~~g~~viaLLPGsR~pea~~nl~ 244 (412)
T COG4370 175 LRRRCWAVFPRDALTAQHLANRG-V---NAAYVGNPM-MDGLPPPERDPQLL-----LTGVPVIALLPGSRVPEAQTNLA 244 (412)
T ss_pred hcccceeeeccccccHHHHHhcC-C---chhhccChh-hccCCCccCCchhh-----ccCCceEEecCCCCChHHHhhHH
Confidence 34677888888888888887754 3 334444432 12222322221111 12233445556654 3356677
Q ss_pred HHHHHHHhCCC-cEE-EEEcC---CccHHH------------HHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCC
Q 022615 108 FLKRVMDRLPE-ARI-AFIGD---GPYREE------------LEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 170 (294)
Q Consensus 108 ~l~~~~~~~~~-~~l-~i~G~---~~~~~~------------~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e 170 (294)
.++..+..++. ... ++.+. +-.... +.+...+.|.. -.++.+.+.+++..+|+.+--
T Consensus 245 ~il~slcal~~~~a~vvfw~ai~~~lpl~~l~~l~e~~gWq~~ad~~~kdnc~--l~lsqqsfadiLH~adaalgm---- 318 (412)
T COG4370 245 VILGSLCALPAMFALVVFWAAIAPELPLLLLWTLEERQGWQPLADRFGKDNCS--LWLSQQSFADILHAADAALGM---- 318 (412)
T ss_pred HHHHHHhhhHHHHHHHHHHhccCcCCCHHHHHHHHHhcCcchhhhhhccCceE--EEEeHHHHHHHHHHHHHHHHh----
Confidence 77775554432 111 22221 101111 11112222322 234568889999999986522
Q ss_pred CcchHHHHHHhcCCCEEeecCCCccccc---ccCCC---CcceeecCCCCHHHHHHHHH-HHhhChHHHHHHHHHHHHHH
Q 022615 171 TLGLVVLEAMSSGIPVVGVRAGGIPDII---PEDQD---GKIGYLFNPGDLDDCLSKLE-PLLYNQELRETMGQAARQEM 243 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~~~~~~e~~---~~~~~---~~~g~~~~~~d~~~l~~~i~-~ll~~~~~~~~~~~~~~~~~ 243 (294)
-|+..=.+...|+|||..+..+-. +. ...+. |..-.++. ...+-+..+. +++.|++..+.++.++++++
T Consensus 319 -AGTAtEQavGLGkPvi~fPg~GPQ-y~pgFA~rQ~rLLG~sltlv~--~~aq~a~~~~q~ll~dp~r~~air~nGqrRi 394 (412)
T COG4370 319 -AGTATEQAVGLGKPVIGFPGQGPQ-YNPGFAERQQRLLGASLTLVR--PEAQAAAQAVQELLGDPQRLTAIRHNGQRRI 394 (412)
T ss_pred -ccchHHHhhccCCceeecCCCCCC-cChHHHHHHHHHhcceeeecC--CchhhHHHHHHHHhcChHHHHHHHhcchhhc
Confidence 256667789999999997654321 11 00000 11222233 3334444444 48899999899998999887
Q ss_pred Hh-CCHHHHHHHH
Q 022615 244 EK-YDWRAATRTI 255 (294)
Q Consensus 244 ~~-~s~~~~~~~~ 255 (294)
-+ =.-.++++.+
T Consensus 395 GqaGaa~rIAe~l 407 (412)
T COG4370 395 GQAGAARRIAEEL 407 (412)
T ss_pred cCcchHHHHHHHH
Confidence 43 3344444444
No 227
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=68.31 E-value=15 Score=31.16 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=70.7
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCccH------HHHHhhhc--CCCeEEE--ecccchhHHHHHhc----CCEEEeecCCC-
Q 022615 106 LDFLKRVMDRLPEARIAFIGDGPYR------EELEKMFT--GMPAVFT--GMLLGEELSQAYAS----GDVFVMPSESE- 170 (294)
Q Consensus 106 ~~~l~~~~~~~~~~~l~i~G~~~~~------~~~~~~~~--~~~v~~~--g~~~~~~~~~~~~~----ad~~l~ps~~e- 170 (294)
....++.+++.|+-+++++|-|-+- ..+.+..+ -.|+.++ ..+...-+..++.. .|.+|.|....
T Consensus 118 pldAl~iA~~nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVst 197 (364)
T PRK15062 118 PLDALKIARENPDKEVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHVST 197 (364)
T ss_pred HHHHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEEEecCEeEE
Confidence 3445566677788888888866321 12222111 1243332 23333556666654 57889887743
Q ss_pred CcchHHHHHH--hcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCH
Q 022615 171 TLGLVVLEAM--SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDW 248 (294)
Q Consensus 171 ~~~~~~~Ea~--a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~ 248 (294)
-.|...++.+ -+|+|++++-. ++.++..+|..++..-+.-+..-++.+.++-+..=
T Consensus 198 I~G~~~y~~l~~~y~~P~VVaGF----------------------Ep~DiL~ai~~lv~q~~~g~~~v~N~Y~r~V~~eG 255 (364)
T PRK15062 198 IIGTEPYEFLAEEYGIPVVVAGF----------------------EPLDILQSILMLVRQLEEGRAEVENQYTRVVKEEG 255 (364)
T ss_pred EeccchhHHHHHHcCCCeEEecc----------------------CHHHHHHHHHHHHHHHHCCCceEEEccceeeCccc
Confidence 3566677766 45788876421 45555566655543221111112233333323334
Q ss_pred HHHHHHHHHHHHHHH
Q 022615 249 RAATRTIRNEQYNAA 263 (294)
Q Consensus 249 ~~~~~~~~~~l~~~~ 263 (294)
+..++++++++|+..
T Consensus 256 N~~A~~~i~~vFe~~ 270 (364)
T PRK15062 256 NLKAQELIAEVFEVR 270 (364)
T ss_pred CHHHHHHHHHHcCcC
Confidence 455666666666543
No 228
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=68.11 E-value=23 Score=21.12 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=40.6
Q ss_pred cEEEEEcC--CccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 119 ARIAFIGD--GPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 119 ~~l~i~G~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
..+.+.|. +..+..+.+++...+-.+...++ ..++.+|.+.... ......+...|+|+|..+
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~--------~~~thvI~~~~~~--~~~~~~~~~~~~~iV~~~ 65 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVS--------KKTTHVIVGSDAG--PKKLLKAIKLGIPIVTPE 65 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEecccc--------CCceEEEECCCCC--chHHHHHHHcCCeEecHH
Confidence 45777775 47778888888776655555443 4566777664322 222778889999998653
No 229
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=66.85 E-value=63 Score=25.66 Aligned_cols=122 Identities=7% Similarity=-0.075 Sum_probs=64.6
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH-HhcCCCEEeecCCCccc
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA-MSSGIPVVGVRAGGIPD 196 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea-~a~G~pvI~~~~~~~~e 196 (294)
+.++.++...- .+.++.+....++.+...-.. ...+..+++++..+........+.+. -+.|.+|.+.+.+...+
T Consensus 48 gA~VtVVap~i-~~el~~l~~~~~i~~~~r~~~---~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~d 123 (223)
T PRK05562 48 GCYVYILSKKF-SKEFLDLKKYGNLKLIKGNYD---KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGL 123 (223)
T ss_pred CCEEEEEcCCC-CHHHHHHHhCCCEEEEeCCCC---hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCe
Confidence 56777777543 344555665556665543211 23457788888776655555555444 46689998877766665
Q ss_pred ccccC--CCCcceeec-C----CCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Q 022615 197 IIPED--QDGKIGYLF-N----PGDLDDCLSKLEPLLYNQELRETMGQAARQEM 243 (294)
Q Consensus 197 ~~~~~--~~~~~g~~~-~----~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 243 (294)
++-+. ..+.--+.+ + |.=...+.+.|+.++.+-+.+.+.....+..+
T Consensus 124 Fi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~~~~l~~~l~~~R~~v 177 (223)
T PRK05562 124 CIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKKYDDFIEYVTKIRNKA 177 (223)
T ss_pred EEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55110 222221212 1 11234566666666644333444444444444
No 230
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=66.71 E-value=57 Score=25.63 Aligned_cols=77 Identities=16% Similarity=0.262 Sum_probs=50.6
Q ss_pred hhHHHHHh--cCCEEEeec-CCCCcchHHHHHHh-----cCCCEEee--cCCCcccccccCCCCcceeecCCCCHHHHHH
Q 022615 151 EELSQAYA--SGDVFVMPS-ESETLGLVVLEAMS-----SGIPVVGV--RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLS 220 (294)
Q Consensus 151 ~~~~~~~~--~ad~~l~ps-~~e~~~~~~~Ea~a-----~G~pvI~~--~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~ 220 (294)
++-..++. ..|+.++-- ..++-|+.++..+- +.+-+|+. +..-..+.+ +.|...+++.|-..+.+.+
T Consensus 36 ~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~al---r~Gv~DYLiKPf~~eRl~~ 112 (224)
T COG4565 36 EEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEAL---RYGVVDYLIKPFTFERLQQ 112 (224)
T ss_pred HHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHH---hcCchhheecceeHHHHHH
Confidence 45555555 557777653 36778888877765 33334432 334455666 6677888899999999999
Q ss_pred HHHHHhhChH
Q 022615 221 KLEPLLYNQE 230 (294)
Q Consensus 221 ~i~~ll~~~~ 230 (294)
+|.+...-..
T Consensus 113 aL~~y~~~r~ 122 (224)
T COG4565 113 ALTRYRQKRH 122 (224)
T ss_pred HHHHHHHHHH
Confidence 9988754433
No 231
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=66.08 E-value=13 Score=27.70 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=26.9
Q ss_pred HHHHHhc-CCEEEeecC------CCCcchHHHHHHhcCCCEEeec
Q 022615 153 LSQAYAS-GDVFVMPSE------SETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 153 ~~~~~~~-ad~~l~ps~------~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+...+.. +|++|+--. ..|+-..+.+|++.|+||++.-
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEE
Confidence 4444444 899887532 2355667899999999999873
No 232
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=65.97 E-value=35 Score=26.71 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=40.3
Q ss_pred EEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCC--------CCcc-----hHHHHHHhcCCCE
Q 022615 120 RIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES--------ETLG-----LVVLEAMSSGIPV 186 (294)
Q Consensus 120 ~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~--------e~~~-----~~~~Ea~a~G~pv 186 (294)
.+++.|+ ......+++....++.+.. .....||+++.|... -|.+ ..+++++..|+||
T Consensus 23 ~i~~~~~-~~~~i~e~~~~~~~i~~~~--------~~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V 93 (207)
T TIGR02536 23 YIVALGD-SKHAIPEEMLKEFDVSWVT--------SEQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPI 93 (207)
T ss_pred eEEEecC-CchhhHHHHHhhcceeecc--------hhhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeE
Confidence 3444444 3455555566665655433 255689999988542 1322 5589999999999
Q ss_pred EeecCC
Q 022615 187 VGVRAG 192 (294)
Q Consensus 187 I~~~~~ 192 (294)
++...+
T Consensus 94 ~v~~eg 99 (207)
T TIGR02536 94 YILKPG 99 (207)
T ss_pred EEEecc
Confidence 987643
No 233
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=64.46 E-value=62 Score=27.63 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=55.1
Q ss_pred CCceEEEeecccccccHHHHHHHHHhCC-CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe--e
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM--P 166 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~-~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~--p 166 (294)
++..++.+|. +. | ...++++...+ +++++-+.+ ...+..++..++.++. ...++.+++...|+.+. |
T Consensus 2 ~~~rVgViG~-~~--G-~~h~~al~~~~~~~eLvaV~d-~~~erA~~~A~~~gi~-----~y~~~eell~d~Di~~V~ip 71 (343)
T TIGR01761 2 DVQSVVVCGT-RF--G-QFYLAAFAAAPERFELAGILA-QGSERSRALAHRLGVP-----LYCEVEELPDDIDIACVVVR 71 (343)
T ss_pred CCcEEEEEeH-HH--H-HHHHHHHHhCCCCcEEEEEEc-CCHHHHHHHHHHhCCC-----ccCCHHHHhcCCCEEEEEeC
Confidence 3456778886 32 3 45778888887 677754443 2345555666655553 12566666776665544 3
Q ss_pred cC-CCCc-chHHHHHHhcCCCEEeec
Q 022615 167 SE-SETL-GLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 167 s~-~e~~-~~~~~Ea~a~G~pvI~~~ 190 (294)
+. ..+. .-...+++..|+.|++-.
T Consensus 72 t~~P~~~H~e~a~~aL~aGkHVL~EK 97 (343)
T TIGR01761 72 SAIVGGQGSALARALLARGIHVLQEH 97 (343)
T ss_pred CCCCCccHHHHHHHHHhCCCeEEEcC
Confidence 32 1222 344678999999999854
No 234
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=64.05 E-value=34 Score=25.78 Aligned_cols=61 Identities=10% Similarity=0.215 Sum_probs=40.0
Q ss_pred HHHHHHHh----CCCcEEEEEcCCcc-HHHHHhhhcCC--CeEEEecccchhHHHHHhcCCEEEeecCC
Q 022615 108 FLKRVMDR----LPEARIAFIGDGPY-REELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSES 169 (294)
Q Consensus 108 ~l~~~~~~----~~~~~l~i~G~~~~-~~~~~~~~~~~--~v~~~g~~~~~~~~~~~~~ad~~l~ps~~ 169 (294)
..+++++. +.+.++.|+|.|.. ...+.+.+... +|.+... ..+++.+.+..||+++.....
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r-~~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS-KTKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC-CchhHHHHHhhCCEEEEcCCC
Confidence 34444443 45789999999864 44344444433 3555554 347899999999999987643
No 235
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=60.94 E-value=14 Score=31.17 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=71.3
Q ss_pred CCCCceEEEeecccccc--------------------cHHHHHHHHHhCCCcEEEEEcCCccH------HHHHhhhc--C
Q 022615 88 EPDKPLIVHVGRLGVEK--------------------SLDFLKRVMDRLPEARIAFIGDGPYR------EELEKMFT--G 139 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~k--------------------~~~~l~~~~~~~~~~~l~i~G~~~~~------~~~~~~~~--~ 139 (294)
.....++..+|.+-..- .....++.+++.|+-.++++|-|-+- ..+.+..+ -
T Consensus 75 ~~~~vil~TfGDm~RVPGs~~SL~~ara~GadVriVySp~dAl~iA~~nP~k~vVF~avGFETTaP~~A~~i~~a~~~~~ 154 (355)
T PF01924_consen 75 KRPGVILATFGDMMRVPGSRGSLAEARAEGADVRIVYSPLDALKIAKENPDKEVVFFAVGFETTAPATAAAILQAKEEGI 154 (355)
T ss_dssp TT--EEEEE-TTGGG---TT--HHHHHHTT-EEEE-SSHHHHHHHHHH-TTSEEEEEEEE-HHHHHHHHHHHHHHHHHT-
T ss_pred CCCCeEEEeCcccccCCCCCCCHHHHHhCCCCEEEEeCHHHHHHHHHhCCCCceEEEEeCcccCcHHHHHHHHHHHHcCC
Confidence 34566778888662221 23445666677788888888866422 12222221 1
Q ss_pred CCeEE--EecccchhHHHHHhc----CCEEEeecCCC-CcchHHHHHHh--cCCCEEeecCCCcccccccCCCCcceeec
Q 022615 140 MPAVF--TGMLLGEELSQAYAS----GDVFVMPSESE-TLGLVVLEAMS--SGIPVVGVRAGGIPDIIPEDQDGKIGYLF 210 (294)
Q Consensus 140 ~~v~~--~g~~~~~~~~~~~~~----ad~~l~ps~~e-~~~~~~~Ea~a--~G~pvI~~~~~~~~e~~~~~~~~~~g~~~ 210 (294)
.|+.+ ...+...-+..++.. -|-+|.|.... -.|...++.++ +|+|++++..
T Consensus 155 ~Nfsvl~~hk~~ppal~~ll~~~~~~idGfi~PGHVs~I~G~~~y~~l~~~y~~P~vIaGF------------------- 215 (355)
T PF01924_consen 155 KNFSVLSSHKLTPPALEALLEDPELKIDGFICPGHVSTIIGSEPYEFLAEEYGIPCVIAGF------------------- 215 (355)
T ss_dssp SSEEEEEEEE-CHHHHHHHHHTT----SEEEEEHHHHHHHCCHHHHHHHHCC---EEEE-S-------------------
T ss_pred CCEEEEEeccccHHHHHHHHcCCCCCccEEEeCCeeeEEecchhhHHHHHHcCCCeEEcCC-------------------
Confidence 24333 333334556677765 47889997633 35777777765 5788876421
Q ss_pred CCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 022615 211 NPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 211 ~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~ 261 (294)
++.++..+|..++..-..-+..-++.+..+=+..=+..++++++++|+
T Consensus 216 ---Ep~diL~ai~~lv~qi~~g~~~v~N~Y~r~V~~eGN~~A~~~i~evFe 263 (355)
T PF01924_consen 216 ---EPLDILQAIYMLVKQINEGEAEVENQYPRVVKPEGNPKAQELINEVFE 263 (355)
T ss_dssp ---SHHHHHHHHHHHHHHHHTT---EEES-TTT--TT--HHHHHHHHHHEE
T ss_pred ---CHHHHHHHHHHHHHHHHCCCCeEEEecceeeCCccCHHHHHHHHHHhC
Confidence 566666777666532111111112222222223344556666655554
No 236
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=60.36 E-value=78 Score=28.25 Aligned_cols=111 Identities=27% Similarity=0.323 Sum_probs=68.0
Q ss_pred EEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhcC--CEEEeecC-CCCcchHHHHHHhc---CCCEEe-ecCC
Q 022615 121 IAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASG--DVFVMPSE-SETLGLVVLEAMSS---GIPVVG-VRAG 192 (294)
Q Consensus 121 l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a--d~~l~ps~-~e~~~~~~~Ea~a~---G~pvI~-~~~~ 192 (294)
++++-+... +..+.......+......-+-++..+.+... |++++-.+ .+.-|..+++.+.. +.|||. |..+
T Consensus 7 iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g 86 (464)
T COG2204 7 ILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHG 86 (464)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCC
Confidence 455554432 2334444444443333333336777776665 56665544 34556777766655 689875 4555
Q ss_pred CcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHH
Q 022615 193 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 231 (294)
Q Consensus 193 ~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~ 231 (294)
.....+..-+.|-..++..|.+++.+...+.+.+.....
T Consensus 87 ~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 87 DIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred CHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 544444333677788899999999999999999876443
No 237
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=59.59 E-value=1e+02 Score=25.52 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=64.0
Q ss_pred HHhCCeEEecchhhHHHHHHhccCCcCceEEeeccc-cCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHHHH
Q 022615 31 HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFL 109 (294)
Q Consensus 31 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l 109 (294)
-.+.|.|++.+......+.+... +.+-++..|+ |+... ...... ..++..+-+.. ....+..-
T Consensus 57 ~~~~DlIi~~gt~aa~~~~~~~~---~~iPVVf~~V~dp~~~-~l~~~~--------~~~~~nvTGv~----~~~~~~~~ 120 (294)
T PF04392_consen 57 AQKPDLIIAIGTPAAQALAKHLK---DDIPVVFCGVSDPVGA-GLVDSL--------DRPGKNVTGVS----ERPPIEKQ 120 (294)
T ss_dssp CTS-SEEEEESHHHHHHHHHH-S---S-S-EEEECES-TTTT-TS-S-S--------SS--SSEEEEE----E---HHHH
T ss_pred cCCCCEEEEeCcHHHHHHHHhcC---CCcEEEEEeccChhhh-hccccc--------cCCCCCEEEEE----CCcCHHHH
Confidence 35899999998877777776642 1266677777 33211 110000 11122222222 23344555
Q ss_pred HHHHHhC-CCc-EE-EEEcCCc-----cHHHHHhhhcCCCeEEE--ecccchhHHHHH----hcCCEEEeecC---CCCc
Q 022615 110 KRVMDRL-PEA-RI-AFIGDGP-----YREELEKMFTGMPAVFT--GMLLGEELSQAY----ASGDVFVMPSE---SETL 172 (294)
Q Consensus 110 ~~~~~~~-~~~-~l-~i~G~~~-----~~~~~~~~~~~~~v~~~--g~~~~~~~~~~~----~~ad~~l~ps~---~e~~ 172 (294)
++.++++ |++ ++ +++.... ..+.+++..+..++.+. ..-+.+++...+ ...|+++.+.. ...+
T Consensus 121 l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~ 200 (294)
T PF04392_consen 121 LELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSNF 200 (294)
T ss_dssp HHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTH
T ss_pred HHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhHH
Confidence 5555544 654 34 3343322 22344555555554432 223335555444 45687777643 2233
Q ss_pred chHHHHHHhcCCCEEeec
Q 022615 173 GLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 173 ~~~~~Ea~a~G~pvI~~~ 190 (294)
...+..+..+++||++..
T Consensus 201 ~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 201 EAILQLANEAKIPVFGSS 218 (294)
T ss_dssp HHHHHHCCCTT--EEESS
T ss_pred HHHHHHHHhcCCCEEECC
Confidence 344556677899999874
No 238
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=59.42 E-value=86 Score=24.68 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=30.4
Q ss_pred HHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 176 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 176 ~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
+++-.-.-.|+|..+.++..--... ......+-+++.+..+++.+|+--++..
T Consensus 178 ~L~d~l~ssPii~ge~g~a~~~~~a-~g~~f~fgvdp~~DPELAlALRlSMEEe 230 (259)
T KOG2884|consen 178 LLSDALLSSPIIQGEDGGAAAGLGA-NGMDFEFGVDPEDDPELALALRLSMEEE 230 (259)
T ss_pred cHHHHhhcCceeccCcccccccccc-cccccccCCCcccCHHHHHHHHhhHHHH
Confidence 5666667789998875433322200 1122334456667778888887655433
No 239
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=58.24 E-value=46 Score=26.86 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=52.8
Q ss_pred hHHHHHhcCCEEEeec-CCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh--C
Q 022615 152 ELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY--N 228 (294)
Q Consensus 152 ~~~~~~~~ad~~l~ps-~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~--~ 228 (294)
.-..-++.||+++.-. ..|++-.++.+........+..-..+....- .+...-++.++.+...+++.|.+.+. +
T Consensus 40 ~d~~~l~~Adlvv~~G~~~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~---~~~npH~Wldp~~~~~~~~~Ia~~L~~~~ 116 (256)
T PF01297_consen 40 SDIKKLQKADLVVYNGLGLEPWLEKLLESSQNPKVKVIDLSEGIDLDH---HGHNPHVWLDPENAKKMAEAIADALSELD 116 (256)
T ss_dssp HHHHHHHHSSEEEES-TTTSCCHHHHHHTTTTTTTEEEETTTTS-GST---TCBESTGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCEEEEeCCccchhhhhhhhcccccccceEEeeccccccc---CCCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 3446668899998865 4677766676555555555554333332211 11223355666677777777777664 7
Q ss_pred hHHHHHHHHHHHHHHH
Q 022615 229 QELRETMGQAARQEME 244 (294)
Q Consensus 229 ~~~~~~~~~~~~~~~~ 244 (294)
|+......+++.++.+
T Consensus 117 P~~~~~y~~N~~~~~~ 132 (256)
T PF01297_consen 117 PANKDYYEKNAEKYLK 132 (256)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHH
Confidence 7766666666666544
No 240
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=57.41 E-value=38 Score=28.37 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCcc------HHHHHhhhcC--CCeEE--EecccchhHHHHHhc---CCEEEeecCCC-C
Q 022615 106 LDFLKRVMDRLPEARIAFIGDGPY------REELEKMFTG--MPAVF--TGMLLGEELSQAYAS---GDVFVMPSESE-T 171 (294)
Q Consensus 106 ~~~l~~~~~~~~~~~l~i~G~~~~------~~~~~~~~~~--~~v~~--~g~~~~~~~~~~~~~---ad~~l~ps~~e-~ 171 (294)
+...++.+++.|+-.+++++-|-+ .-.+.+...+ .|+.+ ...+...-+..++.+ -|.++.|.... -
T Consensus 120 ~~dal~iA~enpdk~VVffaiGFETT~P~TA~~l~~~~~e~i~Nf~~ls~H~~~pPa~e~Ll~~~~~idafi~PGHVStI 199 (364)
T COG0409 120 PMDALKIAKENPDKKVVFFAIGFETTTPTTACMLLSAKGEGIENFFVLSNHRLLPPAVEALLESEVLIDAFLAPGHVSTI 199 (364)
T ss_pred HHHHHHHHhhCCCCceEEEeCccccCCCchHHHHHhccccccceEEEEEeceecCHHHHHHHhccccccceeccceeEEE
Confidence 344556667778888888775421 2223333222 13222 222333456666665 46677787643 3
Q ss_pred cchHHHHHHhc--CCCEEee
Q 022615 172 LGLVVLEAMSS--GIPVVGV 189 (294)
Q Consensus 172 ~~~~~~Ea~a~--G~pvI~~ 189 (294)
.|.+.+|.++- ++|+|++
T Consensus 200 iG~kpY~~la~ky~~P~VVa 219 (364)
T COG0409 200 IGTKPYEFLAEKYKFPIVVA 219 (364)
T ss_pred ecccccHHHHHhcCCCeEEe
Confidence 57888888887 6888865
No 241
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=56.21 E-value=63 Score=27.15 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=46.6
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCCCeEEEec----------ccchhHHHHHhcCCEEEe--ecCCC---CcchHHHHHHh
Q 022615 117 PEARIAFIGDGPYREELEKMFTGMPAVFTGM----------LLGEELSQAYASGDVFVM--PSESE---TLGLVVLEAMS 181 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~----------~~~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea~a 181 (294)
.+-++-|+|-|.-.+.+.+.++..+..+.++ +...++.++++.||++++ |...+ -++-..++.|-
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk 223 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLK 223 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCC
Confidence 4567888998887777777776554333322 122468999999998876 43333 24555666666
Q ss_pred cCCCEEee
Q 022615 182 SGIPVVGV 189 (294)
Q Consensus 182 ~G~pvI~~ 189 (294)
-|.-+|.+
T Consensus 224 ~~a~lIN~ 231 (311)
T PRK08410 224 DGAILINV 231 (311)
T ss_pred CCeEEEEC
Confidence 66555544
No 242
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=55.96 E-value=90 Score=26.43 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=48.4
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEeccc---c-----------hhHHHHHhcCCEEEe--ecCCCCc---chHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLL---G-----------EELSQAYASGDVFVM--PSESETL---GLVVLE 178 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~---~-----------~~~~~~~~~ad~~l~--ps~~e~~---~~~~~E 178 (294)
+.++-|+|-|.--..+.+.++..+....++=+ . +++.++++.||++.+ |...|+- +-..+.
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a 221 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELA 221 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHh
Confidence 45788999998888888888766544333322 1 459999999999876 5555543 555677
Q ss_pred HHhcCCCEEee
Q 022615 179 AMSSGIPVVGV 189 (294)
Q Consensus 179 a~a~G~pvI~~ 189 (294)
.|--|.-+|-.
T Consensus 222 ~MK~gailIN~ 232 (324)
T COG0111 222 KMKPGAILINA 232 (324)
T ss_pred hCCCCeEEEEC
Confidence 77666644433
No 243
>PRK06487 glycerate dehydrogenase; Provisional
Probab=55.03 E-value=56 Score=27.50 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=50.3
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEecc--------cchhHHHHHhcCCEEEe--ecCCC---CcchHHHHHHhcCC
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGML--------LGEELSQAYASGDVFVM--PSESE---TLGLVVLEAMSSGI 184 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~--------~~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea~a~G~ 184 (294)
+-++-|+|-|.-...+.+.++..+..+.++- ...++.++++.||++++ |...+ -++...+..|--|.
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga 227 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA 227 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence 4578899999888888888776654443321 22468999999999886 43322 35667777777776
Q ss_pred CEEeecCC
Q 022615 185 PVVGVRAG 192 (294)
Q Consensus 185 pvI~~~~~ 192 (294)
-+|.+.-|
T Consensus 228 ~lIN~aRG 235 (317)
T PRK06487 228 LLINTARG 235 (317)
T ss_pred EEEECCCc
Confidence 66655433
No 244
>PRK06932 glycerate dehydrogenase; Provisional
Probab=54.99 E-value=62 Score=27.21 Aligned_cols=76 Identities=11% Similarity=0.151 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCCCeEEEecc---------cchhHHHHHhcCCEEEe--ecCCC---CcchHHHHHHhc
Q 022615 117 PEARIAFIGDGPYREELEKMFTGMPAVFTGML---------LGEELSQAYASGDVFVM--PSESE---TLGLVVLEAMSS 182 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~---------~~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea~a~ 182 (294)
.+-++-|+|-|.-...+.+.++..+..+.++- ...++.++++.||++++ |...+ -++-..++.|--
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ 225 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKP 225 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCC
Confidence 34678899999888888887776654333221 12468899999999886 43333 356778888877
Q ss_pred CCCEEeecCC
Q 022615 183 GIPVVGVRAG 192 (294)
Q Consensus 183 G~pvI~~~~~ 192 (294)
|.-+|.+.-|
T Consensus 226 ga~lIN~aRG 235 (314)
T PRK06932 226 TAFLINTGRG 235 (314)
T ss_pred CeEEEECCCc
Confidence 7777765443
No 245
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=54.55 E-value=61 Score=26.67 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=58.2
Q ss_pred HHHHHHHHhCCCcEEEEE-cCCc-cHHHHHhhhcCCCeEEEeccc-chhHHHHHhc-CC-EEEeecCCCCcchHHHHHHh
Q 022615 107 DFLKRVMDRLPEARIAFI-GDGP-YREELEKMFTGMPAVFTGMLL-GEELSQAYAS-GD-VFVMPSESETLGLVVLEAMS 181 (294)
Q Consensus 107 ~~l~~~~~~~~~~~l~i~-G~~~-~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~-ad-~~l~ps~~e~~~~~~~Ea~a 181 (294)
...++++.. +++.|+=. .++. ..+.+.++.. ..+...|.-+ ..++..++.. +| ++|--|..+..-..+--+..
