Query 022615
Match_columns 294
No_of_seqs 293 out of 1162
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 08:21:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 100.0 1.6E-36 5.5E-41 260.1 25.8 241 21-267 128-383 (394)
2 3c48_A Predicted glycosyltrans 100.0 1.6E-36 5.5E-41 263.9 23.1 238 24-266 175-428 (438)
3 2jjm_A Glycosyl transferase, g 100.0 1.8E-35 6.3E-40 253.8 26.3 237 22-267 145-389 (394)
4 3fro_A GLGA glycogen synthase; 100.0 4.9E-36 1.7E-40 260.6 19.7 234 25-265 180-432 (439)
5 2r60_A Glycosyl transferase, g 100.0 3.9E-35 1.3E-39 259.3 22.5 242 25-270 182-466 (499)
6 3oy2_A Glycosyltransferase B73 100.0 1.2E-35 4.1E-40 256.5 16.7 228 27-268 125-395 (413)
7 1rzu_A Glycogen synthase 1; gl 100.0 3.8E-35 1.3E-39 258.5 19.1 236 25-267 198-479 (485)
8 2qzs_A Glycogen synthase; glyc 100.0 2.4E-34 8.3E-39 253.3 20.9 237 25-268 196-481 (485)
9 2gek_A Phosphatidylinositol ma 100.0 7.2E-35 2.5E-39 250.9 14.1 225 28-267 155-387 (406)
10 2iw1_A Lipopolysaccharide core 100.0 1E-33 3.5E-38 241.1 19.3 231 25-263 126-371 (374)
11 3s28_A Sucrose synthase 1; gly 100.0 2.8E-33 9.5E-38 255.4 21.6 233 27-263 468-769 (816)
12 2x6q_A Trehalose-synthase TRET 100.0 2.1E-32 7.3E-37 236.4 23.4 228 24-264 166-415 (416)
13 3vue_A GBSS-I, granule-bound s 100.0 6.9E-33 2.3E-37 245.0 20.7 234 25-264 233-512 (536)
14 2iuy_A Avigt4, glycosyltransfe 100.0 2.7E-33 9.2E-38 235.9 15.2 203 34-265 120-337 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 2E-31 6.7E-36 229.2 8.6 218 24-264 183-410 (413)
16 2bfw_A GLGA glycogen synthase; 100.0 8.2E-30 2.8E-34 198.4 16.5 180 62-247 2-200 (200)
17 3qhp_A Type 1 capsular polysac 100.0 1.3E-29 4.6E-34 191.3 15.0 158 91-254 2-166 (166)
18 2hy7_A Glucuronosyltransferase 100.0 7.6E-31 2.6E-35 225.5 8.5 205 21-264 166-380 (406)
19 1uqt_A Alpha, alpha-trehalose- 100.0 1.1E-28 3.9E-33 214.7 9.5 197 56-263 218-454 (482)
20 3nb0_A Glycogen [starch] synth 100.0 7.5E-27 2.6E-31 205.0 19.9 238 24-267 251-637 (725)
21 2f9f_A First mannosyl transfer 99.9 3E-27 1E-31 180.2 13.2 140 88-231 20-165 (177)
22 2vsy_A XCC0866; transferase, g 99.9 1.9E-26 6.6E-31 206.8 16.5 208 33-266 328-562 (568)
23 3beo_A UDP-N-acetylglucosamine 99.9 7.1E-27 2.4E-31 199.0 12.6 220 25-260 141-373 (375)
24 3t5t_A Putative glycosyltransf 99.9 5.6E-25 1.9E-29 189.6 20.2 222 30-261 204-472 (496)
25 1vgv_A UDP-N-acetylglucosamine 99.9 4.5E-27 1.5E-31 200.9 6.6 229 26-266 133-379 (384)
26 1f0k_A MURG, UDP-N-acetylgluco 99.9 2.6E-25 9E-30 188.6 12.5 209 25-263 133-357 (364)
27 3rhz_A GTF3, nucleotide sugar 99.9 2E-24 6.9E-29 179.8 16.1 208 23-263 123-337 (339)
28 2xci_A KDO-transferase, 3-deox 99.9 3.2E-23 1.1E-27 176.1 13.1 197 26-245 146-362 (374)
29 1v4v_A UDP-N-acetylglucosamine 99.9 5.7E-21 2E-25 162.6 14.7 219 25-264 138-365 (376)
30 3dzc_A UDP-N-acetylglucosamine 99.7 3.6E-18 1.2E-22 146.0 10.2 217 25-256 157-391 (396)
31 3ot5_A UDP-N-acetylglucosamine 99.7 9.5E-18 3.3E-22 143.5 10.8 217 26-256 162-389 (403)
32 3otg_A CALG1; calicheamicin, T 99.6 5.8E-15 2E-19 127.0 13.0 159 89-261 241-408 (412)
33 3s2u_A UDP-N-acetylglucosamine 99.6 4.8E-14 1.7E-18 119.2 18.1 207 26-256 130-352 (365)
34 2iyf_A OLED, oleandomycin glyc 99.6 5.1E-15 1.7E-19 128.1 11.3 206 33-264 185-402 (430)
35 4hwg_A UDP-N-acetylglucosamine 99.5 1.4E-14 4.6E-19 123.0 6.5 218 27-256 140-371 (385)
36 4fzr_A SSFS6; structural genom 99.5 1.1E-13 3.8E-18 118.5 9.9 155 89-256 226-396 (398)
37 2o6l_A UDP-glucuronosyltransfe 99.4 7.6E-13 2.6E-17 99.5 10.2 131 89-233 20-159 (170)
38 3ia7_A CALG4; glycosysltransfe 99.4 3.3E-12 1.1E-16 109.3 14.0 159 89-261 230-398 (402)
39 3tsa_A SPNG, NDP-rhamnosyltran 99.4 8.1E-13 2.8E-17 112.8 8.7 154 90-256 218-384 (391)
40 2p6p_A Glycosyl transferase; X 99.4 1.1E-11 3.9E-16 105.4 15.4 153 90-256 210-375 (384)
41 3oti_A CALG3; calicheamicin, T 99.3 8.8E-12 3E-16 106.6 12.5 150 90-256 232-393 (398)
42 2yjn_A ERYCIII, glycosyltransf 99.3 7.6E-12 2.6E-16 108.5 9.8 153 91-256 268-431 (441)
43 3rsc_A CALG2; TDP, enediyne, s 99.3 1E-11 3.5E-16 106.8 10.4 157 90-260 247-412 (415)
44 3q3e_A HMW1C-like glycosyltran 99.3 2.5E-11 8.6E-16 106.7 11.6 171 91-269 441-629 (631)
45 2iya_A OLEI, oleandomycin glyc 99.0 1.7E-09 5.7E-14 93.3 12.3 154 90-256 255-417 (424)
46 2gj4_A Glycogen phosphorylase, 99.0 5.2E-08 1.8E-12 88.1 18.9 192 25-218 429-707 (824)
47 1iir_A Glycosyltransferase GTF 99.0 1.9E-09 6.5E-14 92.7 9.0 136 90-241 238-381 (415)
48 2c4m_A Glycogen phosphorylase; 98.9 1E-07 3.4E-12 85.9 18.2 194 25-219 394-677 (796)
49 1l5w_A Maltodextrin phosphoryl 98.8 5.7E-08 2E-12 87.5 12.5 231 26-263 406-730 (796)
50 4gyw_A UDP-N-acetylglucosamine 98.7 8.3E-07 2.8E-11 81.2 18.9 179 88-270 520-712 (723)
51 1rrv_A Glycosyltransferase GTF 98.7 3.2E-08 1.1E-12 85.0 8.0 135 90-240 237-381 (416)
52 3h4t_A Glycosyltransferase GTF 98.7 6.7E-08 2.3E-12 82.7 9.4 152 89-256 220-378 (404)
53 4amg_A Snogd; transferase, pol 98.6 9.4E-08 3.2E-12 81.5 7.2 152 90-256 237-396 (400)
54 3l7i_A Teichoic acid biosynthe 98.3 2.1E-05 7.3E-10 72.3 15.9 218 30-263 475-718 (729)
55 3hbm_A UDP-sugar hydrolase; PS 98.2 6.6E-06 2.3E-10 66.3 9.5 92 92-191 159-252 (282)
56 3hbf_A Flavonoid 3-O-glucosylt 98.2 3.2E-05 1.1E-09 66.8 13.9 199 30-242 212-427 (454)
57 2pq6_A UDP-glucuronosyl/UDP-gl 98.1 6.3E-05 2.2E-09 65.7 13.7 144 90-243 295-453 (482)
58 2c1x_A UDP-glucose flavonoid 3 98.0 9.1E-05 3.1E-09 64.2 13.6 142 89-243 270-426 (456)
59 2vch_A Hydroquinone glucosyltr 97.8 0.00082 2.8E-08 58.6 15.1 131 89-228 267-429 (480)
60 2acv_A Triterpene UDP-glucosyl 97.7 0.0041 1.4E-07 53.9 18.7 128 89-227 275-424 (463)
61 1psw_A ADP-heptose LPS heptosy 97.6 0.0013 4.5E-08 54.6 13.9 96 89-189 179-286 (348)
62 2gt1_A Lipopolysaccharide hept 97.2 0.01 3.4E-07 48.8 13.9 133 91-228 179-322 (326)
63 3tov_A Glycosyl transferase fa 96.9 0.0065 2.2E-07 50.6 9.8 95 90-189 185-286 (349)
64 2jzc_A UDP-N-acetylglucosamine 96.7 0.007 2.4E-07 46.7 7.9 46 141-192 115-161 (224)
65 1ygp_A Yeast glycogen phosphor 96.6 0.02 6.9E-07 52.2 11.3 122 89-211 598-760 (879)
66 2nzw_A Alpha1,3-fucosyltransfe 91.1 2.1 7.3E-05 35.5 10.2 102 132-236 198-308 (371)
67 1rcu_A Conserved hypothetical 85.5 0.87 3E-05 34.1 4.0 70 154-225 113-192 (195)
68 3ijp_A DHPR, dihydrodipicolina 84.1 1.3 4.6E-05 35.3 4.7 98 91-193 21-122 (288)
69 4f3y_A DHPR, dihydrodipicolina 84.0 1 3.6E-05 35.7 4.1 84 107-194 21-108 (272)
70 3jte_A Response regulator rece 81.9 6.7 0.00023 26.8 7.5 108 119-229 4-124 (143)
71 3nhm_A Response regulator; pro 81.4 9.7 0.00033 25.5 11.7 106 119-228 5-122 (133)
72 3hzh_A Chemotaxis response reg 81.2 7.7 0.00026 27.2 7.7 74 151-227 71-156 (157)
73 3kcn_A Adenylate cyclase homol 80.7 12 0.0004 25.9 8.8 108 119-230 5-125 (151)
74 3h5i_A Response regulator/sens 80.0 12 0.0004 25.5 11.4 108 118-228 5-124 (140)
75 3gl9_A Response regulator; bet 79.9 11 0.00036 25.0 8.5 108 120-227 4-121 (122)
76 3gt7_A Sensor protein; structu 79.6 13 0.00044 25.8 9.0 110 118-227 7-126 (154)
77 2qzj_A Two-component response 78.9 13 0.00043 25.2 8.2 107 118-227 4-120 (136)
78 1k68_A Phytochrome response re 78.4 13 0.00043 25.0 9.2 109 119-227 3-130 (140)
79 4ekn_B Aspartate carbamoyltran 77.8 15 0.00051 29.6 8.9 144 21-173 84-233 (306)
80 1dcf_A ETR1 protein; beta-alph 77.2 7.4 0.00025 26.3 6.3 111 118-228 7-129 (136)
81 1p9l_A Dihydrodipicolinate red 76.0 6.1 0.00021 30.7 6.0 74 120-193 2-79 (245)
82 3uuw_A Putative oxidoreductase 75.6 5.5 0.00019 32.0 5.9 90 92-189 7-96 (308)
83 3t6k_A Response regulator rece 75.3 16 0.00055 24.6 8.1 110 119-228 5-124 (136)
84 3kht_A Response regulator; PSI 74.9 17 0.00057 24.7 7.8 107 118-227 5-127 (144)
85 3lua_A Response regulator rece 74.8 5.4 0.00018 27.2 5.1 108 119-229 5-128 (140)
86 3grc_A Sensor protein, kinase; 74.2 17 0.00059 24.5 10.2 108 118-228 6-127 (140)
87 2pln_A HP1043, response regula 73.5 18 0.00061 24.3 8.1 63 160-228 63-133 (137)
88 2zay_A Response regulator rece 73.2 15 0.00051 25.1 7.1 110 118-227 8-127 (147)
89 3h1g_A Chemotaxis protein CHEY 72.9 17 0.00057 24.2 7.2 110 119-228 6-127 (129)
90 3ehd_A Uncharacterized conserv 72.2 7.1 0.00024 28.1 5.1 35 155-189 65-103 (162)
91 4hkt_A Inositol 2-dehydrogenas 72.1 15 0.00052 29.7 7.9 76 108-190 17-94 (331)
92 3lte_A Response regulator; str 72.1 19 0.00064 23.9 8.1 110 119-228 7-125 (132)
93 3euw_A MYO-inositol dehydrogen 71.9 24 0.00083 28.6 9.1 90 92-190 5-96 (344)
94 2gkg_A Response regulator homo 71.6 18 0.00062 23.6 7.9 108 120-228 7-125 (127)
95 3dty_A Oxidoreductase, GFO/IDH 71.6 14 0.00049 30.8 7.7 96 91-189 12-115 (398)
96 3rc1_A Sugar 3-ketoreductase; 71.1 13 0.00045 30.5 7.3 93 90-190 26-120 (350)
97 2j48_A Two-component sensor ki 70.9 18 0.00061 23.2 7.0 105 120-227 3-117 (119)
98 1fy2_A Aspartyl dipeptidase; s 70.8 14 0.00048 28.3 6.9 40 151-191 71-121 (229)
99 4had_A Probable oxidoreductase 70.7 12 0.00042 30.5 7.0 93 90-189 22-116 (350)
100 2czc_A Glyceraldehyde-3-phosph 70.3 10 0.00035 31.0 6.3 82 108-190 16-110 (334)
101 1qkk_A DCTD, C4-dicarboxylate 69.1 25 0.00086 24.2 9.4 107 119-228 4-121 (155)
102 3cea_A MYO-inositol 2-dehydrog 68.9 45 0.0015 27.0 10.6 91 90-189 7-101 (346)
103 3e9m_A Oxidoreductase, GFO/IDH 68.7 23 0.00079 28.6 8.2 91 92-190 6-98 (330)
104 3c3m_A Response regulator rece 68.1 25 0.00084 23.7 9.1 111 119-229 4-124 (138)
105 2jba_A Phosphate regulon trans 67.9 20 0.00069 23.5 6.7 105 120-227 4-121 (127)
106 3i42_A Response regulator rece 67.5 23 0.0008 23.2 8.0 107 119-228 4-122 (127)
107 2qsj_A DNA-binding response re 67.4 21 0.00071 24.6 6.9 108 118-228 3-124 (154)
108 1xvl_A Mn transporter, MNTC pr 66.8 23 0.00078 28.7 7.7 94 149-244 84-184 (321)
109 3dfz_A SIRC, precorrin-2 dehyd 66.4 41 0.0014 25.6 11.1 76 118-198 54-130 (223)
110 1ml4_A Aspartate transcarbamoy 66.3 29 0.00099 27.9 8.0 142 22-173 89-236 (308)
111 3v5n_A Oxidoreductase; structu 66.1 16 0.00056 30.8 7.0 97 90-190 36-141 (417)
112 4ew6_A D-galactose-1-dehydroge 65.8 8.7 0.0003 31.2 5.1 85 91-190 25-112 (330)
113 2rdm_A Response regulator rece 65.8 26 0.00089 23.1 10.8 110 118-229 5-124 (132)
114 2f62_A Nucleoside 2-deoxyribos 65.8 19 0.00064 25.9 6.2 37 154-190 62-105 (161)
115 1xv5_A AGT, DNA alpha-glucosyl 65.6 40 0.0014 25.3 17.0 146 94-243 200-382 (401)
116 3m2t_A Probable dehydrogenase; 65.2 22 0.00074 29.2 7.4 90 92-189 6-98 (359)
117 1mb3_A Cell division response 65.2 26 0.00088 22.8 7.9 105 120-227 3-120 (124)
118 3to5_A CHEY homolog; alpha(5)b 65.1 31 0.001 23.7 7.8 110 118-227 12-132 (134)
119 3crn_A Response regulator rece 64.8 28 0.00095 23.2 8.4 109 119-227 4-120 (132)
120 3heb_A Response regulator rece 64.8 31 0.001 23.6 8.1 105 119-226 5-133 (152)
121 1i3c_A Response regulator RCP1 64.5 31 0.0011 23.6 9.2 109 118-226 8-135 (149)
122 3csu_A Protein (aspartate carb 64.3 28 0.00097 28.0 7.6 138 23-168 88-230 (310)
123 1cf2_P Protein (glyceraldehyde 64.1 13 0.00046 30.3 5.8 40 152-191 71-110 (337)
124 2ho3_A Oxidoreductase, GFO/IDH 64.1 26 0.00089 28.2 7.7 77 108-190 15-93 (325)
125 1ydw_A AX110P-like protein; st 64.1 54 0.0019 26.8 9.7 95 91-190 6-102 (362)
126 3mz0_A Inositol 2-dehydrogenas 63.9 25 0.00087 28.5 7.6 78 108-189 16-96 (344)
127 1h6d_A Precursor form of gluco 63.4 8 0.00027 32.9 4.6 98 90-190 82-181 (433)
128 1jbe_A Chemotaxis protein CHEY 63.4 29 0.00098 22.8 8.3 73 151-226 39-123 (128)
129 2cok_A Poly [ADP-ribose] polym 63.1 7.3 0.00025 26.1 3.4 65 118-190 13-78 (113)
130 3ilh_A Two component response 63.1 32 0.0011 23.2 9.3 112 119-230 10-141 (146)
131 3rqi_A Response regulator prot 62.9 20 0.0007 25.8 6.3 108 118-228 7-125 (184)
132 3cg4_A Response regulator rece 62.8 32 0.0011 23.1 10.6 107 118-227 7-126 (142)
133 1dbw_A Transcriptional regulat 62.7 30 0.001 22.7 9.2 111 118-228 3-121 (126)
134 4fyk_A Deoxyribonucleoside 5'- 62.1 15 0.0005 26.1 5.0 71 155-227 64-141 (152)
135 1zgz_A Torcad operon transcrip 62.1 29 0.001 22.5 7.7 107 120-226 4-117 (122)
136 2qxy_A Response regulator; reg 62.0 31 0.0011 23.2 6.9 110 119-229 5-122 (142)
137 3m6m_D Sensory/regulatory prot 61.2 35 0.0012 23.1 9.4 112 117-228 13-136 (143)
138 2k6g_A Replication factor C su 60.7 33 0.0011 22.7 6.6 38 90-128 34-80 (109)
139 4dad_A Putative pilus assembly 60.6 27 0.00094 23.6 6.4 67 159-228 67-141 (146)
140 1pg5_A Aspartate carbamoyltran 60.1 34 0.0012 27.4 7.4 133 22-168 83-222 (299)
141 1zh8_A Oxidoreductase; TM0312, 60.0 27 0.00092 28.4 7.0 94 89-190 16-113 (340)
142 1f06_A MESO-diaminopimelate D- 59.9 16 0.00055 29.5 5.6 73 108-191 17-90 (320)
143 3e18_A Oxidoreductase; dehydro 59.9 42 0.0014 27.5 8.3 89 92-190 6-96 (359)
144 3db2_A Putative NADPH-dependen 59.7 20 0.00068 29.3 6.2 90 92-190 6-97 (354)
145 3q2i_A Dehydrogenase; rossmann 59.6 33 0.0011 28.0 7.5 91 91-190 13-106 (354)
146 1srr_A SPO0F, sporulation resp 59.5 34 0.0011 22.3 7.8 108 120-227 5-120 (124)
147 2iz6_A Molybdenum cofactor car 59.2 6.2 0.00021 28.9 2.7 67 156-227 104-173 (176)
148 1l7b_A DNA ligase; BRCT, autos 58.4 16 0.00056 23.3 4.3 16 173-188 55-70 (92)
149 3kux_A Putative oxidoreductase 57.9 67 0.0023 26.1 9.2 89 91-189 7-97 (352)
150 3cz5_A Two-component response 57.7 42 0.0014 22.9 8.7 108 118-228 5-125 (153)
151 3n53_A Response regulator rece 57.2 40 0.0014 22.5 11.8 106 119-228 4-122 (140)
152 1dxh_A Ornithine carbamoyltran 56.7 79 0.0027 25.7 9.4 133 22-168 89-233 (335)
153 3e82_A Putative oxidoreductase 56.5 33 0.0011 28.2 7.1 89 91-189 7-97 (364)
154 2gwr_A DNA-binding response re 56.1 62 0.0021 24.3 9.8 109 119-227 6-121 (238)
155 3u3x_A Oxidoreductase; structu 56.1 48 0.0016 27.2 8.0 92 91-190 26-119 (361)
156 3eod_A Protein HNR; response r 56.0 40 0.0014 22.1 7.8 108 118-228 7-126 (130)
157 3cnb_A DNA-binding response re 55.8 43 0.0015 22.4 8.6 108 118-228 8-130 (143)
158 3ohs_X Trans-1,2-dihydrobenzen 55.6 19 0.00063 29.2 5.3 78 108-190 16-97 (334)
159 3ec7_A Putative dehydrogenase; 54.9 31 0.001 28.3 6.6 92 91-190 23-118 (357)
160 1dih_A Dihydrodipicolinate red 54.9 5 0.00017 31.8 1.7 42 151-192 64-105 (273)
161 2rjn_A Response regulator rece 54.9 48 0.0016 22.6 9.9 109 117-228 6-126 (154)
162 2qvg_A Two component response 54.9 45 0.0015 22.3 7.9 107 118-226 7-133 (143)
163 2khz_A C-MYC-responsive protei 54.9 16 0.00053 26.4 4.2 34 155-189 73-109 (165)
164 3ezy_A Dehydrogenase; structur 54.8 30 0.001 28.1 6.5 77 109-190 17-95 (344)
165 2lpm_A Two-component response 54.4 32 0.0011 23.2 5.6 105 119-226 9-120 (123)
166 3ujp_A Mn transporter subunit; 54.3 34 0.0012 27.5 6.5 95 149-245 70-171 (307)
167 3l4e_A Uncharacterized peptida 54.3 34 0.0012 25.6 6.2 41 149-190 69-120 (206)
168 2qr3_A Two-component system re 54.3 45 0.0015 22.2 8.5 108 119-229 4-127 (140)
169 1p2f_A Response regulator; DRR 54.1 39 0.0013 25.0 6.7 107 120-227 4-116 (220)
170 3r0j_A Possible two component 53.9 70 0.0024 24.2 9.2 77 151-227 57-140 (250)
171 3hdv_A Response regulator; PSI 53.7 46 0.0016 22.1 8.6 109 118-229 7-128 (136)
172 1s8n_A Putative antiterminator 53.7 61 0.0021 23.5 9.8 108 119-229 14-132 (205)
173 3kb6_A D-lactate dehydrogenase 53.7 40 0.0014 27.5 6.9 74 119-192 142-232 (334)
174 3hdg_A Uncharacterized protein 53.6 46 0.0016 22.1 7.0 107 119-228 8-125 (137)
175 3evn_A Oxidoreductase, GFO/IDH 53.3 17 0.00057 29.4 4.7 91 92-190 6-98 (329)
176 3moi_A Probable dehydrogenase; 53.3 29 0.00098 28.8 6.2 76 109-190 18-95 (387)
177 1toa_A Tromp-1, protein (perip 53.3 49 0.0017 26.6 7.4 94 151-245 79-178 (313)
178 2r25_B Osmosensing histidine p 52.7 48 0.0016 22.0 7.4 66 159-227 52-126 (133)
179 3c1a_A Putative oxidoreductase 52.6 46 0.0016 26.5 7.2 89 91-190 10-100 (315)