T Consensus 14 ~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g-~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~~~ 91 (275)
T TIGR02130 14 KAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAG-KEILLHGPSEREARIGEVFAKYPELICIDYTHPSAVNDNAAFYGK 91 (275)
T ss_pred HHHHHHHhc-CCCEEEeeEccccccccchhhhcc-cceeeeccccccccHHHHHhhcCCEEEEECCChHHHHHHHHHHHH
Confidence 456666666 77766643 1211 1112222211 1455543322 2677788877 89 88877776666556777889
Q ss_pred cCCCEEeecCCCcccccccC-CCCcceeecCCC
Q 022615 182 SGIPVVGVRAGGIPDIIPED-QDGKIGYLFNPG 213 (294)
Q Consensus 182 ~G~pvI~~~~~~~~e~~~~~-~~~~~g~~~~~~ 213 (294)
.|+|+|+...|...+-+... +....+.++.++
T Consensus 92 ~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apN 124 (275)
T TIGR02130 92 HGIPFVMGTTGGDREALAKLVADAKHPAVIAPN 124 (275)
T ss_pred CCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECc
Confidence 99999987776554443110 112355555543
No 246
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=54.29 E-value=1e+02 Score=24.06 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=61.3
Q ss_pred eEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC--
Q 022615 93 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-- 168 (294)
Q Consensus 93 ~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~-- 168 (294)
.++-+|+++..--++++++-...-+++.+.++|.|.. .+.++... .++.+-+ ..|++++-|-
T Consensus 6 g~ik~GniGts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav-------------~~~~e~~-~pDfvi~isPNp 71 (277)
T COG1927 6 GFIKCGNIGTSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAAV-------------TEMLEEF-NPDFVIYISPNP 71 (277)
T ss_pred EEEEecccchHHHHHHHHHhhcccCCceEEEeccccccChHHHHHHH-------------HHHHHhc-CCCEEEEeCCCC
Confidence 4667788877777777777766668999999998742 11111110 1222222 3466666443
Q ss_pred CCCcchHHHHHHh-cCCCEEe-ecCCCc--ccccccCCCCcceeecC
Q 022615 169 SETLGLVVLEAMS-SGIPVVG-VRAGGI--PDIIPEDQDGKIGYLFN 211 (294)
Q Consensus 169 ~e~~~~~~~Ea~a-~G~pvI~-~~~~~~--~e~~~~~~~~~~g~~~~ 211 (294)
.-..|.+.-|.++ +|+|.|. +|.++. .+-+ +..+-|+++-
T Consensus 72 aaPGP~kARE~l~~s~~PaiiigDaPg~~vkdel---eeqGlGYIiv 115 (277)
T COG1927 72 AAPGPKKAREILSDSDVPAIIIGDAPGLKVKDEL---EEQGLGYIIV 115 (277)
T ss_pred CCCCchHHHHHHhhcCCCEEEecCCccchhHHHH---HhcCCeEEEe
Confidence 4456777888887 6898654 555543 3444 4455666654
No 247
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=53.38 E-value=1.6e+02 Score=25.91 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=65.9
Q ss_pred CCceEEEeecccccccHHHHHHHHHh-CCCcEEEEEcCC-ccHHHHHhhhcCCCeEEEecccch---hHHHHHh--cCCE
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDR-LPEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGE---ELSQAYA--SGDV 162 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~-~~~~~l~i~G~~-~~~~~~~~~~~~~~v~~~g~~~~~---~~~~~~~--~ad~ 162 (294)
+..+.++..+++...-...+++.+++ .|++.+++.... .-.+...+..... ..+-++|.| -+...+. +-|+
T Consensus 49 ~p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~--v~h~YlP~D~~~~v~rFl~~~~P~l 126 (419)
T COG1519 49 GPLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDS--VIHQYLPLDLPIAVRRFLRKWRPKL 126 (419)
T ss_pred CCeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCC--eEEEecCcCchHHHHHHHHhcCCCE
Confidence 45678888999998888888887754 589888887643 3344444444433 233444444 3444443 3466
Q ss_pred EEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 163 FVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 163 ~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+|+ ...|-+|+.+.|+-..|+|++.-+
T Consensus 127 ~Ii-~EtElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 127 LII-METELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred EEE-EeccccHHHHHHHHHcCCCEEEEe
Confidence 654 346889999999999999987643
No 248
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.49 E-value=1.4e+02 Score=25.02 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=57.8
Q ss_pred CCceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCC--CeEEEecccchhHHHHHhc-CCEEEee
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM--PAVFTGMLLGEELSQAYAS-GDVFVMP 166 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~--~v~~~g~~~~~~~~~~~~~-ad~~l~p 166 (294)
++-.|++.-.+.-......+-..+..+ +++ ++....+.++-+..-.+.. .+-+--.+++..+..++.. +|..+.|
T Consensus 20 ~r~~IGiPRvLn~ye~yPff~tffteL-Gf~-VVlS~~S~kely~~G~~ti~sevCfPaki~HGHi~~L~~K~~d~IFyP 97 (351)
T COG3580 20 GRGTIGIPRVLNMYEYYPFFHTFFTEL-GFR-VVLSPKSSKELYEKGIETIPSEVCFPAKISHGHIMDLIKKGIDYIFYP 97 (351)
T ss_pred CcceecchHHHHHhhccHHHHHHHHHc-Cce-EEeCCCCcHHHHHhhhhhCCccceeceeechhHHHHHHHcCCCeEEec
Confidence 444566665555556666666666666 556 3334444444444333322 2666667788888999988 9999999
Q ss_pred cCCCCcchHHHHHHhcCCCEEee
Q 022615 167 SESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 167 s~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
+.....+.- .+--...||+|++
T Consensus 98 ~l~~~~~E~-~a~n~~~CP~V~~ 119 (351)
T COG3580 98 CLRYIKSEQ-SANNHYNCPIVQS 119 (351)
T ss_pred ccccccccc-cccccccCccccC
Confidence 864333322 2223345787775
No 249
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=52.41 E-value=64 Score=23.65 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=42.1
Q ss_pred cchhHHHHHhcCCEEEeecC--CCCcchHHHHHHhcCCCEEee--cCCCcccccccC-CCCcceeecCCCCHHHHHHHHH
Q 022615 149 LGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGV--RAGGIPDIIPED-QDGKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~--~~~~~~e~~~~~-~~~~~g~~~~~~d~~~l~~~i~ 223 (294)
+..+..+++..||+++.... ..+.=-.+++....+.+++.. ..+..++.+... -+.-.|..+. |++.+.+.+.
T Consensus 52 ~~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~--d~~~~~~~i~ 129 (147)
T PF04016_consen 52 PDEDAEEILPWADVVIITGSTLVNGTIDDILELARNAREVILYGPSAPLHPEALFDYGVTYVGGSRVV--DPEKVLRAIS 129 (147)
T ss_dssp EGGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES---HHHHHHHHC
T ss_pred CHHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecCchhhHHHHHhCCCCEEEEEEEe--CHHHHHHHHH
Confidence 56789999999999998743 334444566666666776653 344555555110 1112344444 7777777664
Q ss_pred H
Q 022615 224 P 224 (294)
Q Consensus 224 ~ 224 (294)
+
T Consensus 130 ~ 130 (147)
T PF04016_consen 130 E 130 (147)
T ss_dssp T
T ss_pred c
Confidence 3
No 250
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=52.31 E-value=1.1e+02 Score=23.89 Aligned_cols=88 Identities=16% Similarity=0.265 Sum_probs=49.5
Q ss_pred cHHHHHHHHHhC--CCcEEEEEcCCcc-----HHHHHhhhcCC-C--eEEEecccchhHHHHHhcCCEEEeecCC-----
Q 022615 105 SLDFLKRVMDRL--PEARIAFIGDGPY-----REELEKMFTGM-P--AVFTGMLLGEELSQAYASGDVFVMPSES----- 169 (294)
Q Consensus 105 ~~~~l~~~~~~~--~~~~l~i~G~~~~-----~~~~~~~~~~~-~--v~~~g~~~~~~~~~~~~~ad~~l~ps~~----- 169 (294)
+.+.+.+.+... ++.++.++...+. ...+.+..... + +..+...+.++..+.+..||++++|.-.
T Consensus 16 ~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~ 95 (212)
T cd03146 16 ALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLL 95 (212)
T ss_pred chHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHH
Confidence 455555555555 3567777764321 12233333334 3 2223223346778899999999998521
Q ss_pred -----CCcchHHHHHHhcCCCEEeecCC
Q 022615 170 -----ETLGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 170 -----e~~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
-++-..+-++...|+|++.+..|
T Consensus 96 ~~l~~~~l~~~l~~~~~~g~~i~G~SAG 123 (212)
T cd03146 96 AQWREHGLDAILKAALERGVVYIGWSAG 123 (212)
T ss_pred HHHHHcCHHHHHHHHHHCCCEEEEECHh
Confidence 12333455666789999876554
No 251
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=51.54 E-value=1.7e+02 Score=25.87 Aligned_cols=139 Identities=13% Similarity=0.185 Sum_probs=81.0
Q ss_pred ccHHHHHHHHHHhCCeEEecc--hhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHH---HHhhc-C-CCCCce
Q 022615 21 KPMWLVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMR---WRLSN-G-EPDKPL 93 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~s--~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~---~~~~~-~-~~~~~~ 93 (294)
-.++-..+.+-+.+|.|++=. ....+.+.+.- .+-|| |+-|-+..+|...-.+.. ...+. . .-+...
T Consensus 170 ESi~DTarvLs~y~D~IviR~~~~~~~~e~A~~s-----~vPVI-NAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~k 243 (429)
T PRK11891 170 ESIYDTSRVMSGYVDALVIRHPEQGSVAEFARAT-----NLPVI-NGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAH 243 (429)
T ss_pred CCHHHHHHHHHHhCCEEEEeCCchhHHHHHHHhC-----CCCEE-ECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCE
Confidence 335566777888899988843 33445554432 33344 555545566643322211 11110 1 123578
Q ss_pred EEEeecccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 94 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 94 i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
|+|+|.....+-...++.++..+.++.+.+++...+ .+.+.+.+...+..+. . .+++.+.++.||++...+.
T Consensus 244 Ia~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~-~--~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 244 IALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIE-Q--TDDLAAGLRGADVVYATRI 317 (429)
T ss_pred EEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEE-E--EcCHHHHhCCCCEEEEcCc
Confidence 999998755566777888877777889999985432 2333333333221111 1 2788899999999887553
No 252
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=51.44 E-value=86 Score=22.87 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=38.6
Q ss_pred CCceEEEeecccccccHHHHHHHHHh-CCCcEEEEEcCCccHHHHHhhhcC-CCeEEEe
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDR-LPEARIAFIGDGPYREELEKMFTG-MPAVFTG 146 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~-~~~~~l~i~G~~~~~~~~~~~~~~-~~v~~~g 146 (294)
..++++.+..-+.......++..+++ +|+-++++.|-|-....++++.+. .|+.+..
T Consensus 60 ~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~ 118 (142)
T PF07801_consen 60 SDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRK 118 (142)
T ss_pred CccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEE
Confidence 44555555555555555666666654 599999999988877888777665 5665543
No 253
>PLN02527 aspartate carbamoyltransferase
Probab=51.23 E-value=1.5e+02 Score=24.93 Aligned_cols=139 Identities=14% Similarity=0.189 Sum_probs=80.8
Q ss_pred ccHHHHHHHHHHhCCeEEec--chhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHH-hhcCCCCCceEEEe
Q 022615 21 KPMWLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR-LSNGEPDKPLIVHV 97 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 97 (294)
-..+-..+.+-+.+|.|++= +....+.+.+.- .+-|| |+-+-...+|...-.+...- ...+.-+...|.|+
T Consensus 84 Es~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~-----~vPVI-Na~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~v 157 (306)
T PLN02527 84 ETLEDTIRTVEGYSDIIVLRHFESGAARRAAATA-----EIPVI-NAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLV 157 (306)
T ss_pred cCHHHHHHHHHHhCcEEEEECCChhHHHHHHHhC-----CCCEE-ECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEE
Confidence 34556677888889998884 344445554432 33344 44443345554322221111 11122345789999
Q ss_pred ecccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 98 GRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 98 G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
|.....+-...++.++..+.++.+.+++...+ .+.+.+.+++.+..+. -.+++.+.++.||++.....
T Consensus 158 GD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~---~~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 158 GDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWE---ESSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEE---EEcCHHHHhCCCCEEEECCc
Confidence 97654455777888888887899999985332 2334444433332221 12778899999999887543
No 254
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.99 E-value=1.4e+02 Score=24.72 Aligned_cols=78 Identities=10% Similarity=0.194 Sum_probs=49.3
Q ss_pred HHHHHHHHhC----CCcEEEEEcCCcc-HHHHHhhhcCCC--eEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH
Q 022615 107 DFLKRVMDRL----PEARIAFIGDGPY-REELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 107 ~~l~~~~~~~----~~~~l~i~G~~~~-~~~~~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea 179 (294)
.-+++.++.+ .+-+++++|.+.. ..-+..++...+ |+....- ..++.++.+.||+++......++ .--|.
T Consensus 143 ~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-t~~l~~~~~~ADIVV~avG~~~~--i~~~~ 219 (285)
T PRK14189 143 YGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-TRDLAAHTRQADIVVAAVGKRNV--LTADM 219 (285)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-CCCHHHHhhhCCEEEEcCCCcCc--cCHHH
Confidence 3445555544 5689999998765 444555544443 5444332 25799999999999987654443 12377
Q ss_pred HhcCCCEE
Q 022615 180 MSSGIPVV 187 (294)
Q Consensus 180 ~a~G~pvI 187 (294)
+--|.-||
T Consensus 220 ik~gavVI 227 (285)
T PRK14189 220 VKPGATVI 227 (285)
T ss_pred cCCCCEEE
Confidence 77786555
No 255
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=50.99 E-value=90 Score=22.36 Aligned_cols=94 Identities=20% Similarity=0.163 Sum_probs=53.7
Q ss_pred CCCceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhh--cCCCeEEEecccchhHHHHHh--cCCEEE
Q 022615 89 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMF--TGMPAVFTGMLLGEELSQAYA--SGDVFV 164 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~--~~~~v~~~g~~~~~~~~~~~~--~ad~~l 164 (294)
++++.+.-... .++++.|.+.++++ +.+.+++.+....+.+++.. ...++.+..-. +.+.++.. .+|+++
T Consensus 22 ~d~f~v~~Lsa---~~n~~~L~~q~~~f-~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~--~~l~~~~~~~~~D~vv 95 (129)
T PF02670_consen 22 PDKFEVVALSA---GSNIEKLAEQAREF-KPKYVVIADEEAYEELKKALPSKGPGIEVLSGP--EGLEELAEEPEVDIVV 95 (129)
T ss_dssp TTTEEEEEEEE---SSTHHHHHHHHHHH-T-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH--HHHHHHHTHTT-SEEE
T ss_pred CCceEEEEEEc---CCCHHHHHHHHHHh-CCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh--HHHHHHhcCCCCCEEE
Confidence 34554443332 57888888888887 44556666544455555554 33455544433 66777766 678888
Q ss_pred eecCCCCcchHHHHHHhcCCCEEe
Q 022615 165 MPSESETLGLVVLEAMSSGIPVVG 188 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~G~pvI~ 188 (294)
.....-..=.+.++|+..|+-+..
T Consensus 96 ~Ai~G~aGL~pt~~Ai~~gk~iaL 119 (129)
T PF02670_consen 96 NAIVGFAGLKPTLAAIKAGKDIAL 119 (129)
T ss_dssp E--SSGGGHHHHHHHHHTTSEEEE
T ss_pred EeCcccchHHHHHHHHHCCCeEEE
Confidence 765422222346789999977643
No 256
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=50.96 E-value=57 Score=26.70 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=38.1
Q ss_pred HHHHHhcCCEEEe-ecCCCCcchHHHHHHhcCCCEEee----cCCCcccccccCCCCcceeecCCCCHHHH
Q 022615 153 LSQAYASGDVFVM-PSESETLGLVVLEAMSSGIPVVGV----RAGGIPDIIPEDQDGKIGYLFNPGDLDDC 218 (294)
Q Consensus 153 ~~~~~~~ad~~l~-ps~~e~~~~~~~Ea~a~G~pvI~~----~~~~~~e~~~~~~~~~~g~~~~~~d~~~l 218 (294)
-.+-+..||+++. .|+..-.|++++=|+ .|.-|.-- +.+--.++.+-+...-.|+.+++.-..++
T Consensus 137 ~~~~l~~ADIiLvGVSRtsKTPlS~YLA~-~G~KvAN~PLvpe~~lP~~L~~~~~~kivGLtIdp~rL~~I 206 (269)
T PRK05339 137 DPRGLDEADVILVGVSRTSKTPTSLYLAN-KGIKAANYPLVPEVPLPEELFPIDPKKIFGLTIDPERLIEI 206 (269)
T ss_pred CcCCcccCCEEEECcCCCCCcHHHHHHHc-cCCceEeeCCCCCCCCCHHHHhCCCCcEEEEeCCHHHHHHH
Confidence 4456788998887 588888999999898 77655432 22222333321111335776654433333
No 257
>PLN02928 oxidoreductase family protein
Probab=50.62 E-value=70 Score=27.38 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=46.0
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCCC--eEEEec------------------------ccchhHHHHHhcCCEEEe--ecC
Q 022615 117 PEARIAFIGDGPYREELEKMFTGMP--AVFTGM------------------------LLGEELSQAYASGDVFVM--PSE 168 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~------------------------~~~~~~~~~~~~ad~~l~--ps~ 168 (294)
.+-++-|+|-|.-...+.+.+...+ |..... .+..++.++++.||++++ |..
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt 237 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLT 237 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCC
Confidence 3468889998887777777666554 333221 123468899999999886 333
Q ss_pred CC---CcchHHHHHHhcCCCEEee
Q 022615 169 SE---TLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 169 ~e---~~~~~~~Ea~a~G~pvI~~ 189 (294)
.+ -++-..+..|--|.-+|..
T Consensus 238 ~~T~~li~~~~l~~Mk~ga~lINv 261 (347)
T PLN02928 238 KETAGIVNDEFLSSMKKGALLVNI 261 (347)
T ss_pred hHhhcccCHHHHhcCCCCeEEEEC
Confidence 22 2455667777666655544
No 258
>PLN02929 NADH kinase
Probab=50.39 E-value=55 Score=27.31 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=44.2
Q ss_pred HHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC-----cccccc-cCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 153 LSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG-----IPDIIP-EDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 153 ~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~-----~~e~~~-~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
+......+|+++.-. .+|.=+.....+..++||+.-+.+. ..++.. .+..+..|++... +++++.+.|.+++
T Consensus 58 ~~~~~~~~Dlvi~lG-GDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~-~~~~~~~~L~~il 135 (301)
T PLN02929 58 LSQPIRDVDLVVAVG-GDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAA-TAEDFEQVLDDVL 135 (301)
T ss_pred cccccCCCCEEEEEC-CcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccccCccccccC-CHHHHHHHHHHHH
Confidence 344556789887653 2333333333355679999877762 111110 0123467887775 5788999999988
Q ss_pred hC
Q 022615 227 YN 228 (294)
Q Consensus 227 ~~ 228 (294)
+.
T Consensus 136 ~g 137 (301)
T PLN02929 136 FG 137 (301)
T ss_pred cC
Confidence 65
No 259
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=49.80 E-value=63 Score=26.34 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=44.2
Q ss_pred HHHHHHhCC-CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEE
Q 022615 109 LKRVMDRLP-EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 187 (294)
Q Consensus 109 l~~~~~~~~-~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI 187 (294)
+.+.+...+ ++++..+-+ ...+..++.....++.. .+++.+++..+|+++.....+...--..+++..|+.++
T Consensus 16 ia~~l~~~~~~~elv~v~d-~~~~~a~~~a~~~~~~~-----~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vv 89 (265)
T PRK13304 16 ITKAILSGRINAELYAFYD-RNLEKAENLASKTGAKA-----CLSIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVI 89 (265)
T ss_pred HHHHHHcCCCCeEEEEEEC-CCHHHHHHHHHhcCCee-----ECCHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEE
Confidence 444444432 555443333 33344444444333221 24566666889999887654444445667888999998
Q ss_pred eecCC
Q 022615 188 GVRAG 192 (294)
Q Consensus 188 ~~~~~ 192 (294)
+...+
T Consensus 90 v~s~g 94 (265)
T PRK13304 90 IMSVG 94 (265)
T ss_pred EEchH
Confidence 86543
No 260
>PRK07579 hypothetical protein; Provisional
Probab=49.43 E-value=44 Score=26.95 Aligned_cols=32 Identities=6% Similarity=0.118 Sum_probs=19.7
Q ss_pred eEEEeecccccccHHHHHHHHHhCCCcEEEEEcC
Q 022615 93 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGD 126 (294)
Q Consensus 93 ~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~ 126 (294)
.|++.|.- .-+...+..++.+-.+..+.+++.
T Consensus 3 ~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 34 (245)
T PRK07579 3 TILVLTDN--VHAHALAVDLIARKNDMDVDYFCS 34 (245)
T ss_pred eEEEEccc--HHHHHHHHHHHhhccCcceEEEEe
Confidence 35666632 345666667777666777766664
No 261
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=49.16 E-value=1.4e+02 Score=23.96 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=30.3
Q ss_pred hhHHHHHhcCCEEEeecC----------CCCcchHHHHHHhcCCCEEeecCCC
Q 022615 151 EELSQAYASGDVFVMPSE----------SETLGLVVLEAMSSGIPVVGVRAGG 193 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~----------~e~~~~~~~Ea~a~G~pvI~~~~~~ 193 (294)
++..+.+..||+++++.- ..++-..+-|++..|+|++.+..|.
T Consensus 71 ~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 71 ADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred hhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 566788999998777632 1234445678899999998876553
No 262
>PRK10637 cysG siroheme synthase; Provisional
Probab=48.96 E-value=2e+02 Score=25.76 Aligned_cols=77 Identities=12% Similarity=-0.012 Sum_probs=47.7
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH-HhcCCCEEeecCCCccc
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA-MSSGIPVVGVRAGGIPD 196 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea-~a~G~pvI~~~~~~~~e 196 (294)
+.++.++... ..+.+.++....++.+...- -....+..+++++..+..+.....+.+. -+.|++|-+.|.+...+
T Consensus 35 ga~v~visp~-~~~~~~~l~~~~~i~~~~~~---~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~ 110 (457)
T PRK10637 35 GARLTVNALA-FIPQFTAWADAGMLTLVEGP---FDESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAAS 110 (457)
T ss_pred CCEEEEEcCC-CCHHHHHHHhCCCEEEEeCC---CChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCe
Confidence 4566666543 33455666665566655432 1235567888877776655565555444 47799998888776666
Q ss_pred cc
Q 022615 197 II 198 (294)
Q Consensus 197 ~~ 198 (294)
++
T Consensus 111 f~ 112 (457)
T PRK10637 111 FI 112 (457)
T ss_pred EE
Confidence 65
No 263
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=48.33 E-value=1.5e+02 Score=24.26 Aligned_cols=140 Identities=17% Similarity=0.117 Sum_probs=67.9
Q ss_pred eEEEeecccccccHHHHHHHHHhCCC-cEEEEEcCCccHHHHHhh-hc--CCCeEEEecccchh-HHHHHhc-CCEEEee
Q 022615 93 LIVHVGRLGVEKSLDFLKRVMDRLPE-ARIAFIGDGPYREELEKM-FT--GMPAVFTGMLLGEE-LSQAYAS-GDVFVMP 166 (294)
Q Consensus 93 ~i~~~G~~~~~k~~~~l~~~~~~~~~-~~l~i~G~~~~~~~~~~~-~~--~~~v~~~g~~~~~~-~~~~~~~-ad~~l~p 166 (294)
.+++++.-.+.+.++.+++..+..|+ +.+-..|.|......... .+ ..++.+.++-...+ +..++.. .|+.+..
T Consensus 80 ~vl~v~~dsp~~t~~eli~~ak~~p~~~~~g~~g~g~~~hl~~~~l~~~~G~~~~~Vpy~G~~~~~~allgG~vd~~~~~ 159 (274)
T PF03401_consen 80 NVLVVRADSPYKTLEELIEYAKANPGKLTFGSSGPGSSDHLAAALLAKAAGIKFTHVPYDGGAEALTALLGGHVDAAFGS 159 (274)
T ss_dssp EEEEEETTSS-SSHHHHHHHHHCSCCC-EEEESSTTSHHHHHHHHHHHHHT---EEEE-SSHHHHHHHHHTTSSSEEEEE
T ss_pred eEEEEeCCCccccHHHHHHHHHhCCCCeEEEecCCCchHHHHHHHHHHHhCCceEEEEeCCccHHHHHHhCCeeeEEeec
Confidence 45666666888999999999998874 666666665543322222 22 22455555544434 4444443 4555432
Q ss_pred cCCCCcchHHHHHHhcCCC--EEeec---CCCccc---ccc-----cCCCCcceeecCCCCHHHHHHHHHHH----hhCh
Q 022615 167 SESETLGLVVLEAMSSGIP--VVGVR---AGGIPD---IIP-----EDQDGKIGYLFNPGDLDDCLSKLEPL----LYNQ 229 (294)
Q Consensus 167 s~~e~~~~~~~Ea~a~G~p--vI~~~---~~~~~e---~~~-----~~~~~~~g~~~~~~d~~~l~~~i~~l----l~~~ 229 (294)
......++..|.- +.++. .+.+++ +-. .......|++.+.+.+++..+.+..+ ++++
T Consensus 160 ------~~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gtp~~~~~~l~~a~~~~~~~p 233 (274)
T PF03401_consen 160 ------PGEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGTPDEIVDKLADAIKKALEDP 233 (274)
T ss_dssp ------HHHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS-HHHHHHHHHHHHHHHT-H
T ss_pred ------HHHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCCCHHHHHHHHHHHHHHhCCH
Confidence 2234556666632 22211 111111 110 00223467777888777666555554 4577
Q ss_pred HHHHHHHHH
Q 022615 230 ELRETMGQA 238 (294)
Q Consensus 230 ~~~~~~~~~ 238 (294)
+..+.+.+.
T Consensus 234 e~~~~~~~~ 242 (274)
T PF03401_consen 234 EFQEFLEKM 242 (274)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
Confidence 655544443
No 264
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=48.01 E-value=77 Score=25.76 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=28.0
Q ss_pred chhHHHHHhcCCEEEe-ecCCCCcchHHHHHHhcCCCEE
Q 022615 150 GEELSQAYASGDVFVM-PSESETLGLVVLEAMSSGIPVV 187 (294)
Q Consensus 150 ~~~~~~~~~~ad~~l~-ps~~e~~~~~~~Ea~a~G~pvI 187 (294)
+..-.+-+..||++++ .|+..-.|++++=|+ .|.-|.
T Consensus 128 DG~~~~~l~~ADivLvGVSRtsKTPlS~YLA~-~G~KvA 165 (255)
T PF03618_consen 128 DGKNPRGLDEADIVLVGVSRTSKTPLSMYLAN-KGYKVA 165 (255)
T ss_pred CCCCccccccCCEEEEcccccCCCchhHHHHh-cCccee
Confidence 3344566788998887 578888999999888 776554
No 265
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=47.82 E-value=1.2e+02 Score=24.99 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=54.6
Q ss_pred chhHHHHHhcCCEEEeecC-CCCcchHHHHHHhcCCCEEeecCC-CcccccccCC--CCcceeecCCCCHHHHHHHHHHH
Q 022615 150 GEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAG-GIPDIIPEDQ--DGKIGYLFNPGDLDDCLSKLEPL 225 (294)
Q Consensus 150 ~~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~G~pvI~~~~~-~~~e~~~~~~--~~~~g~~~~~~d~~~l~~~i~~l 225 (294)
...-..-++.||+++.-.. .|++-.++++....+.++|....+ .......... +...-++.++.....+++.|.+.
T Consensus 41 ~p~d~~~l~~Adliv~~G~~~E~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~ 120 (276)
T cd01016 41 TAGDVEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIALEDTLDRSQLILDEEEGTYDPHIWFDVKLWKYAVKAVAEV 120 (276)
T ss_pred CHHHHHHHHhCCEEEEcCcChHHHHHHHHHHhccCCceEEeccCcCcccccccccCCCCCCCcccCHHHHHHHHHHHHHH
Confidence 3445567788899887653 577777777776444455543222 1111110000 11344556666777788888777
Q ss_pred hh--ChHHHHHHHHHHHHHHHh
Q 022615 226 LY--NQELRETMGQAARQEMEK 245 (294)
Q Consensus 226 l~--~~~~~~~~~~~~~~~~~~ 245 (294)
+. +|+......+++..+.++
T Consensus 121 L~~~dP~~~~~y~~N~~~~~~~ 142 (276)
T cd01016 121 LSEKLPEHKDEFQANSEAYVEE 142 (276)
T ss_pred HHHHCcccHHHHHHHHHHHHHH
Confidence 64 676666666666665443
No 266
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=47.19 E-value=1.4e+02 Score=25.31 Aligned_cols=75 Identities=12% Similarity=0.022 Sum_probs=43.4
Q ss_pred HHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEe
Q 022615 109 LKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 188 (294)
Q Consensus 109 l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~ 188 (294)
..+++...+++.++-+-+....+.+. ... +.....+...++...|++++..-...-.-.+.++++.|+.||+
T Consensus 18 ~a~al~~~pd~ELVgV~dr~~~~~~~---~~~-----~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~~L~aG~NVV~ 89 (324)
T TIGR01921 18 VEKAIQQQPDMELVGVFSRRGAETLD---TET-----PVYAVADDEKHLDDVDVLILCMGSATDIPEQAPYFAQFANTVD 89 (324)
T ss_pred HHHHHHhCCCcEEEEEEcCCcHHHHh---hcC-----CccccCCHHHhccCCCEEEEcCCCccCHHHHHHHHHcCCCEEE
Confidence 45677777887766443332212222 111 1122234555668899998754322334556788999999999
Q ss_pred ecC
Q 022615 189 VRA 191 (294)
Q Consensus 189 ~~~ 191 (294)
+..