180 3l3e_A DNA topoisomerase 2-bin 52.6 45 0.0015 21.7 6.2 65 117-189 17-82 (107)
181 2ebu_A Replication factor C su 52.2 48 0.0016 22.0 6.0 11 91-101 25-35 (112)
182 3mm4_A Histidine kinase homolo 52.1 67 0.0023 23.5 8.2 66 159-229 119-197 (206)
183 3cg0_A Response regulator rece 51.9 49 0.0017 21.9 9.5 107 118-227 9-127 (140)
184 3gdo_A Uncharacterized oxidore 51.7 36 0.0012 27.9 6.5 88 92-189 6-95 (358)
185 3hh8_A Metal ABC transporter s 51.4 65 0.0022 25.6 7.8 95 149-244 56-163 (294)
186 4e7p_A Response regulator; DNA 51.1 55 0.0019 22.2 9.3 75 151-228 56-140 (150)
187 2b4a_A BH3024; flavodoxin-like 50.9 52 0.0018 21.9 10.6 75 151-229 49-132 (138)
188 2dt5_A AT-rich DNA-binding pro 50.7 25 0.00087 26.4 5.0 96 96-192 54-173 (211)
189 2prs_A High-affinity zinc upta 50.3 35 0.0012 27.0 6.0 94 151-244 40-156 (284)
190 1tlt_A Putative oxidoreductase 50.1 18 0.00061 29.1 4.4 90 92-190 6-96 (319)
191 3cfy_A Putative LUXO repressor 49.8 55 0.0019 21.8 8.4 105 120-227 6-121 (137)
192 3q9s_A DNA-binding response re 49.6 68 0.0023 24.4 7.5 110 118-227 37-153 (249)
193 3hv2_A Response regulator/HD d 49.6 59 0.002 22.2 10.6 107 119-228 15-133 (153)
194 1ys7_A Transcriptional regulat 49.6 77 0.0026 23.5 12.4 106 119-227 8-124 (233)
195 2d8m_A DNA-repair protein XRCC 49.0 60 0.002 22.0 6.7 63 116-189 23-86 (129)
196 3snk_A Response regulator CHEY 48.7 31 0.0011 23.0 4.9 68 160-227 60-132 (135)
197 3f6c_A Positive transcription 48.6 55 0.0019 21.5 8.5 107 119-228 2-120 (134)
198 1k66_A Phytochrome response re 48.6 58 0.002 21.8 7.6 106 119-227 7-137 (149)
199 2pl1_A Transcriptional regulat 48.3 52 0.0018 21.1 8.4 107 120-226 2-116 (121)
200 2w37_A Ornithine carbamoyltran 47.3 1.2E+02 0.0041 25.0 8.7 133 22-168 111-254 (359)
201 3f6p_A Transcriptional regulat 47.3 55 0.0019 21.1 9.0 105 120-227 4-118 (120)
202 3gi1_A LBP, laminin-binding pr 47.1 39 0.0013 26.8 5.8 97 147-245 48-162 (286)
203 3g5o_A Uncharacterized protein 46.7 40 0.0014 22.2 4.9 69 175-255 22-93 (108)
204 2dc1_A L-aspartate dehydrogena 46.4 23 0.00077 27.0 4.2 41 151-191 41-82 (236)
205 1mvo_A PHOP response regulator 46.1 61 0.0021 21.3 10.1 109 120-228 5-121 (136)
206 3a10_A Response regulator; pho 46.0 55 0.0019 20.8 9.4 104 120-226 3-115 (116)
207 2i6u_A Otcase, ornithine carba 45.4 1.2E+02 0.004 24.4 8.9 133 22-168 83-226 (307)
208 3fhl_A Putative oxidoreductase 45.3 40 0.0014 27.6 5.8 88 92-190 6-96 (362)
209 4gmf_A Yersiniabactin biosynth 45.0 34 0.0011 28.4 5.3 89 90-189 6-100 (372)
210 3lkv_A Uncharacterized conserv 44.9 1.1E+02 0.0038 24.0 11.7 150 25-190 61-227 (302)
211 2o1e_A YCDH; alpha-beta protei 44.6 1.1E+02 0.0036 24.6 8.1 93 151-244 62-172 (312)
212 2vt3_A REX, redox-sensing tran 44.1 68 0.0023 24.1 6.5 96 98-193 61-179 (215)
213 1lc0_A Biliverdin reductase A; 43.7 57 0.0019 25.8 6.3 40 151-190 55-96 (294)
214 3gd5_A Otcase, ornithine carba 43.6 67 0.0023 26.0 6.6 131 23-168 93-234 (323)
215 3i23_A Oxidoreductase, GFO/IDH 43.0 57 0.0019 26.5 6.4 77 108-189 17-95 (349)
216 2ixa_A Alpha-N-acetylgalactosa 42.7 1.1E+02 0.0038 25.8 8.4 96 90-190 19-122 (444)
217 1xea_A Oxidoreductase, GFO/IDH 42.1 39 0.0013 27.1 5.2 76 109-189 18-93 (323)
218 2l2q_A PTS system, cellobiose- 41.9 65 0.0022 21.0 5.4 65 146-227 38-104 (109)
219 2ayx_A Sensor kinase protein R 41.9 1.1E+02 0.0039 23.2 8.4 110 118-227 129-246 (254)
220 4fb5_A Probable oxidoreductase 41.7 34 0.0012 28.1 4.9 95 90-189 24-124 (393)
221 1tmy_A CHEY protein, TMY; chem 41.6 67 0.0023 20.5 8.3 107 120-226 4-119 (120)
222 1dc7_A NTRC, nitrogen regulati 41.0 69 0.0024 20.5 5.7 105 120-227 5-120 (124)
223 1w25_A Stalked-cell differenti 40.8 1.5E+02 0.0052 24.8 9.0 109 120-228 3-121 (459)
224 1duv_G Octase-1, ornithine tra 40.8 1.5E+02 0.005 24.2 9.7 133 22-168 88-233 (333)
225 2h1q_A Hypothetical protein; Z 40.5 79 0.0027 24.8 6.5 105 116-224 139-253 (270)
226 3cx3_A Lipoprotein; zinc-bindi 40.5 57 0.0019 25.7 5.8 93 151-244 50-159 (284)
227 2nu8_A Succinyl-COA ligase [AD 39.6 86 0.0029 24.8 6.7 37 151-187 54-92 (288)
228 1l0b_A BRCA1; TANDEM-BRCT, thr 39.3 54 0.0018 24.7 5.4 31 159-189 41-74 (229)
229 2glx_A 1,5-anhydro-D-fructose 38.8 1E+02 0.0034 24.6 7.3 74 110-189 17-92 (332)
230 3oa2_A WBPB; oxidoreductase, s 38.7 87 0.003 25.1 6.7 91 92-190 4-104 (318)
231 2z1d_A Hydrogenase expression/ 37.6 76 0.0026 26.1 5.9 83 107-189 128-226 (372)
232 3qy9_A DHPR, dihydrodipicolina 36.8 13 0.00045 28.8 1.4 40 151-193 47-86 (243)
233 3kip_A 3-dehydroquinase, type 36.4 88 0.003 22.4 5.5 30 159-188 83-114 (167)
234 4g2n_A D-isomer specific 2-hyd 36.3 1.1E+02 0.0039 24.9 7.1 72 118-189 173-262 (345)
235 1s2d_A Purine trans deoxyribos 36.2 26 0.00088 25.3 2.9 39 151-190 74-116 (167)
236 1jg7_A BGT, DNA beta-glucosylt 35.3 1.5E+02 0.005 22.6 15.3 140 92-244 182-332 (351)
237 3f4l_A Putative oxidoreductase 34.9 55 0.0019 26.5 5.0 74 109-189 18-95 (345)
238 1vlv_A Otcase, ornithine carba 34.8 1.8E+02 0.0062 23.5 10.1 133 22-168 102-245 (325)
239 1zh2_A KDP operon transcriptio 34.7 88 0.003 19.9 8.2 107 120-226 3-116 (121)
240 1qo0_D AMIR; binding protein, 34.6 1.2E+02 0.0043 21.6 11.0 68 159-230 52-127 (196)
241 1t35_A Hypothetical protein YV 34.4 32 0.0011 25.4 3.2 38 153-192 91-136 (191)
242 2hqr_A Putative transcriptiona 34.1 61 0.0021 23.9 4.9 105 121-228 3-115 (223)
243 4ep1_A Otcase, ornithine carba 34.1 1.9E+02 0.0065 23.6 8.1 128 24-168 116-256 (340)
244 3klo_A Transcriptional regulat 33.7 87 0.003 23.2 5.8 110 119-228 8-129 (225)
245 4dgs_A Dehydrogenase; structur 33.4 1.7E+02 0.0059 23.8 7.7 74 118-191 171-259 (340)
246 3l5o_A Uncharacterized protein 33.2 97 0.0033 24.3 5.9 102 118-223 141-252 (270)
247 3sqd_A PAX-interacting protein 32.9 39 0.0013 25.5 3.5 61 119-190 17-78 (219)
248 1b0a_A Protein (fold bifunctio 32.6 1.9E+02 0.0063 23.0 7.4 59 109-168 146-211 (288)
249 2a6q_A Antitoxin YEFM; YEFM, a 32.2 80 0.0027 19.5 4.5 53 175-239 18-71 (86)
250 1f8y_A Nucleoside 2-deoxyribos 32.0 32 0.0011 24.5 2.8 36 155-190 74-113 (157)
251 3b2n_A Uncharacterized protein 31.6 1.1E+02 0.0038 20.0 7.6 107 119-228 4-123 (133)
252 3o9z_A Lipopolysaccaride biosy 31.3 2E+02 0.0067 22.8 7.8 76 108-189 18-102 (312)
253 1p6q_A CHEY2; chemotaxis, sign 31.2 1.1E+02 0.0037 19.8 8.5 106 119-227 7-126 (129)
254 3av3_A Phosphoribosylglycinami 31.2 1.6E+02 0.0056 21.9 7.1 38 151-188 97-136 (212)
255 3cu5_A Two component transcrip 31.1 1.2E+02 0.004 20.2 11.4 105 120-227 4-122 (141)
256 1t15_A Breast cancer type 1 su 30.8 64 0.0022 23.9 4.5 64 118-189 4-71 (214)
257 3eul_A Possible nitrate/nitrit 30.5 1.2E+02 0.0043 20.3 8.3 69 159-230 61-137 (152)
258 3d6n_B Aspartate carbamoyltran 30.3 92 0.0031 24.8 5.4 128 22-165 78-211 (291)
259 3pp8_A Glyoxylate/hydroxypyruv 30.2 1.2E+02 0.0039 24.5 6.1 48 118-165 139-199 (315)
260 3kto_A Response regulator rece 30.1 1.2E+02 0.0041 20.0 7.3 107 119-228 7-126 (136)
261 1zq6_A Otcase, ornithine carba 30.1 2.3E+02 0.0079 23.3 10.9 136 21-168 113-274 (359)
262 2qv0_A Protein MRKE; structura 29.7 1.2E+02 0.0042 20.0 8.5 108 118-228 9-127 (143)
263 1eiw_A Hypothetical protein MT 29.6 1.2E+02 0.0042 20.0 5.1 70 155-226 34-108 (111)
264 1dz3_A Stage 0 sporulation pro 29.5 1.2E+02 0.004 19.7 7.3 110 119-228 3-123 (130)
265 2oqr_A Sensory transduction pr 29.4 1.7E+02 0.0057 21.5 7.8 107 119-228 5-121 (230)
266 3jtm_A Formate dehydrogenase, 29.1 1.4E+02 0.0049 24.4 6.5 73 117-189 163-255 (351)
267 3ip3_A Oxidoreductase, putativ 28.9 91 0.0031 25.1 5.4 78 108-190 16-98 (337)
268 1pvv_A Otcase, ornithine carba 28.9 2.3E+02 0.0078 22.8 9.8 132 22-168 90-232 (315)
269 3gvx_A Glycerate dehydrogenase 28.8 80 0.0027 25.1 4.8 71 118-188 122-207 (290)
270 3u80_A 3-dehydroquinate dehydr 28.8 1.5E+02 0.0053 20.8 6.3 31 158-188 69-104 (151)
271 3evt_A Phosphoglycerate dehydr 28.8 1E+02 0.0035 24.9 5.6 72 118-189 137-226 (324)
272 3a06_A 1-deoxy-D-xylulose 5-ph 28.7 1.2E+02 0.004 25.2 5.8 82 109-190 19-116 (376)
273 2z2v_A Hypothetical protein PH 28.6 1.4E+02 0.0049 24.5 6.5 70 119-190 39-108 (365)
274 1b7g_O Protein (glyceraldehyde 28.5 1.6E+02 0.0055 23.9 6.7 82 108-190 15-108 (340)
275 4b4t_W RPN10, 26S proteasome r 28.4 49 0.0017 26.0 3.4 25 208-232 218-242 (268)
276 2vxb_A DNA repair protein RHP9 28.3 62 0.0021 24.8 4.1 20 171-190 78-97 (241)
277 1kgs_A DRRD, DNA binding respo 28.2 1.7E+02 0.006 21.3 9.4 105 120-227 4-119 (225)
278 3ju3_A Probable 2-oxoacid ferr 28.1 72 0.0025 21.2 3.9 65 145-226 50-116 (118)
279 3bio_A Oxidoreductase, GFO/IDH 28.0 36 0.0012 27.2 2.7 85 92-189 10-95 (304)
280 3l41_A BRCT-containing protein 27.8 59 0.002 24.6 3.8 61 118-191 8-68 (220)
281 1xhf_A DYE resistance, aerobic 27.5 1.2E+02 0.0042 19.3 9.8 108 119-226 4-118 (123)
282 3oqb_A Oxidoreductase; structu 26.4 70 0.0024 26.3 4.4 40 151-190 73-114 (383)
283 2a9o_A Response regulator; ess 26.4 1.3E+02 0.0043 19.0 9.5 108 120-227 3-117 (120)
284 1vm6_A DHPR, dihydrodipicolina 26.4 30 0.001 26.4 1.8 39 158-196 52-90 (228)
285 1qv9_A F420-dependent methylen 25.9 25 0.00085 27.0 1.3 98 94-211 8-119 (283)
286 1yio_A Response regulatory pro 25.9 1.8E+02 0.0063 20.8 11.3 110 119-228 5-122 (208)
287 2c2x_A Methylenetetrahydrofola 25.7 2.5E+02 0.0084 22.2 7.5 59 109-168 145-212 (281)
288 3al2_A DNA topoisomerase 2-bin 25.6 1E+02 0.0035 23.5 4.9 31 158-190 44-74 (235)
289 4egs_A Ribose 5-phosphate isom 25.6 97 0.0033 22.5 4.5 39 26-64 105-143 (180)
290 3n8k_A 3-dehydroquinate dehydr 25.4 1.9E+02 0.0066 20.8 5.9 31 158-188 93-125 (172)
291 2nte_A BARD-1, BRCA1-associate 25.1 1.1E+02 0.0039 22.5 5.0 53 130-190 15-67 (210)
292 4e5n_A Thermostable phosphite 25.0 1.4E+02 0.0048 24.1 5.7 72 118-189 145-235 (330)
293 3gg9_A D-3-phosphoglycerate de 24.6 1.3E+02 0.0045 24.6 5.6 72 118-189 160-250 (352)
294 1r0k_A 1-deoxy-D-xylulose 5-ph 24.5 3.1E+02 0.01 22.8 8.8 40 151-190 84-124 (388)
295 3ngx_A Bifunctional protein fo 24.4 2.2E+02 0.0076 22.4 6.5 62 104-167 137-201 (276)
296 4a8p_A Putrescine carbamoyltra 24.3 3E+02 0.01 22.6 8.0 128 22-165 85-226 (355)
297 2yq5_A D-isomer specific 2-hyd 24.2 1.8E+02 0.0061 23.7 6.2 73 118-190 148-236 (343)
298 3ic5_A Putative saccharopine d 24.1 1.4E+02 0.0049 18.9 7.4 89 93-187 7-97 (118)
299 1vl6_A Malate oxidoreductase; 23.9 2.6E+02 0.0088 23.3 7.1 31 151-181 255-285 (388)
300 2cwd_A Low molecular weight ph 23.7 1.4E+02 0.0049 21.0 5.0 40 26-65 76-115 (161)
301 3luf_A Two-component system re 23.7 2.4E+02 0.0083 21.4 10.1 108 117-227 123-244 (259)
302 3keo_A Redox-sensing transcrip 23.5 71 0.0024 24.0 3.4 91 98-189 60-178 (212)
303 3mfq_A TROA, high-affinity zin 23.3 2.7E+02 0.0092 21.8 7.5 90 151-244 47-143 (282)
304 2ef0_A Ornithine carbamoyltran 23.2 2.9E+02 0.0098 22.0 9.6 129 22-168 89-222 (301)
305 1oth_A Protein (ornithine tran 23.2 3E+02 0.01 22.2 10.8 131 22-167 90-231 (321)
306 1pq4_A Periplasmic binding pro 23.1 2.8E+02 0.0094 21.8 7.7 37 208-244 134-172 (291)
307 3hg7_A D-isomer specific 2-hyd 23.1 1.1E+02 0.0038 24.7 4.7 48 118-165 140-200 (324)
308 1dxy_A D-2-hydroxyisocaproate 23.0 2.1E+02 0.007 23.1 6.4 75 118-192 145-235 (333)
309 2yyy_A Glyceraldehyde-3-phosph 23.0 46 0.0016 27.2 2.5 34 156-190 78-113 (343)
310 3v7q_A Probable ribosomal prot 23.0 1.4E+02 0.0049 19.1 4.5 75 103-178 21-98 (101)
311 3do5_A HOM, homoserine dehydro 23.0 2.3E+02 0.0077 22.9 6.6 42 151-192 70-117 (327)
312 1nvm_B Acetaldehyde dehydrogen 22.8 1.3E+02 0.0045 24.1 5.1 91 92-190 5-104 (312)
313 3lwz_A 3-dehydroquinate dehydr 22.8 1.9E+02 0.0064 20.4 5.2 31 158-188 72-104 (153)
314 3oet_A Erythronate-4-phosphate 22.7 1.8E+02 0.006 24.2 5.9 74 117-190 118-210 (381)
315 4etn_A LMPTP, low molecular we 22.6 95 0.0032 22.7 3.9 39 25-63 102-140 (184)
316 2lnd_A De novo designed protei 22.6 42 0.0014 20.5 1.6 47 181-227 49-100 (112)
317 4a8t_A Putrescine carbamoyltra 22.6 3.1E+02 0.011 22.3 8.9 129 22-166 107-249 (339)
318 4hy3_A Phosphoglycerate oxidor 22.5 2.5E+02 0.0087 23.0 6.9 72 118-189 176-265 (365)
319 1oi7_A Succinyl-COA synthetase 22.5 1.6E+02 0.0054 23.3 5.5 27 159-185 64-90 (288)
320 1ny5_A Transcriptional regulat 22.4 3.3E+02 0.011 22.4 8.6 110 120-229 2-119 (387)
321 3btv_A Galactose/lactose metab 22.3 75 0.0026 26.9 3.8 97 91-190 20-126 (438)
322 4amu_A Ornithine carbamoyltran 22.3 3.3E+02 0.011 22.4 9.6 133 23-167 116-259 (365)
323 3c97_A Signal transduction his 22.3 1.7E+02 0.0059 19.2 12.3 107 119-228 11-130 (140)
324 3glr_A NAD-dependent deacetyla 22.2 1.5E+02 0.0051 23.5 5.2 98 141-241 176-278 (285)
325 3k5p_A D-3-phosphoglycerate de 22.2 2.3E+02 0.0078 23.9 6.6 75 118-192 156-246 (416)
326 1wwk_A Phosphoglycerate dehydr 22.2 2.4E+02 0.0082 22.4 6.6 72 118-189 142-231 (307)
327 3g8r_A Probable spore coat pol 22.1 3.3E+02 0.011 22.3 7.3 59 132-191 82-143 (350)
328 1p8a_A Protein tyrosine phosph 22.0 1.8E+02 0.0061 20.1 5.2 36 28-63 74-110 (146)
329 2nvw_A Galactose/lactose metab 21.7 85 0.0029 27.0 4.0 97 91-190 39-145 (479)
330 2etx_A Mediator of DNA damage 21.5 91 0.0031 23.1 3.8 61 117-190 11-71 (209)
331 2p2s_A Putative oxidoreductase 21.4 72 0.0024 25.7 3.4 40 151-190 56-97 (336)
332 3on1_A BH2414 protein; structu 21.4 1.5E+02 0.005 19.0 4.3 75 103-178 20-97 (101)
333 1sc6_A PGDH, D-3-phosphoglycer 21.2 2.5E+02 0.0085 23.4 6.7 76 117-192 144-235 (404)
334 1vli_A Spore coat polysacchari 21.2 2.4E+02 0.0082 23.4 6.4 62 130-192 103-167 (385)
335 1weh_A Conserved hypothetical 21.1 35 0.0012 24.7 1.3 66 155-224 93-170 (171)
336 3d4o_A Dipicolinate synthase s 21.0 3E+02 0.01 21.5 7.4 38 151-188 205-242 (293)
337 3nbm_A PTS system, lactose-spe 20.9 1.8E+02 0.0063 19.0 4.8 48 142-191 37-86 (108)
338 2ohw_A YUEI protein; structura 20.9 85 0.0029 21.6 3.1 50 95-144 41-92 (133)
339 3fx7_A Putative uncharacterize 20.8 1.5E+02 0.0052 18.9 4.0 55 209-266 5-60 (94)
340 3mfq_A TROA, high-affinity zin 20.5 1.3E+02 0.0044 23.7 4.6 55 37-98 9-63 (282)
341 2axq_A Saccharopine dehydrogen 20.2 3.6E+02 0.012 23.0 7.6 92 93-189 25-118 (467)
342 2g76_A 3-PGDH, D-3-phosphoglyc 20.2 2.9E+02 0.0098 22.4 6.7 72 118-189 165-254 (335)
343 2prs_A High-affinity zinc upta 20.1 2.4E+02 0.0083 22.0 6.2 55 37-98 2-56 (284)
344 2pi1_A D-lactate dehydrogenase 20.0 2E+02 0.0068 23.3 5.7 77 120-196 143-236 (334)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=1.6e-36 Score=260.15 Aligned_cols=241 Identities=24% Similarity=0.370 Sum_probs=209.7
Q ss_pred ccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccch-HHHHHhhcCCCCCceEEEeec
Q 022615 21 KPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS-EMRWRLSNGEPDKPLIVHVGR 99 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~G~ 99 (294)
...+.+.+.+++.+|.++++|+..++.+.+.++. ..++.++|||+|.+.+.+..... ....+.....++.++++|+|+
T Consensus 128 ~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 206 (394)
T 3okp_A 128 PGSRQSLRKIGTEVDVLTYISQYTLRRFKSAFGS-HPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSR 206 (394)
T ss_dssp HHHHHHHHHHHHHCSEEEESCHHHHHHHHHHHCS-SSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTCCEEEEESC
T ss_pred chhhHHHHHHHHhCCEEEEcCHHHHHHHHHhcCC-CCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCceEEEEEec
Confidence 3456788999999999999999999999998764 57999999999999887733322 222222223445689999999
Q ss_pred ccccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcC--CCeEEEecccchhHHHHHhcCCEEEeecCC----
Q 022615 100 LGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSES---- 169 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~--~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~---- 169 (294)
+.+.||++.++++++.+ ++++|+|+|.|++.+.+++++.. .+|.+.|+++++++.++|+.||++++||..
T Consensus 207 ~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~ 286 (394)
T 3okp_A 207 LVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGG 286 (394)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGG
T ss_pred cccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCcccccc
Confidence 99999999999999766 78999999999998888887743 379999999999999999999999999998
Q ss_pred ---CCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-h
Q 022615 170 ---ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-K 245 (294)
Q Consensus 170 ---e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~ 245 (294)
|++|++++|||++|+|||+++.++..+++ .++ +|++++++|+++++++|.++++|++.++++++++++.+. +
T Consensus 287 ~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i---~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 362 (394)
T 3okp_A 287 LDVEGLGIVYLEAQACGVPVIAGTSGGAPETV---TPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAE 362 (394)
T ss_dssp TBCCSSCHHHHHHHHTTCCEEECSSTTGGGGC---CTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcHHHHHHHcCCCEEEeCCCChHHHH---hcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 778 999999999999999999999999999999999999985 5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 022615 246 YDWRAATRTIRNEQYNAAIWFW 267 (294)
Q Consensus 246 ~s~~~~~~~~~~~l~~~~~~~~ 267 (294)
|+|+.+++++. .+|+++....
T Consensus 363 ~s~~~~~~~~~-~~~~~~~r~~ 383 (394)
T 3okp_A 363 WSWEIMGERLT-NILQSEPRKL 383 (394)
T ss_dssp TBHHHHHHHHH-HHHHSCCC--
T ss_pred CCHHHHHHHHH-HHHHHhccCc
Confidence 99999999999 7998876443
No 2
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.6e-36 Score=263.89 Aligned_cols=238 Identities=26% Similarity=0.380 Sum_probs=205.1
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccch--HHHHHhhcCCCCCceEEEeeccc
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS--EMRWRLSNGEPDKPLIVHVGRLG 101 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~G~~~ 101 (294)
..+++.+++.+|.++++|+..++.+.+.++.+.+++.++|||+|.+.+.+..... ..+.+.. ..++.++++++|++.
T Consensus 175 ~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~-~~~~~~~i~~~G~~~ 253 (438)
T 3c48_A 175 RICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELG-IPLHTKVVAFVGRLQ 253 (438)
T ss_dssp HHHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTT-CCSSSEEEEEESCBS
T ss_pred HHHHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEecCCccccccCCcccchhhhhHHhcC-CCCCCcEEEEEeeec
Confidence 4567889999999999999999999987777778999999999998887653221 1233322 235678899999999
Q ss_pred ccccHHHHHHHHHhC----C--CcEEEEEcC----CccHHHHHhhhcC----CCeEEEecccchhHHHHHhcCCEEEeec
Q 022615 102 VEKSLDFLKRVMDRL----P--EARIAFIGD----GPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 102 ~~k~~~~l~~~~~~~----~--~~~l~i~G~----~~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
+.||++.+++++..+ | +++|+|+|. |+..+.+++++.+ .+|.+.|+++++++.++|+.||++++||
T Consensus 254 ~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps 333 (438)
T 3c48_A 254 PFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPS 333 (438)
T ss_dssp GGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECC
T ss_pred ccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECc
Confidence 999999999999765 3 799999998 7777777776653 4699999999999999999999999999
Q ss_pred CCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCC
Q 022615 168 ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 247 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s 247 (294)
..|++|++++|||+||+|||+++.++..+++ .++.+|+++++.|+++++++|.++++|++.+.++++++++.+++|+
T Consensus 334 ~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i---~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~s 410 (438)
T 3c48_A 334 FNESFGLVAMEAQASGTPVIAARVGGLPIAV---AEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFS 410 (438)
T ss_dssp SCCSSCHHHHHHHHTTCCEEEESCTTHHHHS---CBTTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCchHHHHHHHcCCCEEecCCCChhHHh---hCCCcEEECCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999 7888999999999999999999999999999999999999997799
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022615 248 WRAATRTIRNEQYNAAIWF 266 (294)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~ 266 (294)
|+.+++++. .+|++++..
T Consensus 411 ~~~~~~~~~-~~~~~~~~~ 428 (438)
T 3c48_A 411 WAATAAQLS-SLYNDAIAN 428 (438)
T ss_dssp HHHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHhhh
Confidence 999999999 899998764
No 3
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=1.8e-35 Score=253.83 Aligned_cols=237 Identities=23% Similarity=0.417 Sum_probs=204.7
Q ss_pred cHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccc
Q 022615 22 PMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG 101 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 101 (294)
.++.+++.+++.+|.++++|+.+++.+.+.++. .+++.++|||+|.+.+.+.. ....+.+.. ..++.++++|+|++.
T Consensus 145 ~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~-~~~~~vi~ngv~~~~~~~~~-~~~~~~~~~-~~~~~~~i~~~G~~~ 221 (394)
T 2jjm_A 145 SLNNLIRFGIEQSDVVTAVSHSLINETHELVKP-NKDIQTVYNFIDERVYFKRD-MTQLKKEYG-ISESEKILIHISNFR 221 (394)
T ss_dssp TTHHHHHHHHHHSSEEEESCHHHHHHHHHHTCC-SSCEEECCCCCCTTTCCCCC-CHHHHHHTT-CC---CEEEEECCCC
T ss_pred HHHHHHHHHHhhCCEEEECCHHHHHHHHHhhCC-cccEEEecCCccHHhcCCcc-hHHHHHHcC-CCCCCeEEEEeeccc
Confidence 345788899999999999999999999988765 57999999999998887653 223333322 225678999999999
Q ss_pred ccccHHHHHHHHHhC---CCcEEEEEcCCccHHHHHhhhcCC----CeEEEecccchhHHHHHhcCCEEEeecCCCCcch
Q 022615 102 VEKSLDFLKRVMDRL---PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGL 174 (294)
Q Consensus 102 ~~k~~~~l~~~~~~~---~~~~l~i~G~~~~~~~~~~~~~~~----~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~ 174 (294)
+.||++.+++++..+ ++++|+|+|.|+..+.+++++++. +|.+.|+ .+++.++|+.||++++||..|++|+
T Consensus 222 ~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps~~e~~~~ 299 (394)
T 2jjm_A 222 KVKRVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGK--QDNVAELLAMSDLMLLLSEKESFGL 299 (394)
T ss_dssp GGGTHHHHHHHHHHHHHSSCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBS--CSCTHHHHHTCSEEEECCSCCSCCH
T ss_pred cccCHHHHHHHHHHHHhhCCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCc--hhhHHHHHHhCCEEEeccccCCCch
Confidence 999999999999876 468999999999888888887754 5899996 4899999999999999999999999
Q ss_pred HHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHH
Q 022615 175 VVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATR 253 (294)
Q Consensus 175 ~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~ 253 (294)
+++|||+||+|||+++.++..+++ .++.+|+++++.|+++++++|..+++|++.++++++++++.+ ++|+|+.+++
T Consensus 300 ~~~EAma~G~PvI~~~~~~~~e~v---~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 376 (394)
T 2jjm_A 300 VLLEAMACGVPCIGTRVGGIPEVI---QHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVS 376 (394)
T ss_dssp HHHHHHHTTCCEEEECCTTSTTTC---CBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHhcCCCEEEecCCChHHHh---hcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999 788999999999999999999999999999999999999998 7799999999
Q ss_pred HHHHHHHHHHHHHH
Q 022615 254 TIRNEQYNAAIWFW 267 (294)
Q Consensus 254 ~~~~~l~~~~~~~~ 267 (294)
++. .+|++++...
T Consensus 377 ~~~-~~~~~~~~~~ 389 (394)
T 2jjm_A 377 QYE-TIYYDVLRDD 389 (394)
T ss_dssp HHH-HHHHHTC---
T ss_pred HHH-HHHHHHHhhh
Confidence 999 8999987654
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=4.9e-36 Score=260.61 Aligned_cols=234 Identities=22% Similarity=0.283 Sum_probs=204.1
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCc-------cchHHHHHhhcCCCCCceEEEe
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRF-------RSSEMRWRLSNGEPDKPLIVHV 97 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~ 97 (294)
.+++.+++.+|.++++|+.+++.....++.+..++.+||||+|.+.+.+.. .....+.+.+. .++ ++|+|+
T Consensus 180 ~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~~ 257 (439)
T 3fro_A 180 DPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGM-DEG-VTFMFI 257 (439)
T ss_dssp CHHHHHHHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTC-CSC-EEEEEE
T ss_pred eHhhhhhhhccEEEecCHHHHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCC-CCC-cEEEEE
Confidence 688999999999999999999987666666778999999999999887652 11222233322 334 899999
Q ss_pred eccc-ccccHHHHHHHHHhC------CCcEEEEEcCCccH--HHHHhhhcCC--CeEEEecccchhHHHHHhcCCEEEee
Q 022615 98 GRLG-VEKSLDFLKRVMDRL------PEARIAFIGDGPYR--EELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMP 166 (294)
Q Consensus 98 G~~~-~~k~~~~l~~~~~~~------~~~~l~i~G~~~~~--~~~~~~~~~~--~v~~~g~~~~~~~~~~~~~ad~~l~p 166 (294)
|++. +.||++.++++++.+ ++++|+|+|.|+.. +.++++.... .+.+.|+++.+++.++|+.||++++|
T Consensus 258 G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~p 337 (439)
T 3fro_A 258 GRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIP 337 (439)
T ss_dssp CCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEEC
T ss_pred cccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCEEEeC
Confidence 9999 999999999999877 78999999999866 7777776543 36788999999999999999999999
Q ss_pred cCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHh
Q 022615 167 SESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEK 245 (294)
Q Consensus 167 s~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~ 245 (294)
|..|++|++++|||+||+|||+++.++..+++ .++ +|++++++|+++++++|.++++ +++.++++++++++.+++
T Consensus 338 s~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~---~~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~ 413 (439)
T 3fro_A 338 SYFEPFGLVALEAMCLGAIPIASAVGGLRDII---TNE-TGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMS 413 (439)
T ss_dssp BSCCSSCHHHHHHHHTTCEEEEESSTHHHHHC---CTT-TCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHT
T ss_pred CCCCCccHHHHHHHHCCCCeEEcCCCCcceeE---EcC-ceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999 666 9999999999999999999999 999999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 022615 246 YDWRAATRTIRNEQYNAAIW 265 (294)
Q Consensus 246 ~s~~~~~~~~~~~l~~~~~~ 265 (294)
|+|+.+++++. .+|+++++
T Consensus 414 ~s~~~~~~~~~-~~~~~~~~ 432 (439)
T 3fro_A 414 FSWEKSAERYV-KAYTGSID 432 (439)
T ss_dssp SCHHHHHHHHH-HHHHTCSC
T ss_pred CcHHHHHHHHH-HHHHHHHH
Confidence 99999999999 89988753
No 5
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=3.9e-35 Score=259.27 Aligned_cols=242 Identities=21% Similarity=0.279 Sum_probs=205.1
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHh--cc-C----CcCceEEeeccccCCCCCCCccc---hHHHHHhhc----CCCC
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAA--RV-T----AANKIRIWKKGVDSESFHPRFRS---SEMRWRLSN----GEPD 90 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~--~~-~----~~~~i~~i~~gvd~~~~~~~~~~---~~~~~~~~~----~~~~ 90 (294)
.+++.+++.+|.++++|+.+++.+.+. ++ . +.+++.+||||+|.+.+.+.... ...+.+.+. ..++
T Consensus 182 ~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 261 (499)
T 2r60_A 182 IAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERME 261 (499)
T ss_dssp HHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTT
T ss_pred HHHHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChhhcCccchhhhHHHHHHHhcccccccCCC
Confidence 467889999999999999999999887 66 5 67899999999999988765331 223333220 2346
Q ss_pred CceEEEeecccccccHHHHHHHHHhCC-----CcEEEEEcC--Cc------c-------HHHHHhhhcC----CCeEEEe
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLP-----EARIAFIGD--GP------Y-------REELEKMFTG----MPAVFTG 146 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~-----~~~l~i~G~--~~------~-------~~~~~~~~~~----~~v~~~g 146 (294)
.++|+|+|++.+.||++.+++++..+. .++++|+|. |+ . .+.+++++++ .+|.++|
T Consensus 262 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G 341 (499)
T 2r60_A 262 LPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP 341 (499)
T ss_dssp SCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE
T ss_pred CcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECC
Confidence 778999999999999999999999883 258999998 33 1 5666666653 3699999
Q ss_pred cccchhHHHHHhcC----CEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHH
Q 022615 147 MLLGEELSQAYASG----DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 222 (294)
Q Consensus 147 ~~~~~~~~~~~~~a----d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i 222 (294)
+++++++..+|+.| |++++||..|++|++++|||+||+|||+++.++..|++ .++.+|+++++.|+++++++|
T Consensus 342 ~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v---~~~~~g~l~~~~d~~~la~~i 418 (499)
T 2r60_A 342 LNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEIL---DGGKYGVLVDPEDPEDIARGL 418 (499)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHT---GGGTSSEEECTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHh---cCCceEEEeCCCCHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999 778899999999999999999
Q ss_pred HHHhhChHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHh
Q 022615 223 EPLLYNQELRETMGQAARQEMEK-YDWRAATRTIRNEQYNAAIWFWRKK 270 (294)
Q Consensus 223 ~~ll~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~l~~~~~~~~~~~ 270 (294)
..+++|++.+.++++++++.+.+ |+|+.+++++. .+|++++...+..
T Consensus 419 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~y~~~~~~~~~~ 466 (499)
T 2r60_A 419 LKAFESEETWSAYQEKGKQRVEERYTWQETARGYL-EVIQEIADRKDEE 466 (499)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHH-HHHHHHHHC----
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhhhhh
Confidence 99999999999999999999865 99999999999 8999998765444
No 6
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1.2e-35 Score=256.52 Aligned_cols=228 Identities=19% Similarity=0.251 Sum_probs=195.0
Q ss_pred HHHHHHhCC--eEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCC--CCceEEEeecccc
Q 022615 27 IKFLHRAAD--LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP--DKPLIVHVGRLGV 102 (294)
Q Consensus 27 ~~~~~~~ad--~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~G~~~~ 102 (294)
.+++++++| .++++|+.+++.+.+ ++. +.++.++|||+|.+.+. ..+.+.. ..+ +.++|+++|++.+
T Consensus 125 ~~~~~~~~~~~~ii~~S~~~~~~~~~-~~~-~~~~~vi~ngvd~~~~~------~~~~~~~-~~~~~~~~~il~vGr~~~ 195 (413)
T 3oy2_A 125 LWWIFSHPKVVGVMAMSKCWISDICN-YGC-KVPINIVSHFVDTKTIY------DARKLVG-LSEYNDDVLFLNMNRNTA 195 (413)
T ss_dssp GGGGGGCTTEEEEEESSTHHHHHHHH-TTC-CSCEEECCCCCCCCCCT------THHHHTT-CGGGTTSEEEECCSCSSG
T ss_pred HHHHHhccCCceEEEcCHHHHHHHHH-cCC-CCceEEeCCCCCHHHHH------HHHHhcC-CCcccCceEEEEcCCCch
Confidence 477888988 999999999999999 444 57999999999998771 1122222 122 5789999999999
Q ss_pred cccHHHHHHHHHhC----CCcEEEEEcCCccH------HHHHhhhcCC----C-------eEEEecccchhHHHHHhcCC
Q 022615 103 EKSLDFLKRVMDRL----PEARIAFIGDGPYR------EELEKMFTGM----P-------AVFTGMLLGEELSQAYASGD 161 (294)
Q Consensus 103 ~k~~~~l~~~~~~~----~~~~l~i~G~~~~~------~~~~~~~~~~----~-------v~~~g~~~~~~~~~~~~~ad 161 (294)
.||++.+++++..+ ++++|+|+|.|+.. +.+++++++. + +.+.|+++++++.++|+.||
T Consensus 196 ~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~ad 275 (413)
T 3oy2_A 196 RKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACD 275 (413)
T ss_dssp GGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCS
T ss_pred hcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCC
Confidence 99999999998876 89999999988654 6666654432 2 77889999999999999999
Q ss_pred EEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcc---------------ee--ecCCCCHHHHHHHHHH
Q 022615 162 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKI---------------GY--LFNPGDLDDCLSKLEP 224 (294)
Q Consensus 162 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~---------------g~--~~~~~d~~~l~~~i~~ 224 (294)
++++||..|++|++++|||+||+|||+++.++..|++ .++.+ |+ ++++.|+++++++| +
T Consensus 276 v~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v---~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~ 351 (413)
T 3oy2_A 276 VIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYF---SGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-T 351 (413)
T ss_dssp EEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHS---CTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-H
T ss_pred EEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHH---ccCcccccccccccccccccCcceeeCCCCHHHHHHHH-H
Confidence 9999999999999999999999999999999999999 66666 88 99999999999999 9
Q ss_pred HhhChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHH
Q 022615 225 LLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFWR 268 (294)
Q Consensus 225 ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~~~~~~~~~ 268 (294)
+++|++.++++++++++.+ ++|+|+.+++++. .+|++++++..
T Consensus 352 l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~~~~~~~~~~ 395 (413)
T 3oy2_A 352 FFKDEKNRKEYGKRVQDFVKTKPTWDDISSDII-DFFNSLLRVES 395 (413)
T ss_dssp HTTSHHHHHHHHHHHHHHHTTSCCHHHHHHHHH-HHHHHHTC---
T ss_pred HhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhcC
Confidence 9999999999999999998 5799999999999 89999986543
No 7
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=3.8e-35 Score=258.51 Aligned_cols=236 Identities=19% Similarity=0.247 Sum_probs=199.0
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHh-cc--------CCcCceEEeeccccCCCCCCCcc------------------c
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAA-RV--------TAANKIRIWKKGVDSESFHPRFR------------------S 77 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~--------~~~~~i~~i~~gvd~~~~~~~~~------------------~ 77 (294)
.+++.+++.+|.++++|+..++.+.+. ++ .+..++.+||||+|.+.|.+... .
T Consensus 198 ~~~~~~~~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (485)
T 1rzu_A 198 SFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNK 277 (485)
T ss_dssp EHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHH
T ss_pred cHHHHHHhhcCEEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhH
Confidence 477889999999999999999998764 33 35679999999999988876532 1
Q ss_pred hHHHHHhhcCCCCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCCc--cHHHHHhhhcC--CCeE-EEecccc
Q 022615 78 SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTG--MPAV-FTGMLLG 150 (294)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~~--~~~~~~~~~~~--~~v~-~~g~~~~ 150 (294)
...+.+.+...++.++|+|+|++.+.||++.+++++..+ ++++|+|+|.|+ +.+.+++++.. .+|. +.|+ +.
T Consensus 278 ~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~ 356 (485)
T 1rzu_A 278 KAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY-NE 356 (485)
T ss_dssp HHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESC-CH
T ss_pred HHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCC-CH
Confidence 233333433332366999999999999999999999877 689999999986 45667766654 4687 6787 77
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCC---------cceeecCCCCHHHHHHH
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG---------KIGYLFNPGDLDDCLSK 221 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~---------~~g~~~~~~d~~~l~~~ 221 (294)
+++..+|+.||++++||..|++|++++|||+||+|||+++.++..|++ .++ .+|+++++.|+++++++
T Consensus 357 ~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v---~~~~~~~~~~~~~~G~l~~~~d~~~la~~ 433 (485)
T 1rzu_A 357 PLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTV---IDANHAALASKAATGVQFSPVTLDGLKQA 433 (485)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHC---CBCCHHHHHTTCCCBEEESSCSHHHHHHH
T ss_pred HHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhhee---cccccccccccCCcceEeCCCCHHHHHHH
Confidence 788999999999999999999999999999999999999999999999 777 89999999999999999
Q ss_pred HHHHh---hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q 022615 222 LEPLL---YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFW 267 (294)
Q Consensus 222 i~~ll---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~~ 267 (294)
|..++ +|++.++++++++++ ++|+|+.+++++. .+|++++...
T Consensus 434 i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~-~~y~~~~~~~ 479 (485)
T 1rzu_A 434 IRRTVRYYHDPKLWTQMQKLGMK--SDVSWEKSAGLYA-ALYSQLISKG 479 (485)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHT--CCCBHHHHHHHHH-HHHHHHTC--
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH--HhCChHHHHHHHH-HHHHHhhCCC
Confidence 99999 799999999988865 6799999999999 8999987554
No 8
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=2.4e-34 Score=253.35 Aligned_cols=237 Identities=19% Similarity=0.264 Sum_probs=197.3
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHh-ccC--------Cc--CceEEeeccccCCCCCCCcc-----------------
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAA-RVT--------AA--NKIRIWKKGVDSESFHPRFR----------------- 76 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~~--------~~--~~i~~i~~gvd~~~~~~~~~----------------- 76 (294)
.+++.+++.+|.++++|+.+++.+.+. ++. +. .++.+||||+|.+.+.+...