T Consensus 90 s~~ 92 (324)
T TIGR01921 90 SFD 92 (324)
T ss_pred CCC
Confidence 843
No 267
>PRK07714 hypothetical protein; Provisional
Probab=46.79 E-value=88 Score=21.08 Aligned_cols=76 Identities=8% Similarity=0.097 Sum_probs=48.1
Q ss_pred cccHHHHHHHHHhCCCcEEEEEcC-Cc--cHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH
Q 022615 103 EKSLDFLKRVMDRLPEARIAFIGD-GP--YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 103 ~k~~~~l~~~~~~~~~~~l~i~G~-~~--~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea 179 (294)
..|.+...+++++- +++++|+.. .+ ..+.+...+...+|.+....+.+|+...+......+..-...++.-.+++.
T Consensus 20 v~G~~~v~~al~~g-~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eLG~a~Gk~~~~~vai~d~g~a~~l~~~ 98 (100)
T PRK07714 20 ISGEELVLKEVRSG-KAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQLGHAIGKDERVVVAVLDEGFAKKLRSM 98 (100)
T ss_pred eecHHHHHHHHHhC-CceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCcceEEEEeCchhHHHHHHH
Confidence 34677888888764 567777653 22 345666666666666666667799999988764444433445666555553
No 268
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=46.67 E-value=69 Score=24.21 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=27.0
Q ss_pred hhHHHHHhcCCEEEe--ecCC---CCcchHHHHHHhcCCCEEee
Q 022615 151 EELSQAYASGDVFVM--PSES---ETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~--ps~~---e~~~~~~~Ea~a~G~pvI~~ 189 (294)
.++.++++.||++++ |... .-++-..++.|--|.-+|..
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 578899999999886 4333 23567788888877766654
No 269
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=46.51 E-value=17 Score=21.64 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.4
Q ss_pred chHHHHHHhcCCCEEee
Q 022615 173 GLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 173 ~~~~~Ea~a~G~pvI~~ 189 (294)
-.++.|++..|.||++-
T Consensus 14 K~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 14 KDKIAESAVMGTPVVAL 30 (58)
T ss_pred hhHHHHHHhcCceeEee
Confidence 35789999999999874
No 270
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=46.48 E-value=19 Score=24.83 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=25.3
Q ss_pred HHHhcCCEEEeecCC-CCcchHHHH---HHhcCCCEEeecCC
Q 022615 155 QAYASGDVFVMPSES-ETLGLVVLE---AMSSGIPVVGVRAG 192 (294)
Q Consensus 155 ~~~~~ad~~l~ps~~-e~~~~~~~E---a~a~G~pvI~~~~~ 192 (294)
+.+..||++|..... ..-+.+.+| |.+.|+||++-...
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 788999999876442 122344444 67889999886443
No 271
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=46.29 E-value=1.4e+02 Score=23.27 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=63.5
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchH-HHHHHhcCCCEEeecCCCccc
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV-VLEAMSSGIPVVGVRAGGIPD 196 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~-~~Ea~a~G~pvI~~~~~~~~e 196 (294)
+.++.++..... +.+.++....++.+...-.. ...+..+++++..+........ .-++-..|+||-+.+.+...+
T Consensus 32 ga~VtVvsp~~~-~~l~~l~~~~~i~~~~~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~ 107 (205)
T TIGR01470 32 GAQLRVIAEELE-SELTLLAEQGGITWLARCFD---ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS 107 (205)
T ss_pred CCEEEEEcCCCC-HHHHHHHHcCCEEEEeCCCC---HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe
Confidence 456677764332 55666666556665443211 3446788887765543323333 455668899997777766555
Q ss_pred ccccC--CCCcceeec-CCC-C---HHHHHHHHHHHhh-ChHHHHHHHHHHHHHHH
Q 022615 197 IIPED--QDGKIGYLF-NPG-D---LDDCLSKLEPLLY-NQELRETMGQAARQEME 244 (294)
Q Consensus 197 ~~~~~--~~~~~g~~~-~~~-d---~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~ 244 (294)
++-.. +.+..-+.+ +.+ + ...+.+.|..++. +-+.+.++....+..++
T Consensus 108 f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~~~~~~~~~~R~~~k 163 (205)
T TIGR01470 108 FIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLPPSLGDLATLAATWRDAVK 163 (205)
T ss_pred EEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 55211 222222222 112 2 3455555666653 23334444445555553
No 272
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=46.29 E-value=13 Score=21.96 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=15.3
Q ss_pred HHhcCCCEEeecCCCcccccccCCCCcceeecC--CCCHHHHHHHHH
Q 022615 179 AMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFN--PGDLDDCLSKLE 223 (294)
Q Consensus 179 a~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~--~~d~~~l~~~i~ 223 (294)
|-.+|+|+++....-..+.+ |.....++ ..+.+++.++|+
T Consensus 11 A~~~~lp~~~gSDAH~~~~v-----G~~~t~~~~~~~s~~~l~~alr 52 (56)
T PF13263_consen 11 AEKYGLPFTGGSDAHFLEEV-----GRGYTEFEGPIRSPEELLEALR 52 (56)
T ss_dssp HHHTT--EEEE--BSSGGGT-----TTTHHHH---------------
T ss_pred HHHcCCCeEeEEcccChhhc-----CCEeeecccccccccccccccc
Confidence 56789999998777666666 44444442 234566666654
No 273
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.28 E-value=1.4e+02 Score=23.38 Aligned_cols=161 Identities=12% Similarity=0.154 Sum_probs=78.2
Q ss_pred CCCCceEEEeecccccccHHHHHHHHHhCC-CcEEEEEcCCccH-HHHHhhhcCCC-eEEEecccc-hhHH---------
Q 022615 88 EPDKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIAFIGDGPYR-EELEKMFTGMP-AVFTGMLLG-EELS--------- 154 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~-~~~l~i~G~~~~~-~~~~~~~~~~~-v~~~g~~~~-~~~~--------- 154 (294)
..+.++|-.-|+..-- -.+.++++.+... .+.+.++-....+ +.+.+..+..+ ...+|.-+. ..++
T Consensus 68 LAk~PVISVNGN~AAL-~p~e~v~La~~~~aklEVNLF~RteeRv~~I~e~L~~~Ga~~vLg~~~~~~~ip~l~s~R~~v 146 (256)
T COG1701 68 LAKHPVISVNGNVAAL-VPEEVVELAEATGAKLEVNLFYRTEERVRKIAEVLKEHGAKEVLGTDPDAARIPGLESERGKV 146 (256)
T ss_pred hccCCeEEEcCceeee-CcHHHHHHHHHhCCceEEEeeccCHHHHHHHHHHHHhcCcceeecCCcccccCCCcccccccc
Confidence 4566777777765221 1334444444442 3445444433322 23333333332 333333221 1111
Q ss_pred --HHHhcCCEEEeecCCCCcchHHHHHH-hcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHH
Q 022615 155 --QAYASGDVFVMPSESETLGLVVLEAM-SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 231 (294)
Q Consensus 155 --~~~~~ad~~l~ps~~e~~~~~~~Ea~-a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~ 231 (294)
+=+-.||+++.|....-- .|++ -+|+-||+-|...+.... +....- =.+.+..++-.++.--.+
T Consensus 147 ~~~GIy~ADVVLvpLEDGDR----teaLv~mGK~ViaIDLNPLSRTa---r~AsIt------IVDnivRA~p~li~~~~e 213 (256)
T COG1701 147 SEEGIYSADVVLVPLEDGDR----TEALVRMGKTVIAIDLNPLSRTA---RKASIT------IVDNIVRAVPNLIEFVKE 213 (256)
T ss_pred CcccceeccEEEEecCCCcH----HHHHHHhCCeEEEEeCCcccccc---ccCcee------eeHHHHHHHHHHHHHHHH
Confidence 223467999999753222 2333 479999999987776655 222211 124555555555442211
Q ss_pred H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 022615 232 R-ETMGQAARQEMEKYDWRAATRTIRNEQYNA 262 (294)
Q Consensus 232 ~-~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~ 262 (294)
. ..-.+...+.+.+|+-..+..+.+..+-+.
T Consensus 214 m~~~~reel~~iv~~ydN~~~l~eal~~I~~r 245 (256)
T COG1701 214 MKNASREELEEIVENYDNKEVLAEALKHIAER 245 (256)
T ss_pred HhccCHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 1 111233344456787776666655455443
No 274
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=46.15 E-value=1.2e+02 Score=30.36 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=42.0
Q ss_pred EEEEcCCccHHHHHhhhcCC-Ce--EEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 121 IAFIGDGPYREELEKMFTGM-PA--VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 121 l~i~G~~~~~~~~~~~~~~~-~v--~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
++.+.+. ..+..+++.... ++ .-...-+.+++.++++.+|+++...-..--...+..++.+|+++++..
T Consensus 608 lV~VaD~-~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 608 HVIVASL-YLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred EEEEECC-CHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 3444432 234444444433 43 223334457888888999999985543333556778889999998764
No 275
>PRK06436 glycerate dehydrogenase; Provisional
Probab=45.70 E-value=99 Score=25.87 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=45.8
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEeccc----------chhHHHHHhcCCEEEe--ecCCC---CcchHHHHHHhc
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLL----------GEELSQAYASGDVFVM--PSESE---TLGLVVLEAMSS 182 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~----------~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea~a~ 182 (294)
+-++-|+|-|.-...+.+.++..+....++-+ ..++.++++.||++++ |...+ -++...++.|--
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ 201 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRK 201 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCC
Confidence 46788999887776666666554433322211 2468899999998886 33322 245667888877
Q ss_pred CCCEEee
Q 022615 183 GIPVVGV 189 (294)
Q Consensus 183 G~pvI~~ 189 (294)
|.-+|-.
T Consensus 202 ga~lIN~ 208 (303)
T PRK06436 202 GLAIINV 208 (303)
T ss_pred CeEEEEC
Confidence 7655544
No 276
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=45.20 E-value=1.4e+02 Score=24.49 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=46.2
Q ss_pred HHHHHHh-CCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEE
Q 022615 109 LKRVMDR-LPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 187 (294)
Q Consensus 109 l~~~~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI 187 (294)
+.+.+.. .+++++..+-+. ..+..++.....+. ....+++.+++..+|+++..+......-...+++..|++|+
T Consensus 21 ~a~~L~~~~~~~el~aV~dr-~~~~a~~~a~~~g~----~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi 95 (271)
T PRK13302 21 IAQALDRGLPGLTLSAVAVR-DPQRHADFIWGLRR----PPPVVPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAI 95 (271)
T ss_pred HHHHHHhcCCCeEEEEEECC-CHHHHHHHHHhcCC----CcccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEE
Confidence 4455554 467777644332 23334444443321 01124566667889999887655544555678889999999
Q ss_pred eecCC
Q 022615 188 GVRAG 192 (294)
Q Consensus 188 ~~~~~ 192 (294)
+...+
T Consensus 96 ~~s~g 100 (271)
T PRK13302 96 VLSVG 100 (271)
T ss_pred Eecch
Confidence 75443
No 277
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=45.04 E-value=2.1e+02 Score=24.99 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=61.1
Q ss_pred CCceEEEeecccccccHHHHHHHHHh-CCCcEEEEEcCCc-cHHHHHhhhc-CCCeEEEecccchhHHHHHhc--CCEEE
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDR-LPEARIAFIGDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYAS--GDVFV 164 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~-~~~~~l~i~G~~~-~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~--ad~~l 164 (294)
+..+.+++++.+...-...+++.+.+ .|+.++++.-..+ ..+...+... ...+.+.+.-....+..+++. -|+++
T Consensus 50 ~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~ 129 (425)
T PRK05749 50 GPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVI 129 (425)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEE
Confidence 45678899999988888888877754 5788776654322 2232322222 122344443333456666654 47776
Q ss_pred eecCCCCcchHHHHHHhcCCCEEeec
Q 022615 165 MPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
.- ..+-++..+..+-..|+|++..+
T Consensus 130 ~~-~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 130 IM-ETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred EE-ecchhHHHHHHHHHCCCCEEEEe
Confidence 53 23567777777788899998753
No 278
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=44.74 E-value=1.8e+02 Score=24.02 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=50.0
Q ss_pred cccHHHHHHHH-HhC-CCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC---CCCcch---
Q 022615 103 EKSLDFLKRVM-DRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE---SETLGL--- 174 (294)
Q Consensus 103 ~k~~~~l~~~~-~~~-~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~---~e~~~~--- 174 (294)
.-|=+.+++++ +.+ ++..+++....+... . +..+|.-..+.+..++...+..+|++|.... .+..+.
T Consensus 11 N~GDe~~l~~~l~~l~~~~~~~v~s~~p~~~--~---~~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~ 85 (298)
T TIGR03609 11 NLGDEALLAALLRELPPGVEPTVLSNDPAET--A---KLYGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSL 85 (298)
T ss_pred CcchHHHHHHHHHhcCCCCeEEEecCChHHH--H---hhcCceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccH
Confidence 34445555544 344 668888776554322 1 2236666666666788899999999997642 222211
Q ss_pred -----HHHHHHhcCCCEEeecC
Q 022615 175 -----VVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 175 -----~~~Ea~a~G~pvI~~~~ 191 (294)
...-|..+|+|++....
T Consensus 86 ~~~~~~~~~a~~~~k~~~~~g~ 107 (298)
T TIGR03609 86 LYYLGLMRLARLFGKPVILWGQ 107 (298)
T ss_pred HHHHHHHHHHHHcCCCEEEEec
Confidence 12345568999987544
No 279
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=44.41 E-value=91 Score=21.11 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=39.5
Q ss_pred EEEEcCCcc----HHHHHhhhcCCCeEE-EecccchhHHHHHhcCCEEEeecCCCCcchHHHH-HHhcCCCEEeecC
Q 022615 121 IAFIGDGPY----REELEKMFTGMPAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLE-AMSSGIPVVGVRA 191 (294)
Q Consensus 121 l~i~G~~~~----~~~~~~~~~~~~v~~-~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~E-a~a~G~pvI~~~~ 191 (294)
++++|.|.. .+.+++.+++.++.+ .-..+..++...+..+|+++......-.=..+-| +-..|+||.+.+.
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCH
Confidence 355566543 245555665554321 2344558888999999988765431111112222 3355889987653
No 280
>PRK07283 hypothetical protein; Provisional
Probab=43.73 E-value=99 Score=20.79 Aligned_cols=73 Identities=10% Similarity=0.110 Sum_probs=46.9
Q ss_pred cHHHHHHHHHhCCCcEEEEEcCC-c--cHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH
Q 022615 105 SLDFLKRVMDRLPEARIAFIGDG-P--YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 105 ~~~~l~~~~~~~~~~~l~i~G~~-~--~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea 179 (294)
|.+...++++.- ++.++|+... + ..+.+.+.+...+|.+....+.+++...+... ..++.-..+||...+++.
T Consensus 22 G~~~v~~aik~g-k~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~eLG~a~Gk~-~~vvai~d~g~a~~l~~~ 97 (98)
T PRK07283 22 GEELVVKAIQSG-QAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLELSAAVGKP-RKVLAVTDAGFSKKMRSL 97 (98)
T ss_pred cHHHHHHHHHcC-CccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCC-ceEEEEeChhHHHHHHHh
Confidence 566777777763 5677776543 2 34556666656566666666779999999984 444444566777776653
No 281
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=43.50 E-value=2.4e+02 Score=25.19 Aligned_cols=40 Identities=10% Similarity=-0.057 Sum_probs=26.0
Q ss_pred hhHHHHHhcC--CEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 151 EELSQAYASG--DVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 151 ~~~~~~~~~a--d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+.+.++.... |++|.....-..-...++|+.+|+.|...+
T Consensus 139 egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALAN 180 (454)
T PLN02696 139 EGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALAN 180 (454)
T ss_pred HHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEec
Confidence 5666776654 777766543222334589999999986654
No 282
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=43.10 E-value=1.3e+02 Score=21.91 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=39.7
Q ss_pred CeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEee-cCCCccccc
Q 022615 141 PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGGIPDII 198 (294)
Q Consensus 141 ~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~-~~~~~~e~~ 198 (294)
..++.|+...+++.++...|.+++.= ..-.+++.++..++|.|.- +..-+.|.+
T Consensus 47 gl~v~~F~~~~kiQsli~darIVISH----aG~GSIL~~~rl~kplIv~pr~s~y~elv 101 (161)
T COG5017 47 GLRVYGFDKEEKIQSLIHDARIVISH----AGEGSILLLLRLDKPLIVVPRSSQYQELV 101 (161)
T ss_pred ccEEEeechHHHHHHHhhcceEEEec----cCcchHHHHhhcCCcEEEEECchhHHHhh
Confidence 36788998889999999999977632 2234688999999998764 444445554
No 283
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=42.77 E-value=1.7e+02 Score=24.48 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=56.6
Q ss_pred hhHHHHHhcCCEEEeecC-CCCcchHHHHHHhcCC-CEEe-ecCCCccccccc--CCCCcceeecCCCCHHHHHHHHHHH
Q 022615 151 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGI-PVVG-VRAGGIPDIIPE--DQDGKIGYLFNPGDLDDCLSKLEPL 225 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~G~-pvI~-~~~~~~~e~~~~--~~~~~~g~~~~~~d~~~l~~~i~~l 225 (294)
..=..-++.||+++.-.. .|+|-.++++...... ++|. ++.-.....-.. ........+.++.+...+++.|.+-
T Consensus 73 p~di~~i~~ADliv~nG~~le~w~~k~~~~~~~~~~~~i~~s~~i~~~~~~~~~~~g~~dpH~Wldp~na~~~v~~I~~~ 152 (303)
T COG0803 73 PSDIAKLRKADLIVYNGLGLEPWLEKLLESADKKKVLVIEVSDGIELLPLPGEEEEGVNDPHVWLDPKNAKIYAENIADA 152 (303)
T ss_pred HHHHHHHHhCCEEEEcCCChHHHHHHHHHhcccCCceEEEccCCccccCCCCccccCCCCCCeecCHHHHHHHHHHHHHH
Confidence 334466788899887654 6777778887776654 3332 222111111100 0012455566677777777777776
Q ss_pred hh--ChHHHHHHHHHHHHHHHh
Q 022615 226 LY--NQELRETMGQAARQEMEK 245 (294)
Q Consensus 226 l~--~~~~~~~~~~~~~~~~~~ 245 (294)
+. +|+......+|+.++.++
T Consensus 153 L~~~dP~~~~~y~~N~~~y~~k 174 (303)
T COG0803 153 LVELDPENKETYEKNAEAYLKK 174 (303)
T ss_pred HHHhCcccHHHHHHHHHHHHHH
Confidence 64 788777778888776554
No 284
>smart00040 CSF2 Granulocyte-macrophage colony-simulating factor (GM-CSF). GM-CSF stimulates the development of and the cytotoxic activity of white blood cells.
Probab=42.43 E-value=89 Score=21.33 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHH--HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhcCC
Q 022615 215 LDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRA--ATRTIRNEQYNAAIWFWRKKRAQLLRPIQWLAKRIFPS 288 (294)
Q Consensus 215 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (294)
.+++.+++.-+-+.++....|.+. -+.+ +.|+.+. ..+.-+ .+|++-+...-.+=.-.+.-++.+++.-||-
T Consensus 16 VdAIkEAlsLLn~s~dt~a~mnEt-VeVVSe~Fd~qeptClQtRL-~LYkqGLrGslt~Lkg~LtmmA~hYkq~Cpp 90 (121)
T smart00040 16 VDAIKEALSLLNDSRDTAAVMNET-VEVVSEMFDLQEPTCLQTRL-KLYKQGLRGSLTKLKGPLTMMASHYKQHCPP 90 (121)
T ss_pred HHHHHHHHHHHhcCCchHhHhcch-HHHHHhccCCCCCcHHHHHH-HHHHhhccccHHHhhcHHHHHHHHHHhcCCC
Confidence 445555554443333333444442 2334 5688654 555555 6888876554444444455677888887774
No 285
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=42.03 E-value=51 Score=24.79 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=25.7
Q ss_pred HHHhcCCEEEee---cCCCCcchHHHH---HHhcCCCEEeecC
Q 022615 155 QAYASGDVFVMP---SESETLGLVVLE---AMSSGIPVVGVRA 191 (294)
Q Consensus 155 ~~~~~ad~~l~p---s~~e~~~~~~~E---a~a~G~pvI~~~~ 191 (294)
..+.+||++|.- .+.+.=+.+.+| +.|.|+||++...
T Consensus 64 ~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~AlgKPv~~~~~ 106 (172)
T COG3613 64 KLIDQADIVLANLDPFRPDPDSGTAFELGYAIALGKPVYAYRK 106 (172)
T ss_pred HHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcCCceEEEee
Confidence 678889998863 333344555555 5788999998753
No 286
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=41.89 E-value=92 Score=26.94 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=46.2
Q ss_pred HHHHHHHhCCCc-EEEEEcCCccHHHHHhhhc---CCCeE--EEecccchhHHHHHhcCCEEEeecCCCCcchH-HHHHH
Q 022615 108 FLKRVMDRLPEA-RIAFIGDGPYREELEKMFT---GMPAV--FTGMLLGEELSQAYASGDVFVMPSESETLGLV-VLEAM 180 (294)
Q Consensus 108 ~l~~~~~~~~~~-~l~i~G~~~~~~~~~~~~~---~~~v~--~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~-~~Ea~ 180 (294)
.+++.+.+..+. ++.+.|... +.+++... ..++. ....-+.+++.++++.+|++|.....- ++.. +--++
T Consensus 12 ~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i 88 (386)
T PF03435_consen 12 AIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACI 88 (386)
T ss_dssp HHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHH
Confidence 345555555555 888888654 33444432 23333 334444567999999999999865433 4444 44567
Q ss_pred hcCCCEEee
Q 022615 181 SSGIPVVGV 189 (294)
Q Consensus 181 a~G~pvI~~ 189 (294)
.+|++.|-+
T Consensus 89 ~~g~~yvD~ 97 (386)
T PF03435_consen 89 EAGVHYVDT 97 (386)
T ss_dssp HHT-EEEES
T ss_pred HhCCCeecc
Confidence 789998873
No 287
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=41.76 E-value=1.2e+02 Score=26.43 Aligned_cols=73 Identities=11% Similarity=0.152 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCCCeEEEecc----------cchhHHHHHhcCCEEE--eecCCC----C---cchHHH
Q 022615 117 PEARIAFIGDGPYREELEKMFTGMPAVFTGML----------LGEELSQAYASGDVFV--MPSESE----T---LGLVVL 177 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~----------~~~~~~~~~~~ad~~l--~ps~~e----~---~~~~~~ 177 (294)
.+.++-|+|-|.-...+.+.++..++...++= ...++.++++.||+++ .|...+ + ++...+
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l 194 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLI 194 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHH
Confidence 56789999998877777777766554333321 1246889999999988 454332 2 344566
Q ss_pred HHHhcCCCEEee
Q 022615 178 EAMSSGIPVVGV 189 (294)
Q Consensus 178 Ea~a~G~pvI~~ 189 (294)
+.|.-|.-+|.+
T Consensus 195 ~~mk~gailIN~ 206 (378)
T PRK15438 195 RSLKPGAILINA 206 (378)
T ss_pred hcCCCCcEEEEC
Confidence 666666555544
No 288
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=41.72 E-value=17 Score=28.90 Aligned_cols=104 Identities=19% Similarity=0.350 Sum_probs=49.8
Q ss_pred EEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccH--HHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCC
Q 022615 94 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR--EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESET 171 (294)
Q Consensus 94 i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~ 171 (294)
|+=.|+++...-++++++-...-.++.+.++|.|... +.++... .++.+- ...|++++.|-..+
T Consensus 6 iiKlGNig~s~~idl~LDErAdRedI~vrv~gsGaKm~pe~~e~~~-------------~~~~~~-~~pdf~I~isPN~~ 71 (276)
T PF01993_consen 6 IIKLGNIGTSVVIDLLLDERADREDIDVRVVGSGAKMGPEDVEEVV-------------TKMLKE-WDPDFVIVISPNAA 71 (276)
T ss_dssp EEEES--HHHHHTTGGGSTTS--SSEEEEEEEEET--SHHHHHHHH-------------HHHHHH-H--SEEEEE-S-TT
T ss_pred EEEecccchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHH-------------HHHHHh-hCCCEEEEECCCCC
Confidence 4455665544444444443333467888888876521 1111110 111111 25677777665433
Q ss_pred --cchHHHHHH-hcCCCEEe-ecCCCc--ccccccCCCCcceeecCCCC
Q 022615 172 --LGLVVLEAM-SSGIPVVG-VRAGGI--PDIIPEDQDGKIGYLFNPGD 214 (294)
Q Consensus 172 --~~~~~~Ea~-a~G~pvI~-~~~~~~--~e~~~~~~~~~~g~~~~~~d 214 (294)
.|.+.-|.+ +.|+|+|+ +|.++. .+.+ +..+-|+++-..|
T Consensus 72 ~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l---~~~g~GYIivk~D 117 (276)
T PF01993_consen 72 APGPTKAREMLSAKGIPCIVISDAPTKKAKDAL---EEEGFGYIIVKAD 117 (276)
T ss_dssp SHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHH---HHTT-EEEEETTS
T ss_pred CCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHH---HhcCCcEEEEecC
Confidence 456678887 58999754 565533 3444 5566777776544
No 289
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=41.16 E-value=63 Score=21.60 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=38.2
Q ss_pred EEEEcCCcc----HHHHHhhhcCCCeEE-EecccchhHHHHHhcCCEEEeecCCCCcchHHHHHH--hcCCCEEeecCCC
Q 022615 121 IAFIGDGPY----REELEKMFTGMPAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM--SSGIPVVGVRAGG 193 (294)
Q Consensus 121 l~i~G~~~~----~~~~~~~~~~~~v~~-~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~--a~G~pvI~~~~~~ 193 (294)
++++|.|-. ...+++.+++.++.+ ....+-.++.+....+|+++....... -..-++.. ..|+||.+-+...
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~-~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAY-MLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHH-HHHHHHHHhhhcCCCEEEeChhh
Confidence 345565532 234455555544422 233344677778888998887543211 12223333 4578998865443
No 290
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=41.03 E-value=1.7e+02 Score=22.74 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=30.9
Q ss_pred cchhHHHHHhcCCEEEeecC---------CCC-cchHHHHHHhcCCCEEeecCC
Q 022615 149 LGEELSQAYASGDVFVMPSE---------SET-LGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~ps~---------~e~-~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
+.+++.+.+..||+++++.- .+. .-..+.+.+..|+|++.+.-|
T Consensus 70 ~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAG 123 (210)
T cd03129 70 NDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAG 123 (210)
T ss_pred CCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHH
Confidence 44788899999999988642 112 233467888889998877554
No 291
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=40.99 E-value=2.6e+02 Score=24.81 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=27.7
Q ss_pred hhHHHHHhcCCEEEeecC---CCCcchH----HHHHHhcCCCEEeecC
Q 022615 151 EELSQAYASGDVFVMPSE---SETLGLV----VLEAMSSGIPVVGVRA 191 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~---~e~~~~~----~~Ea~a~G~pvI~~~~ 191 (294)
.++...++.||++|.... .+.+|.. ++-|..+|+|++....
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 466778999999998642 2333322 3456789999987643
No 292
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=40.87 E-value=2.2e+02 Score=23.90 Aligned_cols=46 Identities=26% Similarity=0.288 Sum_probs=26.3
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHh--cCCCEEeecCCCccc
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMS--SGIPVVGVRAGGIPD 196 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a--~G~pvI~~~~~~~~e 196 (294)
+++.+.+..+|+++..+........+-+++. .|.|.+.-|.+-.++
T Consensus 230 ~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrd 277 (311)
T cd05213 230 DELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred HHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCC
Confidence 5677888999999987654433111222222 245666666653333
No 293
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=40.54 E-value=43 Score=23.86 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=42.4
Q ss_pred eEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh
Q 022615 93 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA 158 (294)
Q Consensus 93 ~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 158 (294)
.-+|+|++...---+.+.+++.+.-+++-+|.|-.... ....+.-|..+.+.++-...++
T Consensus 37 ~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~k------ktpCGFCFVeyy~~~dA~~Alr 96 (153)
T KOG0121|consen 37 CTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFK------KTPCGFCFVEYYSRDDAEDALR 96 (153)
T ss_pred ceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCC------cCccceEEEEEecchhHHHHHH
Confidence 47899999999999999999999999999999943211 1122455566655555554444
No 294
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=40.27 E-value=1.5e+02 Score=24.31 Aligned_cols=95 Identities=19% Similarity=0.147 Sum_probs=51.0
Q ss_pred cchhHHHHHhcCCEEEeecC-CCCcchHHHHHHhc-CCCEEeecCCCccccc-c-c---------C--CCCcceeecCCC
Q 022615 149 LGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSS-GIPVVGVRAGGIPDII-P-E---------D--QDGKIGYLFNPG 213 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~-G~pvI~~~~~~~~e~~-~-~---------~--~~~~~g~~~~~~ 213 (294)
+...-..-++.||+++.-.. .|++-.++++.... +.++|.. ..+...+- . . . .....-++.++.