T Consensus 196 ~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (485)
T 2qzs_A 196 SFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAE 275 (485)
T ss_dssp EHHHHHHHHCSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHH
T ss_pred cHHHHHHHhcCeEEecCHHHHHHHhccccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHH
Confidence 578889999999999999999998764 332 22 68999999999998876532
Q ss_pred -chHHHHHhhcCC-CCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCCc--cHHHHHhhhcC--CCeE-EEec
Q 022615 77 -SSEMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTG--MPAV-FTGM 147 (294)
Q Consensus 77 -~~~~~~~~~~~~-~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~~--~~~~~~~~~~~--~~v~-~~g~ 147 (294)
....+.+..... ++.++|+++|++.+.||++.+++++..+ ++++|+|+|.|+ ..+.+++++.+ .+|. +.|+
T Consensus 276 ~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~ 355 (485)
T 2qzs_A 276 NKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGY 355 (485)
T ss_dssp HHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESC
T ss_pred hHHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCC
Confidence 123333333222 2668999999999999999999999887 589999999885 45677776654 4686 7787
Q ss_pred ccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCC---------cceeecCCCCHHHH
Q 022615 148 LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG---------KIGYLFNPGDLDDC 218 (294)
Q Consensus 148 ~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~---------~~g~~~~~~d~~~l 218 (294)
+.+++..+|+.||++++||..|++|++++|||+||+|||+++.++..|++ .++ .+|++++++|++++
T Consensus 356 -~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v---~~~~~~~~~~~~~~G~l~~~~d~~~l 431 (485)
T 2qzs_A 356 -HEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTV---SDCSLENLADGVASGFVFEDSNAWSL 431 (485)
T ss_dssp -CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHC---CBCCHHHHHTTCCCBEEECSSSHHHH
T ss_pred -CHHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCcccee---ccCccccccccccceEEECCCCHHHH
Confidence 77788999999999999999999999999999999999999999999999 777 89999999999999
Q ss_pred HHHHHHHh---hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Q 022615 219 LSKLEPLL---YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWR 268 (294)
Q Consensus 219 ~~~i~~ll---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~~~ 268 (294)
+++|.+++ .|++.+.++++++++ ++|+|+.+++++. .+|+++.....
T Consensus 432 a~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~-~ly~~~~~~~~ 481 (485)
T 2qzs_A 432 LRAIRRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYR-ELYYRLKLEHH 481 (485)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHH-HHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCHHHHHHHHH-HHHHHhhhhhc
Confidence 99999999 799999999988864 6799999999999 89998865543
No 9
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=7.2e-35 Score=250.91 Aligned_cols=225 Identities=23% Similarity=0.308 Sum_probs=198.5
Q ss_pred HHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecc-cccccH
Q 022615 28 KFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSL 106 (294)
Q Consensus 28 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~-~~~k~~ 106 (294)
+.+++.+|.++++|+..++.+.+.++ ..++ ++|||+|.+.+.+..... ...++.++++|+|++ .+.||+
T Consensus 155 ~~~~~~~d~ii~~s~~~~~~~~~~~~--~~~~-vi~~~v~~~~~~~~~~~~-------~~~~~~~~i~~~G~~~~~~Kg~ 224 (406)
T 2gek_A 155 RPYHEKIIGRIAVSDLARRWQMEALG--SDAV-EIPNGVDVASFADAPLLD-------GYPREGRTVLFLGRYDEPRKGM 224 (406)
T ss_dssp HHHHTTCSEEEESSHHHHHHHHHHHS--SCEE-ECCCCBCHHHHHTCCCCT-------TCSCSSCEEEEESCTTSGGGCH
T ss_pred HHHHhhCCEEEECCHHHHHHHHHhcC--CCcE-EecCCCChhhcCCCchhh-------hccCCCeEEEEEeeeCccccCH
Confidence 37889999999999999999988664 3578 999999987665543211 012245799999999 999999
Q ss_pred HHHHHHHHhC----CCcEEEEEcCCccHHHHHhhhcC--CCeEEEecccchhHHHHHhcCCEEEeecC-CCCcchHHHHH
Q 022615 107 DFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEA 179 (294)
Q Consensus 107 ~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~~~--~~v~~~g~~~~~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea 179 (294)
+.+++++..+ ++++|+|+|.++. +.+++++++ .+|.+.|+++++++.++|+.||++|+||. .|++|++++||
T Consensus 225 ~~li~a~~~l~~~~~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea 303 (406)
T 2gek_A 225 AVLLAALPKLVARFPDVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEA 303 (406)
T ss_dssp HHHHHHHHHHHTTSTTCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHH
Confidence 9999999876 7899999999988 777777664 47999999999999999999999999986 99999999999
Q ss_pred HhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 022615 180 MSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQ 259 (294)
Q Consensus 180 ~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l 259 (294)
|+||+|||+++.++..+++ .++.+|+++++.|+++++++|.+++++++.+.++++++++.+++|+|+.+++++. .+
T Consensus 304 ~a~G~PvI~~~~~~~~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~ 379 (406)
T 2gek_A 304 MAAGTAVVASDLDAFRRVL---ADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIM-RV 379 (406)
T ss_dssp HHHTCEEEECCCHHHHHHH---TTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGGBHHHHHHHHH-HH
T ss_pred HHcCCCEEEecCCcHHHHh---cCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HH
Confidence 9999999999999999999 7889999999999999999999999999999999999999988999999999999 89
Q ss_pred HHHHHHHH
Q 022615 260 YNAAIWFW 267 (294)
Q Consensus 260 ~~~~~~~~ 267 (294)
|+++++..
T Consensus 380 ~~~~~~~~ 387 (406)
T 2gek_A 380 YETVSGAG 387 (406)
T ss_dssp HHHHCCTT
T ss_pred HHHHHhhc
Confidence 99987543
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1e-33 Score=241.13 Aligned_cols=231 Identities=17% Similarity=0.210 Sum_probs=196.3
Q ss_pred HHHHHHHH--hCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccc---hHHHHHhhcCCCCCceEEEeec
Q 022615 25 LVIKFLHR--AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS---SEMRWRLSNGEPDKPLIVHVGR 99 (294)
Q Consensus 25 ~~~~~~~~--~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~G~ 99 (294)
.+++.++. .+|.++++|+..++.+.+.++.+..++.++|||+|.+.+.+.... ...+.+.. ..++.++++|+|+
T Consensus 126 ~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~G~ 204 (374)
T 2iw1_A 126 AFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNG-IKEQQNLLLQVGS 204 (374)
T ss_dssp HHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTT-CCTTCEEEEEECS
T ss_pred HHHHHHhhccCCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhC-CCCCCeEEEEecc
Confidence 45555554 699999999999999999888878899999999999877654321 12222222 2356789999999
Q ss_pred ccccccHHHHHHHHHhC-----CCcEEEEEcCCccHHHHHhhhc----CCCeEEEecccchhHHHHHhcCCEEEeecCCC
Q 022615 100 LGVEKSLDFLKRVMDRL-----PEARIAFIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESE 170 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~-----~~~~l~i~G~~~~~~~~~~~~~----~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e 170 (294)
+.+.||++.+++++..+ ++++|+++|.|+. +.++++++ ..+|.++|+. +++.++|+.||++++||..|
T Consensus 205 ~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~ps~~e 281 (374)
T 2iw1_A 205 DFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP-RKFEALAEKLGVRSNVHFFSGR--NDVSELMAAADLLLHPAYQE 281 (374)
T ss_dssp CTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC-HHHHHHHHHHTCGGGEEEESCC--SCHHHHHHHCSEEEECCSCC
T ss_pred chhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCH-HHHHHHHHHcCCCCcEEECCCc--ccHHHHHHhcCEEEeccccC
Confidence 99999999999999887 3689999999874 45555544 2479999974 89999999999999999999
Q ss_pred CcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecC-CCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHH
Q 022615 171 TLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFN-PGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWR 249 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~-~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~ 249 (294)
++|++++|||+||+|||+++.++..+++ .++.+|++++ +.|+++++++|.++++|++.++++++++++.+++++|+
T Consensus 282 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i---~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 358 (374)
T 2iw1_A 282 AAGIVLLEAITAGLPVLTTAVCGYAHYI---ADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLY 358 (374)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHHH---HHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCS
T ss_pred CcccHHHHHHHCCCCEEEecCCCchhhh---ccCCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999 7788999997 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 022615 250 AATRTIRNEQYNAA 263 (294)
Q Consensus 250 ~~~~~~~~~l~~~~ 263 (294)
..++++. .+++..
T Consensus 359 ~~~~~~~-~~l~~~ 371 (374)
T 2iw1_A 359 SLPEKAA-DIITGG 371 (374)
T ss_dssp CHHHHHH-HHHHCC
T ss_pred HHHHHHH-HHHHHh
Confidence 9999998 666654
No 11
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=2.8e-33 Score=255.43 Aligned_cols=233 Identities=20% Similarity=0.294 Sum_probs=192.5
Q ss_pred HHHHHHhCCeEEecchhhHHHHHHh---cc------------------CCcCceEEeeccccCCCCCCCccchH------
Q 022615 27 IKFLHRAADLTLVPSVAIGKDLEAA---RV------------------TAANKIRIWKKGVDSESFHPRFRSSE------ 79 (294)
Q Consensus 27 ~~~~~~~ad~ii~~s~~~~~~~~~~---~~------------------~~~~~i~~i~~gvd~~~~~~~~~~~~------ 79 (294)
++.+++.||.||++|+..++.+... +. ....++.+||||+|.+.|.|......
T Consensus 468 E~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~ 547 (816)
T 3s28_A 468 DIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFH 547 (816)
T ss_dssp HHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGH
T ss_pred HHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhcc
Confidence 6679999999999999988742211 11 11238999999999999877543221
Q ss_pred ------------HHHHhh-cCCCCCceEEEeecccccccHHHHHHHHHhC----CCcEEEEEcCCc-----------cHH
Q 022615 80 ------------MRWRLS-NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGP-----------YRE 131 (294)
Q Consensus 80 ------------~~~~~~-~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~-----------~~~ 131 (294)
.+...+ ...++.++|+|+|++.+.||++.+++++..+ ++++|+|+|.|+ ..+
T Consensus 548 ~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~ 627 (816)
T 3s28_A 548 SEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMK 627 (816)
T ss_dssp HHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHH
T ss_pred ccccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHH
Confidence 000000 1145678999999999999999999999888 469999999988 455
Q ss_pred HHHhhhcC----CCeEEEec----ccchhHHHHHh-cCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCC
Q 022615 132 ELEKMFTG----MPAVFTGM----LLGEELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ 202 (294)
Q Consensus 132 ~~~~~~~~----~~v~~~g~----~~~~~~~~~~~-~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~ 202 (294)
.+.+++++ .+|.++|+ ++.+++..+|+ .+|++++||..|+||++++|||+||+|||+|+.++..+++ .
T Consensus 628 ~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV---~ 704 (816)
T 3s28_A 628 KMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEII---V 704 (816)
T ss_dssp HHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHC---C
T ss_pred HHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHH---c
Confidence 66666554 36999994 45589999998 6799999999999999999999999999999999999999 8
Q ss_pred CCcceeecCCCCHHHHHHHHHHHh----hChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Q 022615 203 DGKIGYLFNPGDLDDCLSKLEPLL----YNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAA 263 (294)
Q Consensus 203 ~~~~g~~~~~~d~~~l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~~~~ 263 (294)
++.+|+++++.|+++++++|.+++ .|++.++++++++++.+ ++|||+.+++++. .+|+..
T Consensus 705 dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll-~lY~~~ 769 (816)
T 3s28_A 705 HGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLL-TLTGVY 769 (816)
T ss_dssp BTTTBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHH-HHHHHH
T ss_pred cCCcEEEeCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHH
Confidence 899999999999999999997776 89999999999999999 6799999999999 799876
No 12
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=2.1e-32 Score=236.39 Aligned_cols=228 Identities=22% Similarity=0.297 Sum_probs=184.3
Q ss_pred HHHHHHHHHhCCeEE-ecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccch----HHHHHhhcCCCCCceEEEee
Q 022615 24 WLVIKFLHRAADLTL-VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS----EMRWRLSNGEPDKPLIVHVG 98 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii-~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~G 98 (294)
+.+.+.++.++|.++ ++|+..++. .+..++.+||||+|...+.+..... ..+.+. ...++.++++++|
T Consensus 166 ~~~~~~~~~~~~~~i~~~s~~~~~~------~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~i~~vG 238 (416)
T 2x6q_A 166 WEFLRRFVEKYDRYIFHLPEYVQPE------LDRNKAVIMPPSIDPLSEKNVELKQTEILRILERF-DVDPEKPIITQVS 238 (416)
T ss_dssp HHHHHHHHTTSSEEEESSGGGSCTT------SCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHT-TCCTTSCEEEEEC
T ss_pred HHHHHHHHHhCCEEEEechHHHHhh------CCccceEEeCCCCChhhhcccccChhhHHHHHHHh-CCCCCCcEEEEEe
Confidence 344556677888776 566665542 2346899999999987665432111 222222 2245678999999
Q ss_pred cccccccHHHHHHHHHhC----CCcEEEEEcCCcc-----HHHHHhhhc----CCCeEEEeccc---chhHHHHHhcCCE
Q 022615 99 RLGVEKSLDFLKRVMDRL----PEARIAFIGDGPY-----REELEKMFT----GMPAVFTGMLL---GEELSQAYASGDV 162 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~-----~~~~~~~~~----~~~v~~~g~~~---~~~~~~~~~~ad~ 162 (294)
++.+.||++.+++++..+ |+++|+|+|.|+. .+.++++.+ ..+|.++|+++ ++++.++|+.||+
T Consensus 239 rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~ 318 (416)
T 2x6q_A 239 RFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDV 318 (416)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSE
T ss_pred ccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCE
Confidence 999999999999998765 7899999999864 233444332 35799999775 5799999999999
Q ss_pred EEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHH
Q 022615 163 FVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQE 242 (294)
Q Consensus 163 ~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 242 (294)
+++||..|++|++++|||+||+|||+++.++..+++ .++.+|++++ |+++++++|..+++|++.++++++++++.
T Consensus 319 ~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~e~i---~~~~~g~l~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~ 393 (416)
T 2x6q_A 319 ILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQI---VDGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKER 393 (416)
T ss_dssp EEECCSSCSSCHHHHHHHHTTCCEEEESCHHHHHHC---CBTTTEEEES--SHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEECCCcCCCccHHHHHHHcCCCEEEccCCCChhhe---ecCCCeEEEC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 7889999998 99999999999999999999999999999
Q ss_pred HH-hCCHHHHHHHHHHHHHHHHH
Q 022615 243 ME-KYDWRAATRTIRNEQYNAAI 264 (294)
Q Consensus 243 ~~-~~s~~~~~~~~~~~l~~~~~ 264 (294)
+. +|+|+.+++++. .+|++++
T Consensus 394 ~~~~fs~~~~~~~~~-~~~~~l~ 415 (416)
T 2x6q_A 394 VRKNFIITKHMERYL-DILNSLG 415 (416)
T ss_dssp HHHHTBHHHHHHHHH-HHHHTC-
T ss_pred HHHHcCHHHHHHHHH-HHHHHhh
Confidence 85 799999999999 7888764
No 13
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=6.9e-33 Score=245.03 Aligned_cols=234 Identities=21% Similarity=0.287 Sum_probs=188.8
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhcc--------CCcCceEEeeccccCCCCCCCccc-------------------
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARV--------TAANKIRIWKKGVDSESFHPRFRS------------------- 77 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~--------~~~~~i~~i~~gvd~~~~~~~~~~------------------- 77 (294)
.+++..+..||.|+++|+..++.+.+.++ ....++.+|+||+|.+.|+|....
T Consensus 233 n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k 312 (536)
T 3vue_A 233 NWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNK 312 (536)
T ss_dssp EHHHHHHHHCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHH
T ss_pred hHHHHHHHhccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHH
Confidence 36788999999999999999999877543 234689999999999999874321
Q ss_pred hHHHHHhhc-CCCCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCCccH--HHHHhhhc--CCCeEEEecccc
Q 022615 78 SEMRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPYR--EELEKMFT--GMPAVFTGMLLG 150 (294)
Q Consensus 78 ~~~~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~~~~--~~~~~~~~--~~~v~~~g~~~~ 150 (294)
.......+. ..++.++|+++||+.+.||++.+++++..+ ++.+++++|.|... ..++.... ..++.+.+..+.
T Consensus 313 ~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~ 392 (536)
T 3vue_A 313 EALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNA 392 (536)
T ss_dssp HHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCH
T ss_pred HHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccH
Confidence 011111222 235678999999999999999999999887 46899999987533 23333332 346999999999
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCccee----------ecCCCCHHHHHH
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY----------LFNPGDLDDCLS 220 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~----------~~~~~d~~~l~~ 220 (294)
+++..+|+.||++++||..|+||++++|||+||+|||+++.++..|++ .++.+|+ ++++.|++++++
T Consensus 393 ~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V---~dg~~G~~~~~~~~~g~l~~~~d~~~la~ 469 (536)
T 3vue_A 393 PLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTV---IEGKTGFHMGRLSVDCKVVEPSDVKKVAA 469 (536)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHC---CBTTTEEECCCCCSCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchhee---eCCCCccccccCCCceeEECCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999 8888887 677778999999
Q ss_pred HHHHHhh--ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 022615 221 KLEPLLY--NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 264 (294)
Q Consensus 221 ~i~~ll~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~ 264 (294)
+|.+++. +++.++++.+++.+ ++|||++.++++. ++|+++.
T Consensus 470 ai~ral~~~~~~~~~~~~~~am~--~~fSW~~~A~~y~-~ly~~L~ 512 (536)
T 3vue_A 470 TLKRAIKVVGTPAYEEMVRNCMN--QDLSWKGPAKNWE-NVLLGLG 512 (536)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH--SCCSSHHHHHHHH-HHHHTTC
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH--hcCCHHHHHHHHH-HHHHHhh
Confidence 9998775 55556777665533 4699999999998 8999873
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2.7e-33 Score=235.93 Aligned_cols=203 Identities=19% Similarity=0.179 Sum_probs=181.0
Q ss_pred CCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHHHHHHHH
Q 022615 34 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVM 113 (294)
Q Consensus 34 ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~ 113 (294)
+|.++++|+.+++.+.+ ..++.++|||+|.+.+.+... ..++..+++|+|++.+.||++.+++++
T Consensus 120 ~d~ii~~S~~~~~~~~~-----~~~~~vi~ngvd~~~~~~~~~----------~~~~~~~i~~vG~~~~~Kg~~~li~a~ 184 (342)
T 2iuy_A 120 PVGCTYSSRAQRAHCGG-----GDDAPVIPIPVDPARYRSAAD----------QVAKEDFLLFMGRVSPHKGALEAAAFA 184 (342)
T ss_dssp CTTEEESCHHHHHHTTC-----CTTSCBCCCCBCGGGSCCSTT----------CCCCCSCEEEESCCCGGGTHHHHHHHH
T ss_pred ceEEEEcCHHHHHHHhc-----CCceEEEcCCCChhhcCcccc----------cCCCCCEEEEEeccccccCHHHHHHHH
Confidence 99999999999998876 468999999999887766432 123556899999999999999999999
Q ss_pred HhCCCcEEEEEcCCccHHHHHhhhcC--CCeEEEecccchhHHHHHhcCCEEEeecC----------CCCcchHHHHHHh
Q 022615 114 DRLPEARIAFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSE----------SETLGLVVLEAMS 181 (294)
Q Consensus 114 ~~~~~~~l~i~G~~~~~~~~~~~~~~--~~v~~~g~~~~~~~~~~~~~ad~~l~ps~----------~e~~~~~~~Ea~a 181 (294)
+.+ +++|+|+|.|+..+.++++.+. .+|.+.|+++++++.++|+.||++++||. .|++|++++|||+
T Consensus 185 ~~~-~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma 263 (342)
T 2iuy_A 185 HAC-GRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV 263 (342)
T ss_dssp HHH-TCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH
T ss_pred Hhc-CcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHh
Confidence 988 8999999999888777776553 58999999999999999999999999999 8999999999999
Q ss_pred cCCCEEeecCCCcccccccCCC--CcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Q 022615 182 SGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNE 258 (294)
Q Consensus 182 ~G~pvI~~~~~~~~e~~~~~~~--~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ 258 (294)
||+|||+++.++..|++ .+ +.+|+++++ |.++++++|.++++ ++++++.+ ++|+|+.+++++. .
T Consensus 264 ~G~PvI~s~~~~~~e~~---~~~~~~~g~~~~~-d~~~l~~~i~~l~~--------~~~~~~~~~~~~s~~~~~~~~~-~ 330 (342)
T 2iuy_A 264 SGTPVVGTGNGCLAEIV---PSVGEVVGYGTDF-APDEARRTLAGLPA--------SDEVRRAAVRLWGHVTIAERYV-E 330 (342)
T ss_dssp TTCCEEECCTTTHHHHG---GGGEEECCSSSCC-CHHHHHHHHHTSCC--------HHHHHHHHHHHHBHHHHHHHHH-H
T ss_pred cCCCEEEcCCCChHHHh---cccCCCceEEcCC-CHHHHHHHHHHHHH--------HHHHHHHHHHhcCHHHHHHHHH-H
Confidence 99999999999999999 77 889999999 99999999999986 56777777 6799999999999 8
Q ss_pred HHHHHHH
Q 022615 259 QYNAAIW 265 (294)
Q Consensus 259 l~~~~~~ 265 (294)
+|+++++
T Consensus 331 ~~~~~~~ 337 (342)
T 2iuy_A 331 QYRRLLA 337 (342)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9998864
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.97 E-value=2e-31 Score=229.18 Aligned_cols=218 Identities=9% Similarity=0.035 Sum_probs=168.6
Q ss_pred HHHHHHHHHhCC--eEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecc-
Q 022615 24 WLVIKFLHRAAD--LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL- 100 (294)
Q Consensus 24 ~~~~~~~~~~ad--~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~- 100 (294)
+.+.+.+++.++ .++++|+++++.+.+.+ .+..++.++|||+|.+.+.+.. ...++...++++|++
T Consensus 183 ~~~~~~~~~~~~~~~vi~~S~~~~~~l~~~g-~~~~~~~~i~~g~d~~~~~~~~----------~~~~~~~~il~~gr~~ 251 (413)
T 2x0d_A 183 YVLAESTYKYRGPQIAVFNSELLKQYFNNKG-YNFTDEYFFQPKINTTLKNYIN----------DKRQKEKIILVYGRPS 251 (413)
T ss_dssp HHHHHHTTSCCSCEEEEEESHHHHHHHHHHT-CCCSEEEEECCCCCHHHHTTTT----------SCCCCCSEEEEEECTT
T ss_pred HHHHHHHhccCCceEEEEcCHHHHHHHHHcC-CCCCceEEeCCCcCchhhcccc----------cccCCCCEEEEEecCc
Confidence 345667777766 58899999999998863 3445789999999876443210 022355678899996
Q ss_pred cccccHHHHHHHHHhC----CC---cEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcc
Q 022615 101 GVEKSLDFLKRVMDRL----PE---ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 173 (294)
Q Consensus 101 ~~~k~~~~l~~~~~~~----~~---~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~ 173 (294)
.+.||++.+++|+..+ |+ ++|+++|+|+... ++....+|+++|+++.+++.++|+.||++++||..|++|
T Consensus 252 ~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~~---~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g 328 (413)
T 2x0d_A 252 VKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKDI---ALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPS 328 (413)
T ss_dssp CGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCCE---EEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchhh---hcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCC
Confidence 6889999999998765 54 8999999886542 222234799999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHH
Q 022615 174 LVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATR 253 (294)
Q Consensus 174 ~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~ 253 (294)
++++||||||+|||+++ ++..|++ .++.+|+++++.|+++++++|..+++|++.+++ ++++.+++|+|+...+
T Consensus 329 ~~~lEAmA~G~PVV~~~-~g~~e~v---~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~---~~~~~~~~~~W~~~~~ 401 (413)
T 2x0d_A 329 YPPLEMAHFGLRVITNK-YENKDLS---NWHSNIVSLEQLNPENIAETLVELCMSFNNRDV---DKKESSNMMFYINEFN 401 (413)
T ss_dssp SHHHHHHHTTCEEEEEC-BTTBCGG---GTBTTEEEESSCSHHHHHHHHHHHHHHTC----------CCBSCGGGCCCC-
T ss_pred cHHHHHHhCCCcEEEeC-CCcchhh---hcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH---hHHHHHHhCCHHHHHH
Confidence 99999999999999965 4567999 788899999999999999999999998887665 5555567899999988
Q ss_pred HHHHHHHHHHH
Q 022615 254 TIRNEQYNAAI 264 (294)
Q Consensus 254 ~~~~~l~~~~~ 264 (294)
++ ++|++++
T Consensus 402 ~~--~~~~~l~ 410 (413)
T 2x0d_A 402 EF--SFIKEIE 410 (413)
T ss_dssp ----TTHHHHH
T ss_pred HH--HHHHHHH
Confidence 83 5777764
No 16
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.97 E-value=8.2e-30 Score=198.36 Aligned_cols=180 Identities=23% Similarity=0.347 Sum_probs=154.2
Q ss_pred eeccccCCCCC--CCcc-----chHHHHHhhcCCCCCceEEEeeccc-ccccHHHHHHHHHhC------CCcEEEEEcCC
Q 022615 62 WKKGVDSESFH--PRFR-----SSEMRWRLSNGEPDKPLIVHVGRLG-VEKSLDFLKRVMDRL------PEARIAFIGDG 127 (294)
Q Consensus 62 i~~gvd~~~~~--~~~~-----~~~~~~~~~~~~~~~~~i~~~G~~~-~~k~~~~l~~~~~~~------~~~~l~i~G~~ 127 (294)
||||+|.+.|. +... ....+.+. ..++..+|+|+|++. +.||++.+++++..+ ++++|+|+|.+
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~~r~~~--~~~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~ 79 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKSLLSKF--GMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG 79 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHHHHHHT--TCCSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB
T ss_pred CCCccChhhccccccccchhhHHHHHHHHc--CCCCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 69999999998 6542 23333333 334556999999999 999999999999776 47999999998
Q ss_pred c--cHHHHHhhhcCC-CeEE-EecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCC
Q 022615 128 P--YREELEKMFTGM-PAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD 203 (294)
Q Consensus 128 ~--~~~~~~~~~~~~-~v~~-~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~ 203 (294)
+ ..+.+++++... +|++ .|+++++++..+|+.||++++|+..|++|++++|||+||+|||+++.++..+++ +
T Consensus 80 ~~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~----~ 155 (200)
T 2bfw_A 80 DPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII----T 155 (200)
T ss_dssp CHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC----C
T ss_pred ChHHHHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHHHc----C
Confidence 8 777777776654 7999 999999999999999999999999999999999999999999999999999888 4
Q ss_pred CcceeecCCCCHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHhCC
Q 022615 204 GKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYD 247 (294)
Q Consensus 204 ~~~g~~~~~~d~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~s 247 (294)
+.+|+++++.|+++++++|.++++ |++.+.++++++++.+++||
T Consensus 156 ~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~fs 200 (200)
T 2bfw_A 156 NETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFS 200 (200)
T ss_dssp TTTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 788999999999999999999999 99999999999999886565
No 17
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.97 E-value=1.3e-29 Score=191.28 Aligned_cols=158 Identities=23% Similarity=0.336 Sum_probs=137.1
Q ss_pred CceEEEeecccccccHHHHHHHHHhC---CCcEEEEEcCCccHHHHHhhhcCC--CeEEEecccchhHHHHHhcCCEEEe
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRL---PEARIAFIGDGPYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~---~~~~l~i~G~~~~~~~~~~~~~~~--~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
+++|+|+|++.+.||++.+++++..+ ++++|+|+|.|+..+.+++++... ++.+ |+++++++.++|+.||++++
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v~ 80 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYVH 80 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEEE
Confidence 46899999999999999999999988 479999999999888888877644 5788 99999999999999999999
Q ss_pred ecCCCCcchHHHHHHhcCC-CEEe-ecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Q 022615 166 PSESETLGLVVLEAMSSGI-PVVG-VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 243 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~-pvI~-~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 243 (294)
||..|++|++++|||+||+ |||+ ++.++..+++ .++ +.++++.|+++++++|.+++++++.++++++++++.+
T Consensus 81 ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~---~~~--~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 155 (166)
T 3qhp_A 81 AANVESEAIACLEAISVGIVPVIANSPLSATRQFA---LDE--RSLFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSA 155 (166)
T ss_dssp CCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGC---SSG--GGEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhc---cCC--ceEEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9999 5678888988 444 4478888999999999999999999999999999999
Q ss_pred HhCCHHHHHHH
Q 022615 244 EKYDWRAATRT 254 (294)
Q Consensus 244 ~~~s~~~~~~~ 254 (294)
++|+|+.++++
T Consensus 156 ~~~s~~~~~~~ 166 (166)
T 3qhp_A 156 LNYTLENSVIQ 166 (166)
T ss_dssp HHHC-------
T ss_pred HHCChhhhhcC
Confidence 88999988763
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=7.6e-31 Score=225.54 Aligned_cols=205 Identities=15% Similarity=0.160 Sum_probs=169.5
Q ss_pred ccHHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecc
Q 022615 21 KPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL 100 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 100 (294)
...+.+++.+++.+|.++++|+.+++.+.+.+ ++.+||||+|.+.|.+.... ..++.++++|+|++
T Consensus 166 ~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~-----~i~vipngvd~~~f~~~~~~---------~~~~~~~i~~vGrl 231 (406)
T 2hy7_A 166 SYIEREFDRVAPTLDVIALVSPAMAAEVVSRD-----NVFHVGHGVDHNLDQLGDPS---------PYAEGIHAVAVGSM 231 (406)
T ss_dssp HHHHHHHHHHGGGCSEEEESCGGGGGGCSCST-----TEEECCCCBCTTHHHHHCSC---------SCCSSEEEEEECCT
T ss_pred HHHHHHHHHHHHhCCEEEEcCHHHHHHHHhcC-----CEEEEcCCcChHhcCccccc---------ccCCCcEEEEEecc
Confidence 34567889999999999999999999886542 89999999998776432111 12233789999999
Q ss_pred cccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHH
Q 022615 101 GVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 180 (294)
Q Consensus 101 ~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~ 180 (294)
.+.||+ +..+.+..++++|+|+|+|+ .+++....+|.++|+++++++.++|+.||++++||..|++|++++|||
T Consensus 232 ~~~Kg~--~~~l~~~~~~~~l~ivG~g~----~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm 305 (406)
T 2hy7_A 232 LFDPEF--FVVASKAFPQVTFHVIGSGM----GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSS 305 (406)
T ss_dssp TBCHHH--HHHHHHHCTTEEEEEESCSS----CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHC
T ss_pred ccccCH--HHHHHHhCCCeEEEEEeCch----HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHH
Confidence 999998 44555667899999999987 233333457999999999999999999999999999999999999999
Q ss_pred -------hcCCCEEeecCCCcccccccCCCCcceee-cCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHH
Q 022615 181 -------SSGIPVVGVRAGGIPDIIPEDQDGKIGYL-FNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAAT 252 (294)
Q Consensus 181 -------a~G~pvI~~~~~~~~e~~~~~~~~~~g~~-~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~ 252 (294)
|||+|||+|+. + .++.+|++ ++++|+++++++|..++++++ +...++|+|+.++
T Consensus 306 ~Kl~eYla~G~PVIas~~------v---~~~~~G~l~v~~~d~~~la~ai~~ll~~~~---------~~~~~~~sw~~~a 367 (406)
T 2hy7_A 306 MKLLQYDFFGLPAVCPNA------V---VGPYKSRFGYTPGNADSVIAAITQALEAPR---------VRYRQCLNWSDTT 367 (406)
T ss_dssp HHHHHHHHHTCCEEEEGG------G---TCSCSSEEEECTTCHHHHHHHHHHHHHCCC---------CCCSCCCBHHHHH
T ss_pred HHHHHHhhCCCcEEEehh------c---ccCcceEEEeCCCCHHHHHHHHHHHHhCcc---------hhhhhcCCHHHHH
Confidence 99999999987 5 56788999 999999999999999999876 1234679999999
Q ss_pred HHHHHHH--HHHHH
Q 022615 253 RTIRNEQ--YNAAI 264 (294)
Q Consensus 253 ~~~~~~l--~~~~~ 264 (294)
++++ ++ |+.+.
T Consensus 368 ~~~~-~~~~y~~~~ 380 (406)
T 2hy7_A 368 DRVL-DPRAYPETR 380 (406)
T ss_dssp HHHH-CGGGSGGGB
T ss_pred HHHH-HhhcccccC
Confidence 9999 67 77653
No 19
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.95 E-value=1.1e-28 Score=214.71 Aligned_cols=197 Identities=17% Similarity=0.176 Sum_probs=157.4
Q ss_pred cCceEEeeccccCCCCCCCcc------chHHHHHhhcCCCCCceEEEeecccccccHHHHHHHHHhC----C----CcEE
Q 022615 56 ANKIRIWKKGVDSESFHPRFR------SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P----EARI 121 (294)
Q Consensus 56 ~~~i~~i~~gvd~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~----~----~~~l 121 (294)
..++.++|||+|.+.|.+... ....+.+. .++++|+++|++.+.||++.+++|++.+ | +++|
T Consensus 218 ~~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~----~~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~L 293 (482)
T 1uqt_A 218 AFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAEL----KNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRY 293 (482)
T ss_dssp EEEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHT----TTCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEE
T ss_pred EEEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHh----CCCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEE
Confidence 357899999999887754211 11222222 2578999999999999999999999765 4 3779
Q ss_pred EEEcCC-----cc----HHHHHhhhcC----------CCeEE-EecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHh
Q 022615 122 AFIGDG-----PY----REELEKMFTG----------MPAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 181 (294)
Q Consensus 122 ~i~G~~-----~~----~~~~~~~~~~----------~~v~~-~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a 181 (294)
+++|.+ +. .+.++++..+ .+|.+ .|.++.+++..+|+.||++++||..||||++++||||
T Consensus 294 v~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA 373 (482)
T 1uqt_A 294 TQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVA 373 (482)
T ss_dssp EEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHH
T ss_pred EEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHH
Confidence 999852 22 2334443321 13664 6899999999999999999999999999999999999
Q ss_pred cCC-----CEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 022615 182 SGI-----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAARQEMEKYDWRAATRTI 255 (294)
Q Consensus 182 ~G~-----pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~ 255 (294)
||+ |+|+|+.++..+.+ . +|+++++.|+++++++|.+++++ +++++++.+++++.+.+|+|+..++++
T Consensus 374 ~g~~~~~gpvV~S~~~G~~~~l---~---~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~ 447 (482)
T 1uqt_A 374 AQDPANPGVLVLSQFAGAANEL---T---SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECF 447 (482)
T ss_dssp HSCTTSCCEEEEETTBGGGGTC---T---TSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCCCCCCCEEEECCCCCHHHh---C---CeEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 997 89999988888877 2 78999999999999999999985 567889999999999889999999999
Q ss_pred HHHHHHHH
Q 022615 256 RNEQYNAA 263 (294)
Q Consensus 256 ~~~l~~~~ 263 (294)
+ ..|+++
T Consensus 448 l-~~l~~~ 454 (482)
T 1uqt_A 448 I-SDLKQI 454 (482)
T ss_dssp H-HHHHHS
T ss_pred H-HHHHhc
Confidence 9 666655
No 20
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.95 E-value=7.5e-27 Score=204.98 Aligned_cols=238 Identities=14% Similarity=0.157 Sum_probs=174.0
Q ss_pred HHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccc----hHHHHHh--------h--cCC-
Q 022615 24 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS----SEMRWRL--------S--NGE- 88 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~----~~~~~~~--------~--~~~- 88 (294)
..+++.....||.|+++|+.+++.++..++.+++.+ ||||+|...|.|.... ...+.+. . ...
T Consensus 251 ~~~EKaga~~AD~ITTVS~~yA~Ei~~Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~ 328 (725)
T 3nb0_A 251 YCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFD 328 (725)
T ss_dssp HHHHHHHHHHSSEEEESSHHHHHHHHHHTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSC
T ss_pred HHHHHHHHHhCCEEEECCHHHHHHHHHHhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 467999999999999999999999999877665544 9999999999885221 1111111 1 112
Q ss_pred -CCCceEEEeeccc-ccccHHHHHHHHHhCC--------C---cEEEEEcCCccH-------------------------
Q 022615 89 -PDKPLIVHVGRLG-VEKSLDFLKRVMDRLP--------E---ARIAFIGDGPYR------------------------- 130 (294)
Q Consensus 89 -~~~~~i~~~G~~~-~~k~~~~l~~~~~~~~--------~---~~l~i~G~~~~~------------------------- 130 (294)
++.++++.+||+. ..||++.+++++.++. + +.|+|+..+...
T Consensus 329 ~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 408 (725)
T 3nb0_A 329 LDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTS 408 (725)
T ss_dssp GGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence 3445666689998 6899999999997652 1 556666532100
Q ss_pred -------------------------H------H---HH------------------------------hhhc----C---
Q 022615 131 -------------------------E------E---LE------------------------------KMFT----G--- 139 (294)
Q Consensus 131 -------------------------~------~---~~------------------------------~~~~----~--- 139 (294)
+ . ++ ..++ .
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~ 488 (725)
T 3nb0_A 409 IGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSP 488 (725)
T ss_dssp HHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCT
T ss_pred HhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCc
Confidence 0 0 00 0000 0
Q ss_pred -C--CeEEE-ecccch------hHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCC-----
Q 022615 140 -M--PAVFT-GMLLGE------ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG----- 204 (294)
Q Consensus 140 -~--~v~~~-g~~~~~------~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~----- 204 (294)
. +|.|+ ++++.. ++.++|+.||++|+||.+|+||++++||||||+|||+++.++..+++ .++
T Consensus 489 ~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V---~dg~~~~~ 565 (725)
T 3nb0_A 489 SDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYM---EDLIETNQ 565 (725)
T ss_dssp TCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHH---HTTSCHHH
T ss_pred CCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhh---hccccccC
Confidence 0 13444 556554 69999999999999999999999999999999999999999999988 443
Q ss_pred --cceeecC---CCCHHHHHHHHHHHh----h-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q 022615 205 --KIGYLFN---PGDLDDCLSKLEPLL----Y-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFW 267 (294)
Q Consensus 205 --~~g~~~~---~~d~~~l~~~i~~ll----~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~~ 267 (294)
.+|+++. +.++++++++|.+++ . ++..+..++.++++.+++|+|++++++++ .+|+.++.+.
T Consensus 566 ~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl-~~Ye~aL~~~ 637 (725)
T 3nb0_A 566 AKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYV-KARQLALRRG 637 (725)
T ss_dssp HHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHH-HHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhc
Confidence 4688773 456666666665554 3 67778899999988888999999999999 8999998653
No 21
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.95 E-value=3e-27 Score=180.18 Aligned_cols=140 Identities=24% Similarity=0.395 Sum_probs=127.7
Q ss_pred CCCCceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhc------CCCeEEEecccchhHHHHHhcCC
Q 022615 88 EPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT------GMPAVFTGMLLGEELSQAYASGD 161 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~------~~~v~~~g~~~~~~~~~~~~~ad 161 (294)
.+++++|+|+|++.+.||++.++++++.+++++|+|+|.++..+.+++.+. ..+|.+.|+++++++..+|+.||
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad 99 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRCK 99 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHCTTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHCS
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhCCCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhCC
Confidence 456778999999999999999999999999999999999876655555544 34899999999999999999999
Q ss_pred EEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHH
Q 022615 162 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 231 (294)
Q Consensus 162 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~ 231 (294)
++++|+..|++|++++|||+||+|||+++.++..+++ .++.+|+++ +.|.++++++|.++++|++.
T Consensus 100 i~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i---~~~~~g~~~-~~d~~~l~~~i~~l~~~~~~ 165 (177)
T 2f9f_A 100 GLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETV---INEKTGYLV-NADVNEIIDAMKKVSKNPDK 165 (177)
T ss_dssp EEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHC---CBTTTEEEE-CSCHHHHHHHHHHHHHCTTT
T ss_pred EEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHh---cCCCccEEe-CCCHHHHHHHHHHHHhCHHH
Confidence 9999999999999999999999999999999999999 778899999 88999999999999998874
No 22
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.94 E-value=1.9e-26 Score=206.76 Aligned_cols=208 Identities=13% Similarity=0.101 Sum_probs=167.9
Q ss_pred hCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccccHHHHHHH
Q 022615 33 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRV 112 (294)
Q Consensus 33 ~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~ 112 (294)
.+|.++++|+..+. + .+++.+|||++.+....+.......+.+. ..++..+++++|++.+ ||++.++++
T Consensus 328 ~~d~~i~~s~~~~~-----~---~~~i~~ipn~~~~~~~~~~~~~~~~r~~~--~~~~~~~v~~~g~~~~-K~~~~li~a 396 (568)
T 2vsy_A 328 LGDAFALPPALEPF-----Y---SEHVLRLQGAFQPSDTSRVVAEPPSRTQC--GLPEQGVVLCCFNNSY-KLNPQSMAR 396 (568)
T ss_dssp EECTTTSCTTTGGG-----C---SSEEEECSSCSCCCCTTCCCCCCCCTGGG--TCCTTSCEEEECCCGG-GCCHHHHHH
T ss_pred EECCCcCCcccccC-----C---cceeEcCCCcCCCCCCCCCCCCCCCcccc--CCCCCCEEEEeCCccc-cCCHHHHHH
Confidence 47888888887654 2 26899999966543221111111112222 2234446779999999 999999998
Q ss_pred HHhC----CCcEEEEEc-CCccHHHHHhhhcC-----CCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhc
Q 022615 113 MDRL----PEARIAFIG-DGPYREELEKMFTG-----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 182 (294)
Q Consensus 113 ~~~~----~~~~l~i~G-~~~~~~~~~~~~~~-----~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~ 182 (294)
+..+ |+++|+|+| +|+..+.+++.+.. .+|.|.|+++++++..+|+.||++|+||.. |+|++++|||+|
T Consensus 397 ~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~g~~~lEAma~ 475 (568)
T 2vsy_A 397 MLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-NAHTTASDALWT 475 (568)
T ss_dssp HHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHT
T ss_pred HHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CCcHHHHHHHhC
Confidence 8654 899999999 88888877777653 469999999999999999999999999999 999999999999
Q ss_pred CCCEEe-------ecCC-------CcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH---Hh
Q 022615 183 GIPVVG-------VRAG-------GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM---EK 245 (294)
Q Consensus 183 G~pvI~-------~~~~-------~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~ 245 (294)
|+|||+ ++.+ +..+++ .+ |+++++++|..+++|++.+.++++++++.+ +.
T Consensus 476 G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v---~~----------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 542 (568)
T 2vsy_A 476 GCPVLTTPGETFAARVAGSLNHHLGLDEMN---VA----------DDAAFVAKAVALASDPAALTALHARVDVLRRASGV 542 (568)
T ss_dssp TCCEEBCCCSSGGGSHHHHHHHHHTCGGGB---CS----------SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSST
T ss_pred CCCEEeccCCCchHHHHHHHHHHCCChhhh---cC----------CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCC
Confidence 999999 9988 888877 22 899999999999999999999999999998 56
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 022615 246 YDWRAATRTIRNEQYNAAIWF 266 (294)
Q Consensus 246 ~s~~~~~~~~~~~l~~~~~~~ 266 (294)
|+|+.+++++. .+|++++..
T Consensus 543 f~~~~~~~~~~-~~y~~~~~~ 562 (568)
T 2vsy_A 543 FHMDGFADDFG-ALLQALARR 562 (568)
T ss_dssp TCHHHHHHHHH-HHHHHHHHT
T ss_pred CCHHHHHHHHH-HHHHHHHHH
Confidence 99999999998 899988754
No 23
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.94 E-value=7.1e-27 Score=199.01 Aligned_cols=220 Identities=18% Similarity=0.182 Sum_probs=171.0
Q ss_pred HHHHH-HHHhCCeEEecchhhHHHHHHhccCCcCceEEeecc-ccCCCCCCCc-cchHHHHHhhcCCCCCceEEEeeccc
Q 022615 25 LVIKF-LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG-VDSESFHPRF-RSSEMRWRLSNGEPDKPLIVHVGRLG 101 (294)
Q Consensus 25 ~~~~~-~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g-vd~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~G~~~ 101 (294)
++.+. +.+.+|.++++|+..++.+.+. +.+++++.++||| +|...+.+.. .....+.+. .++.++++++|++.
T Consensus 141 ~~~~~~~~~~~d~ii~~s~~~~~~~~~~-g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~---~~~~~vl~~~gr~~ 216 (375)
T 3beo_A 141 EMNRQLTGVMADLHFSPTAKSATNLQKE-NKDESRIFITGNTAIDALKTTVKETYSHPVLEKL---GNNRLVLMTAHRRE 216 (375)
T ss_dssp HHHHHHHHHHCSEEEESSHHHHHHHHHT-TCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT---TTSEEEEEECCCGG
T ss_pred HhhhhHHhhhhheeeCCCHHHHHHHHHc-CCCcccEEEECChhHhhhhhhhhhhhhHHHHHhc---cCCCeEEEEecccc
Confidence 34444 4456999999999999999874 5667899999999 7765443321 111222221 23445678999987
Q ss_pred cc-ccHHHHHHHHHhC----CCcEEEEEcCCcc---HHHHHhhhcC-CCeEEEecccchhHHHHHhcCCEEEeecCCCCc
Q 022615 102 VE-KSLDFLKRVMDRL----PEARIAFIGDGPY---REELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETL 172 (294)
Q Consensus 102 ~~-k~~~~l~~~~~~~----~~~~l~i~G~~~~---~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~ 172 (294)
+. ||++.+++++..+ |++++++ |.|+. .+.++++... .+|.+.|+++..++..+|+.||++++||
T Consensus 217 ~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s----- 290 (375)
T 3beo_A 217 NLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMNPVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS----- 290 (375)
T ss_dssp GTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-----
T ss_pred cchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCCHHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----
Confidence 75 9999999998754 6788654 65544 3444444332 5899999999899999999999999998
Q ss_pred chHHHHHHhcCCCEEeecC-CCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHH
Q 022615 173 GLVVLEAMSSGIPVVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAA 251 (294)
Q Consensus 173 ~~~~~Ea~a~G~pvI~~~~-~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~ 251 (294)
|+.++|||+||+|||+++. ++..+++ .++ +|+++++ |+++++++|.++++|++.+++|+++++++.++|+|+.+
T Consensus 291 g~~~lEA~a~G~Pvi~~~~~~~~~e~v---~~g-~g~~v~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i 365 (375)
T 3beo_A 291 GGVQEEAPSLGVPVLVLRDTTERPEGI---EAG-TLKLAGT-DEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERI 365 (375)
T ss_dssp HHHHHHHHHHTCCEEECSSCCSCHHHH---HTT-SEEECCS-CHHHHHHHHHHHHHCHHHHHHHCCCCCTTCCSCHHHHH
T ss_pred CChHHHHHhcCCCEEEecCCCCCceee---cCC-ceEEcCC-CHHHHHHHHHHHHhChHhHhhhhhcCCCCCCCcHHHHH
Confidence 6679999999999999964 8888988 666 8999976 99999999999999999999999988877777999999
Q ss_pred HHHHHHHHH
Q 022615 252 TRTIRNEQY 260 (294)
Q Consensus 252 ~~~~~~~l~ 260 (294)
++.+. .++
T Consensus 366 ~~~~~-~~~ 373 (375)
T 3beo_A 366 VEAIL-KHF 373 (375)
T ss_dssp HHHHH-HHT
T ss_pred HHHHH-HHh
Confidence 99887 443
No 24
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.93 E-value=5.6e-25 Score=189.60 Aligned_cols=222 Identities=14% Similarity=0.098 Sum_probs=172.9
Q ss_pred HHHhCCeEEecchhhHHHHHHh----c-cCC-------------cCceEEeeccccCCCCCCCccc--hHHHHHhhcCCC
Q 022615 30 LHRAADLTLVPSVAIGKDLEAA----R-VTA-------------ANKIRIWKKGVDSESFHPRFRS--SEMRWRLSNGEP 89 (294)
Q Consensus 30 ~~~~ad~ii~~s~~~~~~~~~~----~-~~~-------------~~~i~~i~~gvd~~~~~~~~~~--~~~~~~~~~~~~ 89 (294)
.+-.+|.|.+.+....+.|.+. . +.+ ..++.++|+|||.+.|.+.... ...+.+. .