T Consensus 42 ~~p~d~~~l~~Adliv~~G~~~e~w~~k~~~~~~~~~~~~v~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~ 120 (282)
T cd01017 42 PSPKDIARIADADVFVYNGLGMETWAEKVLKSLQNKKLKVVEA-SKGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPV 120 (282)
T ss_pred CCHHHHHHHHhCCEEEEcCcchHHHHHHHHHhcccCCceEEEC-CCCccccccccccccccccccccCCCCCCccccCHH
Confidence 33445567888999887543 56776777776542 2344422 11111100 0 0 0 001233456666
Q ss_pred CHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Q 022615 214 DLDDCLSKLEPLLY--NQELRETMGQAARQEME 244 (294)
Q Consensus 214 d~~~l~~~i~~ll~--~~~~~~~~~~~~~~~~~ 244 (294)
+...+++.|.+.+. +|+......+++.++..
T Consensus 121 ~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~ 153 (282)
T cd01017 121 LAIQQVENIKDALIKLDPDNKEYYEKNAAAYAK 153 (282)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 66777777777664 66665666666666543
No 295
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=40.12 E-value=1.5e+02 Score=21.90 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=26.4
Q ss_pred HHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCccccc
Q 022615 156 AYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDII 198 (294)
Q Consensus 156 ~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~ 198 (294)
-+..+|+++..+..+.....+.+....+.+|-+.+.+...++.
T Consensus 67 dl~~a~lViaaT~d~e~N~~i~~~a~~~~~vn~~d~~~~~~f~ 109 (157)
T PRK06719 67 DIKDAHLIYAATNQHAVNMMVKQAAHDFQWVNVVSDGTESSFH 109 (157)
T ss_pred cCCCceEEEECCCCHHHHHHHHHHHHHCCcEEECCCCCcCcEE
Confidence 3577898888876666666666555556666555554444443
No 296
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=39.58 E-value=53 Score=24.45 Aligned_cols=39 Identities=31% Similarity=0.288 Sum_probs=26.5
Q ss_pred hHHHHHhcCCEEEeecCCCCcc--hHHHHHHhcCCCEEeecCC
Q 022615 152 ELSQAYASGDVFVMPSESETLG--LVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 152 ~~~~~~~~ad~~l~ps~~e~~~--~~~~Ea~a~G~pvI~~~~~ 192 (294)
--.-+...||++|...- ++| .-+.|++..++||+.-+..
T Consensus 84 Rk~~m~~~sda~IvlpG--G~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 84 RNFILVRSADVVVSVGG--GYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred HHHHHHHHCCEEEEcCC--chhHHHHHHHHHHcCCCEEEEECC
Confidence 44466777888776542 444 3478999999998765543
No 297
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=39.51 E-value=1.1e+02 Score=23.63 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=36.1
Q ss_pred EEEEcCCccHHHHHhhhcCCC--eEEEecccchhHHHHHhcCCEEEeecCCC-----------CcchHHHHHHhcCCCEE
Q 022615 121 IAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSESE-----------TLGLVVLEAMSSGIPVV 187 (294)
Q Consensus 121 l~i~G~~~~~~~~~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~l~ps~~e-----------~~~~~~~Ea~a~G~pvI 187 (294)
++..|+..+...+.......+ +.+.... ++ ...+|.+++|.-.. ++-..+.++...|+||+
T Consensus 3 ~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~--~~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvl 76 (194)
T cd01750 3 VIRYPDISNFTDLDPLAREPGVDVRYVEVP--EG----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVL 76 (194)
T ss_pred eecCCCccCHHHHHHHHhcCCceEEEEeCC--CC----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEE
Confidence 344454444555666555544 4444433 33 56778888875421 22234667777899998
Q ss_pred ee
Q 022615 188 GV 189 (294)
Q Consensus 188 ~~ 189 (294)
+.
T Consensus 77 gi 78 (194)
T cd01750 77 GI 78 (194)
T ss_pred EE
Confidence 74
No 298
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=39.42 E-value=2.5e+02 Score=24.47 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=50.8
Q ss_pred cccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhc--CCCeEEEecccchhHHHHHhc--CCEEEeecCCCCcchHHHH
Q 022615 103 EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT--GMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLE 178 (294)
Q Consensus 103 ~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~--~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~~~~~~~E 178 (294)
.++++.+.+.++.+. .+.+.+++......+..... ..++.++.- .+.+.++... +|+++.....-..=...++
T Consensus 36 ~~n~~~L~~q~~~f~-p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G--~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~ 112 (389)
T TIGR00243 36 GKNVALMVEQILEFR-PKFVAIDDEASLKDLKTMLQQQGSRTEVLVG--EEGICEMAALEDVDQVMNAIVGAAGLLPTLA 112 (389)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEcCHHHHHHHHHHhhcCCCCcEEEEC--HHHHHHHHcCCCCCEEEEhhhcHhhHHHHHH
Confidence 578888888888884 35555565544555555443 112333322 2667777774 4888876442222234689
Q ss_pred HHhcCCCEEee
Q 022615 179 AMSSGIPVVGV 189 (294)
Q Consensus 179 a~a~G~pvI~~ 189 (294)
|+.+|+.+...
T Consensus 113 Ai~~gk~iaLA 123 (389)
T TIGR00243 113 AIRAGKTIALA 123 (389)
T ss_pred HHHCCCcEEEe
Confidence 99999987544
No 299
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=39.37 E-value=2.4e+02 Score=24.58 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=51.6
Q ss_pred cccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCCcchHHHHHH
Q 022615 103 EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAM 180 (294)
Q Consensus 103 ~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~~~~~~~Ea~ 180 (294)
.++++.+.+.++++.. +.+++++......+++.....++.++. ..+.+.++... +|+++.....-..=...++|+
T Consensus 31 ~~n~~~L~~q~~~f~p-~~v~i~~~~~~~~l~~~l~~~~~~v~~--G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai 107 (383)
T PRK12464 31 NYNIELLEQQIKRFQP-RIVSVADKELADTLRTRLSANTSKITY--GTDGLIAVATHPGSDLVLSSVVGAAGLLPTIEAL 107 (383)
T ss_pred CCCHHHHHHHHHHhCC-CEEEEcCHHHHHHHHHhccCCCcEEEE--CHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHH
Confidence 5788999999888843 455556544445555544322333332 22677777775 488887654222223468999
Q ss_pred hcCCCEEee
Q 022615 181 SSGIPVVGV 189 (294)
Q Consensus 181 a~G~pvI~~ 189 (294)
..|+.+...
T Consensus 108 ~~gk~iaLA 116 (383)
T PRK12464 108 KAKKDIALA 116 (383)
T ss_pred HCCCcEEEe
Confidence 999987544
No 300
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=39.17 E-value=1.8e+02 Score=22.45 Aligned_cols=108 Identities=11% Similarity=0.162 Sum_probs=62.0
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCC-CeEEEecc-cchhHHHHHh--cCCEEEeecCCCC----cchHHHHHHh---cCCC
Q 022615 118 EARIAFIGDGPY-REELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSESET----LGLVVLEAMS---SGIP 185 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~-~v~~~g~~-~~~~~~~~~~--~ad~~l~ps~~e~----~~~~~~Ea~a---~G~p 185 (294)
+.+++++.+.+. ...+...+... .+...+.. +.++....+. ..|++++-....+ .|..+++.+. .++|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~ 82 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLS 82 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCc
Confidence 356677766543 33445554432 23333333 2245555554 3688887543322 4556666553 3467
Q ss_pred EEee-cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 186 VVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 186 vI~~-~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
||+- ..... ...+ +.|-.|++..+.+.+++.++|..+...
T Consensus 83 iIvls~~~~~~~~~~a~---~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 83 IIVLTMNNNPAILSAVL---DLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred EEEEEecCCHHHHHHHH---HCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 6653 33221 2334 668889999999999999999887653
No 301
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=38.68 E-value=1.5e+02 Score=24.13 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=43.6
Q ss_pred EEecchhhHHHHHHhccCCcCceEEee-ccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHHHHHHHHHh
Q 022615 37 TLVPSVAIGKDLEAARVTAANKIRIWK-KGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 115 (294)
Q Consensus 37 ii~~s~~~~~~~~~~~~~~~~~i~~i~-~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~ 115 (294)
|+++........++.+|-..+-..++| .|.|+..|.+....... ..+.-.+++.| .+.. ..+-++++.
T Consensus 5 Vvtt~~pl~~~v~~I~gd~v~V~~l~p~~g~dpH~y~~~p~d~~~-------l~~ADliv~~G-~~lE---~~~~k~~~~ 73 (264)
T cd01020 5 VVASTNFWGSVAEAVGGDHVEVTSIITNPDVDPHDFEPTPTDAAK-------VSTADIVVYNG-GGYD---PWMTKLLAD 73 (264)
T ss_pred EEEEccHHHHHHHHHcCCceEEEEecCCCCCCcccCCCCHHHHHH-------HhhCCEEEEeC-CCch---HHHHHHHHh
Confidence 566666666666776654333446789 89999999776443321 12444688888 2222 234444444
Q ss_pred CCCcEEEEE
Q 022615 116 LPEARIAFI 124 (294)
Q Consensus 116 ~~~~~l~i~ 124 (294)
.++..++..
T Consensus 74 ~~~~~v~~~ 82 (264)
T cd01020 74 TKDVIVIAA 82 (264)
T ss_pred cCCceEEee
Confidence 444444333
No 302
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=38.48 E-value=1e+02 Score=19.67 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=31.4
Q ss_pred eEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecC
Q 022615 142 AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 142 v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 191 (294)
|.+...+...++. +....-..+........+...+-|-++|+|.|+.-.
T Consensus 13 IlV~~~~~p~~~~-~~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 13 ILVAEELTPSDLA-LDLQRVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp EEEESS--TTCHH-SHHTTSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred EEEECCCCHHHHh-cchhheEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 6667777777777 333333444455555668888999999999998643
No 303
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=38.41 E-value=2.5e+02 Score=23.96 Aligned_cols=138 Identities=12% Similarity=0.172 Sum_probs=78.6
Q ss_pred cHHHHHHHHHHhCCeEEecc--hhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhh-----cCCCCCceE
Q 022615 22 PMWLVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLS-----NGEPDKPLI 94 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~s--~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~-----~~~~~~~~i 94 (294)
-.+-..+.+-+.+|.|++=. ......+.+.- .+-|| |+-+-+..+|.+.-.+...-.. ...-+...|
T Consensus 89 sl~Dtarvls~y~D~IviR~~~~~~~~~~a~~~-----~vPVI-Na~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~ki 162 (338)
T PRK08192 89 SLYDTARVLSTYSDVIAMRHPDAGSVKEFAEGS-----RVPVI-NGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHI 162 (338)
T ss_pred CHHHHHHHHHHcCCEEEEeCCchhHHHHHHHhC-----CCCEE-ECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEE
Confidence 35566778888899988844 33334444432 33344 5555334566433222211111 011245789
Q ss_pred EEeecccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 95 VHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 95 ~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
.|+|.....+-...++.++..+.++.+.+++...+ .+.+.+.++..+..+. . .+++.+.+..||++.....
T Consensus 163 a~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~-~--~~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 163 AMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKIT-I--TDQLEGNLDKADILYLTRI 235 (338)
T ss_pred EEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEE-E--EcCHHHHHccCCEEEEcCc
Confidence 99997755566777777777666889999985332 2233333332221111 1 2678899999999988643
No 304
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=38.27 E-value=1.5e+02 Score=25.79 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=43.7
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCCCeEEEec----------ccchhHHHHHhcCCEEEe--ecCCC-------CcchHHH
Q 022615 117 PEARIAFIGDGPYREELEKMFTGMPAVFTGM----------LLGEELSQAYASGDVFVM--PSESE-------TLGLVVL 177 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~----------~~~~~~~~~~~~ad~~l~--ps~~e-------~~~~~~~ 177 (294)
.+.++-|+|-|.-...+.+.+...++...++ ....++.++++.||++++ |...+ -++...+
T Consensus 115 ~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l 194 (381)
T PRK00257 115 AERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFL 194 (381)
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHH
Confidence 4678999999887777777766555433332 122468899999998775 43221 1234455
Q ss_pred HHHhcCCCEEe
Q 022615 178 EAMSSGIPVVG 188 (294)
Q Consensus 178 Ea~a~G~pvI~ 188 (294)
+.|.-|.-+|.
T Consensus 195 ~~mk~gailIN 205 (381)
T PRK00257 195 ASLRPGAWLIN 205 (381)
T ss_pred hcCCCCeEEEE
Confidence 55555544443
No 305
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=37.97 E-value=1.7e+02 Score=25.65 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=34.1
Q ss_pred CcEEEEEcCCccHHHHHhhhcCC----------CeEEEecccchhHHHHHhcCCEEEeecCC
Q 022615 118 EARIAFIGDGPYREELEKMFTGM----------PAVFTGMLLGEELSQAYASGDVFVMPSES 169 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~----------~v~~~g~~~~~~~~~~~~~ad~~l~ps~~ 169 (294)
+..++|++.|+....+++..+.. ++..+-++|.+++.++++.++.++..-..
T Consensus 259 dAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n 320 (390)
T PRK08366 259 DADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRN 320 (390)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCC
Confidence 45677777665544333332211 25566777889999999999988877554
No 306
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=37.92 E-value=33 Score=23.70 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=29.7
Q ss_pred hhHHHHHh--cCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCc
Q 022615 151 EELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 194 (294)
Q Consensus 151 ~~~~~~~~--~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~ 194 (294)
.++.+++. ..|++|=.+..+....-+.+++..|+.||+.+.+..
T Consensus 49 ~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~al 94 (117)
T PF03447_consen 49 TDLEELIDDPDIDVVVECTSSEAVAEYYEKALERGKHVVTANKGAL 94 (117)
T ss_dssp SSHHHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HHHH
T ss_pred CCHHHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHHHh
Confidence 45556666 789999775555555667889999999998766543
No 307
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.49 E-value=2.4e+02 Score=23.33 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=52.2
Q ss_pred cchhHHHHHhcCCEEEeecC-CCCcchHHHHHHhcCCCEEeecCC-Ccccccc-c------------------CCC--Cc
Q 022615 149 LGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAG-GIPDIIP-E------------------DQD--GK 205 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~G~pvI~~~~~-~~~e~~~-~------------------~~~--~~ 205 (294)
+...-...++.||++|.-.. .|++-.++++... +.++|....+ +...... . ..+ ..
T Consensus 42 ~~p~d~~~l~~Adliv~~G~~le~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d 120 (286)
T cd01019 42 LRPSDARKLQEADLVVWIGPDLEAFLDKVLQGRK-KGKVLTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGGLD 120 (286)
T ss_pred CCHHHHHHHHhCCEEEEeCCCchHHHHHHHHhcC-cCceEecccCCcccccccccccccccccccccccccCCCCCCCCC
Confidence 33445567788999887653 5677667776543 3455433211 1100000 0 000 12
Q ss_pred ceeecCCCCHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Q 022615 206 IGYLFNPGDLDDCLSKLEPLLY--NQELRETMGQAARQEMEK 245 (294)
Q Consensus 206 ~g~~~~~~d~~~l~~~i~~ll~--~~~~~~~~~~~~~~~~~~ 245 (294)
.-++.++.+...+++.|.+-|. +|+......+++.++.++
T Consensus 121 PHiWldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 162 (286)
T cd01019 121 PHLWLSPENAAEVAQAVAEKLSALDPDNAATYAANLEAFNAR 162 (286)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHH
Confidence 3345666667777777777664 777766677776665543
No 308
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=37.30 E-value=1.9e+02 Score=23.54 Aligned_cols=120 Identities=13% Similarity=0.042 Sum_probs=65.4
Q ss_pred CceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhh-cCCC-eEEEecccchhHHHHHhcCCEEEeecC
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMF-TGMP-AVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~-~~~~-v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
..+++..| .|.+..+...... ..+.+.+.-.....+.+.++. ...+ +-.-|..+.+.=..+++...+-++-+.
T Consensus 130 ~~i~lttG----~k~l~~f~~~~~~-~~~~~RvLP~~~~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK 204 (256)
T TIGR00715 130 KRVFLTAG----ASWLSHFSLSQDE-AVVFVRVLPYPQALAQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTK 204 (256)
T ss_pred CcEEEecC----cchHHHHhhccCC-ceEEEEECCCchhhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEc
Confidence 45677777 4555555432110 123333332221222333321 1223 556777776665678877655444333
Q ss_pred ----CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 169 ----SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 169 ----~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
..|+.-|+--|..+|+|||.-+-+....-. ..+ .+.+++.+.+.+++
T Consensus 205 ~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~~---------~~~--~~~~el~~~l~~~~ 255 (256)
T TIGR00715 205 ASGEQGGELEKVKAAEALGINVIRIARPQTIPGV---------AIF--DDISQLNQFVARLL 255 (256)
T ss_pred CCCCccchHHHHHHHHHcCCcEEEEeCCCCCCCC---------ccC--CCHHHHHHHHHHhc
Confidence 235678898899999999987776532111 123 37788877776653
No 309
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=36.35 E-value=1.8e+02 Score=23.70 Aligned_cols=92 Identities=10% Similarity=0.034 Sum_probs=49.2
Q ss_pred hhHHHHHhcCCEEEeecC-CCC-cchHHHHHHhcCCCEEeecCCCccccc-cc-------------CCCCcceeecCCCC
Q 022615 151 EELSQAYASGDVFVMPSE-SET-LGLVVLEAMSSGIPVVGVRAGGIPDII-PE-------------DQDGKIGYLFNPGD 214 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~-~e~-~~~~~~Ea~a~G~pvI~~~~~~~~e~~-~~-------------~~~~~~g~~~~~~d 214 (294)
..-..-++.||+++.-.. .|+ +-.++++.. -+.++|....+ ...+. .. .......++.++.+
T Consensus 43 p~d~~~l~~Adlvv~~G~~le~~w~~~~~~~~-~~~~~v~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~ 120 (266)
T cd01018 43 PQQMKKLSEADLYFRIGLGFEEVWLERFRSNN-PKMQVVNMSKG-ITLIPMADHHHHHHGEHEHHHHGNYDPHIWLSPAN 120 (266)
T ss_pred HHHHHHHHhCCEEEEcCCcchHHHHHHHHhhC-CCCeEEECCCC-ceeccccccccccccccccccCCCCCCccCcCHHH
Confidence 445577788898887643 454 544555533 23445543211 11000 00 00113445566667
Q ss_pred HHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Q 022615 215 LDDCLSKLEPLLY--NQELRETMGQAARQEME 244 (294)
Q Consensus 215 ~~~l~~~i~~ll~--~~~~~~~~~~~~~~~~~ 244 (294)
...+++.|...|. +|+......+++..+.+
T Consensus 121 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~ 152 (266)
T cd01018 121 AKIMAENIYEALAELDPQNATYYQANLDALLA 152 (266)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 7778888877764 67766666666666544
No 310
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=36.17 E-value=73 Score=21.18 Aligned_cols=34 Identities=24% Similarity=0.178 Sum_probs=22.5
Q ss_pred HHHHhcCCEEEeecCCCCcchHHH---HHHhcCCCEE
Q 022615 154 SQAYASGDVFVMPSESETLGLVVL---EAMSSGIPVV 187 (294)
Q Consensus 154 ~~~~~~ad~~l~ps~~e~~~~~~~---Ea~a~G~pvI 187 (294)
...+..||.+++...++.....-+ -|...|++|+
T Consensus 54 l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 54 LAMLSDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHHhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 366779998777555554444444 4667888887
No 311
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=36.11 E-value=86 Score=20.94 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=38.1
Q ss_pred EEEEcCCcc----HHHHHhhhcCCCeEE-EecccchhHHHHHhcCCEEEeecCCCCcchHHHH-HHhcCCCEEeecC
Q 022615 121 IAFIGDGPY----REELEKMFTGMPAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLE-AMSSGIPVVGVRA 191 (294)
Q Consensus 121 l~i~G~~~~----~~~~~~~~~~~~v~~-~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~E-a~a~G~pvI~~~~ 191 (294)
++++|.|-. .+.+++.+++.++.+ ....+-.++......+|+++........=-.+-| +.-.|+||..-+.
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcCh
Confidence 456666532 235555555544322 2233346777788899988875432211112222 3457899987654
No 312
>PRK08605 D-lactate dehydrogenase; Validated
Probab=35.97 E-value=1.9e+02 Score=24.59 Aligned_cols=76 Identities=17% Similarity=0.334 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCccHHHHHhhh-cCCCeEEEecc--c----------chhHHHHHhcCCEEEe--ecCCCC---cchHHHH
Q 022615 117 PEARIAFIGDGPYREELEKMF-TGMPAVFTGML--L----------GEELSQAYASGDVFVM--PSESET---LGLVVLE 178 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~-~~~~v~~~g~~--~----------~~~~~~~~~~ad~~l~--ps~~e~---~~~~~~E 178 (294)
.+-++-|+|-|.....+.+.+ ...+..+.++- . ..++.++++.||++++ |...+. ++...++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~ 224 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFK 224 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHh
Confidence 356788889887766666555 43333222221 1 1368889999998886 333222 2445677
Q ss_pred HHhcCCCEEeecCC
Q 022615 179 AMSSGIPVVGVRAG 192 (294)
Q Consensus 179 a~a~G~pvI~~~~~ 192 (294)
.|.-|..+|....|
T Consensus 225 ~mk~gailIN~sRG 238 (332)
T PRK08605 225 HFKKGAVFVNCARG 238 (332)
T ss_pred cCCCCcEEEECCCC
Confidence 78778766655443
No 313
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=35.89 E-value=1.3e+02 Score=26.44 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=44.8
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCCCeEEEeccc-----------chhHHHHHhcCCEEEe--ecCCC---CcchHHHHHH
Q 022615 117 PEARIAFIGDGPYREELEKMFTGMPAVFTGMLL-----------GEELSQAYASGDVFVM--PSESE---TLGLVVLEAM 180 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~-----------~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea~ 180 (294)
.+-++-|+|-|.-...+.+.+...+..+.++-+ ..++.++++.||++.+ |...+ -++-..+..|
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~m 229 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALM 229 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcC
Confidence 345788999888777777776655433332211 1378999999998876 43222 2344456666
Q ss_pred hcCCCEEee
Q 022615 181 SSGIPVVGV 189 (294)
Q Consensus 181 a~G~pvI~~ 189 (294)
--|.-+|.+
T Consensus 230 k~ga~lIN~ 238 (409)
T PRK11790 230 KPGAILINA 238 (409)
T ss_pred CCCeEEEEC
Confidence 555555544
No 314
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=35.81 E-value=1.8e+02 Score=21.59 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=45.4
Q ss_pred CceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCcc--HH--HHH----hhhcC--CCeEEEecccchhHHHHHhcC
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--RE--ELE----KMFTG--MPAVFTGMLLGEELSQAYASG 160 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~--~~~----~~~~~--~~v~~~g~~~~~~~~~~~~~a 160 (294)
...++++|. ....-...++.++..++ ..+.+++.... .. .+. +.... ..+.+. +++.+.++.|
T Consensus 2 gl~i~~vGD-~~~rv~~Sl~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-----~~~~e~l~~a 74 (158)
T PF00185_consen 2 GLKIAYVGD-GHNRVAHSLIELLAKFG-MEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT-----DDIEEALKGA 74 (158)
T ss_dssp TEEEEEESS-TTSHHHHHHHHHHHHTT-SEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE-----SSHHHHHTT-
T ss_pred CCEEEEECC-CCChHHHHHHHHHHHcC-CEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE-----eCHHHhcCCC
Confidence 357899996 44556778888888885 55888885431 11 222 22221 223333 7789999999
Q ss_pred CEEEeecCC
Q 022615 161 DVFVMPSES 169 (294)
Q Consensus 161 d~~l~ps~~ 169 (294)
|++....+.
T Consensus 75 Dvvy~~~~~ 83 (158)
T PF00185_consen 75 DVVYTDRWQ 83 (158)
T ss_dssp SEEEEESSS
T ss_pred CEEEEcCcc
Confidence 998877654
No 315
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=35.47 E-value=1.7e+02 Score=24.79 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=48.3
Q ss_pred CcEEEEEcCCccHHHHHhhhc-CCC--eEEEecc-----------cchhHHHHHhcCCEEEe--ecCCC---CcchHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFT-GMP--AVFTGML-----------LGEELSQAYASGDVFVM--PSESE---TLGLVVLE 178 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~-~~~--v~~~g~~-----------~~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~E 178 (294)
+-++-|+|-|.-...+.+.+. ..+ |.+.... ...++.++++.||++++ |...+ -++-..++
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~ 224 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFA 224 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHh
Confidence 457788998887777777665 444 4333222 11357899999998876 43322 35667888
Q ss_pred HHhcCCCEEeecCC
Q 022615 179 AMSSGIPVVGVRAG 192 (294)
Q Consensus 179 a~a~G~pvI~~~~~ 192 (294)
.|--|.-+|.+.-|
T Consensus 225 ~mk~ga~lIN~aRG 238 (323)
T PRK15409 225 KMKSSAIFINAGRG 238 (323)
T ss_pred cCCCCeEEEECCCc
Confidence 88777777765443
No 316
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=35.44 E-value=1.6e+02 Score=20.78 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=42.3
Q ss_pred CCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCccc
Q 022615 140 MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 196 (294)
Q Consensus 140 ~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e 196 (294)
..+.+....+.+++.+.+..+|+++..+.. .+.-.+++.+ -++-.|++...|...
T Consensus 19 ~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~ 73 (133)
T PF00389_consen 19 FEVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGVDN 73 (133)
T ss_dssp SEEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSCTT
T ss_pred ceEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEcccccCc
Confidence 468888888889999999999999875432 4777888888 788888887766654
No 317
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=35.40 E-value=1.5e+02 Score=25.44 Aligned_cols=42 Identities=7% Similarity=-0.025 Sum_probs=30.6
Q ss_pred eEEEecccchhHHHHHhcCCEEEeec---CCCCcchHHHHHHhcC
Q 022615 142 AVFTGMLLGEELSQAYASGDVFVMPS---ESETLGLVVLEAMSSG 183 (294)
Q Consensus 142 v~~~g~~~~~~~~~~~~~ad~~l~ps---~~e~~~~~~~Ea~a~G 183 (294)
+..+-.++.+.+.+.++.++.++... ...|+|..+.|.++-.
T Consensus 267 ~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~ 311 (355)
T PTZ00182 267 LRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMED 311 (355)
T ss_pred EeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 44566677788899999998776653 3567888888887654
No 318
>PRK13243 glyoxylate reductase; Reviewed
Probab=35.05 E-value=1.3e+02 Score=25.55 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCCC--eEEEecc-----------cchhHHHHHhcCCEEEe--ecCC---CCcchHHHH
Q 022615 117 PEARIAFIGDGPYREELEKMFTGMP--AVFTGML-----------LGEELSQAYASGDVFVM--PSES---ETLGLVVLE 178 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~-----------~~~~~~~~~~~ad~~l~--ps~~---e~~~~~~~E 178 (294)
.+-++-|+|-|.-...+.+.+...+ |.....- ...++.++++.||++++ |... .-++...++
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~ 228 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLK 228 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHh
Confidence 3457888888877666666655443 3332211 12357889999998886 3322 224556777
Q ss_pred HHhcCCCEEeecC
Q 022615 179 AMSSGIPVVGVRA 191 (294)
Q Consensus 179 a~a~G~pvI~~~~ 191 (294)
+|--|.-+|.+..
T Consensus 229 ~mk~ga~lIN~aR 241 (333)
T PRK13243 229 LMKPTAILVNTAR 241 (333)
T ss_pred cCCCCeEEEECcC
Confidence 8777766665433
No 319
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=34.76 E-value=2.5e+02 Score=22.78 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=47.4
Q ss_pred eEEEecccchhHHHHHhcCCEEEeecC---CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHH
Q 022615 142 AVFTGMLLGEELSQAYASGDVFVMPSE---SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 218 (294)
Q Consensus 142 v~~~g~~~~~~~~~~~~~ad~~l~ps~---~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l 218 (294)
+-..|..+.+.=..+++..++-++-+. ..|+.-|+--|..+|+|||.-+-+..... . ..+ .+.+++
T Consensus 171 iam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~--------~-~~~--~~~~e~ 239 (248)
T PRK08057 171 IALRGPFSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPALPYA--------D-REF--EDVAEL 239 (248)
T ss_pred EEeeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCC--------C-ccc--CCHHHH
Confidence 456677776665677877665444333 22577889889999999998776643211 0 122 377787
Q ss_pred HHHHHHHh
Q 022615 219 LSKLEPLL 226 (294)
Q Consensus 219 ~~~i~~ll 226 (294)
.+.+.+.+
T Consensus 240 ~~~l~~~~ 247 (248)
T PRK08057 240 VAWLRHLL 247 (248)
T ss_pred HHHHHHhh
Confidence 77776643
No 320
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.71 E-value=2.6e+02 Score=23.08 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=49.5
Q ss_pred hhHHHHHhcCCEEEeecC-CCCcchHHHHHHhcCCCEEeecCCCcccc-cc---cCCCCcceeecCCCCHHHHHHHHHHH
Q 022615 151 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDI-IP---EDQDGKIGYLFNPGDLDDCLSKLEPL 225 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~-~~---~~~~~~~g~~~~~~d~~~l~~~i~~l 225 (294)
..-..-++.||+++.-.. .|++-.+++....-+..+|....+ +..+ +. .......-++.++.+...+++.|.+.
T Consensus 58 p~d~~~l~~Adlvv~~G~~~E~wl~~~~~~~~~~~~~v~~~~~-i~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~Ia~~ 136 (287)
T cd01137 58 PSDIKKLSKADLILYNGLNLEPWLERLVKNAGKDVPVVAVSEG-IDPIPLEEGHYKGKPDPHAWMSPKNAIIYVKNIAKA 136 (287)
T ss_pred HHHHHHHHhCCEEEEcCCCcHHHHHHHHHhcCCCCcEEEecCC-ccccccCccccCCCCCCCcCcCHHHHHHHHHHHHHH
Confidence 344567778898886542 455545555544333445433211 1110 10 00011333456777777788887777
Q ss_pred hh--ChHHHHHHHHHHHHHHHh
Q 022615 226 LY--NQELRETMGQAARQEMEK 245 (294)
Q Consensus 226 l~--~~~~~~~~~~~~~~~~~~ 245 (294)
+. +|+......+++..+.++
T Consensus 137 L~~~dP~~~~~y~~N~~~~~~~ 158 (287)
T cd01137 137 LSEADPANAETYQKNAAAYKAK 158 (287)
T ss_pred HHHHCcccHHHHHHHHHHHHHH
Confidence 64 676666666666665443
No 321
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=33.92 E-value=3e+02 Score=23.40 Aligned_cols=75 Identities=21% Similarity=0.382 Sum_probs=50.9
Q ss_pred cEEEEEcCCccHHHHHhhhcCCC--eEEEecccc-----------hhHHHHHhcCCEEEe--ecCCCC---cchHHHHHH
Q 022615 119 ARIAFIGDGPYREELEKMFTGMP--AVFTGMLLG-----------EELSQAYASGDVFVM--PSESET---LGLVVLEAM 180 (294)
Q Consensus 119 ~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~~~-----------~~~~~~~~~ad~~l~--ps~~e~---~~~~~~Ea~ 180 (294)
-++=|+|.|.-.+.+.+.++..+ |.++...++ -++.++++.||++.+ |...++ ++...++.|
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~m 226 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKM 226 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhC
Confidence 46677888877777777776443 444443331 138899999998775 555443 577788888
Q ss_pred hcCCCEEeecCCC
Q 022615 181 SSGIPVVGVRAGG 193 (294)
Q Consensus 181 a~G~pvI~~~~~~ 193 (294)
--|.-+|-+.-|+
T Consensus 227 k~ga~lVNtaRG~ 239 (324)
T COG1052 227 KPGAILVNTARGG 239 (324)
T ss_pred CCCeEEEECCCcc
Confidence 8888888765554
No 322
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=33.66 E-value=1e+02 Score=26.30 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCcEEE-EEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCC
Q 022615 108 FLKRVMDRLPEARIA-FIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 185 (294)
Q Consensus 108 ~l~~~~~~~~~~~l~-i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~p 185 (294)
.+++.+...|.+++. ++.... ..+.+.+............+...+..++...+|++++..-.+.....+.++...|+.
T Consensus 15 ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~~~~G~~ 94 (346)
T TIGR01850 15 ELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGVSAELAPELLAAGVK 94 (346)
T ss_pred HHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchHHHHHHHHHHhCCCE
Confidence 566777788998888 445322 111122111110000000111123344556899988866444333334455678988
Q ss_pred EEe
Q 022615 186 VVG 188 (294)
Q Consensus 186 vI~ 188 (294)
||-
T Consensus 95 VID 97 (346)
T TIGR01850 95 VID 97 (346)
T ss_pred EEe
Confidence 884
No 323
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.64 E-value=2.4e+02 Score=23.45 Aligned_cols=61 Identities=10% Similarity=0.128 Sum_probs=39.9
Q ss_pred HHHHHHHHhC----CCcEEEEEcCCc-cHHHHHhhhcCC--CeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 107 DFLKRVMDRL----PEARIAFIGDGP-YREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 107 ~~l~~~~~~~----~~~~l~i~G~~~-~~~~~~~~~~~~--~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
.-++++++.+ .+-+.+++|.+. -..-+..++... .|+....- ..++.++++.||+++....
T Consensus 143 ~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~-t~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 143 LGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR-SKDMASYLKDADVIVSAVG 210 (286)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC-chhHHHHHhhCCEEEECCC
Confidence 3445555544 568999999876 444444444433 35555543 2679999999999998654
No 324
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=33.46 E-value=75 Score=20.65 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHhCC---CcEEEEEcCCccHHHHHhhhcCC
Q 022615 103 EKSLDFLKRVMDRLP---EARIAFIGDGPYREELEKMFTGM 140 (294)
Q Consensus 103 ~k~~~~l~~~~~~~~---~~~l~i~G~~~~~~~~~~~~~~~ 140 (294)
.+.+..+.++.++++ ++.++.+......+..++..+..
T Consensus 17 ~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 17 KKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp HHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 344566666667666 68888888777777777777766
No 325
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=33.40 E-value=2.5e+02 Score=22.37 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=58.3
Q ss_pred HHHHhhhcCCCeEEEecccchhHHHHHhc-CCEEEeecC-CCCcchHHHHHHh----cCCCEEe-ecCCCcccccccCCC
Q 022615 131 EELEKMFTGMPAVFTGMLLGEELSQAYAS-GDVFVMPSE-SETLGLVVLEAMS----SGIPVVG-VRAGGIPDIIPEDQD 203 (294)
Q Consensus 131 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~~-ad~~l~ps~-~e~~~~~~~Ea~a----~G~pvI~-~~~~~~~e~~~~~~~ 203 (294)
+.+.......+......-+.++..+.+.. .|++++--. .+.-|..++.-+- ...|||. |..+...+.+.--+.
T Consensus 14 ~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~ 93 (229)
T COG0745 14 ELLKEYLEEEGYEVDVAADGEEALEAAREQPDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEA 93 (229)
T ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhC
Confidence 34444445555444443333555555554 788887433 2333444444444 5677754 444444444422255
Q ss_pred CcceeecCCCCHHHHHHHHHHHhhC
Q 022615 204 GKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 204 ~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
|...++..|.++.++...|..++..
T Consensus 94 GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 94 GADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred cCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 7778899999999999999998763
No 326
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=33.28 E-value=1.2e+02 Score=25.52 Aligned_cols=63 Identities=6% Similarity=0.015 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHH-HHHhcCCC
Q 022615 107 DFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIP 185 (294)
Q Consensus 107 ~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~-Ea~a~G~p 185 (294)
..+++.+...|++.+..+..... ....+..++.+.+|++++..-.+ ....+. ++...|+.
T Consensus 15 ~el~rlL~~HP~~el~~l~s~~~------------------~~~~~~~~~~~~~D~vFlalp~~-~s~~~~~~~~~~g~~ 75 (310)
T TIGR01851 15 LQIRERLSGRDDIELLSIAPDRR------------------KDAAERAKLLNAADVAILCLPDD-AAREAVSLVDNPNTC 75 (310)
T ss_pred HHHHHHHhCCCCeEEEEEecccc------------------cCcCCHhHhhcCCCEEEECCCHH-HHHHHHHHHHhCCCE
Confidence 45777777788888877654321 11123446667889877654322 222333 34456887
Q ss_pred EEe
Q 022615 186 VVG 188 (294)
Q Consensus 186 vI~ 188 (294)
||-
T Consensus 76 VID 78 (310)
T TIGR01851 76 IID 78 (310)
T ss_pred EEE
Confidence 773
No 327
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=33.28 E-value=2.9e+02 Score=23.14 Aligned_cols=138 Identities=15% Similarity=0.154 Sum_probs=80.5
Q ss_pred ccHHHHHHHHHHhCCeEEecc--hhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHH-hhcCCCCCceEEEe
Q 022615 21 KPMWLVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR-LSNGEPDKPLIVHV 97 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~s--~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 97 (294)
-..+-..+.+-+.+|.|++=. ......+.+.- .+-|| |+-+-...+|..--.+...- ...+.-+...|.|+
T Consensus 83 Esi~Dta~vls~y~D~iviR~~~~~~~~~~a~~s-----~vPVI-Na~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~v 156 (301)
T TIGR00670 83 ETLADTIKTLSGYSDAIVIRHPLEGAARLAAEVS-----EVPVI-NAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALV 156 (301)
T ss_pred cCHHHHHHHHHHhCCEEEEECCchhHHHHHHhhC-----CCCEE-eCCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 345566777888899999843 33334444432 33344 55443445554322221111 11122355789999
Q ss_pred ecccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 98 GRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 98 G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
|...+.+-..-++.++..+ ++.+.+++...+ .+.+.+.+.+.+..+. -.+++.+.++.||++...+.
T Consensus 157 GD~~~~~v~~Sl~~~~a~~-g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~---~~~d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 157 GDLKYGRTVHSLAEALTRF-GVEVYLISPEELRMPKEILEELKAKGIKVR---ETESLEEVIDEADVLYVTRI 225 (301)
T ss_pred ccCCCCcHHHHHHHHHHHc-CCEEEEECCccccCCHHHHHHHHHcCCEEE---EECCHHHHhCCCCEEEECCc
Confidence 9776666678888888888 589999985432 2333333333232221 12788999999999887654
No 328
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=33.10 E-value=2.2e+02 Score=21.64 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc
Q 022615 106 LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 106 ~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 159 (294)
+..+.+.+++. ++++.++|-|...+.+++..+.-+=.+....+.+++.++|..
T Consensus 125 ~~~~~~~l~~~-~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~~~~~~l~~~~~~ 177 (183)
T cd01453 125 IYETIDKLKKE-NIRVSVIGLSAEMHICKEICKATNGTYKVILDETHLKELLLE 177 (183)
T ss_pred HHHHHHHHHHc-CcEEEEEEechHHHHHHHHHHHhCCeeEeeCCHHHHHHHHHh
Confidence 43445555543 688888887766667777777666555555666788888776
No 329
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=33.08 E-value=2.2e+02 Score=22.05 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=30.0
Q ss_pred ecccchhHHHHHhcCCEEEeecCCCCcchHHHH-HHhcCCCEEeecCCC
Q 022615 146 GMLLGEELSQAYASGDVFVMPSESETLGLVVLE-AMSSGIPVVGVRAGG 193 (294)
Q Consensus 146 g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~E-a~a~G~pvI~~~~~~ 193 (294)
..++.+++.++++.+|+++.....-..-..+.+ +...|+|.|.....+
T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 98 ERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred hcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 345556788899999999876532111122333 366799998865433
No 330
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=32.73 E-value=3.1e+02 Score=23.23 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=11.5
Q ss_pred eEEecchhhHHHHHHh
Q 022615 36 LTLVPSVAIGKDLEAA 51 (294)
Q Consensus 36 ~ii~~s~~~~~~~~~~ 51 (294)
.||++|+...+.+...
T Consensus 30 ~VIlvsDn~aD~~lA~ 45 (337)
T COG2247 30 VVILVSDNEADLLLAL 45 (337)
T ss_pred EEEEecchHHHHHHhh
Confidence 6778888887777543
No 331
>PRK11579 putative oxidoreductase; Provisional
Probab=32.50 E-value=2.7e+02 Score=23.69 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=49.9
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES 169 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~ 169 (294)
..++.+|.-.-. -.....++...++++++-+-+.. .+...+. ...+. ..+++.+++.. .|+++..+..
T Consensus 5 irvgiiG~G~i~--~~~~~~~~~~~~~~~l~av~d~~-~~~~~~~--~~~~~-----~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYAS--KTFHAPLIAGTPGLELAAVSSSD-ATKVKAD--WPTVT-----VVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHHH--HHHHHHHHhhCCCCEEEEEECCC-HHHHHhh--CCCCc-----eeCCHHHHhcCCCCCEEEEcCCc
Confidence 456666642211 12345667777888877554432 2222211 11111 12667778864 6888776544
Q ss_pred CCcchHHHHHHhcCCCEEee
Q 022615 170 ETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~ 189 (294)
..-.-.+.+|+..|++|++-
T Consensus 75 ~~H~~~~~~al~aGkhVl~E 94 (346)
T PRK11579 75 DTHFPLAKAALEAGKHVVVD 94 (346)
T ss_pred HHHHHHHHHHHHCCCeEEEe
Confidence 33344567899999999985
No 332
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=32.04 E-value=1.8e+02 Score=23.71 Aligned_cols=78 Identities=12% Similarity=0.187 Sum_probs=42.9
Q ss_pred HHHHHHhCCCcEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEE
Q 022615 109 LKRVMDRLPEARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 187 (294)
Q Consensus 109 l~~~~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI 187 (294)
+++.+...+++.+..+.... ..+...+.... .+.... ++.++-...|+++-.+......--..+++.+|++|+
T Consensus 16 ~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-~~~~~~-----d~~~l~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vv 89 (265)
T PRK13303 16 VLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-AVRVVS-----SVDALPQRPDLVVECAGHAALKEHVVPILKAGIDCA 89 (265)
T ss_pred HHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-CCeeeC-----CHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEE
Confidence 55666666776665544221 11222222211 233222 333333558998876654444455778899999999
Q ss_pred eecCC
Q 022615 188 GVRAG 192 (294)
Q Consensus 188 ~~~~~ 192 (294)
+...+
T Consensus 90 i~s~~ 94 (265)
T PRK13303 90 VISVG 94 (265)
T ss_pred EeChH
Confidence 86554
No 333
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=32.02 E-value=32 Score=24.68 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=40.4
Q ss_pred CCceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcC---CCeEEEecccchhHHHHHhcCCEEEee
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTG---MPAVFTGMLLGEELSQAYASGDVFVMP 166 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~---~~v~~~g~~~~~~~~~~~~~ad~~l~p 166 (294)
+...++.+|.-+- -..++..+....--++.+++... +..+++.+. .++....+ +++.+.+..+|+++..
T Consensus 11 ~~~~vlviGaGg~---ar~v~~~L~~~g~~~i~i~nRt~--~ra~~l~~~~~~~~~~~~~~---~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 11 KGKRVLVIGAGGA---ARAVAAALAALGAKEITIVNRTP--ERAEALAEEFGGVNIEAIPL---EDLEEALQEADIVINA 82 (135)
T ss_dssp TTSEEEEESSSHH---HHHHHHHHHHTTSSEEEEEESSH--HHHHHHHHHHTGCSEEEEEG---GGHCHHHHTESEEEE-
T ss_pred CCCEEEEECCHHH---HHHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHcCccccceeeH---HHHHHHHhhCCeEEEe
Confidence 3445666665332 23445555555333588888643 333333332 24444433 7888999999999987
Q ss_pred cC
Q 022615 167 SE 168 (294)
Q Consensus 167 s~ 168 (294)
+.
T Consensus 83 T~ 84 (135)
T PF01488_consen 83 TP 84 (135)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 334
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=31.38 E-value=79 Score=21.14 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=29.9
Q ss_pred EEEEcCCc-----cHHHHHhhhcCCCeEE-EecccchhHHHHHhcCCEEEeecC
Q 022615 121 IAFIGDGP-----YREELEKMFTGMPAVF-TGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 121 l~i~G~~~-----~~~~~~~~~~~~~v~~-~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
+..+|.|- -...+++.+++.++.. .....-+++......+|+++....
T Consensus 5 L~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~~ 58 (93)
T COG3414 5 LAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTSTK 58 (93)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEehH
Confidence 45567653 3456677777766532 222333778888899999986543
No 335
>TIGR00035 asp_race aspartate racemase.
Probab=31.36 E-value=1.7e+02 Score=23.13 Aligned_cols=94 Identities=12% Similarity=0.245 Sum_probs=48.1
Q ss_pred eEEEeecccccccHHHHHHHHHhCC------CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEE
Q 022615 93 LIVHVGRLGVEKSLDFLKRVMDRLP------EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFV 164 (294)
Q Consensus 93 ~i~~~G~~~~~k~~~~l~~~~~~~~------~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l 164 (294)
.|+.+|.+++.-..+.+-+..+..+ ....++.......+....+.....-.....+ .+..+.+. .+|+++
T Consensus 3 ~iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l--~~~~~~L~~~g~d~iv 80 (229)
T TIGR00035 3 MIGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPIL--IDIAVKLENAGADFII 80 (229)
T ss_pred eEEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHH--HHHHHHHHHcCCCEEE
Confidence 4889999998877776665554331 2455666554333333333322211122222 23333333 378999
Q ss_pred eecCCCCcchHHHHHHhcCCCEEee
Q 022615 165 MPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
+|......-..-+.. ..++|+|.-
T Consensus 81 iaCNTah~~~~~l~~-~~~iPii~i 104 (229)
T TIGR00035 81 MPCNTAHKFAEDIQK-AIGIPLISM 104 (229)
T ss_pred ECCccHHHHHHHHHH-hCCCCEech
Confidence 987643221222222 246888863
No 336
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=31.30 E-value=1.8e+02 Score=27.62 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=29.1
Q ss_pred CeEEEecc---cchhHHHHHhcCCEEEeecC---------CCCcchHHHHHHhcCCCEEee
Q 022615 141 PAVFTGML---LGEELSQAYASGDVFVMPSE---------SETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 141 ~v~~~g~~---~~~~~~~~~~~ad~~l~ps~---------~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
.+.++|.+ +++++.+++.....-+..|. .+..|.|+--|...|+|||.-
T Consensus 598 tfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e 658 (669)
T PRK14350 598 KFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSL 658 (669)
T ss_pred EEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecH
Confidence 35555544 23555555555443333221 244578999999999999853
No 337
>PRK13761 hypothetical protein; Provisional
Probab=31.25 E-value=2.7e+02 Score=22.19 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=81.8
Q ss_pred CCCCceEEEeecccccccHHHHHHHHHhCC-CcEEEEEcCCccH-HHHHhhhcCCCe-EEEecccchhHH----------
Q 022615 88 EPDKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIAFIGDGPYR-EELEKMFTGMPA-VFTGMLLGEELS---------- 154 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~-~~~l~i~G~~~~~-~~~~~~~~~~~v-~~~g~~~~~~~~---------- 154 (294)
..+.++|-.-|+..- =-.+.++++.+.+. ++.+-++-...++ +.+.+..++.+. .++|.-+...++
T Consensus 66 lA~~PVISVNGN~AA-L~p~eiveLa~~~~A~iEVNLF~RT~eR~~~I~~~l~~~Ga~~vlG~~~~~~ip~L~~~R~~v~ 144 (248)
T PRK13761 66 LAKHPVISVNGNTAA-LVPEEIVELAEALNAKLEVNLFYRTEERVEKIAEVLREHGAKEVLGTDEDARIPGLDHERAKVS 144 (248)
T ss_pred hcCCCeEEEcchHHh-hChHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHcCCceeeCCCCcCcCCCCCCccceEC
Confidence 456677777776522 12344555555542 4556555543332 334444444332 233432111111
Q ss_pred -HHHhcCCEEEeecCCCCcchHHHHHH-hcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHH
Q 022615 155 -QAYASGDVFVMPSESETLGLVVLEAM-SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELR 232 (294)
Q Consensus 155 -~~~~~ad~~l~ps~~e~~~~~~~Ea~-a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~ 232 (294)
+=+-.||+++.|....-- .||+ .+|+-||+-|...+.... +.... -+ .+.+..++-.+..--..+
T Consensus 145 ~~GIy~ADVVLVPLEDGDR----~EaL~~mGK~VI~IDLNPLSRTa---r~A~i-tI-----VDni~RA~p~m~~~~~el 211 (248)
T PRK13761 145 EDGIYSADVVLVPLEDGDR----TEALVKMGKTVIAIDLNPLSRTA---RTATI-TI-----VDNITRAVPNMTEYAREL 211 (248)
T ss_pred cccceeccEEEecCCCCcH----HHHHHHcCCeEEEEeCCCccccc---ccCce-ee-----ehhHHHHHHHHHHHHHHH
Confidence 224567999999753222 2443 689999999887766555 22221 12 234445554444322222
Q ss_pred HHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 022615 233 ETMG-QAARQEMEKYDWRAATRTIRNEQYNAA 263 (294)
Q Consensus 233 ~~~~-~~~~~~~~~~s~~~~~~~~~~~l~~~~ 263 (294)
+... ......+++|+-......-+..+-+.+
T Consensus 212 k~~~~~el~~iv~~~dN~~~L~~al~~I~~rl 243 (248)
T PRK13761 212 KKKDREELEEIVENYDNKKNLSEALKEIRERL 243 (248)
T ss_pred hcCCHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 2222 333445578888877766665554443
No 338
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=31.24 E-value=1.7e+02 Score=22.24 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=26.8
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchH--HHHHHh------cCCCEEeecCC
Q 022615 151 EELSQAYASGDVFVMPSESETLGLV--VLEAMS------SGIPVVGVRAG 192 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~--~~Ea~a------~G~pvI~~~~~ 192 (294)
+-...++..||++|.-. .|+|+- ++|++. .++||+..+..
T Consensus 88 ~Rk~~m~~~sda~I~lP--GG~GTL~El~e~~~~~qlg~~~kPiil~n~~ 135 (178)
T TIGR00730 88 ERKAMMAELADAFIAMP--GGFGTLEELFEVLTWAQLGIHQKPIILFNVN 135 (178)
T ss_pred HHHHHHHHhCCEEEEcC--CCcchHHHHHHHHHHHHcCCCCCCEEEECCc
Confidence 34457778899887644 344433 677775 58999988753
No 339
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=31.19 E-value=3.2e+02 Score=22.96 Aligned_cols=95 Identities=7% Similarity=0.032 Sum_probs=49.5
Q ss_pred chhHHHHHhcCCEEEeecC-CCCcchHHHHHHhcCCCEE-eecCCCcccccc-----c-----------------CC--C
Q 022615 150 GEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVV-GVRAGGIPDIIP-----E-----------------DQ--D 203 (294)
Q Consensus 150 ~~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~G~pvI-~~~~~~~~e~~~-----~-----------------~~--~ 203 (294)
...-..-++.||++|.-.. .|++=-++++... +..++ +....+...+.. . .. .
T Consensus 64 ~p~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 142 (311)
T PRK09545 64 RPSDVKRLQSADLVVWVGPEMEAFLEKPVSKLP-ENKQVTIAQLPDVKPLLMKGAHDDHHDDDHDHAGHEKSDEDHHHGE 142 (311)
T ss_pred CHHHHHHHhcCCEEEEeCCChHhHHHHHHHhcC-CCCeEEEecCCCcccccccccccccccccccccccccCCccCcCCC
Confidence 3445577788898887543 5665555665543 22322 222222211110 0 00 0
Q ss_pred CcceeecCCCCHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Q 022615 204 GKIGYLFNPGDLDDCLSKLEPLLY--NQELRETMGQAARQEMEK 245 (294)
Q Consensus 204 ~~~g~~~~~~d~~~l~~~i~~ll~--~~~~~~~~~~~~~~~~~~ 245 (294)
...-++.++.+...+++.|.+.+. +|+......+++..+.++
T Consensus 143 ~dPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 186 (311)
T PRK09545 143 YNMHIWLSPEIARATAVAIHDKLVELMPQSKAKLDANLKDFEAQ 186 (311)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHH
Confidence 123345555666677777776664 777766677776665443
No 340
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=31.03 E-value=2.8e+02 Score=22.29 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=27.2
Q ss_pred EecccchhHHHHHh-----cCCEEEeec-CCCCcc-hHHHHHHhcCCCEEeecCCC
Q 022615 145 TGMLLGEELSQAYA-----SGDVFVMPS-ESETLG-LVVLEAMSSGIPVVGVRAGG 193 (294)
Q Consensus 145 ~g~~~~~~~~~~~~-----~ad~~l~ps-~~e~~~-~~~~Ea~a~G~pvI~~~~~~ 193 (294)
.+.++.+.+.+... .+|+++.+- ..-+.. ..-+|.. .|+|||+++..-
T Consensus 162 ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~-lGkPVlsSNqat 216 (239)
T TIGR02990 162 MARISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQA-IGKPVVTSNQAT 216 (239)
T ss_pred eeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHH-HCCCEEEHHHHH
Confidence 44567777777776 356655542 222222 1123443 799999997643
No 341
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=30.99 E-value=88 Score=21.13 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=6.6
Q ss_pred cchhHHHHHhcCCEEEee
Q 022615 149 LGEELSQAYASGDVFVMP 166 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~p 166 (294)
+.+++.++....++-++.
T Consensus 73 ~~~~v~~la~~~~i~vi~ 90 (105)
T PF07085_consen 73 PSEEVLELAKELGIPVIS 90 (105)
T ss_dssp --HHHHHHHHHHT-EEEE
T ss_pred CCHHHHHHHHHCCCEEEE
Confidence 334444444444444433
No 342
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.92 E-value=2.9e+02 Score=22.44 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=33.5
Q ss_pred EEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEee
Q 022615 37 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG 98 (294)
Q Consensus 37 ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 98 (294)
|+++........++.+|-..+-..++|.|.|+-.|.+........ .+.-.|++.|
T Consensus 5 Vv~s~~pl~~~v~~I~gd~v~V~~lip~g~dpH~ye~~p~d~~~l-------~~Adlvv~~G 59 (266)
T cd01018 5 VAVSIEPQKYFVEKIAGDTVDVVVLVPPGSNPHTYEPKPQQMKKL-------SEADLYFRIG 59 (266)
T ss_pred EEEEehhHHHHHHHHcCCceeEEEeeCCCCCcCCCCCCHHHHHHH-------HhCCEEEEcC
Confidence 555555666666666654333446788999999887764433221 2334677777
No 343
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=30.82 E-value=41 Score=13.61 Aligned_cols=10 Identities=40% Similarity=0.670 Sum_probs=7.1
Q ss_pred HHHHHHhcCC
Q 022615 175 VVLEAMSSGI 184 (294)
Q Consensus 175 ~~~Ea~a~G~ 184 (294)
+++||+..|.
T Consensus 5 sllealqtg~ 14 (15)
T PF06345_consen 5 SLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHccC
Confidence 5778877764
No 344
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=30.72 E-value=2.5e+02 Score=21.51 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=50.8
Q ss_pred CceEEEeecccccccHHHHHHHHHh-CCCcEEEEEcCCccH-HHHHhhhcC-CCeEEEecccchhHHHHHhcC--CEEEe
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDR-LPEARIAFIGDGPYR-EELEKMFTG-MPAVFTGMLLGEELSQAYASG--DVFVM 165 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~-~~~~~l~i~G~~~~~-~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~a--d~~l~ 165 (294)
..+.+++...+.......+++.+.. .|+..+++....+.. +...+.... ..+.+.+.=...-+..+++.- |+++.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~ 101 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIW 101 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEE
Confidence 6678888888888888888888765 489999888754433 334444322 234443321113355555554 66654
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeecC
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~~ 191 (294)
. ..|-+|+-+.++-..|+|++.-+.
T Consensus 102 ~-EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 102 V-ETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp E-S----HHHHHH-----S-EEEEEE
T ss_pred E-ccccCHHHHHHHhhcCCCEEEEee
Confidence 3 457889999999999999986543
No 345
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=30.66 E-value=79 Score=23.01 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeec
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKK 64 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~ 64 (294)
+.+....+..+|.|++.+...+..+.+.++....++..+..
T Consensus 66 ~~lt~~~~~~~DlIl~M~~~~~~~l~~~~p~~~~k~~~l~~ 106 (144)
T PRK11391 66 RKLTAEMARNYDLILAMESEHIAQVTAIAPEVRGKTMLFGQ 106 (144)
T ss_pred CcCCHHHHhhCCEEEECCHHHHHHHHHHCCCCcCeEEehhH
Confidence 34566678899999999998888888776544456665543
No 346
>PRK07574 formate dehydrogenase; Provisional
Probab=30.65 E-value=1.3e+02 Score=26.31 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=47.1
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCC--eEEEecc-------------cchhHHHHHhcCCEEEe--ecCCC---CcchHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMP--AVFTGML-------------LGEELSQAYASGDVFVM--PSESE---TLGLVVL 177 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~-------------~~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~ 177 (294)
+-++-|+|-|.--..+.+.++..+ |...... ...++.++++.||++++ |...+ -++-..+
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l 271 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVL 271 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHH
Confidence 356788898877766666665544 3322221 12467889999998876 33222 2456678
Q ss_pred HHHhcCCCEEeecCC
Q 022615 178 EAMSSGIPVVGVRAG 192 (294)
Q Consensus 178 Ea~a~G~pvI~~~~~ 192 (294)
..|.-|.-+|.+..+
T Consensus 272 ~~mk~ga~lIN~aRG 286 (385)
T PRK07574 272 SRMKRGSYLVNTARG 286 (385)
T ss_pred hcCCCCcEEEECCCC
Confidence 888888777755433
No 347
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=30.61 E-value=2.9e+02 Score=22.27 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=36.2
Q ss_pred CCCeEEEec--ccchhHHHHHhcCCEEEeecC-C--CCcchHHHHHHhcCCCEEeecCCC
Q 022615 139 GMPAVFTGM--LLGEELSQAYASGDVFVMPSE-S--ETLGLVVLEAMSSGIPVVGVRAGG 193 (294)
Q Consensus 139 ~~~v~~~g~--~~~~~~~~~~~~ad~~l~ps~-~--e~~~~~~~Ea~a~G~pvI~~~~~~ 193 (294)
+.+|.+.|. ++.+++.+.+..||++|.-.. . .....-+.+|-..|.++|.-+...
T Consensus 150 rP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 150 RPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred CCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 446888777 345678888999999877432 2 222233456888999987665543
No 348
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=30.10 E-value=2.4e+02 Score=23.93 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=49.1
Q ss_pred CCCeEEEecccchhHH--HHHhcCCEEEeecCCCC-cchHHHHH-----HhcCCCEEeec--CCCcccccccCCCCccee
Q 022615 139 GMPAVFTGMLLGEELS--QAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGVR--AGGIPDIIPEDQDGKIGY 208 (294)
Q Consensus 139 ~~~v~~~g~~~~~~~~--~~~~~ad~~l~ps~~e~-~~~~~~Ea-----~a~G~pvI~~~--~~~~~e~~~~~~~~~~g~ 208 (294)
..++...|.+|-|.+- ......|++|.-+..-| .|.|++.. +..|+|+|-|. .|-.-++. |. |.