T Consensus 204 gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~----~ 279 (496)
T 3t5t_A 204 GMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWA----D 279 (496)
T ss_dssp HHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHH----T
T ss_pred HHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHh----C
Confidence 3458999999998887776542 2 211 1367899999999988765321 2223332 2
Q ss_pred CCceEEEeecccccccHHHHHHHHHhC----CC---cEEEEEcC-----CccHH----HHHhhhcCC-------CeEEEe
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRL----PE---ARIAFIGD-----GPYRE----ELEKMFTGM-------PAVFTG 146 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~----~~---~~l~i~G~-----~~~~~----~~~~~~~~~-------~v~~~g 146 (294)
++++|+++|++.+.||+..+++|+ .+ |+ +.|+++|. ++..+ .++++..+. .|.++|
T Consensus 280 ~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g 358 (496)
T 3t5t_A 280 GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDN 358 (496)
T ss_dssp TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeC
Confidence 578999999999999999999998 54 54 56777763 33333 333332221 589999
Q ss_pred cccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcC---CCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHH
Q 022615 147 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG---IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 147 ~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G---~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~ 223 (294)
.++.+++..+|+.||++++||..||||++.+|||||| .|+|+|+.+|..+.+ +.+|++++|.|+++++++|.
T Consensus 359 ~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l-----~~~allVnP~D~~~lA~AI~ 433 (496)
T 3t5t_A 359 DNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVL-----GEYCRSVNPFDLVEQAEAIS 433 (496)
T ss_dssp CCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH-----GGGSEEECTTBHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh-----CCCEEEECCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999997 899999999888888 45799999999999999999
Q ss_pred HHhhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 022615 224 PLLYNQ-ELRETMGQAARQEMEKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 224 ~ll~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~ 261 (294)
+++.++ ++++++.++.++.+.++++...++.+++.+-.
T Consensus 434 ~aL~m~~~er~~r~~~~~~~V~~~d~~~W~~~fl~~L~~ 472 (496)
T 3t5t_A 434 AALAAGPRQRAEAAARRRDAARPWTLEAWVQAQLDGLAA 472 (496)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhh
Confidence 999864 67888889999999999999999999966633
No 25
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.93 E-value=4.5e-27 Score=200.89 Aligned_cols=229 Identities=15% Similarity=0.122 Sum_probs=172.7
Q ss_pred HHHHH-HHhCCeEEecchhhHHHHHHhccCCcCceEEeeccc-cCCCCCCCc-c--c---hHHHHHhh-cCCCCCceEEE
Q 022615 26 VIKFL-HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRF-R--S---SEMRWRLS-NGEPDKPLIVH 96 (294)
Q Consensus 26 ~~~~~-~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-d~~~~~~~~-~--~---~~~~~~~~-~~~~~~~~i~~ 96 (294)
..+.+ .+.+|.++++|+..++.+.+ .+.+++++.+++||+ |...+.+.. . . ...+.+.+ ...++..++++
T Consensus 133 ~~~~~~~~~~d~ii~~s~~~~~~l~~-~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 211 (384)
T 1vgv_A 133 ANRTLTGHLAMYHFSPTETSRQNLLR-ENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVT 211 (384)
T ss_dssp HHHHHHHTTCSEEEESSHHHHHHHHH-TTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEE
T ss_pred hhHHHHHhhccEEEcCcHHHHHHHHH-cCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEE
Confidence 44444 56699999999999999976 456678899999995 432111100 0 0 01111111 11223457889
Q ss_pred eeccccc-ccHHHHHHHHHhC----CCcEEEEE-cCCc-cHHHHHhhhc-CCCeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 97 VGRLGVE-KSLDFLKRVMDRL----PEARIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 97 ~G~~~~~-k~~~~l~~~~~~~----~~~~l~i~-G~~~-~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
+|++... ||++.+++++..+ +++++++. |.++ ..+.++++.. ..+|.+.|.++.+++.++|+.||++++||
T Consensus 212 ~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~S- 290 (384)
T 1vgv_A 212 GHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDS- 290 (384)
T ss_dssp CCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSEEEESS-
T ss_pred eCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcCCCEEEeCCCCHHHHHHHHHhCcEEEECC-
Confidence 9999775 9999999998664 68888875 5443 4556666543 24799999988899999999999999999
Q ss_pred CCCcchHHHHHHhcCCCEEeecC-CCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCC
Q 022615 169 SETLGLVVLEAMSSGIPVVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 247 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~~~-~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s 247 (294)
|..++|||+||+|||+++. ++..+++ +++ +|+++++ |+++++++|.++++|++.+++|+++++++.++++
T Consensus 291 ----g~~~lEA~a~G~PvI~~~~~~~~~e~v---~~g-~g~lv~~-d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~~~ 361 (384)
T 1vgv_A 291 ----GGIQEEAPSLGKPVLVMRDTTERPEAV---TAG-TVRLVGT-DKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQA 361 (384)
T ss_dssp ----STGGGTGGGGTCCEEEESSCCSCHHHH---HHT-SEEEECS-SHHHHHHHHHHHHHCHHHHHHHHSSCCTTCCSCH
T ss_pred ----cchHHHHHHcCCCEEEccCCCCcchhh---hCC-ceEEeCC-CHHHHHHHHHHHHhChHHHhhhhhccCCCcCCCH
Confidence 4458999999999999986 8888888 566 8999977 9999999999999999999999998887777799
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022615 248 WRAATRTIRNEQYNAAIWF 266 (294)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~ 266 (294)
|+.+++.+. .+|++..+.
T Consensus 362 ~~~i~~~~~-~~~~~~~~~ 379 (384)
T 1vgv_A 362 CSRILEALK-NNRISLGSH 379 (384)
T ss_dssp HHHHHHHHH-HTCCCC---
T ss_pred HHHHHHHHH-HHHHhhccc
Confidence 999999998 677766543
No 26
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.92 E-value=2.6e-25 Score=188.59 Aligned_cols=209 Identities=18% Similarity=0.192 Sum_probs=165.5
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCc-eEEEeeccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKP-LIVHVGRLGVE 103 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~G~~~~~ 103 (294)
...+++.+.+|.+++.++.. + + ++.+++||++...+.+... +..... .++.. ++++.|++.+.
T Consensus 133 ~~~~~~~~~~d~v~~~~~~~-------~--~--~~~~i~n~v~~~~~~~~~~----~~~~~~-~~~~~~il~~~g~~~~~ 196 (364)
T 1f0k_A 133 LTNKWLAKIATKVMQAFPGA-------F--P--NAEVVGNPVRTDVLALPLP----QQRLAG-REGPVRVLVVGGSQGAR 196 (364)
T ss_dssp HHHHHHTTTCSEEEESSTTS-------S--S--SCEECCCCCCHHHHTSCCH----HHHHTT-CCSSEEEEEECTTTCCH
T ss_pred HHHHHHHHhCCEEEecChhh-------c--C--CceEeCCccchhhcccchh----hhhccc-CCCCcEEEEEcCchHhH
Confidence 35667888999999988765 2 2 6789999998776644221 122222 23344 55667799999
Q ss_pred ccHHHHHHHHHhCC-CcE-EEEEcCCccHHHHHhhhcC---CCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHH
Q 022615 104 KSLDFLKRVMDRLP-EAR-IAFIGDGPYREELEKMFTG---MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLE 178 (294)
Q Consensus 104 k~~~~l~~~~~~~~-~~~-l~i~G~~~~~~~~~~~~~~---~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~E 178 (294)
|+.+.++++++.++ +++ ++++|.++. +.+++.+.+ .+|.+.|++ +++.++|+.||++++||. |++++|
T Consensus 197 k~~~~li~a~~~l~~~~~~l~i~G~~~~-~~l~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~sg----~~~~~E 269 (364)
T 1f0k_A 197 ILNQTMPQVAAKLGDSVTIWHQSGKGSQ-QSVEQAYAEAGQPQHKVTEFI--DDMAAAYAWADVVVCRSG----ALTVSE 269 (364)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEECCTTCH-HHHHHHHHHTTCTTSEEESCC--SCHHHHHHHCSEEEECCC----HHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCchH-HHHHHHHhhcCCCceEEecch--hhHHHHHHhCCEEEECCc----hHHHHH
Confidence 99999999998875 677 567888873 555555442 379999999 899999999999999983 899999
Q ss_pred HHhcCCCEEeecCCCcc--------cccccCCCCcceeecCCCC--HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCH
Q 022615 179 AMSSGIPVVGVRAGGIP--------DIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDW 248 (294)
Q Consensus 179 a~a~G~pvI~~~~~~~~--------e~~~~~~~~~~g~~~~~~d--~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~ 248 (294)
||+||+|||+++.++.. +++ + .+.|++++++| +++++++|.++ |++.++++++++++.+++|+|
T Consensus 270 Ama~G~Pvi~~~~~g~~~~q~~~~~~~~---~-~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~ 343 (364)
T 1f0k_A 270 IAAAGLPALFVPFQHKDRQQYWNALPLE---K-AGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDAT 343 (364)
T ss_dssp HHHHTCCEEECCCCCTTCHHHHHHHHHH---H-TTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHhCCCEEEeeCCCCchhHHHHHHHHH---h-CCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHH
Confidence 99999999999998764 344 3 34599999888 99999999998 999999999999998888999
Q ss_pred HHHHHHHHHHHHHHH
Q 022615 249 RAATRTIRNEQYNAA 263 (294)
Q Consensus 249 ~~~~~~~~~~l~~~~ 263 (294)
+.+++++. .+|++.
T Consensus 344 ~~~~~~~~-~~y~~~ 357 (364)
T 1f0k_A 344 ERVANEVS-RVARAL 357 (364)
T ss_dssp HHHHHHHH-HHHTTC
T ss_pred HHHHHHHH-HHHHHH
Confidence 99999998 788765
No 27
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.92 E-value=2e-24 Score=179.77 Aligned_cols=208 Identities=13% Similarity=0.038 Sum_probs=161.5
Q ss_pred HHHHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccc
Q 022615 23 MWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV 102 (294)
Q Consensus 23 ~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~ 102 (294)
....+++++++||.|+++|+.+++.+.+. |.+..++.++++. |... +.... ...++++++|+|+++.
T Consensus 123 ~~~~E~~~y~~aD~Ii~~S~~~~~~l~~~-G~~~~ki~~~~~~-~~~~--~~~~~---------~~~~~~~i~yaG~l~k 189 (339)
T 3rhz_A 123 LMDRTIAYYNKADVVVAPSQKMIDKLRDF-GMNVSKTVVQGMW-DHPT--QAPMF---------PAGLKREIHFPGNPER 189 (339)
T ss_dssp GHHHHHHHHTTCSEEEESCHHHHHHHHHT-TCCCSEEEECCSC-CCCC--CCCCC---------CCEEEEEEEECSCTTT
T ss_pred hHHHHHHHHHHCCEEEECCHHHHHHHHHc-CCCcCceeecCCC-CccC--ccccc---------ccCCCcEEEEeCCcch
Confidence 34579999999999999999999999885 4555677655543 2211 11000 1234578999999985
Q ss_pred cccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC-------CCCcchH
Q 022615 103 EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-------SETLGLV 175 (294)
Q Consensus 103 ~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~-------~e~~~~~ 175 (294)
...+..+ .++++|+|+|+|++. + .. ||+|+|+++.+++..+++.+|+.+.... ....|++
T Consensus 190 ~~~L~~l------~~~~~f~ivG~G~~~----~--l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~K 256 (339)
T 3rhz_A 190 FSFVKEW------KYDIPLKVYTWQNVE----L--PQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYK 256 (339)
T ss_dssp CGGGGGC------CCSSCEEEEESCCCC----C--CT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHH
T ss_pred hhHHHhC------CCCCeEEEEeCCccc----C--cC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHH
Confidence 3332221 378999999999875 1 23 9999999999999999999998887621 1256999
Q ss_pred HHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 022615 176 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 255 (294)
Q Consensus 176 ~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 255 (294)
++||||||+|||+++.++..+++ +++.+|+.++ +.+++.++|..+ +++.+++|++++++..+++++...+++.
T Consensus 257 l~eymA~G~PVI~~~~~~~~~~v---~~~~~G~~~~--~~~e~~~~i~~l--~~~~~~~m~~na~~~a~~~~~~~f~k~~ 329 (339)
T 3rhz_A 257 LGSFLAAGIPVIVQEGIANQELI---ENNGLGWIVK--DVEEAIMKVKNV--NEDEYIELVKNVRSFNPILRKGFFTRRL 329 (339)
T ss_dssp HHHHHHHTCCEEEETTCTTTHHH---HHHTCEEEES--SHHHHHHHHHHC--CHHHHHHHHHHHHHHTHHHHTTHHHHHH
T ss_pred HHHHHHcCCCEEEccChhHHHHH---HhCCeEEEeC--CHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 99999999999999999999999 7788999887 789999999887 4667899999999998888888888887
Q ss_pred HHHHHHHH
Q 022615 256 RNEQYNAA 263 (294)
Q Consensus 256 ~~~l~~~~ 263 (294)
+.+.+.++
T Consensus 330 l~~~~~~~ 337 (339)
T 3rhz_A 330 LTESVFQA 337 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76555444
No 28
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.90 E-value=3.2e-23 Score=176.05 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=152.3
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccccc
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 105 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~ 105 (294)
+.+++++.+|.++++|+..++.+.+. +.+ ++.++||+. +.+..... . .. ..+++++.|+ ..|+
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~l~~~-g~~--ki~vi~n~~----f~~~~~~~-----~--~l-~~~vi~~~~~--~~k~ 208 (374)
T 2xci_A 146 IEKILSKKFDLIIMRTQEDVEKFKTF-GAK--RVFSCGNLK----FICQKGKG-----I--KL-KGEFIVAGSI--HTGE 208 (374)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHHHTT-TCC--SEEECCCGG----GCCCCCSC-----C--CC-SSCEEEEEEE--CGGG
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHHc-CCC--eEEEcCCCc----cCCCcChh-----h--hh-cCCEEEEEeC--CCch
Confidence 77888999999999999999999885 454 899999973 11111000 0 01 1245666554 4688
Q ss_pred HHHHHHHHHhC----CCcEEEEEcCCccH-HHHHhhhcCCC------------eEEEecccchhHHHHHhcCCEEEeecC
Q 022615 106 LDFLKRVMDRL----PEARIAFIGDGPYR-EELEKMFTGMP------------AVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 106 ~~~l~~~~~~~----~~~~l~i~G~~~~~-~~~~~~~~~~~------------v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
.+.+++++..+ |+++|+|+|.|+.+ +.+++++.+.+ |.+.|+. +|+..+|+.||++++|+.
T Consensus 209 ~~~ll~A~~~l~~~~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~--~dl~~~y~~aDv~vl~ss 286 (374)
T 2xci_A 209 VEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRF--GILKELYPVGKIAIVGGT 286 (374)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSS--SCHHHHGGGEEEEEECSS
T ss_pred HHHHHHHHHHHHhhCCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCH--HHHHHHHHhCCEEEECCc
Confidence 99999998754 68999999999876 46777665433 4555554 899999999999888765
Q ss_pred -CCCcchHHHHHHhcCCCEEee-cCCCcccccccCCC-CcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Q 022615 169 -SETLGLVVLEAMSSGIPVVGV-RAGGIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 245 (294)
Q Consensus 169 -~e~~~~~~~Ea~a~G~pvI~~-~~~~~~e~~~~~~~-~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 245 (294)
.+++|.+++||||||+|||++ +.++..+.+ .+ ..+|.++.+.|+++++++|.++++| +.+++|++++++.+++
T Consensus 287 ~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~---~~~~~~G~l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~ 362 (374)
T 2xci_A 287 FVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLK---EFLEKEGAGFEVKNETELVTKLTELLSV-KKEIKVEEKSREIKGC 362 (374)
T ss_dssp SSSSCCCCCHHHHTTTCCEEECSCCTTSHHHH---HHHHHTTCEEECCSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHhCCCEEECCCccChHHHH---HHHHHCCCEEEeCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 467899999999999999975 678888877 33 2467888888999999999999999 9899999999998754
No 29
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.86 E-value=5.7e-21 Score=162.61 Aligned_cols=219 Identities=17% Similarity=0.135 Sum_probs=159.6
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccc-cCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE 103 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 103 (294)
...+++.+.+|.++++|+..++.+.+. +.+++++.+++|++ |...+.+. ....+. . ..++.+++++.|++...
T Consensus 138 ~~~~~~~~~~~~~~~~s~~~~~~l~~~-g~~~~ki~vi~n~~~d~~~~~~~--~~~~~~--~-~~~~~~vl~~~gr~~~~ 211 (376)
T 1v4v_A 138 ANRRLTDVLTDLDFAPTPLAKANLLKE-GKREEGILVTGQTGVDAVLLAAK--LGRLPE--G-LPEGPYVTVTMHRRENW 211 (376)
T ss_dssp HHHHHHHHHCSEEEESSHHHHHHHHTT-TCCGGGEEECCCHHHHHHHHHHH--HCCCCT--T-CCSSCEEEECCCCGGGG
T ss_pred HHHHHHHHHhceeeCCCHHHHHHHHHc-CCCcceEEEECCchHHHHhhhhh--hhHHHH--h-cCCCCEEEEEeCcccch
Confidence 445667788999999999999999875 56678899999975 42111000 000000 0 12344567788988777
Q ss_pred ccHHHHHHHHHhC----CCcEEEEE-cCCc-cHHHHHhhhcC-CCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHH
Q 022615 104 KSLDFLKRVMDRL----PEARIAFI-GDGP-YREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVV 176 (294)
Q Consensus 104 k~~~~l~~~~~~~----~~~~l~i~-G~~~-~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~ 176 (294)
|+++.++++++.+ |++++++. |.++ ..+.++++... .+|.+.|+++..++..+|+.||+++.|| +..+
T Consensus 212 k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad~~v~~S-----~g~~ 286 (376)
T 1v4v_A 212 PLLSDLAQALKRVAEAFPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS-----GGLQ 286 (376)
T ss_dssp GGHHHHHHHHHHHHHHCTTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESC-----HHHH
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCcEEEECC-----cCHH
Confidence 8999999998754 68888886 7665 45666666443 4799999888889999999999999998 2337
Q ss_pred HHHHhcCCCEEee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 022615 177 LEAMSSGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 255 (294)
Q Consensus 177 ~Ea~a~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 255 (294)
+|||+||+|||++ +.++..+.+ . .++|++++ .|+++++++|.++++|++.+++|++++ +.|.+...++++
T Consensus 287 lEA~a~G~PvI~~~~~~~~~~~~---~-~g~g~lv~-~d~~~la~~i~~ll~d~~~~~~~~~~~----~~~~~~~~~~~i 357 (376)
T 1v4v_A 287 EEGAALGVPVVVLRNVTERPEGL---K-AGILKLAG-TDPEGVYRVVKGLLENPEELSRMRKAK----NPYGDGKAGLMV 357 (376)
T ss_dssp HHHHHTTCCEEECSSSCSCHHHH---H-HTSEEECC-SCHHHHHHHHHHHHTCHHHHHHHHHSC----CSSCCSCHHHHH
T ss_pred HHHHHcCCCEEeccCCCcchhhh---c-CCceEECC-CCHHHHHHHHHHHHhChHhhhhhcccC----CCCCCChHHHHH
Confidence 8999999999987 567777776 3 34788885 499999999999999998888888633 446666666666
Q ss_pred HHHHHHHHH
Q 022615 256 RNEQYNAAI 264 (294)
Q Consensus 256 ~~~l~~~~~ 264 (294)
. +++.+.+
T Consensus 358 ~-~~i~~~~ 365 (376)
T 1v4v_A 358 A-RGVAWRL 365 (376)
T ss_dssp H-HHHHHHT
T ss_pred H-HHHHHHh
Confidence 6 4444443
No 30
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.75 E-value=3.6e-18 Score=145.99 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=148.1
Q ss_pred HHHHHH-HHhCCeEEecchhhHHHHHHhccCCcCceEEeeccc-cCCCCCCCc--c----chHHHHHhhcCCCCCce-EE
Q 022615 25 LVIKFL-HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRF--R----SSEMRWRLSNGEPDKPL-IV 95 (294)
Q Consensus 25 ~~~~~~-~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-d~~~~~~~~--~----~~~~~~~~~~~~~~~~~-i~ 95 (294)
...+.+ .+.+|.++++|+..++.+.+. |.+++++.+++|++ |...+.+.. . ....+.+.+...++..+ ++
T Consensus 157 ~~~r~~~~~~a~~~~~~se~~~~~l~~~-G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv 235 (396)
T 3dzc_A 157 EGNRKLTAALTQYHFAPTDTSRANLLQE-NYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILV 235 (396)
T ss_dssp HHHHHHHHHTCSEEEESSHHHHHHHHHT-TCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEE
T ss_pred HHHHHHHHHhcCEEECCCHHHHHHHHHc-CCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEE
Confidence 455554 678899999999999999885 56778999999854 432211110 0 01122222211233344 44
Q ss_pred Eeeccc-ccccHHHHHHHHHhC----CCcEEEEE-cCCc-cHHHHHhhhc-CCCeEEEecccchhHHHHHhcCCEEEeec
Q 022615 96 HVGRLG-VEKSLDFLKRVMDRL----PEARIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 96 ~~G~~~-~~k~~~~l~~~~~~~----~~~~l~i~-G~~~-~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
..++.. ..++++.++++++.+ |++++++. |.++ ..+.+++... ..+|.+.+++...++..+|+.||+++.+|
T Consensus 236 ~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S 315 (396)
T 3dzc_A 236 TGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPNVREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAHIILTDS 315 (396)
T ss_dssp ECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCSEEEESC
T ss_pred EECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcCEEEECC
Confidence 444432 346788899888765 78888875 6544 3445555433 34799999998889999999999999988
Q ss_pred CCCCcchHHHHHHhcCCCEEee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhC
Q 022615 168 ESETLGLVVLEAMSSGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKY 246 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 246 (294)
| +...||+++|+|+|++ +.++..+.+ +.+ .++++.. |.+++++++..+++|++.+++|++++.. |
T Consensus 316 ---G--g~~~EA~a~G~PvV~~~~~~~~~e~v---~~G-~~~lv~~-d~~~l~~ai~~ll~d~~~~~~m~~~~~~----~ 381 (396)
T 3dzc_A 316 ---G--GIQEEAPSLGKPVLVMRETTERPEAV---AAG-TVKLVGT-NQQQICDALSLLLTDPQAYQAMSQAHNP----Y 381 (396)
T ss_dssp ---S--GGGTTGGGGTCCEEECCSSCSCHHHH---HHT-SEEECTT-CHHHHHHHHHHHHHCHHHHHHHHTSCCT----T
T ss_pred ---c--cHHHHHHHcCCCEEEccCCCcchHHH---HcC-ceEEcCC-CHHHHHHHHHHHHcCHHHHHHHhhccCC----C
Confidence 2 3348999999999998 677777777 455 4566654 7999999999999999988888876543 4
Q ss_pred CHHHHHHHHH
Q 022615 247 DWRAATRTIR 256 (294)
Q Consensus 247 s~~~~~~~~~ 256 (294)
.....++++.