T Consensus 236 ~~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIA-----Gk-G~ 309 (326)
T PRK03371 236 AKGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFDIA-----WT-GK 309 (326)
T ss_pred HCCCcccCCCCchhhcccccccCCCEEEEccccccchhheecccccceEEecCCCeeEecCCCCchhhhh-----cC-Cc
Confidence 3467778999887654 44467899987766433 35555433 46699998764 34444554 22 22
Q ss_pred ecCCCCHHHHHHHHHHH
Q 022615 209 LFNPGDLDDCLSKLEPL 225 (294)
Q Consensus 209 ~~~~~d~~~l~~~i~~l 225 (294)
.|+.++.++|...
T Consensus 310 ----A~~~S~~~Ai~lA 322 (326)
T PRK03371 310 ----AKSESMAVSIKLA 322 (326)
T ss_pred ----CCHHHHHHHHHHH
Confidence 2788888888765
No 349
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=30.00 E-value=1.2e+02 Score=25.67 Aligned_cols=75 Identities=17% Similarity=0.365 Sum_probs=45.7
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCC--eEEEeccc---------chhHHHHHhcCCEEEe--ecCCC---CcchHHHHHHh
Q 022615 118 EARIAFIGDGPYREELEKMFTGMP--AVFTGMLL---------GEELSQAYASGDVFVM--PSESE---TLGLVVLEAMS 181 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~~---------~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea~a 181 (294)
+-++-|+|-|.....+...+...+ |.....-+ ..++.++++.||++++ |...+ -++...+..|.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk 225 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVK 225 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCC
Confidence 457888898876666666555443 33332211 1367889999998776 33322 24455677777
Q ss_pred cCCCEEeecCC
Q 022615 182 SGIPVVGVRAG 192 (294)
Q Consensus 182 ~G~pvI~~~~~ 192 (294)
-|..+|.+.-|
T Consensus 226 ~gavlIN~aRG 236 (330)
T PRK12480 226 KGAILVNAARG 236 (330)
T ss_pred CCcEEEEcCCc
Confidence 77777765444
No 350
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=29.32 E-value=2.6e+02 Score=21.41 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=44.1
Q ss_pred hhHHHHHh--cCCEEEeecCCCC---cchHHHHHHh---cCCCEEeec-CCCc---ccccccCCCCcceeecCCCCHHHH
Q 022615 151 EELSQAYA--SGDVFVMPSESET---LGLVVLEAMS---SGIPVVGVR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDC 218 (294)
Q Consensus 151 ~~~~~~~~--~ad~~l~ps~~e~---~~~~~~Ea~a---~G~pvI~~~-~~~~---~e~~~~~~~~~~g~~~~~~d~~~l 218 (294)
++....+. ..|++++-....+ .|..+++.+. ...|+|.-. .... ...+ ..|..+++..+.+.+++
T Consensus 34 ~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls~~~~~~~~~~~~---~~Ga~~~l~kp~~~~~l 110 (227)
T TIGR03787 34 PSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLTARDSDFDTVSGL---RLGADDYLTKDISLPHL 110 (227)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHH---hcCCCEEEECCCCHHHH
Confidence 44444443 3577777544332 3455555553 357776532 2221 1223 45777888999999999
Q ss_pred HHHHHHHhh
Q 022615 219 LSKLEPLLY 227 (294)
Q Consensus 219 ~~~i~~ll~ 227 (294)
.+.+..++.
T Consensus 111 ~~~i~~~~~ 119 (227)
T TIGR03787 111 LARITALFR 119 (227)
T ss_pred HHHHHHHHH
Confidence 999988765
No 351
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=29.21 E-value=1.8e+02 Score=24.76 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=50.5
Q ss_pred CCCeEEEecccchhHH--HHHhcCCEEEeecCCCC-cchHHHHH-----HhcCCCEEeec--CCCcccccccCCCCccee
Q 022615 139 GMPAVFTGMLLGEELS--QAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGVR--AGGIPDIIPEDQDGKIGY 208 (294)
Q Consensus 139 ~~~v~~~g~~~~~~~~--~~~~~ad~~l~ps~~e~-~~~~~~Ea-----~a~G~pvI~~~--~~~~~e~~~~~~~~~~g~ 208 (294)
..++...|.+|-|.+- ......|++|.-+..-| .|.|++.. +..|+|+|-|. .|..-++. |. |.
T Consensus 237 ~~g~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIA-----Gk-g~ 310 (332)
T PRK03743 237 EMGINVEGPVPADSVFHLALQGRYDAVLSLYHDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAFDIA-----GT-GK 310 (332)
T ss_pred HCCCcccCCCCchhhcccccccCCCEEEEcccccCChhheecccCCceEEecCCCeeEeCCCCcchhhhh-----cC-CC
Confidence 4467778999887654 44567899998766433 35555543 45699998763 44444554 22 22
Q ss_pred ecCCCCHHHHHHHHHHHh
Q 022615 209 LFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 209 ~~~~~d~~~l~~~i~~ll 226 (294)
.|+.++.++|....
T Consensus 311 ----A~~~S~~~Ai~lA~ 324 (332)
T PRK03743 311 ----ASSVSMEEAILLAA 324 (332)
T ss_pred ----CCHHHHHHHHHHHH
Confidence 27889999887653
No 352
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=28.98 E-value=3.1e+02 Score=22.19 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=71.2
Q ss_pred ccHHHHHHHHHHhCCeEEecchhhHHHHHHh---ccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEe
Q 022615 21 KPMWLVIKFLHRAADLTLVPSVAIGKDLEAA---RVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHV 97 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~---~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 97 (294)
.-...+.+.+....=-+++.|....+.+... .+....+++++.|-.+.+ ++....+|-
T Consensus 93 dg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd-------------------~~g~l~gF~ 153 (246)
T PF05822_consen 93 DGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFD-------------------EDGVLVGFK 153 (246)
T ss_dssp BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE--------------------TTSBEEEE-
T ss_pred cCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEEC-------------------CcceEeecC
Confidence 3344566666665555666666655444322 244457899998866532 234567777
Q ss_pred ecc--cccccHHHH--HHHHHhCC-CcEEEEEcCCccHHHHHhhh-cCCCeEEEecccc---hhHHHHHhcCCEEEeecC
Q 022615 98 GRL--GVEKSLDFL--KRVMDRLP-EARIAFIGDGPYREELEKMF-TGMPAVFTGMLLG---EELSQAYASGDVFVMPSE 168 (294)
Q Consensus 98 G~~--~~~k~~~~l--~~~~~~~~-~~~l~i~G~~~~~~~~~~~~-~~~~v~~~g~~~~---~~~~~~~~~ad~~l~ps~ 168 (294)
|.+ ...|+-..+ ..-++.+. .-.+++.|+..-.-...+-. ...++.-.|++.+ +.+..++...|+++.--.
T Consensus 154 ~~lIH~~NKn~~~l~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv~D~ 233 (246)
T PF05822_consen 154 GPLIHTFNKNESALEDSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLVDDQ 233 (246)
T ss_dssp SS---TT-HHHHHHTTHHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEET--
T ss_pred CCceEEeeCCcccccCchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEECCC
Confidence 765 334444333 23344553 46788999743222222222 2335667888855 358899999999997543
Q ss_pred CCCcchHHHHH
Q 022615 169 SETLGLVVLEA 179 (294)
Q Consensus 169 ~e~~~~~~~Ea 179 (294)
.-..+..+++.
T Consensus 234 tm~v~~~il~~ 244 (246)
T PF05822_consen 234 TMDVPNAILQS 244 (246)
T ss_dssp B-HHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 33345555544
No 353
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=28.85 E-value=2.5e+02 Score=20.90 Aligned_cols=105 Identities=14% Similarity=0.233 Sum_probs=60.2
Q ss_pred EEEEEcCCcc-HHHHHhhhcCC-CeEEEecc-cchhHHHHHh--cCCEEEeecC-CCCcchHHHHHHhcCCCEEeecCCC
Q 022615 120 RIAFIGDGPY-REELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGG 193 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~-~v~~~g~~-~~~~~~~~~~--~ad~~l~ps~-~e~~~~~~~Ea~a~G~pvI~~~~~~ 193 (294)
++.++.+.+. ...+.+..... +....... +..+....+. ..|++++-.. .+.-|..+++.+..+.|+|+.....
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~ 82 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHD 82 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCC
Confidence 4556665432 33444444322 33333322 2244444443 3577777543 2344566777777778876643222
Q ss_pred c-c---cccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 194 I-P---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 194 ~-~---e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
. . ..+ ..|..+++..+.+.+++.++|..++.
T Consensus 83 ~~~~~~~~~---~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 83 SPALVEQAL---NAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 2 2 223 45778899999999999999998775
No 354
>PRK14142 heat shock protein GrpE; Provisional
Probab=28.74 E-value=1.8e+02 Score=23.16 Aligned_cols=48 Identities=4% Similarity=-0.031 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 022615 215 LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 263 (294)
Q Consensus 215 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~ 263 (294)
.+++.+.+.++..+-+.+++..++-++.+.+|..+.+++.|+ .+++.+
T Consensus 49 ~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLL-pVlDnL 96 (223)
T PRK14142 49 VAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLL-GVLDDL 96 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHhHH
Confidence 455666666666666666666666667677899999999999 676665
No 355
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=28.71 E-value=1.4e+02 Score=25.12 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=44.2
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCe--EEEec-----------ccchhHHHHHhcCCEEEe--ecCCC---CcchHHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPA--VFTGM-----------LLGEELSQAYASGDVFVM--PSESE---TLGLVVLEA 179 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v--~~~g~-----------~~~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea 179 (294)
+.++-|+|-|.-...+.+.+...+. ..... .+.+++.++++.||++++ |...+ -++...++.
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~ 215 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQ 215 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhc
Confidence 4688899988877777666665443 22221 123568899999999886 33222 234456666
Q ss_pred HhcCCCEEee
Q 022615 180 MSSGIPVVGV 189 (294)
Q Consensus 180 ~a~G~pvI~~ 189 (294)
|--|.-+|..
T Consensus 216 mk~ga~lIN~ 225 (312)
T PRK15469 216 LPDGAYLLNL 225 (312)
T ss_pred CCCCcEEEEC
Confidence 6666655543
No 356
>PRK10126 tyrosine phosphatase; Provisional
Probab=28.54 E-value=76 Score=23.12 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeecc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 65 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g 65 (294)
+.+....+..+|.|++......+.+...++....++..+..+
T Consensus 66 r~lt~~~~~~~DlIl~Md~~~~~~l~~~~p~~~~k~~~l~~~ 107 (147)
T PRK10126 66 RQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVMLFGHW 107 (147)
T ss_pred ccCCHHHhccCCEEEECCHHHHHHHHHhcCcccCcEEehhhh
Confidence 356667788999999999998888888765434566655443
No 357
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=28.47 E-value=1.7e+02 Score=21.50 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=22.2
Q ss_pred hcCC-EEEeecCCCCcchHHHHHHh-cCCCEEe
Q 022615 158 ASGD-VFVMPSESETLGLVVLEAMS-SGIPVVG 188 (294)
Q Consensus 158 ~~ad-~~l~ps~~e~~~~~~~Ea~a-~G~pvI~ 188 (294)
..+| +++.|.-+...+..+.+|++ .++|+|=
T Consensus 66 ~~~dgiIINpga~THtSiAl~DAl~~~~~P~VE 98 (146)
T PRK13015 66 GDVAGIVINPGAYTHTSVAIRDALAALELPVIE 98 (146)
T ss_pred hcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEE
Confidence 3345 56668767777888999874 5899873
No 358
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=28.32 E-value=4.4e+02 Score=23.64 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=57.7
Q ss_pred CeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHH--HHhhcCCCCCceEEEeecccccccHHHHHHH
Q 022615 35 DLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMR--WRLSNGEPDKPLIVHVGRLGVEKSLDFLKRV 112 (294)
Q Consensus 35 d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~ 112 (294)
..+=+..+.+.+.+...-++ +.++..+...=....++..+...... .... ..+ ..+++.+|..+..-++..|.+.
T Consensus 289 ~~~gv~~e~i~~~L~~F~gl-~HR~e~v~~~~gv~f~NDSKATN~~At~~AL~-~~~-~~v~lI~GG~~Kg~df~~L~~~ 365 (448)
T COG0771 289 RALGVPPEAILEALSSFTGL-PHRLEFVGEKDGVLFINDSKATNVDATLAALS-GFD-GPVILIAGGDDKGADFSPLAEI 365 (448)
T ss_pred HHcCCCHHHHHHHHHhCCCC-CcceEEEEecCCEEEecCCCCCCHHHHHHHHH-cCC-CCEEEEECCCCCCCChhHHHHH
Confidence 33445667777777775554 57887776533333333332222111 1121 122 5788888888777778888888
Q ss_pred HHhCCCcEEEEEcCCccHHHHHhhhcCCC
Q 022615 113 MDRLPEARIAFIGDGPYREELEKMFTGMP 141 (294)
Q Consensus 113 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~ 141 (294)
+++. ...++++|.. .+.+...+.+..
T Consensus 366 ~~~~-~~~~~~~G~~--~~~i~~~l~~~~ 391 (448)
T COG0771 366 LAKV-IKKLVLIGED--AEKIAAALKEAG 391 (448)
T ss_pred hhhc-ceEEEEeCCC--HHHHHHHHHhcC
Confidence 7765 4557777853 345555555443
No 359
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.22 E-value=1.4e+02 Score=26.21 Aligned_cols=70 Identities=17% Similarity=0.319 Sum_probs=46.6
Q ss_pred HhcCCEEEeecCCC------CcchHHHHHHhcCCCEEeecCCCccc--cc-ccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 157 YASGDVFVMPSESE------TLGLVVLEAMSSGIPVVGVRAGGIPD--II-PEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 157 ~~~ad~~l~ps~~e------~~~~~~~Ea~a~G~pvI~~~~~~~~e--~~-~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
|.--|+++.|.+.+ .....+.+.+....|+|.++.+...+ +. .-.+.|.-|++....+++++.+.+.++-
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l~~eI~~vk 88 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVK 88 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHHHH
Confidence 44558889987644 24566789999999999876543221 11 0014577777766667888888887664
No 360
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=27.85 E-value=3.8e+02 Score=22.83 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHhCCeEEecc--hhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhh-cC-CCCCceEEEe
Q 022615 22 PMWLVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLS-NG-EPDKPLIVHV 97 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~s--~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~-~~-~~~~~~i~~~ 97 (294)
-++-..+.+-+.+|.|++=. ....+.+.+.- .+-|| |+-+ +..+|...-.+...-.. .+ .-+...|.|+
T Consensus 90 sl~DTarvls~y~D~iv~R~~~~~~~~~~a~~~-----~vPVI-Na~~-~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~v 162 (334)
T PRK01713 90 SMKDTARVLGRMYDAIEYRGFKQSIVNELAEYA-----GVPVF-NGLT-DEFHPTQMLADVLTMIENCDKPLSEISYVYI 162 (334)
T ss_pred CHHHHHHHHHHhCCEEEEEcCchHHHHHHHHhC-----CCCEE-ECCC-CCCChHHHHHHHHHHHHHcCCCcCCcEEEEE
Confidence 34556777788899998843 34444444432 33344 4433 44566433222111111 11 1245689999
Q ss_pred ecccccccHHHHHHHHHhCCCcEEEEEcCCccH------HHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeec
Q 022615 98 GRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR------EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 98 G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~------~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
|..... -..-++.++..+ ++.+.+++...+. +..++..+..+..+. -.+++.+.++.||++....
T Consensus 163 GD~~~~-v~~Sl~~~~~~~-g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~---~~~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 163 GDARNN-MGNSLLLIGAKL-GMDVRICAPKALLPEASLVEMCEKFAKESGARIT---VTDDIDKAVKGVDFVHTDV 233 (334)
T ss_pred CCCccC-HHHHHHHHHHHc-CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE---EEcCHHHHhCCCCEEEEcc
Confidence 976432 455677888887 7899999854221 112233332232211 1278899999999998754
No 361
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=27.85 E-value=73 Score=21.61 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHhCCCcEEEEEcCCc--cHHHHHhhhc
Q 022615 104 KSLDFLKRVMDRLPEARIAFIGDGP--YREELEKMFT 138 (294)
Q Consensus 104 k~~~~l~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~ 138 (294)
.....+.++++.+|+.+++++|+.. +.+...+.++
T Consensus 50 ~K~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~ 86 (100)
T PF09949_consen 50 HKRDNIERILRDFPERKFILIGDSGQHDPEIYAEIAR 86 (100)
T ss_pred HHHHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHH
Confidence 4457788888999999999999743 3334444443
No 362
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=27.74 E-value=1.5e+02 Score=30.92 Aligned_cols=76 Identities=18% Similarity=0.358 Sum_probs=39.3
Q ss_pred cHHHHHHHHHhCCCcEEEEEcCC--ccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhc
Q 022615 105 SLDFLKRVMDRLPEARIAFIGDG--PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 182 (294)
Q Consensus 105 ~~~~l~~~~~~~~~~~l~i~G~~--~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~ 182 (294)
+++++++.+++. ++.-+.+|.| ++...+-+++...+|.|+|+- ..-| .+ ..+-.+.+ +=|.++
T Consensus 125 NVdlIvdiAe~~-~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP-~~aM---~s---------LGDKI~ST-IvAQsa 189 (2196)
T KOG0368|consen 125 NVDLIVDIAERT-DVDAVWAGWGHASENPELPERLSANGIIFIGPP-ASAM---RA---------LGDKIAST-IIAQSA 189 (2196)
T ss_pred cHHHHHHHHHhc-ccceEeecccccccCcchHHHHHhcCcEEECCc-hHHH---HH---------hcchHHHH-HHHHhc
Confidence 456666665554 4555566654 333344444444445555543 1111 11 11222333 348999
Q ss_pred CCCEEeecCCCcc
Q 022615 183 GIPVVGVRAGGIP 195 (294)
Q Consensus 183 G~pvI~~~~~~~~ 195 (294)
|+|.+.....+..
T Consensus 190 ~vPtlpWSGS~v~ 202 (2196)
T KOG0368|consen 190 GVPTLPWSGSGVK 202 (2196)
T ss_pred CCCcccccCCcce
Confidence 9999988766554
No 363
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=27.67 E-value=2.6e+02 Score=22.69 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=37.5
Q ss_pred eEEEecccchhHHHHHhcCC--EEEee-cCCCCcchHHHHHHhcCCCEEeecCCCcc
Q 022615 142 AVFTGMLLGEELSQAYASGD--VFVMP-SESETLGLVVLEAMSSGIPVVGVRAGGIP 195 (294)
Q Consensus 142 v~~~g~~~~~~~~~~~~~ad--~~l~p-s~~e~~~~~~~Ea~a~G~pvI~~~~~~~~ 195 (294)
+-..|..+.+.=..+++... ++|.- |...|+..|+--|..+|+|||.-.-+...
T Consensus 175 ia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 175 IAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEP 231 (249)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC
Confidence 45667776666567777655 44442 22337788999999999999987766544
No 364
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=27.61 E-value=2.3e+02 Score=22.29 Aligned_cols=78 Identities=10% Similarity=0.159 Sum_probs=44.8
Q ss_pred hhHHHHHhcCCEEEeecCC-CCcchHHH-HHH---hcCCCEEeecC-CCc-ccccccCCCCcceeecCCCCHHHHHHHHH
Q 022615 151 EELSQAYASGDVFVMPSES-ETLGLVVL-EAM---SSGIPVVGVRA-GGI-PDIIPEDQDGKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~-e~~~~~~~-Ea~---a~G~pvI~~~~-~~~-~e~~~~~~~~~~g~~~~~~d~~~l~~~i~ 223 (294)
.+........|++++-... +.-|..++ +.+ .-+.+||.-.. ... ...+.. ..|-.|++....+.+++.++|.
T Consensus 44 ~~~~~~~~~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vvvlt~~~~~~~~~~~~-~~Ga~G~l~K~~~~~~L~~aI~ 122 (216)
T PRK10100 44 QRSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYREIEN-WPHINGVFYAMEDQERVVNGLQ 122 (216)
T ss_pred HHhhccCCCCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEEEEECCchhHHHHHHH-hcCCeEEEECCCCHHHHHHHHH
Confidence 3343334457888875543 23344342 333 34666665432 211 111200 1377899999999999999999
Q ss_pred HHhhCh
Q 022615 224 PLLYNQ 229 (294)
Q Consensus 224 ~ll~~~ 229 (294)
.++...
T Consensus 123 ~v~~G~ 128 (216)
T PRK10100 123 GVLRGE 128 (216)
T ss_pred HHHcCC
Confidence 887643
No 365
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.43 E-value=3.5e+02 Score=22.20 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=51.7
Q ss_pred EEeecccccccHHHHHHHHHhCC--CcEEEEEc-----------CCc---cHHHHHhhhcCCCeEEEecc-cchhHHHHH
Q 022615 95 VHVGRLGVEKSLDFLKRVMDRLP--EARIAFIG-----------DGP---YREELEKMFTGMPAVFTGML-LGEELSQAY 157 (294)
Q Consensus 95 ~~~G~~~~~k~~~~l~~~~~~~~--~~~l~i~G-----------~~~---~~~~~~~~~~~~~v~~~g~~-~~~~~~~~~ 157 (294)
+.++....-...+.+++.++.++ .++++..| .|. ..+.+.+..++.++.+.-.+ +..++..+.
T Consensus 29 ~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 29 IIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred EEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 33333444455666666666553 34555555 111 12345555556665544433 334444444
Q ss_pred hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecC
Q 022615 158 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 158 ~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 191 (294)
..+|++-.++..-..-.-+-++...|+||+.++.
T Consensus 109 ~~vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 109 DYADMLQIGSRNMQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred HhCCEEEECcccccCHHHHHHHhcCCCcEEEeCC
Confidence 5588888887632221234455567999998765
No 366
>PLN02306 hydroxypyruvate reductase
Probab=27.37 E-value=2.9e+02 Score=24.17 Aligned_cols=75 Identities=16% Similarity=0.314 Sum_probs=46.8
Q ss_pred CcEEEEEcCCccHHHHHhhhc-CCC--eEEEeccc---------------------------chhHHHHHhcCCEEEe--
Q 022615 118 EARIAFIGDGPYREELEKMFT-GMP--AVFTGMLL---------------------------GEELSQAYASGDVFVM-- 165 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~-~~~--v~~~g~~~---------------------------~~~~~~~~~~ad~~l~-- 165 (294)
+-++-|+|-|.-...+.+.+. ..+ |....... ..++.++++.||++++
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~ 244 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHP 244 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeC
Confidence 456778888877666666543 333 33322110 1478999999998776
Q ss_pred ecCCCC---cchHHHHHHhcCCCEEeecCC
Q 022615 166 PSESET---LGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 166 ps~~e~---~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
|...++ ++-..++.|--|.-+|-+.-|
T Consensus 245 Plt~~T~~lin~~~l~~MK~ga~lIN~aRG 274 (386)
T PLN02306 245 VLDKTTYHLINKERLALMKKEAVLVNASRG 274 (386)
T ss_pred CCChhhhhhcCHHHHHhCCCCeEEEECCCc
Confidence 333332 466678888877777765444
No 367
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=27.35 E-value=2.6e+02 Score=23.47 Aligned_cols=91 Identities=11% Similarity=0.118 Sum_probs=46.4
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEE-EcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh-----cCCEEEe
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA-----SGDVFVM 165 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~-----~ad~~l~ 165 (294)
..+..+|. ..-|.+.+..+.+ .+++.+.- +|..+....+ +..++.++.. ..+++..++. ..|+++.
T Consensus 5 lrVAIIGt--G~IGt~hm~~l~~-~~~velvAVvdid~es~gl-a~A~~~Gi~~----~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGS--GNIGTDLMIKILR-SEHLEPGAMVGIDPESDGL-ARARRLGVAT----SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcC--cHHHHHHHHHHhc-CCCcEEEEEEeCChhhHHH-HHHHHcCCCc----ccCCHHHHHhCcCCCCCCEEEE
Confidence 45666662 1223344444444 67777764 4544332222 2233333321 1244555554 4677777
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeec
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
.+..+.----...+...|+.||...
T Consensus 77 AT~a~~H~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 77 ATSAGAHVRHAAKLREAGIRAIDLT 101 (302)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEECC
Confidence 5543322333556788899988754
No 368
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=27.08 E-value=1.5e+02 Score=23.63 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=36.3
Q ss_pred cHHHHHhhhcCCCeEEEecccchhHHHHH-hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC
Q 022615 129 YREELEKMFTGMPAVFTGMLLGEELSQAY-ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 193 (294)
Q Consensus 129 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~-~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~ 193 (294)
..+..+...+..++... .++.+++ ...|+++..+....----..+++.+|+.|++-..+.
T Consensus 11 ~~e~a~~~a~~~g~~~~-----~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gA 71 (229)
T TIGR03855 11 NPKDAKELAERCGAKIV-----SDFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGA 71 (229)
T ss_pred CHHHHHHHHHHhCCceE-----CCHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCcc
Confidence 34445555554443322 3344444 468988877654444555778999999999854443
No 369
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=27.04 E-value=1.7e+02 Score=21.43 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=25.7
Q ss_pred hhHHHHHhcC----C-EEEeecCCCCcchHHHHHHh-cCCCEEe
Q 022615 151 EELSQAYASG----D-VFVMPSESETLGLVVLEAMS-SGIPVVG 188 (294)
Q Consensus 151 ~~~~~~~~~a----d-~~l~ps~~e~~~~~~~Ea~a-~G~pvI~ 188 (294)
.++.+.+..+ | +++.|.-+...+..+.+|+. .++|+|=
T Consensus 55 GelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VE 98 (146)
T PRK05395 55 GELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIE 98 (146)
T ss_pred HHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEE
Confidence 3444544444 4 56668767777888999985 5899873
No 370
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=27.01 E-value=2e+02 Score=23.54 Aligned_cols=88 Identities=18% Similarity=0.139 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCCcEEEEEcCCccH----HHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhc
Q 022615 107 DFLKRVMDRLPEARIAFIGDGPYR----EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 182 (294)
Q Consensus 107 ~~l~~~~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~ 182 (294)
..+++++..-++..|.-.=..+.. ...-+.. .+..+|..-.+++......+|++|--+..++.-..+-.+..+
T Consensus 16 ~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~---g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~ 92 (266)
T COG0289 16 RTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELA---GLGLLGVPVTDDLLLVKADADVLIDFTTPEATLENLEFALEH 92 (266)
T ss_pred HHHHHHHhcCCCceEEEEEecCCccccccchhhhc---cccccCceeecchhhcccCCCEEEECCCchhhHHHHHHHHHc
Confidence 568888888887766543221111 1111111 111222222345777888999999888877776667778899
Q ss_pred CCCEEeecCCCcccc
Q 022615 183 GIPVVGVRAGGIPDI 197 (294)
Q Consensus 183 G~pvI~~~~~~~~e~ 197 (294)
|+++|....|...+-
T Consensus 93 ~~~lVIGTTGf~~e~ 107 (266)
T COG0289 93 GKPLVIGTTGFTEEQ 107 (266)
T ss_pred CCCeEEECCCCCHHH
Confidence 999887666544443
No 371
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=26.97 E-value=86 Score=25.24 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=33.0
Q ss_pred cHHHHHhhhcCCCeEEEecccchhHHHHHhcCC--EEEeecCCCCcchHHHHHHh-cCCCEEeecCCC
Q 022615 129 YREELEKMFTGMPAVFTGMLLGEELSQAYASGD--VFVMPSESETLGLVVLEAMS-SGIPVVGVRAGG 193 (294)
Q Consensus 129 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad--~~l~ps~~e~~~~~~~Ea~a-~G~pvI~~~~~~ 193 (294)
....+.+++++.++.|.-..-..+-.+++...+ ++=.+|. +-....+++++| .|+|||.|....
T Consensus 57 ~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~-dl~n~~lL~~~A~tgkPvIlSTG~s 123 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASG-DLTNLPLLEYIAKTGKPVILSTGMS 123 (241)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GG-GTT-HHHHHHHHTT-S-EEEE-TT-
T ss_pred HHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccc-cccCHHHHHHHHHhCCcEEEECCCC
Confidence 345666777777877766555555455554444 3333443 444556777665 589999875543
No 372
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=26.94 E-value=2e+02 Score=23.43 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=36.5
Q ss_pred HHHHhhhcCCCeEEEecc-cchhHHHHHhcCCEEEeecCCCCcchHHHHH-HhcCCCEEeecC
Q 022615 131 EELEKMFTGMPAVFTGML-LGEELSQAYASGDVFVMPSESETLGLVVLEA-MSSGIPVVGVRA 191 (294)
Q Consensus 131 ~~~~~~~~~~~v~~~g~~-~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea-~a~G~pvI~~~~ 191 (294)
+.+.+..++.++.+.-.+ +.+++..+...+|++-.++.. .....++++ ...|+||+.+..
T Consensus 79 ~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~d~lkI~s~~-~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 79 KLLRRAADEHGLPVVTEVMDPRDVEIVAEYADILQIGARN-MQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred HHHHHHHHHhCCCEEEeeCChhhHHHHHhhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCC
Confidence 445555666675554443 335555555668988888863 223345554 457999998755
No 373
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=26.55 E-value=2.9e+02 Score=20.92 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=46.4
Q ss_pred HhcCCEEEeecCCCCcchHHHHHH-hcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHH
Q 022615 157 YASGDVFVMPSESETLGLVVLEAM-SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETM 235 (294)
Q Consensus 157 ~~~ad~~l~ps~~e~~~~~~~Ea~-a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~ 235 (294)
+-.||+++.|....-- .||+ .+|+-||+-|...+.... +.... -+ .+.+..++-.+...-...+..
T Consensus 87 Iy~ADVVLVPLEDGDR----~EAL~~mGK~VIaIDLNPLSRTa---r~Ati-tI-----VDni~RA~p~~~~~~~~lk~~ 153 (178)
T PF02006_consen 87 IYSADVVLVPLEDGDR----TEALVKMGKTVIAIDLNPLSRTA---RTATI-TI-----VDNITRAIPNMIEFARELKKK 153 (178)
T ss_pred ceeccEEEeccCCCcH----HHHHHHcCCeEEEEeCCCccccc---ccCce-ee-----ehhHHHHHHHHHHHHHHHhcC
Confidence 3467999999752221 2443 689999999887766555 22211 12 234555554444332222222
Q ss_pred H-HHHHHHHHhCCHHHHHHHHH
Q 022615 236 G-QAARQEMEKYDWRAATRTIR 256 (294)
Q Consensus 236 ~-~~~~~~~~~~s~~~~~~~~~ 256 (294)
. +...+.++.|+-+...+.-+
T Consensus 154 ~~~el~~iv~~~dN~~~L~~al 175 (178)
T PF02006_consen 154 DREELEEIVKNYDNKKNLSEAL 175 (178)
T ss_pred CHHHHHHHHHhcCcHHHHHHHH
Confidence 2 22334456777766555443
No 374
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins.; PDB: 2OHW_A.
Probab=26.05 E-value=80 Score=22.28 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=31.4
Q ss_pred EEEeecccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhhhcCCCeEE
Q 022615 94 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVF 144 (294)
Q Consensus 94 i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~v~~ 144 (294)
-+..+.+....-...+.++++..++.++.|-|.-+. ...+.+++++.++.|
T Consensus 39 alt~~q~~~~~~~~~~~~~l~~~~~~~l~ing~l~~~~~~~YiklA~~~~~~f 91 (120)
T PF07997_consen 39 ALTKEQVEEPDIYPEFEQALKDYPNYKLKINGNLDYSFQSKYIKLANKHGIPF 91 (120)
T ss_dssp EEEHHHHTSSS--HHHHHHHHC-SSEEEEEETTS-HHHHHHHHHHHHHTT--E
T ss_pred eecHHHHhChhHHHHHHHHHhhCCCeEEEEcCCCCHHHHHHHHHHHHHcCCCE
Confidence 344455666677788999999999999999997543 344455555555544
No 375
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.99 E-value=1e+02 Score=23.87 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=32.4
Q ss_pred EEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEee
Q 022615 37 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG 98 (294)
Q Consensus 37 ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 98 (294)
|++.........++..|-..+-..++|.|.|+-.|.+........ .+--.|++.|
T Consensus 5 Vvts~~pl~~iv~~I~gd~~~V~~l~p~g~dpH~ye~tp~d~~~l-------~~Adliv~~G 59 (203)
T cd01145 5 VVVTFPDLKDLVREVAGDAVIVSALTPPGVDPHQYQLKPSDIAKM-------RKADLVVTSG 59 (203)
T ss_pred EEEEChHHHHHHHHHcCCcEEEEEecCCCCCcccccCCHHHHHHH-------hcCCEEEEcC
Confidence 555555566666666553223335679999999888764433211 2334577777
No 376
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=25.97 E-value=2.8e+02 Score=25.38 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=42.8
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEeccc--------------chhHHHHHhcCCEEEe--ecCCC---CcchHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLL--------------GEELSQAYASGDVFVM--PSESE---TLGLVVLE 178 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~--------------~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~E 178 (294)
+-++-|+|-|.--..+.+.++..+....++-+ .+++.++++.||++++ |...+ -++...++
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~ 217 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELA 217 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHh
Confidence 45788888887766666666554433322211 1368899999998876 33222 23445666
Q ss_pred HHhcCCCEEee
Q 022615 179 AMSSGIPVVGV 189 (294)
Q Consensus 179 a~a~G~pvI~~ 189 (294)
.|--|.-+|.+
T Consensus 218 ~mk~ga~lIN~ 228 (525)
T TIGR01327 218 KMKKGVIIVNC 228 (525)
T ss_pred cCCCCeEEEEc
Confidence 66666555543
No 377
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=25.59 E-value=3.3e+02 Score=21.37 Aligned_cols=141 Identities=14% Similarity=0.116 Sum_probs=74.2
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHH-HHHhcCCCEEeecCCCccc
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIPVVGVRAGGIPD 196 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~-Ea~a~G~pvI~~~~~~~~e 196 (294)
+.+++++.... .+++..++...++.... .+--.+.+..+++++..+..+...-.+. .|-..|+||=+.|.+...+
T Consensus 35 ga~v~Vvs~~~-~~el~~~~~~~~i~~~~---~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~~~ 110 (210)
T COG1648 35 GADVTVVSPEF-EPELKALIEEGKIKWIE---REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPELCD 110 (210)
T ss_pred CCEEEEEcCCc-cHHHHHHHHhcCcchhh---cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCcccCc
Confidence 56777777655 56677777665543322 1222334444888887776655555544 4556799998887776655
Q ss_pred ccccC--CCCcceeec-CCCC----HHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH
Q 022615 197 IIPED--QDGKIGYLF-NPGD----LDDCLSKLEPLLYN-QELRETMGQAARQEMEK-YDWRAATRTIRNEQYNA 262 (294)
Q Consensus 197 ~~~~~--~~~~~g~~~-~~~d----~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~l~~~ 262 (294)
++-.. ..+.--+.+ +.+. ...+.+.|..++.. -.....+....+..++. ..-......+++.++..
T Consensus 111 f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~~l~~~~~~~~~~~~~~R~~v~~~~~~~~~Rr~~~~~~~~~ 185 (210)
T COG1648 111 FIFPAIVDRGPLQIAISTGGKSPVLARLLREKIEALLPPSLGEVAELAARLRERVKGSLPKGKERRRFWEKIFEG 185 (210)
T ss_pred eecceeeccCCeEEEEECCCCChHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 55111 111111112 2222 34555666666653 22334445556666643 44444444444444443
No 378
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=25.44 E-value=2.8e+02 Score=22.63 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=34.4
Q ss_pred CCeEEEec-ccc---hhHHHHHhcCCEEEeecC-CCCc--chHHHHHHhcCCCEEeecCCC
Q 022615 140 MPAVFTGM-LLG---EELSQAYASGDVFVMPSE-SETL--GLVVLEAMSSGIPVVGVRAGG 193 (294)
Q Consensus 140 ~~v~~~g~-~~~---~~~~~~~~~ad~~l~ps~-~e~~--~~~~~Ea~a~G~pvI~~~~~~ 193 (294)
.+|.+.|. ++. +...+.++.||++|.-.. ..-. ..-+.++...|.|+|.-+...
T Consensus 181 P~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~ 241 (260)
T cd01409 181 PDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGP 241 (260)
T ss_pred CCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCC
Confidence 36777776 444 345677888998887432 2222 233446778999998876543
No 379
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=25.43 E-value=1.9e+02 Score=25.15 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=12.2
Q ss_pred hHHHHHHhcCCCEEeec
Q 022615 174 LVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 174 ~~~~Ea~a~G~pvI~~~ 190 (294)
..++.++.+|+|.|+.+
T Consensus 358 g~~~~yl~ag~p~vvg~ 374 (383)
T PF03568_consen 358 GTPLSYLLAGCPLVVGN 374 (383)
T ss_pred CcHHHHHhcCChheEee
Confidence 34667888888877653
No 380
>PF15586 Imm47: Immunity protein 47
Probab=24.95 E-value=69 Score=22.43 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=19.4
Q ss_pred CcceeecCCCCHHHHHHHHHHHhhC
Q 022615 204 GKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 204 ~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
|..-++++..|.+.+.+.|.++++.
T Consensus 67 gr~~LIv~~yd~~~I~~~i~~~i~~ 91 (116)
T PF15586_consen 67 GRHMLIVEEYDYDEIKKTIERIIES 91 (116)
T ss_pred ccceEEEecCCHHHHHHHHHHHHHH
Confidence 4556677778999999999888763
No 381
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=24.85 E-value=4.2e+02 Score=22.23 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=26.9
Q ss_pred hhHHHHHhcCCEEE--eecCCC------Cc-chHHHHHHhcCCCE-EeecCC
Q 022615 151 EELSQAYASGDVFV--MPSESE------TL-GLVVLEAMSSGIPV-VGVRAG 192 (294)
Q Consensus 151 ~~~~~~~~~ad~~l--~ps~~e------~~-~~~~~Ea~a~G~pv-I~~~~~ 192 (294)
++..++++..++.+ +|+..- ++ -..+-+.+..|+|| |+||.+
T Consensus 223 ~~~i~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~igTD~~ 274 (324)
T TIGR01430 223 PELLKRLAQENITLEVCPTSNVALGVVKSLAEHPLRRFLEAGVKVTLNSDDP 274 (324)
T ss_pred HHHHHHHHHcCceEEECCcccccccccCCcccChHHHHHHCCCEEEECCCCC
Confidence 45778888877665 665421 11 23577889999998 455543
No 382
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=24.85 E-value=3.5e+02 Score=21.42 Aligned_cols=83 Identities=11% Similarity=0.003 Sum_probs=46.5
Q ss_pred CceEEEeecccccccHHHHHHHHHh-CC--CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEee-
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDR-LP--EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP- 166 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~-~~--~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~p- 166 (294)
-.+++.+|..++...-..+.+.+.+ ++ ++.+.++.-... . +... ...-.. .-.++.+.+..||.+|+.
T Consensus 27 ~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~l-P----l~~~-d~~~~p--~v~~l~~~v~~ADgvii~T 98 (219)
T TIGR02690 27 PRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGL-P----LPDA-AHADHP--KVRELRQLSEWSEGQVWCS 98 (219)
T ss_pred CEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccC-C----CCCc-CcccCH--HHHHHHHHHHhCCEEEEeC
Confidence 3578889988776665656655533 33 577777753211 0 0000 000011 126788999999988874
Q ss_pred -cCCCCcchHH---HHHHh
Q 022615 167 -SESETLGLVV---LEAMS 181 (294)
Q Consensus 167 -s~~e~~~~~~---~Ea~a 181 (294)
-+..++|..+ ++.+.
T Consensus 99 PEYn~sipg~LKNaiDwls 117 (219)
T TIGR02690 99 PERHGAITGSQKDQIDWIP 117 (219)
T ss_pred CccccCcCHHHHHHHHhcc
Confidence 4456666554 45554
No 383
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=24.73 E-value=2.8e+02 Score=20.20 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=42.2
Q ss_pred CcceeecCCCCHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHH
Q 022615 204 GKIGYLFNPGDLDDCLSKLEPLLY--NQELRETMGQAARQEMEK--YDWRAATRTIRNEQYNAAIWFWR 268 (294)
Q Consensus 204 ~~~g~~~~~~d~~~l~~~i~~ll~--~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~l~~~~~~~~~ 268 (294)
.++|+.+..+||=-+...+...+- +....+.+-.+-++..+. ..|..-++.-.+.+.+..+...+
T Consensus 14 ~KHGIal~rDDPILilqTiNerLlees~kAQq~mL~~FkeelE~iasrW~~dak~KAEkiLnaaLaaSK 82 (144)
T PRK13895 14 AKHGIAVGRDDPILILQTINDRLMQDSAKAQQEMLDQFKEELESIASRWGDDAKEKAERILNAALAASK 82 (144)
T ss_pred HHcCcccCCCCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH
Confidence 567888999999888888877553 333445555555555543 56777666666666665554433
No 384
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=24.65 E-value=1.2e+02 Score=21.66 Aligned_cols=40 Identities=13% Similarity=-0.021 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccC-CcCceEEeec
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVT-AANKIRIWKK 64 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~-~~~~i~~i~~ 64 (294)
.+....+..+|.||+......+.+...++. ...++..+..
T Consensus 68 ~l~~~~~~~~D~Ii~m~~~~~~~~~~~~~~~~~~kv~~l~~ 108 (138)
T PF01451_consen 68 QLTEEDLDEADLIITMDDSHREELCPLFPGDYRAKVFLLGE 108 (138)
T ss_dssp BGGHHHHHHSSEEEESSHHHHHHHHHHHGTTGGGCEEEGGG
T ss_pred cccccccccCCEEEEccHHHhhhhhhhcchhhhhhheeccc
Confidence 455566889999999999998888887765 3456666643
No 385
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=24.40 E-value=3.2e+02 Score=23.66 Aligned_cols=14 Identities=7% Similarity=0.226 Sum_probs=6.5
Q ss_pred hHHHHHhcCCEEEe
Q 022615 152 ELSQAYASGDVFVM 165 (294)
Q Consensus 152 ~~~~~~~~ad~~l~ 165 (294)
+..+....||+++.
T Consensus 135 ~~~~~~~~aDlVil 148 (374)
T PRK11199 135 RAEDILADAGMVIV 148 (374)
T ss_pred hHHHHHhcCCEEEE
Confidence 33444455555444
No 386
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=24.24 E-value=3.5e+02 Score=21.17 Aligned_cols=100 Identities=22% Similarity=0.241 Sum_probs=49.4
Q ss_pred CCceEEEeecccccccHHHHHH--HHHhC-CCcEEEEEcCCcc--HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEE
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKR--VMDRL-PEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 164 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~--~~~~~-~~~~l~i~G~~~~--~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l 164 (294)
...+++++|.- ..|-|-++- .+... -++++...|+... .+......+..++- +.+...+.......+|++|
T Consensus 49 ~~~v~vlcG~G--nNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~--~~v~~~~~~~~~~~~dvIV 124 (203)
T COG0062 49 ARRVLVLCGPG--NNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIG--GVVKIKELEDEPESADVIV 124 (203)
T ss_pred CCEEEEEECCC--CccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCC--cceeecccccccccCCEEE
Confidence 34467777744 333343332 22222 3678888886431 22222221111211 1111122222678889988
Q ss_pred eecCCCCcc-------hHHHHHHh-cCCCEEeecCCC
Q 022615 165 MPSESETLG-------LVVLEAMS-SGIPVVGVRAGG 193 (294)
Q Consensus 165 ~ps~~e~~~-------~~~~Ea~a-~G~pvI~~~~~~ 193 (294)
-.-..-|+. -.++|.+- .|+|||+-|.+.
T Consensus 125 DalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPS 161 (203)
T COG0062 125 DALFGTGLSGPLREPFASLIEAINASGKPIVAVDIPS 161 (203)
T ss_pred EeceecCCCCCCccHHHHHHHHHHhcCCceEEEeCCC
Confidence 654333321 23555554 899999988763
No 387
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=23.92 E-value=2.8e+02 Score=23.02 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=36.4
Q ss_pred HHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcCC--CeEEEec-ccchhHHHHHhcCCEEEeec
Q 022615 106 LDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGM--PAVFTGM-LLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 106 ~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~~--~v~~~g~-~~~~~~~~~~~~ad~~l~ps 167 (294)
.+...+|++.+ ++..++|+++.. +.+++.+... .+.+.+. -+.+|+. +++.||..|.+.
T Consensus 190 ~~Yy~~Ai~~i~~~~~~~~f~ifSDD~--~w~k~~l~~~~~~~~~~~~~~~~~Dl~-lms~C~~~Iisn 255 (298)
T PF01531_consen 190 KDYYKKAIEYIREKVKNPKFFIFSDDI--EWCKENLKFSNGDVYFSGNNSPYEDLY-LMSQCKHFIISN 255 (298)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHhhcCCcEEEECCCCHHHHHH-HHHhCCcEEECC
Confidence 35555666544 678999999754 3344333322 3455554 3447776 689999988873
No 388
>PRK14154 heat shock protein GrpE; Provisional
Probab=23.78 E-value=2.9e+02 Score=21.69 Aligned_cols=44 Identities=5% Similarity=0.004 Sum_probs=25.4
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 022615 220 SKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 264 (294)
Q Consensus 220 ~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~ 264 (294)
+.+.++..+-+.+++..++-++.+.+|..+.++..++ .+++.+-
T Consensus 73 d~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LL-pVlDnLe 116 (208)
T PRK14154 73 TQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLL-PVADSLI 116 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhHHH
Confidence 3333444444434444444444456688888888888 6777653
No 389
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=23.72 E-value=3.4e+02 Score=23.02 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=31.1
Q ss_pred eEEEecccchhHHHHHhcCCEEEeecC---CCCcchHHHHHHhcC
Q 022615 142 AVFTGMLLGEELSQAYASGDVFVMPSE---SETLGLVVLEAMSSG 183 (294)
Q Consensus 142 v~~~g~~~~~~~~~~~~~ad~~l~ps~---~e~~~~~~~Ea~a~G 183 (294)
+..+-+++.+.+.+.++.++.++.... ..|++..+.|.++..
T Consensus 235 ~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~ 279 (327)
T PRK09212 235 LRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKE 279 (327)
T ss_pred EecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHh
Confidence 445666777889999999988776532 457788888888754
No 390
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=23.70 E-value=92 Score=19.14 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=36.3
Q ss_pred CCcEEEEEc-CCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 117 PEARIAFIG-DGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 117 ~~~~l~i~G-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
.+..+.+.| ....++.+.+++...+-.+.... -...+.+|.... .....+...+...|+|+|..
T Consensus 7 ~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~--------~~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~ 71 (78)
T PF00533_consen 7 EGCTFCISGFDSDEREELEQLIKKHGGTVSNSF--------SKKTTHVIVGNP-NKRTKKYKAAIANGIPIVSP 71 (78)
T ss_dssp TTEEEEESSTSSSHHHHHHHHHHHTTEEEESSS--------STTSSEEEESSS-HCCCHHHHHHHHTTSEEEET
T ss_pred CCEEEEEccCCCCCHHHHHHHHHHcCCEEEeec--------ccCcEEEEeCCC-CCccHHHHHHHHCCCeEecH
Confidence 456666633 23445666666666554443222 233455554332 23456688889999998865
No 391
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=23.47 E-value=2.9e+02 Score=21.55 Aligned_cols=54 Identities=20% Similarity=0.075 Sum_probs=33.9
Q ss_pred CCCeEEEec-ccc---hhHHHHHhcCCEEEeecC-CCCcc--hHHHHHHhcCCCEEeecCC
Q 022615 139 GMPAVFTGM-LLG---EELSQAYASGDVFVMPSE-SETLG--LVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 139 ~~~v~~~g~-~~~---~~~~~~~~~ad~~l~ps~-~e~~~--~~~~Ea~a~G~pvI~~~~~ 192 (294)
+.+|.+.|. ++. ++..+.++.||++|.-.. ..-.| .-+-++...|.|+|.-+..
T Consensus 131 rP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 131 KDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred CCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 446777776 454 356677788998887432 22222 2234577889999876543
No 392
>PRK14164 heat shock protein GrpE; Provisional
Probab=23.37 E-value=2.9e+02 Score=21.92 Aligned_cols=47 Identities=6% Similarity=-0.014 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 022615 216 DDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 263 (294)
Q Consensus 216 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~ 263 (294)
+++.+.+.++..+-+.+++..++-++.+.+|..+.+++.|+ .+++.+
T Consensus 87 ~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LL-pVlDnL 133 (218)
T PRK14164 87 AERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLL-PILDDL 133 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhHH
Confidence 34555555555555545555555555567799999999999 677766
No 393
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=23.33 E-value=79 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=19.7
Q ss_pred CcchHHHHHHhcCCCE-EeecCCCccccc
Q 022615 171 TLGLVVLEAMSSGIPV-VGVRAGGIPDII 198 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pv-I~~~~~~~~e~~ 198 (294)
..+-.+-.-...|+|| |+||....++.+
T Consensus 64 ~~~evi~~I~~~G~PviVAtDV~p~P~~V 92 (138)
T PF04312_consen 64 SRSEVIEWISEYGKPVIVATDVSPPPETV 92 (138)
T ss_pred CHHHHHHHHHHcCCEEEEEecCCCCcHHH
Confidence 3344455556789997 567888888777
No 394
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=23.23 E-value=2.1e+02 Score=22.95 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=47.8
Q ss_pred HHHHHHHhCC-CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCE
Q 022615 108 FLKRVMDRLP-EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 186 (294)
Q Consensus 108 ~l~~~~~~~~-~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pv 186 (294)
.+++.++.-+ ++.+.++-+.. .++...+... .+.....++.+++...|+++=....+..---..+++..|+++
T Consensus 14 ~l~e~v~~~~~~~e~v~v~D~~-~ek~~~~~~~-----~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~ 87 (255)
T COG1712 14 FLLELVRDGRVDFELVAVYDRD-EEKAKELEAS-----VGRRCVSDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDV 87 (255)
T ss_pred HHHHHHhcCCcceeEEEEecCC-HHHHHHHHhh-----cCCCccccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCE
Confidence 3455555442 45555554432 2333333332 222222677888899999886554444444456788899999
Q ss_pred EeecCCCcc
Q 022615 187 VGVRAGGIP 195 (294)
Q Consensus 187 I~~~~~~~~ 195 (294)
|+-.+|.+.
T Consensus 88 iV~SVGALa 96 (255)
T COG1712 88 IVMSVGALA 96 (255)
T ss_pred EEEechhcc
Confidence 988777665
No 395
>PRK14155 heat shock protein GrpE; Provisional
Probab=23.21 E-value=2.8e+02 Score=21.83 Aligned_cols=47 Identities=6% Similarity=-0.024 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 022615 217 DCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 264 (294)
Q Consensus 217 ~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~ 264 (294)
++.+.+.++..+-+.+++..++-++.+.+|..+.++..|+ .+++.+-
T Consensus 31 elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL-pV~DnLe 77 (208)
T PRK14155 31 ALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLL-GAADNLG 77 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhhHH
Confidence 4444455555554544444444555566788999999998 6777653
No 396
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.20 E-value=4.4e+02 Score=21.86 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCC--CeEEEecc---------------cchhHHHHHhcCCEEEeecCCCCcchHHHHH
Q 022615 117 PEARIAFIGDGPYREELEKMFTGM--PAVFTGML---------------LGEELSQAYASGDVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~--~v~~~g~~---------------~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea 179 (294)
.+-++.|+|.|.--..+...+... +|.+...- +.+++.+++..+|+++......-.+...++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~ 229 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSK 229 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhc
Confidence 356788888776554444444333 23332221 2246778889999999854322233445566
Q ss_pred HhcCCCEE
Q 022615 180 MSSGIPVV 187 (294)
Q Consensus 180 ~a~G~pvI 187 (294)
|.-|.-+|
T Consensus 230 ~k~~aliI 237 (287)
T TIGR02853 230 LPKHAVII 237 (287)
T ss_pred CCCCeEEE
Confidence 65554443
No 397
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=23.08 E-value=2.1e+02 Score=24.37 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCcEEEEEcCCcc-HHHHHhhhcCCCeEEEecc-cchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCC
Q 022615 108 FLKRVMDRLPEARIAFIGDGPY-REELEKMFTGMPAVFTGML-LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 185 (294)
Q Consensus 108 ~l~~~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~-~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~p 185 (294)
.+++.+...|++++..+.+... .+.+.+............+ +.++. ....+|++++..-.+.-...+.++...|++
T Consensus 17 ~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~~~~~~~v~~a~~aG~~ 94 (343)
T PRK00436 17 ELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALPHGVSMDLAPQLLEAGVK 94 (343)
T ss_pred HHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCCcHHHHHHHHHHHhCCCE
Confidence 4666667778888876654221 1122221111110000011 11232 446789988765444444445566678999
Q ss_pred EEee
Q 022615 186 VVGV 189 (294)
Q Consensus 186 vI~~ 189 (294)
||-.
T Consensus 95 VID~ 98 (343)
T PRK00436 95 VIDL 98 (343)
T ss_pred EEEC
Confidence 8853
No 398
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=23.01 E-value=2.3e+02 Score=18.51 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=21.9
Q ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 022615 219 LSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 219 ~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~ 261 (294)
.+.|..-+-....+..+.+--+.......|..-.+++...+.+
T Consensus 3 ~~~i~~~L~~sGe~~~L~~~L~~rL~e~GW~d~vr~~~re~i~ 45 (86)
T PF10163_consen 3 KAQIQQRLVESGEYERLKELLRQRLIECGWRDEVRQLCREIIR 45 (86)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCChHHHHHHHHHHHHH
Confidence 3344443333333555555555555566666666555544433
No 399
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=22.90 E-value=2.8e+02 Score=20.24 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=26.5
Q ss_pred hhHHHHHhcC----C-EEEeecCCCCcchHHHHHHh-cCCCEEe
Q 022615 151 EELSQAYASG----D-VFVMPSESETLGLVVLEAMS-SGIPVVG 188 (294)
Q Consensus 151 ~~~~~~~~~a----d-~~l~ps~~e~~~~~~~Ea~a-~G~pvI~ 188 (294)
.++.+.+..+ | +++.|.-+...+..+.+|++ .++|+|=
T Consensus 53 GelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vE 96 (141)
T TIGR01088 53 GQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVE 96 (141)
T ss_pred HHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEE
Confidence 3455555544 4 56678777778888999985 6899873
No 400
>KOG2555 consensus AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]
Probab=22.89 E-value=1.9e+02 Score=25.33 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=47.2
Q ss_pred cCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeec-CCCCcchHHHHHHhcCCCEEeecCCCccccc
Q 022615 125 GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGIPDII 198 (294)
Q Consensus 125 G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps-~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~ 198 (294)
|.+++..+++....+. ...++.++-.+++..+.=+.+.| -+-.|+-.+.+|..+|+-.|+.+.|...+-.
T Consensus 496 ~e~~~~~~~~~~fe~~----p~~~t~~e~~ewl~~l~~v~l~SDAFFPF~Dnv~ra~qsGv~yiaaP~GSv~D~~ 566 (588)
T KOG2555|consen 496 GEDPELSQWESKFEEV----PEPLTKEERKEWLEKLKGVSLSSDAFFPFPDNVYRAVQSGVKYIAAPSGSVMDKV 566 (588)
T ss_pred ccCcchhhhhhhhhhc----ccccChHHHHHHHHHhcCceecccccccCchHHHHHHhcCCeEEecCCCcchhHH
Confidence 3456666666555432 33455677777777765444433 3667899999999999999999888765443
No 401
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=22.86 E-value=3.4e+02 Score=20.55 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=45.1
Q ss_pred hhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh-----cCCCEEee-cCCCcccccccCCCCcceeecCCCCHHHHHHH
Q 022615 151 EELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS-----SGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 221 (294)
Q Consensus 151 ~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a-----~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~ 221 (294)
++....+. ..|++++-... +..|..+++.+. ...|+|.- ..............|..+++..+.+.+++..+
T Consensus 36 ~~~~~~~~~~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 115 (226)
T TIGR02154 36 DEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLAR 115 (226)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHH
Confidence 44444443 35787775443 334556666654 24677653 32222211111145677888889999999999
Q ss_pred HHHHhhC
Q 022615 222 LEPLLYN 228 (294)
Q Consensus 222 i~~ll~~ 228 (294)
+..++..
T Consensus 116 i~~~~~~ 122 (226)
T TIGR02154 116 IKAVLRR 122 (226)
T ss_pred HHHHhcc
Confidence 9887653
No 402
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=22.83 E-value=2.9e+02 Score=19.77 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 022615 217 DCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 264 (294)
Q Consensus 217 ~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~ 264 (294)
++.+...++..+-+.+.+....-.+.+..+..+.++..++ .+++.+-
T Consensus 3 ~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll-~v~D~le 49 (137)
T cd00446 3 ELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLL-PVLDNLE 49 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3455556666565555555555555566788888888888 6777653
No 403
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=22.71 E-value=2.2e+02 Score=20.52 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=44.3
Q ss_pred eEEEeecccccccHHHHHHHHHhC---CCcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe--e
Q 022615 93 LIVHVGRLGVEKSLDFLKRVMDRL---PEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM--P 166 (294)
Q Consensus 93 ~i~~~G~~~~~k~~~~l~~~~~~~---~~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~--p 166 (294)
+++..|..++.-+-..+.+.+.+. .++.+.++--... ...+...... .......+ +++.+.+..||.+|+ |
T Consensus 3 ilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~-~~~~~d~~--~~~~~~l~~aD~iI~~sP 79 (152)
T PF03358_consen 3 ILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFEC-PCYIPDDV--QELYDKLKEADGIIFASP 79 (152)
T ss_dssp EEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHH-TGCTSHHH--HHHHHHHHHSSEEEEEEE
T ss_pred EEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhccccccc-ccCCcHHH--HHHHhceecCCeEEEeec
Confidence 567788887666666666655432 2566655532221 1111111100 00001111 677888999998776 4
Q ss_pred cCCCCcchH---HHHHHh
Q 022615 167 SESETLGLV---VLEAMS 181 (294)
Q Consensus 167 s~~e~~~~~---~~Ea~a 181 (294)
.+..+.+.. ++|-+.
T Consensus 80 ~y~~~~s~~lK~~lD~~~ 97 (152)
T PF03358_consen 80 VYNGSVSGQLKNFLDRLS 97 (152)
T ss_dssp EBTTBE-HHHHHHHHTHH
T ss_pred EEcCcCChhhhHHHHHhc
Confidence 455555543 466665
No 404
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=22.56 E-value=1.9e+02 Score=17.36 Aligned_cols=65 Identities=25% Similarity=0.319 Sum_probs=35.9
Q ss_pred CCcEEEEEc--CCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 117 PEARIAFIG--DGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 117 ~~~~l~i~G--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
.+..+.+.| .....+.+.+++...+-.+...++.. .+..+|.... +........+...|+|+|..