T Consensus 382 ~~~~aa~ri~ 391 (396)
T 3dzc_A 382 GDGKACQRIA 391 (396)
T ss_dssp CCSCHHHHHH
T ss_pred cCChHHHHHH
Confidence 3334444444
No 31
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.73 E-value=9.5e-18 Score=143.54 Aligned_cols=217 Identities=16% Similarity=0.151 Sum_probs=149.6
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeecc-ccCCCCCCCc-cchHHHHHhhcCCCCCceEEEeecccc-
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG-VDSESFHPRF-RSSEMRWRLSNGEPDKPLIVHVGRLGV- 102 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g-vd~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~G~~~~- 102 (294)
..+++.+.+|.++++|+..++.+.+.+ .+++++.+++|. +|...+.+.. .....+.+. .++..+++..|+...
T Consensus 162 ~r~~~~~~a~~~~~~se~~~~~l~~~G-i~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l---~~~~~vlv~~~r~~~~ 237 (403)
T 3ot5_A 162 NRQLTGVMADIHFSPTKQAKENLLAEG-KDPATIFVTGNTAIDALKTTVQKDYHHPILENL---GDNRLILMTAHRRENL 237 (403)
T ss_dssp HHHHHHHHCSEEEESSHHHHHHHHHTT-CCGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC---TTCEEEEECCCCHHHH
T ss_pred HHHHHHHhcCEEECCCHHHHHHHHHcC-CCcccEEEeCCchHHHHHhhhhhhcchHHHHhc---cCCCEEEEEeCccccc
Confidence 344456679999999999999998864 677899999985 4543222211 111222221 233444555665432
Q ss_pred cccHHHHHHHHHh----CCCcEEEEE-cCCc-cHHHHHhhhc-CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchH
Q 022615 103 EKSLDFLKRVMDR----LPEARIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLV 175 (294)
Q Consensus 103 ~k~~~~l~~~~~~----~~~~~l~i~-G~~~-~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~ 175 (294)
.++++.+++++.. .|++++++. |.++ ..+.+++... ..+|.+.++++..++..+|+.||+++.+| |..
T Consensus 238 ~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-----Gg~ 312 (403)
T 3ot5_A 238 GEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGV 312 (403)
T ss_dssp TTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEEEEEECC-----HHH
T ss_pred CcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccH
Confidence 3667888887765 478888876 5443 3444554332 34799999998889999999999999887 444
Q ss_pred HHHHHhcCCCEEee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 022615 176 VLEAMSSGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRT 254 (294)
Q Consensus 176 ~~Ea~a~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 254 (294)
.+||+++|+|+|+. +.++..+.+ +.+ +++++.. |.+++++++..+++|++.+++|++++..+.+..+++++++.
T Consensus 313 ~~EA~a~g~PvV~~~~~~~~~e~v---~~g-~~~lv~~-d~~~l~~ai~~ll~~~~~~~~m~~~~~~~g~~~aa~rI~~~ 387 (403)
T 3ot5_A 313 QEEAPGMGVPVLVLRDTTERPEGI---EAG-TLKLIGT-NKENLIKEALDLLDNKESHDKMAQAANPYGDGFAANRILAA 387 (403)
T ss_dssp HHHGGGTTCCEEECCSSCSCHHHH---HHT-SEEECCS-CHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHH
T ss_pred HHHHHHhCCCEEEecCCCcchhhe---eCC-cEEEcCC-CHHHHHHHHHHHHcCHHHHHHHHhhcCcccCCcHHHHHHHH
Confidence 48999999999998 667777777 444 6777765 89999999999999999888887655443333444444444
Q ss_pred HH
Q 022615 255 IR 256 (294)
Q Consensus 255 ~~ 256 (294)
+.
T Consensus 388 l~ 389 (403)
T 3ot5_A 388 IK 389 (403)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 32
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.61 E-value=5.8e-15 Score=126.97 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=119.7
Q ss_pred CCCceEEEeecccccccHHHHHHHHHhC--CCcEEEEEcCC-ccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe
Q 022615 89 PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~--~~~~l~i~G~~-~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
++..++++.|+.. .++.+.+.++++.+ .+.++++++.+ ...+.++.+ ..+|.+.|++ ++.++|+.||++|.
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~--~~~v~~~~~~---~~~~~l~~ad~~v~ 314 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEV--PANVRLESWV---PQAALLPHVDLVVH 314 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHTSSSEEEEECCSSCCCTTCCCC--CTTEEEESCC---CHHHHGGGCSEEEE
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHcCCCEEEEEECCCCChhhhccC--CCcEEEeCCC---CHHHHHhcCcEEEE
Confidence 3456778888885 55555554444333 25666666543 323333322 3479999998 48899999999997
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHHHH
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAA 239 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~ 239 (294)
.+ .+++++|||++|+|+|+.+.++ ..+.+ .+.+.|+.+++. |+++++++|.++++|++.++++++.+
T Consensus 315 ~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v---~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~ 387 (412)
T 3otg_A 315 HG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAV---AQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVA 387 (412)
T ss_dssp SC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CC----chHHHHHHHHhCCCEEecCCchhHHHHHHHH---HHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 65 3478999999999999976643 45566 566788888876 89999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHH
Q 022615 240 RQEMEKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 240 ~~~~~~~s~~~~~~~~~~~l~~ 261 (294)
++..+.++++.+++.+. .++.
T Consensus 388 ~~~~~~~~~~~~~~~~~-~l~~ 408 (412)
T 3otg_A 388 AEIAAMPGPDEVVRLLP-GFAS 408 (412)
T ss_dssp HHHHHSCCHHHHHTTHH-HHHC
T ss_pred HHHhcCCCHHHHHHHHH-HHhc
Confidence 99888899999999887 5654
No 33
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.60 E-value=4.8e-14 Score=119.17 Aligned_cols=207 Identities=18% Similarity=0.176 Sum_probs=138.7
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccccc
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 105 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~ 105 (294)
..+++.+.++.+++..+.. + ....++.++.+++..+.+...... .....+...++++.|+.+..+.
T Consensus 130 ~nr~l~~~a~~v~~~~~~~-------~-~~~~k~~~~g~pvr~~~~~~~~~~------~~~~~~~~~ilv~gGs~g~~~~ 195 (365)
T 3s2u_A 130 ANRSLAPIARRVCEAFPDT-------F-PASDKRLTTGNPVRGELFLDAHAR------APLTGRRVNLLVLGGSLGAEPL 195 (365)
T ss_dssp HHHHHGGGCSEEEESSTTS-------S-CC---CEECCCCCCGGGCCCTTSS------CCCTTSCCEEEECCTTTTCSHH
T ss_pred HHHhhccccceeeeccccc-------c-cCcCcEEEECCCCchhhccchhhh------cccCCCCcEEEEECCcCCcccc
Confidence 4566778889888766543 1 234567778888776655432211 1112223345666677787777
Q ss_pred HHHHHHHHHhCC---CcEEE-EEcCCccHHHHHhhhc--CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH
Q 022615 106 LDFLKRVMDRLP---EARIA-FIGDGPYREELEKMFT--GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 106 ~~~l~~~~~~~~---~~~l~-i~G~~~~~~~~~~~~~--~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea 179 (294)
.+.+.+++..++ ++.++ ++|.+. .+.+.+... ..++.+.+++ +++.++|+.||++|.-+ .++++.|+
T Consensus 196 ~~~~~~al~~l~~~~~~~vi~~~G~~~-~~~~~~~~~~~~~~~~v~~f~--~dm~~~l~~aDlvI~ra----G~~Tv~E~ 268 (365)
T 3s2u_A 196 NKLLPEALAQVPLEIRPAIRHQAGRQH-AEITAERYRTVAVEADVAPFI--SDMAAAYAWADLVICRA----GALTVSEL 268 (365)
T ss_dssp HHHHHHHHHTSCTTTCCEEEEECCTTT-HHHHHHHHHHTTCCCEEESCC--SCHHHHHHHCSEEEECC----CHHHHHHH
T ss_pred chhhHHHHHhcccccceEEEEecCccc-cccccceecccccccccccch--hhhhhhhccceEEEecC----CcchHHHH
Confidence 888889998874 34444 345443 334444333 3368889999 89999999999999643 36889999
Q ss_pred HhcCCCEEeecCCCc--------ccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHH
Q 022615 180 MSSGIPVVGVRAGGI--------PDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWR 249 (294)
Q Consensus 180 ~a~G~pvI~~~~~~~--------~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~ 249 (294)
+++|+|+|..+.+.. .+.+ .+.+.|++++.. ++++++++|.+++.|++.+++|++++++.......+
T Consensus 269 ~a~G~P~Ilip~p~~~~~~Q~~NA~~l---~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~~~aa~ 345 (365)
T 3s2u_A 269 TAAGLPAFLVPLPHAIDDHQTRNAEFL---VRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATR 345 (365)
T ss_dssp HHHTCCEEECC-----CCHHHHHHHHH---HTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCCTTHHH
T ss_pred HHhCCCeEEeccCCCCCcHHHHHHHHH---HHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCccHHH
Confidence 999999998765432 1234 455667777654 589999999999999999999999998876656666
Q ss_pred HHHHHHH
Q 022615 250 AATRTIR 256 (294)
Q Consensus 250 ~~~~~~~ 256 (294)
++++.++
T Consensus 346 ~ia~~i~ 352 (365)
T 3s2u_A 346 TVVDACL 352 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.59 E-value=5.1e-15 Score=128.08 Aligned_cols=206 Identities=14% Similarity=0.075 Sum_probs=136.4
Q ss_pred hCCeEEecchhhHHHHHHhccCCcCc-eEEeeccccCCCCCCCccchHHHHHhhc-CCCCCceEEEeeccccccc---HH
Q 022615 33 AADLTLVPSVAIGKDLEAARVTAANK-IRIWKKGVDSESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLGVEKS---LD 107 (294)
Q Consensus 33 ~ad~ii~~s~~~~~~~~~~~~~~~~~-i~~i~~gvd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~G~~~~~k~---~~ 107 (294)
.+|.+++.+....+..... .+ .+ +..++++++.....+. ... ..++..+++++|++. .+. +.
T Consensus 185 ~~~~~l~~~~~~~~~~~~~--~~-~~~v~~vG~~~~~~~~~~~---------~~~~~~~~~~v~v~~Gs~~-~~~~~~~~ 251 (430)
T 2iyf_A 185 HPPRSLVLIPKALQPHADR--VD-EDVYTFVGACQGDRAEEGG---------WQRPAGAEKVVLVSLGSAF-TKQPAFYR 251 (430)
T ss_dssp CCSSEEECSCGGGSTTGGG--SC-TTTEEECCCCC-----CCC---------CCCCTTCSEEEEEECTTTC-C-CHHHHH
T ss_pred CCCcEEEeCcHHhCCCccc--CC-CccEEEeCCcCCCCCCCCC---------CccccCCCCeEEEEcCCCC-CCcHHHHH
Confidence 5788888876554433221 22 24 6666655542110000 000 123446788999987 333 44
Q ss_pred HHHHHHHhCCCcEE-EEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCE
Q 022615 108 FLKRVMDRLPEARI-AFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 186 (294)
Q Consensus 108 ~l~~~~~~~~~~~l-~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pv 186 (294)
.++++++.++++++ +++|.+...+.++.+ ..+|.+.|++++. ++|+.||++|..+ ..++++|||++|+|+
T Consensus 252 ~~~~~l~~~~~~~~~~~~G~~~~~~~l~~~--~~~v~~~~~~~~~---~~l~~ad~~v~~~----G~~t~~Ea~~~G~P~ 322 (430)
T 2iyf_A 252 ECVRAFGNLPGWHLVLQIGRKVTPAELGEL--PDNVEVHDWVPQL---AILRQADLFVTHA----GAGGSQEGLATATPM 322 (430)
T ss_dssp HHHHHHTTCTTEEEEEECC---CGGGGCSC--CTTEEEESSCCHH---HHHTTCSEEEECC----CHHHHHHHHHTTCCE
T ss_pred HHHHHHhcCCCeEEEEEeCCCCChHHhccC--CCCeEEEecCCHH---HHhhccCEEEECC----CccHHHHHHHhCCCE
Confidence 55566665567777 567877654433221 3479999999654 7899999998754 247899999999999
Q ss_pred EeecCCC----cccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 022615 187 VGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 260 (294)
Q Consensus 187 I~~~~~~----~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~ 260 (294)
|+.+..+ ..+.+ .+.+.|+.++.. +.++++++|.++++|++.++++++.+++..+.++++.+++.+. .++
T Consensus 323 i~~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~ 398 (430)
T 2iyf_A 323 IAVPQAVDQFGNADML---QGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIE-AEL 398 (430)
T ss_dssp EECCCSHHHHHHHHHH---HHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-TTS
T ss_pred EECCCccchHHHHHHH---HHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCcHHHHHHHHH-HHh
Confidence 9987653 34445 456778888766 8899999999999999988999998888877789999988887 566
Q ss_pred HHHH
Q 022615 261 NAAI 264 (294)
Q Consensus 261 ~~~~ 264 (294)
++..
T Consensus 399 ~~~~ 402 (430)
T 2iyf_A 399 PARH 402 (430)
T ss_dssp CC--
T ss_pred hccc
Confidence 5543
No 35
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.51 E-value=1.4e-14 Score=123.01 Aligned_cols=218 Identities=14% Similarity=0.122 Sum_probs=142.1
Q ss_pred HHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccc-cCCCCC-CCccchHHHHHhhcCCCCCceEEEeecc---c
Q 022615 27 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFH-PRFRSSEMRWRLSNGEPDKPLIVHVGRL---G 101 (294)
Q Consensus 27 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~G~~---~ 101 (294)
.+.+-+.+|.++++++..++.+.+.+ .+++++.+++|.+ |.-.+. +.......+.+.+. .+++.+++..|+. +
T Consensus 140 R~~~~~~a~~~~~~te~~~~~l~~~G-~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl-~~~~~iLvt~hr~e~~~ 217 (385)
T 4hwg_A 140 RKIIDHISDVNITLTEHARRYLIAEG-LPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSL-TPKQYFLISSHREENVD 217 (385)
T ss_dssp HHHHHHHCSEEEESSHHHHHHHHHTT-CCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTC-CTTSEEEEEECCC----
T ss_pred HHHHHhhhceeecCCHHHHHHHHHcC-CCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCC-CcCCEEEEEeCCchhcC
Confidence 33445678999999999999998854 6778999999853 422111 00111122333332 2344455555553 3
Q ss_pred ccccHHHHHHHHHhCC---CcEEEEEcCCccHHHHHhh---hc-CCCeEEEecccchhHHHHHhcCCEEEeecCCCCcch
Q 022615 102 VEKSLDFLKRVMDRLP---EARIAFIGDGPYREELEKM---FT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGL 174 (294)
Q Consensus 102 ~~k~~~~l~~~~~~~~---~~~l~i~G~~~~~~~~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~ 174 (294)
..+++..+++++..+. ++.+++.......+.+++. .. ..+|.+.+.++..++..+|+.||+++.+| |.
T Consensus 218 ~~~~l~~ll~al~~l~~~~~~~vv~p~~p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S-----Gg 292 (385)
T 4hwg_A 218 VKNNLKELLNSLQMLIKEYNFLIIFSTHPRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS-----GT 292 (385)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC-----TT
T ss_pred cHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC-----cc
Confidence 3467888898887663 5666665432233444443 22 24788999988889999999999999776 45
Q ss_pred HHHHHHhcCCCEEeecCC-CcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHH-HHhCCHHHHH
Q 022615 175 VVLEAMSSGIPVVGVRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQE-MEKYDWRAAT 252 (294)
Q Consensus 175 ~~~Ea~a~G~pvI~~~~~-~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~-~~~~s~~~~~ 252 (294)
...||+++|+|+|+.... +.+|.+ +.| .+.++. .|.+++.+++..+++|++.+++|+.++..+ -+..+.++++
T Consensus 293 v~~EA~alG~Pvv~~~~~ter~e~v---~~G-~~~lv~-~d~~~i~~ai~~ll~d~~~~~~m~~~~~~~~g~g~aa~rI~ 367 (385)
T 4hwg_A 293 ITEEASILNLPALNIREAHERPEGM---DAG-TLIMSG-FKAERVLQAVKTITEEHDNNKRTQGLVPDYNEAGLVSKKIL 367 (385)
T ss_dssp HHHHHHHTTCCEEECSSSCSCTHHH---HHT-CCEECC-SSHHHHHHHHHHHHTTCBTTBCCSCCCHHHHTCCCHHHHHH
T ss_pred HHHHHHHcCCCEEEcCCCccchhhh---hcC-ceEEcC-CCHHHHHHHHHHHHhChHHHHHhhccCCCCCCCChHHHHHH
Confidence 679999999999987543 345666 334 455554 389999999999999987776666555444 3345555555
Q ss_pred HHHH
Q 022615 253 RTIR 256 (294)
Q Consensus 253 ~~~~ 256 (294)
+.+.
T Consensus 368 ~~l~ 371 (385)
T 4hwg_A 368 RIVL 371 (385)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 36
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.48 E-value=1.1e-13 Score=118.49 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=109.9
Q ss_pred CCCceEEEeecccc----------cccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh
Q 022615 89 PDKPLIVHVGRLGV----------EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA 158 (294)
Q Consensus 89 ~~~~~i~~~G~~~~----------~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 158 (294)
+...+++++|++.. .+.+..+++++..+ ++++++.+.+...+.+..+ ..|+.+.|+++ +.+++.
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~l~~~--~~~v~~~~~~~---~~~ll~ 299 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-GFEVVVAVSDKLAQTLQPL--PEGVLAAGQFP---LSAIMP 299 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG-TCEEEECCCC--------C--CTTEEEESCCC---HHHHGG
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-CCEEEEEeCCcchhhhccC--CCcEEEeCcCC---HHHHHh
Confidence 34567778898853 45577888888776 6888888876654444432 34899999984 788999
Q ss_pred cCCEEEeecCCCCcchHHHHHHhcCCCEEeecC----CCcccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHH
Q 022615 159 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA----GGIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELR 232 (294)
Q Consensus 159 ~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~----~~~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~ 232 (294)
.||++|.. +.+++++|||++|+|+|+.+. .+..+.+ .+.+.|+.++.. +.++++++|.++++|++.+
T Consensus 300 ~ad~~v~~----gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 372 (398)
T 4fzr_A 300 ACDVVVHH----GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLL---HAAGAGVEVPWEQAGVESVLAACARIRDDSSYV 372 (398)
T ss_dssp GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHH---HHTTSEEECC-------CHHHHHHHHHHCTHHH
T ss_pred hCCEEEec----CCHHHHHHHHHhCCCEEecCCchhHHHHHHHH---HHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 99999954 346889999999999999544 3555666 567789888876 7889999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Q 022615 233 ETMGQAARQEMEKYDWRAATRTIR 256 (294)
Q Consensus 233 ~~~~~~~~~~~~~~s~~~~~~~~~ 256 (294)
+++++.+++..+..+++.+++.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 373 GNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHh
Confidence 999999988888899999887764
No 37
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.43 E-value=7.6e-13 Score=99.50 Aligned_cols=131 Identities=15% Similarity=0.241 Sum_probs=97.7
Q ss_pred CCCceEEEeeccc---ccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe
Q 022615 89 PDKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 89 ~~~~~i~~~G~~~---~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
+...+++++|+.. +.+.+..+++++..++ .++++++.+...+ . ...|+.+.++++++++..+ ..||++|.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~-~~~~~~~g~~~~~---~--~~~~v~~~~~~~~~~~l~~-~~ad~~I~ 92 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQIP-QKVLWRFDGNKPD---T--LGLNTRLYKWIPQNDLLGH-PKTRAFIT 92 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTSS-SEEEEECCSSCCT---T--CCTTEEEESSCCHHHHHTS-TTEEEEEE
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhCC-CeEEEEECCcCcc---c--CCCcEEEecCCCHHHHhcC-CCcCEEEE
Confidence 3456888899985 6778888999998775 6777776554321 1 1348999999987554332 89999997
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHH
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRE 233 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~ 233 (294)
. +.+++++|+|++|+|+|+.+..+ ..+.+ .+.+.|+.++.. +.++++++|.+++.|++.++
T Consensus 93 ~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 159 (170)
T 2o6l_A 93 H----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHM---KARGAAVRVDFNTMSSTDLLNALKRVINDPSYKE 159 (170)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HTTTSEEECCTTTCCHHHHHHHHHHHHHCHHHHH
T ss_pred c----CCccHHHHHHHcCCCEEeccchhhHHHHHHHH---HHcCCeEEeccccCCHHHHHHHHHHHHcCHHHHH
Confidence 4 34689999999999999987642 34455 556788888766 78999999999999876433
No 38
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.41 E-value=3.3e-12 Score=109.26 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=117.6
Q ss_pred CCCceEEEeecccccc--cHHHHHHHHHhCCCcEEEE-EcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe
Q 022615 89 PDKPLIVHVGRLGVEK--SLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~k--~~~~l~~~~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
+...++++.|+....+ .+..+++++...+ +++++ +|.+...+.+.+ ...|+.+.+++++. ++|..||++|.