T Consensus 4 ~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~-------~~thvi~~~~-~~~~~~~~~~~~~~~~iV~~ 70 (80)
T smart00292 4 KGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSK-------TTTHVIVGSP-EGGKLELLLAIALGIPIVTE 70 (80)
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCcc-------ceeEEEEcCC-CCccHHHHHHHHcCCCCccH
Confidence 456777777 34566677777766554443333221 3445554432 11122267788888888854
No 405
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=22.54 E-value=1.5e+02 Score=21.20 Aligned_cols=40 Identities=10% Similarity=-0.025 Sum_probs=28.2
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeecc
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 65 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g 65 (294)
+....+..+|.||+.+....+.+...++....++..+...
T Consensus 69 l~~~~~~~aDlIi~m~~~~~~~~~~~~~~~~~~v~~~~~~ 108 (141)
T cd00115 69 LTEDDFDEFDLIITMDESNLAELLEPPPGGRAKVELLGEY 108 (141)
T ss_pred CCHHHHHhCCEEEEECHHHHHHHHhcCCCCcceEEeHhhh
Confidence 4445678999999999999888866554444566656543
No 406
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.50 E-value=2.9e+02 Score=22.46 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=36.9
Q ss_pred HHHHhhhcCCCeEEEecc-cchhHHHHHhcCCEEEeecCCCCcchHHHHHH-hcCCCEEeecC
Q 022615 131 EELEKMFTGMPAVFTGML-LGEELSQAYASGDVFVMPSESETLGLVVLEAM-SSGIPVVGVRA 191 (294)
Q Consensus 131 ~~~~~~~~~~~v~~~g~~-~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~-a~G~pvI~~~~ 191 (294)
+.+.+..++.++.+.-.+ +..++..+...+|++-.++.. .....+++++ ..|+||+.+..
T Consensus 69 ~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vdilqIgs~~-~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 69 RYLHEVCQEFGLLSVSEIMSERQLEEAYDYLDVIQVGARN-MQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCCEEEECccc-ccCHHHHHHHHccCCeEEEeCC
Confidence 344455555565444333 445666666779999888862 2234566655 57999997754
No 407
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=22.17 E-value=4.3e+02 Score=21.99 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHHHhcCCEEEeecCC-------------CCc--chHHHHHHhcCCCEEeec
Q 022615 153 LSQAYASGDVFVMPSES-------------ETL--GLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 153 ~~~~~~~ad~~l~ps~~-------------e~~--~~~~~Ea~a~G~pvI~~~ 190 (294)
..+.++.||++++|... ... ....++.|--|..+++.-
T Consensus 49 ~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~~G~ 101 (296)
T PRK08306 49 LEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIFSGI 101 (296)
T ss_pred HHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEEEec
Confidence 35678999999988321 111 245788888897676543
No 408
>cd00040 CSF2 Granulocyte Macrophage Colony Stimulating Factor (GM-CSF) is a member of the large family of polypeptide growth factors called cytokines. It stimulates a wide variety of hematopoietic and nonhematopoietic cell types via binding to members of the cytokine receptor family, mainly the GM-CSF receptor.
Probab=22.05 E-value=2.5e+02 Score=19.40 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHH--HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhcCC
Q 022615 215 LDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRA--ATRTIRNEQYNAAIWFWRKKRAQLLRPIQWLAKRIFPS 288 (294)
Q Consensus 215 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (294)
.+.+.+++.-+-+..+....|.+ ..+.+ +.|+.+. ..+.-+ .+|++-+...-.+=.-.+.-++.+++.-||-
T Consensus 16 VdAikEAl~lLn~s~d~~avmne-~vevvse~Fd~qepTClQTRL-~LYkqGLrGsltkLkg~LtmmAshYkqhCpp 90 (121)
T cd00040 16 VDAIKEALSLLNNSNDTAAVMNE-TVEVVSEMFDPQEPTCLQTRL-KLYKQGLRGSLTKLKGPLTMMASHYKQHCPP 90 (121)
T ss_pred HHHHHHHHHHhhcCCchhhhcch-hHHHHHhccCCCCccHHHHHH-HHHHhhccccHHHhccHHHHHHHHHHhcCCC
Confidence 34455555443332332223333 23344 4577554 455555 6888866544444334455677888887774
No 409
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=22.05 E-value=3.2e+02 Score=21.83 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=33.3
Q ss_pred CCeEEEec-ccc---hhHHHHHhcCCEEEeecC-CCCcch-HHHHHHhcCCCEEeecCCC
Q 022615 140 MPAVFTGM-LLG---EELSQAYASGDVFVMPSE-SETLGL-VVLEAMSSGIPVVGVRAGG 193 (294)
Q Consensus 140 ~~v~~~g~-~~~---~~~~~~~~~ad~~l~ps~-~e~~~~-~~~Ea~a~G~pvI~~~~~~ 193 (294)
.+|.+.|. ++. +...+.++.||++|.-.. ..-.|. .+.+.+..|.|+|.-+...
T Consensus 152 P~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~ 211 (235)
T cd01408 152 PDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREP 211 (235)
T ss_pred CcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCC
Confidence 36777775 444 344466888998887432 233332 3556677899988766543
No 410
>PRK08328 hypothetical protein; Provisional
Probab=22.02 E-value=2.1e+02 Score=22.79 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=30.7
Q ss_pred ccchhHHHHHhcCCEEEeecCCCCcchHHHH--HHhcCCCEEeecCCCccc
Q 022615 148 LLGEELSQAYASGDVFVMPSESETLGLVVLE--AMSSGIPVVGVRAGGIPD 196 (294)
Q Consensus 148 ~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~E--a~a~G~pvI~~~~~~~~e 196 (294)
++.+++.++++.+|+++.....-. ...++. +...|+|+|.....+..-
T Consensus 107 ~~~~~~~~~l~~~D~Vid~~d~~~-~r~~l~~~~~~~~ip~i~g~~~g~~G 156 (231)
T PRK08328 107 LSEENIDEVLKGVDVIVDCLDNFE-TRYLLDDYAHKKGIPLVHGAVEGTYG 156 (231)
T ss_pred CCHHHHHHHHhcCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEeeccCEE
Confidence 344566778899999987654322 222344 568899999876554433
No 411
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=21.90 E-value=3.8e+02 Score=20.65 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=22.8
Q ss_pred HhcCCEEEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 157 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 157 ~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
...-|++++... ..-...+.||..+|+|+|+-
T Consensus 125 ~~~Pdlviv~~~-~~~~~ai~Ea~~l~IP~I~i 156 (193)
T cd01425 125 FRLPDLVIVLDP-RKEHQAIREASKLGIPVIAI 156 (193)
T ss_pred ccCCCEEEEeCC-ccchHHHHHHHHcCCCEEEE
Confidence 345577666543 22367799999999999985
No 412
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=21.87 E-value=3e+02 Score=23.67 Aligned_cols=80 Identities=11% Similarity=0.179 Sum_probs=45.8
Q ss_pred EEEecccchhHHHHHhcCCEEEeec---CCCCcchHHHHHHhcC------CCEEeecCCCcccccccCCCCcceeecCCC
Q 022615 143 VFTGMLLGEELSQAYASGDVFVMPS---ESETLGLVVLEAMSSG------IPVVGVRAGGIPDIIPEDQDGKIGYLFNPG 213 (294)
Q Consensus 143 ~~~g~~~~~~~~~~~~~ad~~l~ps---~~e~~~~~~~Ea~a~G------~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~ 213 (294)
..+-.++.+.+.+..+..+.++... ...|+|..+.|.++-. .|+.---....+ ++. ...-.-...+
T Consensus 263 ~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~--~p~-~~~le~~~~p-- 337 (356)
T PLN02683 263 RSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVP--MPY-AANLERLALP-- 337 (356)
T ss_pred CCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcC--CCc-cHHHHHhhCC--
Confidence 3455667778889999998776653 2467888888888554 355422111111 100 0000111233
Q ss_pred CHHHHHHHHHHHhh
Q 022615 214 DLDDCLSKLEPLLY 227 (294)
Q Consensus 214 d~~~l~~~i~~ll~ 227 (294)
+.+.+.+++.+++.
T Consensus 338 ~~~~i~~a~~~~~~ 351 (356)
T PLN02683 338 QVEDIVRAAKRACY 351 (356)
T ss_pred CHHHHHHHHHHHHH
Confidence 77888888888864
No 413
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=21.77 E-value=2.6e+02 Score=23.42 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=46.5
Q ss_pred CCCeEEEecccchhHH--HHHhcCCEEEeecCCCC-cchHHHHH-----HhcCCCEEee--cCCCcccccccCCCCccee
Q 022615 139 GMPAVFTGMLLGEELS--QAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGY 208 (294)
Q Consensus 139 ~~~v~~~g~~~~~~~~--~~~~~ad~~l~ps~~e~-~~~~~~Ea-----~a~G~pvI~~--~~~~~~e~~~~~~~~~~g~ 208 (294)
..++...|+++-|.+- ..+...|++|.-+..-| .|.|++.. +..|+|+|-| |.|..-++. |+.
T Consensus 211 ~~gi~v~GP~paDt~F~~~~~~~fD~vvaMYHDQGlip~K~l~f~~gVnvTlGLP~iRTS~DHGTAfDIA-----Gkg-- 283 (298)
T PF04166_consen 211 AEGIDVFGPYPADTVFGKANRGKFDAVVAMYHDQGLIPFKLLGFDEGVNVTLGLPIIRTSPDHGTAFDIA-----GKG-- 283 (298)
T ss_dssp HTTHEEEEEE-HHHHTSHHHHTT-SEEEESSHHHHHHHHHHHCTTTSEEEEESSSSEEEEESS-S-CCGT-----TTT--
T ss_pred hCCCceECCCccHHhhhcchhccCCEEEEeecccCccceeecccccceEEecCCCeeeecCCCCchhhhh-----CCC--
Confidence 4578999999888654 67778899987654322 34555433 4568998865 445555655 322
Q ss_pred ecCCCCHHHHHHHHHHH
Q 022615 209 LFNPGDLDDCLSKLEPL 225 (294)
Q Consensus 209 ~~~~~d~~~l~~~i~~l 225 (294)
. .|+.++.++|...
T Consensus 284 -~--A~~~s~~~Ai~~A 297 (298)
T PF04166_consen 284 -I--ADPSSMIEAIKLA 297 (298)
T ss_dssp -T--S-THHHHHHHHHH
T ss_pred -C--CChHHHHHHHHHh
Confidence 1 2778888888643
No 414
>PLN03139 formate dehydrogenase; Provisional
Probab=21.68 E-value=2.2e+02 Score=24.89 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=43.3
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCC--eEEEecc-------------cchhHHHHHhcCCEEEe--ecCCC---CcchHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMP--AVFTGML-------------LGEELSQAYASGDVFVM--PSESE---TLGLVVL 177 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~-------------~~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~ 177 (294)
+-++-|+|-|.--..+.+.+...+ |...... ..+++.++++.||++++ |...+ -++-..+
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 278 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERI 278 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHH
Confidence 456778887776666666555443 2222211 11478899999998876 32222 2345567
Q ss_pred HHHhcCCCEEeecC
Q 022615 178 EAMSSGIPVVGVRA 191 (294)
Q Consensus 178 Ea~a~G~pvI~~~~ 191 (294)
..|--|.-+|.+.-
T Consensus 279 ~~mk~ga~lIN~aR 292 (386)
T PLN03139 279 AKMKKGVLIVNNAR 292 (386)
T ss_pred hhCCCCeEEEECCC
Confidence 77766666665433
No 415
>PRK06270 homoserine dehydrogenase; Provisional
Probab=21.49 E-value=4.6e+02 Score=22.37 Aligned_cols=41 Identities=20% Similarity=0.043 Sum_probs=26.0
Q ss_pred hhHHHHHh--cCCEEEeecC--CC-Cc--chHHHHHHhcCCCEEeecC
Q 022615 151 EELSQAYA--SGDVFVMPSE--SE-TL--GLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 151 ~~~~~~~~--~ad~~l~ps~--~e-~~--~~~~~Ea~a~G~pvI~~~~ 191 (294)
.++.+++. ..|+++-.+. .. +- -.-+.+++..|++||+.+.
T Consensus 79 ~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK 126 (341)
T PRK06270 79 ISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNK 126 (341)
T ss_pred CCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCc
Confidence 35666664 4688877432 21 11 2335799999999999653
No 416
>PRK09190 hypothetical protein; Provisional
Probab=21.48 E-value=4.2e+02 Score=21.05 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=50.1
Q ss_pred cHHHHHHHHHhCCCcEEEEEcC---CccHHHHHhhhcC------CCeEEEecccchhHHHHHhcCCEEEeecCCCCcchH
Q 022615 105 SLDFLKRVMDRLPEARIAFIGD---GPYREELEKMFTG------MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 175 (294)
Q Consensus 105 ~~~~l~~~~~~~~~~~l~i~G~---~~~~~~~~~~~~~------~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~ 175 (294)
|.+.+.++++.- .+.++|+.. ....+.+...... .+|.+....+.+++...+......+..-...+|...
T Consensus 115 G~~~V~~alk~g-k~~Lvi~A~DaS~~t~kKl~~~~~~~~~~~~~~Vp~v~~~tk~eLg~AlGr~~~~~vav~d~gfA~~ 193 (220)
T PRK09190 115 GFEKVDAALRSG-EAAALIHASDGAADGKRKLDQARRALVHETGREIPVIGLFTAAELGLAFGRENVIHAALLAGGAAER 193 (220)
T ss_pred cHHHHHHHHHcC-CceEEEEeccCChhHHHHHHHHHHhhcccccCCccEEEecCHHHHHHHhCCCceeEEEEcChHHHHH
Confidence 455555555543 467777753 2345666666655 567777788889999999988776666666677766
Q ss_pred HHHHH
Q 022615 176 VLEAM 180 (294)
Q Consensus 176 ~~Ea~ 180 (294)
+++.+
T Consensus 194 l~~~~ 198 (220)
T PRK09190 194 VVKRA 198 (220)
T ss_pred HHHHH
Confidence 66554
No 417
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=21.41 E-value=2.7e+02 Score=23.26 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=41.0
Q ss_pred eEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHHHHHHHHHh
Q 022615 36 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 115 (294)
Q Consensus 36 ~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~ 115 (294)
.|++....+.+..++..|-..+-..++|.|.|+-.|.+......... +--.+++.|.- ... ++.+.++.
T Consensus 34 ~Vvtt~~~~~d~~~~I~gd~~~V~~iv~~g~dpH~yepsp~di~~i~-------~ADliv~nG~~-le~---w~~k~~~~ 102 (303)
T COG0803 34 KVVTTFPPIADVVKNIAGDKVDVVSLVPPGADPHSYEPTPSDIAKLR-------KADLIVYNGLG-LEP---WLEKLLES 102 (303)
T ss_pred eEEEecHHHHHHHHHhcCCceeEEEecCCCCCCcCCCCCHHHHHHHH-------hCCEEEEcCCC-hHH---HHHHHHHh
Confidence 45555666666666766644334457899999999988655433221 33356666633 222 35555555
Q ss_pred CC
Q 022615 116 LP 117 (294)
Q Consensus 116 ~~ 117 (294)
.+
T Consensus 103 ~~ 104 (303)
T COG0803 103 AD 104 (303)
T ss_pred cc
Confidence 53
No 418
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.20 E-value=5.8e+02 Score=22.58 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=51.3
Q ss_pred hhHHHHHhcCCEEEeecCCCCcc---hHHHH-HHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 151 EELSQAYASGDVFVMPSESETLG---LVVLE-AMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~---~~~~E-a~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
+.+...++..|++++.-+..|.= ..+++ |=.+|+||++-+-|.--+. +....+++| +..++.+.+....
T Consensus 135 ~~~~~~l~~~~~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvDPKg~Df~~------Y~GAtLiTP-N~~E~~~~vg~~~ 207 (467)
T COG2870 135 EKIKNALKSFDALVLSDYAKGVLTNVQKMIDLAREAGIPVLVDPKGKDFEK------YRGATLITP-NLKEFEEAVGKCK 207 (467)
T ss_pred HHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHcCCcEEECCCCcchhh------hCCCeecCC-CHHHHHHHHcccc
Confidence 45677888899999887654432 23333 4478999998766533222 223334554 6778887776654
Q ss_pred hChHHHHHHHHHHHHHHHhCC
Q 022615 227 YNQELRETMGQAARQEMEKYD 247 (294)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~s 247 (294)
.. +++.+.+++..+.|.
T Consensus 208 ~e----~el~~~g~kL~~~~~ 224 (467)
T COG2870 208 SE----EELEERGQKLKEELD 224 (467)
T ss_pred cH----HHHHHHHHHHHHhhC
Confidence 33 334445555554443
No 419
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=21.19 E-value=7.8e+02 Score=24.05 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=58.2
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc----CCEEEeecCCCCcchHHHHHH---hcCCCEEeecC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS----GDVFVMPSESETLGLVVLEAM---SSGIPVVGVRA 191 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~l~ps~~e~~~~~~~Ea~---a~G~pvI~~~~ 191 (294)
++.++.+.+. ...+...+...+....+.-+.++....+.. .|++++ ...+..+..+++.+ ....|+|....
T Consensus 699 ~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll-~~~~~~g~~l~~~l~~~~~~ipIIvls~ 777 (828)
T PRK13837 699 TVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV-DDRLLDEEQAAAALHAAAPTLPIILGGN 777 (828)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE-CCCCCCHHHHHHHHHhhCCCCCEEEEeC
Confidence 4555554332 334444444445444454444666666543 588887 33333344444433 34578775432
Q ss_pred CC----cccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 192 GG----IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 192 ~~----~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.. ..+.. ..| .+++..|-+.+++...|..++.
T Consensus 778 ~~~~~~~~~~~---~~G-~d~L~KP~~~~~L~~~l~~~l~ 813 (828)
T PRK13837 778 SKTMALSPDLL---ASV-AEILAKPISSRTLAYALRTALA 813 (828)
T ss_pred CCchhhhhhHh---hcc-CcEEeCCCCHHHHHHHHHHHHc
Confidence 22 22233 445 8889999999999999988764
No 420
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=21.10 E-value=1.3e+02 Score=25.36 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=49.4
Q ss_pred CCCeEEEecccchhHH--HHHhcCCEEEeecCCCC-cchHHHHH-----HhcCCCEEeec--CCCcccccccCCCCccee
Q 022615 139 GMPAVFTGMLLGEELS--QAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGVR--AGGIPDIIPEDQDGKIGY 208 (294)
Q Consensus 139 ~~~v~~~g~~~~~~~~--~~~~~ad~~l~ps~~e~-~~~~~~Ea-----~a~G~pvI~~~--~~~~~e~~~~~~~~~~g~ 208 (294)
..++...|.+|-|.+- ......|++|.-+..-| .|.|++.. +..|+|+|-|. .|..-++. |. |.
T Consensus 230 ~~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIA-----Gk-g~ 303 (320)
T TIGR00557 230 AEGIDLIGPLPADTLFHPAALAKYDAVLAMYHDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAFDIA-----GK-GK 303 (320)
T ss_pred HCCCcccCCCCchhhcccccccCCCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhh-----cC-CC
Confidence 3467778998887654 44567899998766433 46666533 46799998764 34444444 22 22
Q ss_pred ecCCCCHHHHHHHHHHH
Q 022615 209 LFNPGDLDDCLSKLEPL 225 (294)
Q Consensus 209 ~~~~~d~~~l~~~i~~l 225 (294)
.|..++.++|...
T Consensus 304 ----A~~~S~~~Ai~~A 316 (320)
T TIGR00557 304 ----ADPGSLIAAIKLA 316 (320)
T ss_pred ----CCHHHHHHHHHHH
Confidence 2778888888765
No 421
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=21.06 E-value=3.2e+02 Score=21.06 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=27.7
Q ss_pred HHHHHhcCCEEEeecCCCCcchHHHHH-HhcCCCEEeecCCCccccc
Q 022615 153 LSQAYASGDVFVMPSESETLGLVVLEA-MSSGIPVVGVRAGGIPDII 198 (294)
Q Consensus 153 ~~~~~~~ad~~l~ps~~e~~~~~~~Ea-~a~G~pvI~~~~~~~~e~~ 198 (294)
..++++.+|+++........-..+-++ ...|+|.|.....+...++
T Consensus 104 ~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v 150 (197)
T cd01492 104 PEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFV 150 (197)
T ss_pred HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEE
Confidence 456778899988764322222223343 3478999988765554444
No 422
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.87 E-value=2.7e+02 Score=22.98 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=34.7
Q ss_pred EEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEee
Q 022615 37 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG 98 (294)
Q Consensus 37 ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 98 (294)
|+++........++..|-..+-..++|.|.|+-.|.+........ .+.-.|++.|
T Consensus 6 Vv~t~~pl~~lv~~I~Gd~v~V~~li~~g~dpH~ye~~p~d~~~l-------~~Adliv~~G 60 (286)
T cd01019 6 VLTSIKPLGFIAAAIMGGVGEVEVLVPPGASPHDYELRPSDARKL-------QEADLVVWIG 60 (286)
T ss_pred EEEecccHHHHHHHHcCCCcceEEecCCCCCccCCCCCHHHHHHH-------HhCCEEEEeC
Confidence 555555566666666664334456789999999998865443322 2344677887
No 423
>PRK08223 hypothetical protein; Validated
Probab=20.86 E-value=3.5e+02 Score=22.53 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=28.2
Q ss_pred cccchhHHHHHhcCCEEEeecCCCCcchH--HH-HHHhcCCCEEeecCCC
Q 022615 147 MLLGEELSQAYASGDVFVMPSESETLGLV--VL-EAMSSGIPVVGVRAGG 193 (294)
Q Consensus 147 ~~~~~~~~~~~~~ad~~l~ps~~e~~~~~--~~-Ea~a~G~pvI~~~~~~ 193 (294)
.++.++..+++..+|+++-....-.+... +. -+..+|+|+|.....+
T Consensus 105 ~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 105 GIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred ccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 34556778889999998844321111221 22 3567899999865433
No 424
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=20.79 E-value=5e+02 Score=22.20 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=50.6
Q ss_pred CCCeEEEecccchhHH--HHHhcCCEEEeecCCCC-cchHHHHH-----HhcCCCEEeec--CCCcccccccCCCCccee
Q 022615 139 GMPAVFTGMLLGEELS--QAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGVR--AGGIPDIIPEDQDGKIGY 208 (294)
Q Consensus 139 ~~~v~~~g~~~~~~~~--~~~~~ad~~l~ps~~e~-~~~~~~Ea-----~a~G~pvI~~~--~~~~~e~~~~~~~~~~g~ 208 (294)
..++...|.+|-|.+- ......|++|.-+..-| .|.|++.. +..|+|+|-|. .|-.-++. |. |.
T Consensus 237 ~~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIA-----Gk-g~ 310 (332)
T PRK00232 237 AEGINLVGPLPADTLFQPAYLGDADAVLAMYHDQGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTALDLA-----GK-GI 310 (332)
T ss_pred hCCCCcCCCCCchhhccccccCCCCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhh-----cC-CC
Confidence 3467778999887654 44567899998776433 46665543 46799998763 34444554 22 22
Q ss_pred ecCCCCHHHHHHHHHHHh
Q 022615 209 LFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 209 ~~~~~d~~~l~~~i~~ll 226 (294)
.|+.++.++|....
T Consensus 311 ----A~~~S~~~Ai~lA~ 324 (332)
T PRK00232 311 ----ADVGSFITALNLAI 324 (332)
T ss_pred ----CCHHHHHHHHHHHH
Confidence 27889999887653
No 425
>PRK14140 heat shock protein GrpE; Provisional
Probab=20.77 E-value=4.1e+02 Score=20.60 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 022615 217 DCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 263 (294)
Q Consensus 217 ~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~ 263 (294)
++.+.+.++..+-+.+++...+-+..+.+|....++..++ .+++.+
T Consensus 55 elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LL-pvlDnL 100 (191)
T PRK14140 55 ELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLL-PALDNF 100 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4445555555554444444444445556788888888888 677765
No 426
>PRK14139 heat shock protein GrpE; Provisional
Probab=20.66 E-value=3.6e+02 Score=20.73 Aligned_cols=48 Identities=6% Similarity=-0.024 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 022615 216 DDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 264 (294)
Q Consensus 216 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~ 264 (294)
+++.+.+.++..+-+.+.+..+.-+..+.+|..+.++..++ .+++.+-
T Consensus 49 ~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LL-pv~DnLe 96 (185)
T PRK14139 49 AELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLL-PVKDSLE 96 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhHHH
Confidence 34455555555555545444444555566788888999988 6777653
No 427
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=20.63 E-value=3.1e+02 Score=19.16 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=48.1
Q ss_pred cccHHHHHHHHHhCCCcEEEEEc-CCcc---HHHHHhhhcCCCeEEEecccchhHHHHHhcC-CEEEeecCCCCcchHHH
Q 022615 103 EKSLDFLKRVMDRLPEARIAFIG-DGPY---REELEKMFTGMPAVFTGMLLGEELSQAYASG-DVFVMPSESETLGLVVL 177 (294)
Q Consensus 103 ~k~~~~l~~~~~~~~~~~l~i~G-~~~~---~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a-d~~l~ps~~e~~~~~~~ 177 (294)
..|.....+++++- .+.++|+. +-+. ...+..+++..+|.+.-.-+.+++....... .+.+..-..+|+...++
T Consensus 28 ~~G~~~v~kaikkg-ka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~a~Gk~~~~svvaI~d~g~a~~~~ 106 (117)
T TIGR03677 28 KKGTNEVTKAVERG-IAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLGAAAGLEVGAASAAIVDEGKAEELL 106 (117)
T ss_pred eEcHHHHHHHHHcC-CccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEEEEchhhhHHHH
Confidence 35677888888763 56666664 4322 3677777777776665555779999888873 44444434456655554
Q ss_pred HH
Q 022615 178 EA 179 (294)
Q Consensus 178 Ea 179 (294)
+.
T Consensus 107 ~~ 108 (117)
T TIGR03677 107 KE 108 (117)
T ss_pred HH
Confidence 43
No 428
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=20.62 E-value=2.5e+02 Score=18.09 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 022615 214 DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 214 d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~ 261 (294)
....+.+++..++ ++.++..+.....++.+.-+.+.....+. .+.+
T Consensus 4 ~~r~f~~q~~~LL-~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~-~vLd 49 (78)
T cd07347 4 QAREFSQQVDHLL-TDAEREQVTRALERYHQERNVDDLVRDLY-LVLD 49 (78)
T ss_pred HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHcC
Confidence 3567888888888 55667888877777776667777776666 4443
No 429
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=20.26 E-value=1.4e+02 Score=20.68 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCcEEEEEc-CCc-cHHHHHhhhcC---C-CeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHH
Q 022615 107 DFLKRVMDRLPEARIAFIG-DGP-YREELEKMFTG---M-PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 180 (294)
Q Consensus 107 ~~l~~~~~~~~~~~l~i~G-~~~-~~~~~~~~~~~---~-~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~ 180 (294)
..+++.+...|++.+..+. ... ....+...... . ++.+.. .+. +.+..+|++++....+...--.-.++
T Consensus 13 ~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~Dvvf~a~~~~~~~~~~~~~~ 87 (121)
T PF01118_consen 13 RELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED----ADP-EELSDVDVVFLALPHGASKELAPKLL 87 (121)
T ss_dssp HHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE----TSG-HHHTTESEEEE-SCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee----cch-hHhhcCCEEEecCchhHHHHHHHHHh
Confidence 3467777778998876554 332 22222222221 1 122222 222 33399999988754333333344556
Q ss_pred hcCCCEEe
Q 022615 181 SSGIPVVG 188 (294)
Q Consensus 181 a~G~pvI~ 188 (294)
..|+.||-
T Consensus 88 ~~g~~ViD 95 (121)
T PF01118_consen 88 KAGIKVID 95 (121)
T ss_dssp HTTSEEEE
T ss_pred hCCcEEEe
Confidence 88887764
No 430
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.15 E-value=4.3e+02 Score=20.64 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=6.6
Q ss_pred EEecccchhHHHHHh
Q 022615 144 FTGMLLGEELSQAYA 158 (294)
Q Consensus 144 ~~g~~~~~~~~~~~~ 158 (294)
+-|-.+..|+...++
T Consensus 101 iPG~~TptEi~~A~~ 115 (201)
T PRK06015 101 LPGAATPSEVMALRE 115 (201)
T ss_pred eCCCCCHHHHHHHHH
Confidence 344444444444443
No 431
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=20.07 E-value=4e+02 Score=24.41 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=40.4
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEeccc-------------chhHHHHHhcCCEEEe--ecCCC---CcchHHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLL-------------GEELSQAYASGDVFVM--PSESE---TLGLVVLEA 179 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~-------------~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea 179 (294)
+-++-|+|-|.--..+.+.++..+..+.++-+ ..++.++++.||++++ |...+ -++...++.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhc
Confidence 45788889887777776666655433333221 1157889999998876 33211 233344555
Q ss_pred HhcCCCEE
Q 022615 180 MSSGIPVV 187 (294)
Q Consensus 180 ~a~G~pvI 187 (294)
|--|.-+|
T Consensus 220 mk~ga~lI 227 (526)
T PRK13581 220 MKPGVRII 227 (526)
T ss_pred CCCCeEEE
Confidence 54444443
No 432
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=20.03 E-value=5.1e+02 Score=21.48 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=28.4
Q ss_pred hhHHHHHh--cCCEEEeecC-CCCcchHHHHHHh--cCCCEEe
Q 022615 151 EELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS--SGIPVVG 188 (294)
Q Consensus 151 ~~~~~~~~--~ad~~l~ps~-~e~~~~~~~Ea~a--~G~pvI~ 188 (294)
.++.+.++ .+|++|-.|. ...|.--+++.|+ |..|+|-
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 57888888 7789888775 4567777888887 4667763
Done!