T Consensus 230 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~--~~~~v~~~~~~~~~---~ll~~ad~~v~ 303 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEHPEFFRACAQAFADTP-WHVVMAIGGFLDPAVLGP--LPPNVEAHQWIPFH---SVLAHARACLT 303 (402)
T ss_dssp TCCEEEEECCSCSSCCHHHHHHHHHHHTTSS-CEEEEECCTTSCGGGGCS--CCTTEEEESCCCHH---HHHTTEEEEEE
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHHhcCC-cEEEEEeCCcCChhhhCC--CCCcEEEecCCCHH---HHHhhCCEEEE
Confidence 3456788889886655 4666777777666 55554 576544433332 23489999999554 89999999987
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeecC-----CCcccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHHH
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVRA-----GGIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQA 238 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~~-----~~~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~ 238 (294)
.+. .++++|++++|+|+|+... ....+.+ .+.+.|..+..+ +.+++++++.++++|++.++++++.
T Consensus 304 ~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~ 376 (402)
T 3ia7_A 304 HGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERV---IELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRM 376 (402)
T ss_dssp CCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHH---HHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHH---HHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 652 4778999999999996544 3445555 456778888765 8999999999999999988888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Q 022615 239 ARQEMEKYDWRAATRTIRNEQYN 261 (294)
Q Consensus 239 ~~~~~~~~s~~~~~~~~~~~l~~ 261 (294)
+++..+..+++..++.+. .++.
T Consensus 377 ~~~~~~~~~~~~~~~~i~-~~~~ 398 (402)
T 3ia7_A 377 QRDILSSGGPARAADEVE-AYLG 398 (402)
T ss_dssp HHHHHTSCHHHHHHHHHH-HHHH
T ss_pred HHHHhhCChHHHHHHHHH-HHHh
Confidence 888777788888888776 4543
No 39
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.39 E-value=8.1e-13 Score=112.78 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=117.0
Q ss_pred CCceEEEeecccccc-c----HHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEE
Q 022615 90 DKPLIVHVGRLGVEK-S----LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 164 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k-~----~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l 164 (294)
+..+++..|+....+ + +..++++ +.+|++++++.|.+...+.+... ..|+.+.++++..+ ++..||++|
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~~l~~~--~~~v~~~~~~~~~~---ll~~ad~~v 291 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEHRALLTDL--PDNARIAESVPLNL---FLRTCELVI 291 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGGGGGCTTC--CTTEEECCSCCGGG---TGGGCSEEE
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcchhhcccC--CCCEEEeccCCHHH---HHhhCCEEE
Confidence 345677778885422 2 5556667 77788999999876544333322 34799999986654 559999999
Q ss_pred eecCCCCcchHHHHHHhcCCCEEeecC----CCcccccccCCCCcceeecCC----CCHHHHHHHHHHHhhChHHHHHHH
Q 022615 165 MPSESETLGLVVLEAMSSGIPVVGVRA----GGIPDIIPEDQDGKIGYLFNP----GDLDDCLSKLEPLLYNQELRETMG 236 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~G~pvI~~~~----~~~~e~~~~~~~~~~g~~~~~----~d~~~l~~~i~~ll~~~~~~~~~~ 236 (294)
.. +.+++++|||++|+|+|+.+. ....+.+ .+.+.|..+.+ .+.+++.+++.++++|++.+++++
T Consensus 292 ~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~ 364 (391)
T 3tsa_A 292 CA----GGSGTAFTATRLGIPQLVLPQYFDQFDYARNL---AAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAI 364 (391)
T ss_dssp EC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHH---HHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHH
T ss_pred eC----CCHHHHHHHHHhCCCEEecCCcccHHHHHHHH---HHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 54 345789999999999999544 3344555 56778888887 689999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHH
Q 022615 237 QAARQEMEKYDWRAATRTIR 256 (294)
Q Consensus 237 ~~~~~~~~~~s~~~~~~~~~ 256 (294)
+.+++..+..+++.+++.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~i~ 384 (391)
T 3tsa_A 365 KLSDEITAMPHPAALVRTLE 384 (391)
T ss_dssp HHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 98888888899998888776
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.38 E-value=1.1e-11 Score=105.41 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=114.1
Q ss_pred CCceEEEeeccccc-------ccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCE
Q 022615 90 DKPLIVHVGRLGVE-------KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDV 162 (294)
Q Consensus 90 ~~~~i~~~G~~~~~-------k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~ 162 (294)
...++++.|++... +.+..+++++... ++++++.+.+...+.+... ..++.+ |+++. .++|..||+
T Consensus 210 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~g~~~~~~l~~~--~~~v~~-~~~~~---~~~l~~~d~ 282 (384)
T 2p6p_A 210 RQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-DVELIVAAPDTVAEALRAE--VPQARV-GWTPL---DVVAPTCDL 282 (384)
T ss_dssp SCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-TCEEEEECCHHHHHHHHHH--CTTSEE-ECCCH---HHHGGGCSE
T ss_pred CCEEEEECCCCCccccccccHHHHHHHHHHHhcC-CcEEEEEeCCCCHHhhCCC--CCceEE-cCCCH---HHHHhhCCE
Confidence 35578889998764 6688888998876 6788876544433333332 458899 99854 567899999
Q ss_pred EEeecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHH
Q 022615 163 FVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMG 236 (294)
Q Consensus 163 ~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~ 236 (294)
+|..+ .+++++|||++|+|+|+.+..+ ..+.+ .+.+.|+.++.. +.++++++|.+++.|++.+++++
T Consensus 283 ~v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 355 (384)
T 2p6p_A 283 LVHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRV---ADYGAAIALLPGEDSTEAIADSCQELQAKDTYARRAQ 355 (384)
T ss_dssp EEECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHHTSEEECCTTCCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred EEeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHH---HHCCCeEecCcCCCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 99763 3578999999999999987642 44445 445678877754 78999999999999999888888
Q ss_pred HHHHHHHHhCCHHHHHHHHH
Q 022615 237 QAARQEMEKYDWRAATRTIR 256 (294)
Q Consensus 237 ~~~~~~~~~~s~~~~~~~~~ 256 (294)
+.+.+....-..+..+..+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~i~ 375 (384)
T 2p6p_A 356 DLSREISGMPLPATVVTALE 375 (384)
T ss_dssp HHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 88877766666776666555
No 41
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.34 E-value=8.8e-12 Score=106.65 Aligned_cols=150 Identities=14% Similarity=0.108 Sum_probs=112.8
Q ss_pred CCceEEEeeccc----ccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe
Q 022615 90 DKPLIVHVGRLG----VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 90 ~~~~i~~~G~~~----~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
...++++.|++. ..+.+..+++++... ++++++++.+...+.+... ..|+.+.|++ ++.++|..||++|.
T Consensus 232 ~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~g~~~~~~l~~~--~~~v~~~~~~---~~~~ll~~ad~~v~ 305 (398)
T 3oti_A 232 RPEVAITMGTIELQAFGIGAVEPIIAAAGEV-DADFVLALGDLDISPLGTL--PRNVRAVGWT---PLHTLLRTCTAVVH 305 (398)
T ss_dssp SCEEEECCTTTHHHHHCGGGHHHHHHHHHTS-SSEEEEECTTSCCGGGCSC--CTTEEEESSC---CHHHHHTTCSEEEE
T ss_pred CCEEEEEcCCCccccCcHHHHHHHHHHHHcC-CCEEEEEECCcChhhhccC--CCcEEEEccC---CHHHHHhhCCEEEE
Confidence 345778889884 344566677777766 6888888876654333322 3479999998 36678999999995
Q ss_pred ecCCCCcchHHHHHHhcCCCEEe----ecCCCcc--cccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHH
Q 022615 166 PSESETLGLVVLEAMSSGIPVVG----VRAGGIP--DIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQ 237 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~----~~~~~~~--e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~ 237 (294)
. +.+++++|||++|+|+|+ .+..... +.+ .+.+.|+.++.. +.+.+. ++++|++.++++++
T Consensus 306 ~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~---~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~ 374 (398)
T 3oti_A 306 H----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAV---SRRGIGLVSTSDKVDADLLR----RLIGDESLRTAARE 374 (398)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHH---HHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHH
T ss_pred C----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHH---HHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHH
Confidence 4 345789999999999999 4556666 777 567788888755 455554 78889999999999
Q ss_pred HHHHHHHhCCHHHHHHHHH
Q 022615 238 AARQEMEKYDWRAATRTIR 256 (294)
Q Consensus 238 ~~~~~~~~~s~~~~~~~~~ 256 (294)
.+++.....+++.+++.+.
T Consensus 375 ~~~~~~~~~~~~~~~~~l~ 393 (398)
T 3oti_A 375 VREEMVALPTPAETVRRIV 393 (398)
T ss_dssp HHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 9988888899999998876
No 42
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.30 E-value=7.6e-12 Score=108.51 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=113.0
Q ss_pred CceEEEeecccc-----cccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe
Q 022615 91 KPLIVHVGRLGV-----EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 91 ~~~i~~~G~~~~-----~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
..++++.|+... .+.+..+++++..+ ++++++.+.+...+.+.. ...||.+.+++++ .++|..||++|.
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~g~~~~~~l~~--~~~~v~~~~~~~~---~~ll~~ad~~V~ 341 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV-DAEIIATFDAQQLEGVAN--IPDNVRTVGFVPM---HALLPTCAATVH 341 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS-SSEEEECCCTTTTSSCSS--CCSSEEECCSCCH---HHHGGGCSEEEE
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC-CCEEEEEECCcchhhhcc--CCCCEEEecCCCH---HHHHhhCCEEEE
Confidence 457888998865 37788889999876 678877765543322221 1347999999965 456899999997
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHHHH
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAA 239 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~ 239 (294)
. +.++++.|++++|+|+|+.+..+ ..+.+ .+.+.|+.++.. +.+++.++|.++++|++.++++++.+
T Consensus 342 ~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 414 (441)
T 2yjn_A 342 H----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRT---QEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMR 414 (441)
T ss_dssp C----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHHTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHH---HHcCCEEEcccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4 34678999999999999987632 34445 455678887765 78999999999999999888888888
Q ss_pred HHHHHhCCHHHHHHHHH
Q 022615 240 RQEMEKYDWRAATRTIR 256 (294)
Q Consensus 240 ~~~~~~~s~~~~~~~~~ 256 (294)
++.......+.+++.+.
T Consensus 415 ~~~~~~~~~~~~~~~i~ 431 (441)
T 2yjn_A 415 DDMLAEPSPAEVVGICE 431 (441)
T ss_dssp HHHHTSCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 87777788888887776
No 43
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.30 E-value=1e-11 Score=106.78 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=114.7
Q ss_pred CCceEEEeecccccc--cHHHHHHHHHhCCCcEEEE-EcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEee
Q 022615 90 DKPLIVHVGRLGVEK--SLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 166 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k--~~~~l~~~~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~p 166 (294)
...++++.|+..... .+..++++++.++ +++++ +|.+...+.+..+ ..|+.+.+++++. +++..||++|..
T Consensus 247 ~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~~~~l~~~--~~~v~~~~~~~~~---~ll~~ad~~v~~ 320 (415)
T 3rsc_A 247 LPVVLVSLGTTFNDRPGFFRDCARAFDGQP-WHVVMTLGGQVDPAALGDL--PPNVEAHRWVPHV---KVLEQATVCVTH 320 (415)
T ss_dssp CCEEEEECTTTSCCCHHHHHHHHHHHTTSS-CEEEEECTTTSCGGGGCCC--CTTEEEESCCCHH---HHHHHEEEEEES
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHhcCC-cEEEEEeCCCCChHHhcCC--CCcEEEEecCCHH---HHHhhCCEEEEC
Confidence 456677888875433 3666777777776 77766 6766544433322 3489999999654 889999999876
Q ss_pred cCCCCcchHHHHHHhcCCCEEeecC----CCcccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHHHHH
Q 022615 167 SESETLGLVVLEAMSSGIPVVGVRA----GGIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAAR 240 (294)
Q Consensus 167 s~~e~~~~~~~Ea~a~G~pvI~~~~----~~~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~~ 240 (294)
+ ..++++|++++|+|+|+... ....+.+ ...+.|..+... +.+++.++|.++++|++.++++++.+.
T Consensus 321 ~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 393 (415)
T 3rsc_A 321 G----GMGTLMEALYWGRPLVVVPQSFDVQPMARRV---DQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRG 393 (415)
T ss_dssp C----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHH---HHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred C----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHH---HHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 4 24688999999999998533 3344555 445677777655 889999999999999998888888888
Q ss_pred HHHHhCCHHHHHHHHHHHHH
Q 022615 241 QEMEKYDWRAATRTIRNEQY 260 (294)
Q Consensus 241 ~~~~~~s~~~~~~~~~~~l~ 260 (294)
+..+...++..++.+. .++
T Consensus 394 ~~~~~~~~~~~~~~i~-~~~ 412 (415)
T 3rsc_A 394 HVRRAGGAARAADAVE-AYL 412 (415)
T ss_dssp HHHHSCHHHHHHHHHH-HHH
T ss_pred HHHhcCHHHHHHHHHH-HHh
Confidence 8777788888888776 444
No 44
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.27 E-value=2.5e-11 Score=106.72 Aligned_cols=171 Identities=14% Similarity=0.113 Sum_probs=118.6
Q ss_pred CceEEEeecccccccHHHHHHHH----HhCCCcEEE--EEcC--CccHHHHHh---hhcCCCeEEEecccchhHHHHHhc
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVM----DRLPEARIA--FIGD--GPYREELEK---MFTGMPAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~----~~~~~~~l~--i~G~--~~~~~~~~~---~~~~~~v~~~g~~~~~~~~~~~~~ 159 (294)
.++++.+++ ..|..+.+++++ ++.|+..+. +.|. +.....+++ ..-...+.+.|.++.++....|+.
T Consensus 441 ~v~Fg~fn~--~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~ 518 (631)
T 3q3e_A 441 VVNIGIAST--TMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHN 518 (631)
T ss_dssp EEEEEEEEC--STTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHT
T ss_pred eEEEEECCc--cccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhc
Confidence 355666665 467666666555 566876553 3563 233222222 222247899999999999999999
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccC---CCCccee-ecCCCCHHHHHHHHHHHhhChHHHHHH
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED---QDGKIGY-LFNPGDLDDCLSKLEPLLYNQELRETM 235 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~---~~~~~g~-~~~~~d~~~l~~~i~~ll~~~~~~~~~ 235 (294)
+|+++.|+.+. .|++.+|||+||+|||+........-+... .-|-.++ +.. |.+++.+....+..|++.+.++
T Consensus 519 aDIfLDpfpy~-GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~--d~eeYv~~Av~La~D~~~l~~L 595 (631)
T 3q3e_A 519 CDMMVNPFPFG-NTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIAN--TVDEYVERAVRLAENHQERLEL 595 (631)
T ss_dssp CSEEECCSSSC-CSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEES--SHHHHHHHHHHHHHCHHHHHHH
T ss_pred CcEEEeCCccc-CChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecC--CHHHHHHHHHHHhCCHHHHHHH
Confidence 99999998664 499999999999999997665544333000 0133443 444 8999999999999999999999
Q ss_pred HHHHHHHH-H--hCCHHHHHHHHHHHHHHHHHHHHHH
Q 022615 236 GQAARQEM-E--KYDWRAATRTIRNEQYNAAIWFWRK 269 (294)
Q Consensus 236 ~~~~~~~~-~--~~s~~~~~~~~~~~l~~~~~~~~~~ 269 (294)
+++.++.. . -|+ ...+++. .+|+++..++..
T Consensus 596 R~~Lr~~~~~spLFd--~~~~~~e-~~ye~~~~~w~~ 629 (631)
T 3q3e_A 596 RRYIIENNGLNTLFT--GDPRPMG-QVFLEKLNAFLK 629 (631)
T ss_dssp HHHHHHSCCHHHHTC--SCCTHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhhhCCCcc--hhHHHHH-HHHHHHHHHHHh
Confidence 99888774 2 244 5566776 788888776654
No 45
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.05 E-value=1.7e-09 Score=93.27 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=105.3
Q ss_pred CCceEEEeecccc--cccHHHHHHHHHhCCCcEEE-EEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEee
Q 022615 90 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIA-FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 166 (294)
Q Consensus 90 ~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~-i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~p 166 (294)
+..+++..|+... .+.+..++++++. .+++++ ++|.+...+.+.. ...|+.+.+++++. ++|..||++|.-
T Consensus 255 ~~~v~v~~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~g~~~~~~~~~~--~~~~v~~~~~~~~~---~~l~~~d~~v~~ 328 (424)
T 2iya_A 255 RPVLLIALGSAFTDHLDFYRTCLSAVDG-LDWHVVLSVGRFVDPADLGE--VPPNVEVHQWVPQL---DILTKASAFITH 328 (424)
T ss_dssp CCEEEEECCSSSCCCHHHHHHHHHHHTT-CSSEEEEECCTTSCGGGGCS--CCTTEEEESSCCHH---HHHTTCSEEEEC
T ss_pred CCEEEEEcCCCCcchHHHHHHHHHHHhc-CCcEEEEEECCcCChHHhcc--CCCCeEEecCCCHH---HHHhhCCEEEEC
Confidence 4567778888862 2334455666655 456774 5676654333322 13479999999654 689999998864
Q ss_pred cCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHHHHH
Q 022615 167 SESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAAR 240 (294)
Q Consensus 167 s~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~~ 240 (294)
+ ..++++|++++|+|+|+.+..+ ..+.+ ...+.|+.++.. +.+++.++|.++++|++.++++++.++
T Consensus 329 ~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 401 (424)
T 2iya_A 329 A----GMGSTMEALSNAVPMVAVPQIAEQTMNAERI---VELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQ 401 (424)
T ss_dssp C----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHTTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred C----chhHHHHHHHcCCCEEEecCccchHHHHHHH---HHCCCEEEcCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 2 3478999999999999986642 23344 345677777644 889999999999999987777777766
Q ss_pred HHHHhCCHHHHHHHHH
Q 022615 241 QEMEKYDWRAATRTIR 256 (294)
Q Consensus 241 ~~~~~~s~~~~~~~~~ 256 (294)
+.......+..++.+.
T Consensus 402 ~~~~~~~~~~~~~~i~ 417 (424)
T 2iya_A 402 EIREAGGARAAADILE 417 (424)
T ss_dssp HHHTSCHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHH
Confidence 6555555666665554
No 46
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.97 E-value=5.2e-08 Score=88.08 Aligned_cols=192 Identities=14% Similarity=0.151 Sum_probs=133.7
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHh-----ccCCcCceEEeeccccCCCC----CCCcc-------------------
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESF----HPRFR------------------- 76 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~-----~~~~~~~i~~i~~gvd~~~~----~~~~~------------------- 76 (294)
.+.+..+..++.|-.+|+-..+.+++. +...++++.-+-|||++..+ +|...
T Consensus 429 nMa~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~ 508 (824)
T 2gj4_A 429 NMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 508 (824)
T ss_dssp EHHHHHHHTCSCEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGG
T ss_pred cHHHHHHHhcCceeeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHH
Confidence 466778899999999999888888532 12235789999999998888 33110
Q ss_pred -------chHH---------H--HH--------hh-cCCCCCceEEEeecccccccHHHH-HHHHHhC------C-----
Q 022615 77 -------SSEM---------R--WR--------LS-NGEPDKPLIVHVGRLGVEKSLDFL-KRVMDRL------P----- 117 (294)
Q Consensus 77 -------~~~~---------~--~~--------~~-~~~~~~~~i~~~G~~~~~k~~~~l-~~~~~~~------~----- 117 (294)
.... . .+ .+ ...++.+.++++.|+..+|+.+++ +..+..+ |
T Consensus 509 ~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~ 588 (824)
T 2gj4_A 509 KLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVV 588 (824)
T ss_dssp GGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCC
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCC
Confidence 0111 0 00 11 124567889999999999999886 5554433 3
Q ss_pred CcEEEEEcCCc--cHH--H----HHhhhc--------CC--CeEEEecccchhHHHHHhcCCEEEeecC--CCCcchHHH
Q 022615 118 EARIAFIGDGP--YRE--E----LEKMFT--------GM--PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVL 177 (294)
Q Consensus 118 ~~~l~i~G~~~--~~~--~----~~~~~~--------~~--~v~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~ 177 (294)
+++++|.|.+. +.. . +..... .. +|.|+...+-.--..++..||+.+.||. .|++|++-+
T Consensus 589 p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~M 668 (824)
T 2gj4_A 589 PRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNM 668 (824)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHH
T ss_pred CEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHH
Confidence 46899999753 111 1 222222 11 4777777666777799999999999999 999999999
Q ss_pred HHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHH
Q 022615 178 EAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 218 (294)
Q Consensus 178 Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l 218 (294)
=+|..|.+.|++-.|...|+... ....+|++|... .+++
T Consensus 669 KamlNGaLtigtlDGanvEi~e~-vG~~Ngf~FG~~-~~ev 707 (824)
T 2gj4_A 669 KFMLNGALTIGTMDGANVEMAEE-AGEENFFIFGMR-VEDV 707 (824)
T ss_dssp HHHHTTCEEEECSCTTHHHHHHH-HCGGGSEECSCC-HHHH
T ss_pred HHHHcCceEEEEecCccchhhhc-cCCCCEEEeCCc-HHHH
Confidence 99999999999877766665511 145688988864 5665
No 47
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.96 E-value=1.9e-09 Score=92.67 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=94.6
Q ss_pred CCceEEEeecc-cccccHHHHHHHHHhCCCcEEEEE-cCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeec
Q 022615 90 DKPLIVHVGRL-GVEKSLDFLKRVMDRLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 90 ~~~~i~~~G~~-~~~k~~~~l~~~~~~~~~~~l~i~-G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
+..++++.|+. ...+..+.++++++.++ .+++++ |.+... ... ...|+.+.+++++. +++..||++|...
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~~--~~~--~~~~v~~~~~~~~~---~~l~~~d~~v~~~ 309 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAHG-RRVILSRGWADLV--LPD--DGADCFAIGEVNHQ---VLFGRVAAVIHHG 309 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHTT-CCEEECTTCTTCC--CSS--CGGGEEECSSCCHH---HHGGGSSEEEECC
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHCC-CeEEEEeCCCccc--ccC--CCCCEEEeCcCChH---HHHhhCCEEEeCC
Confidence 35678889998 47788888999998875 555554 755321 111 12378999999765 4579999999743
Q ss_pred CCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 022615 168 ESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQ 241 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~~~ 241 (294)
..++++||+++|+|+|+.+..+ ..+.+ .+.+.|+.++.. +.+++.++|.++ .|++.++++++.+++
T Consensus 310 ----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~~~ 381 (415)
T 1iir_A 310 ----GAGTTHVAARAGAPQILLPQMADQPYYAGRV---AELGVGVAHDGPIPTFDSLSAALATA-LTPETHARATAVAGT 381 (415)
T ss_dssp ----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHHHHHHHH
T ss_pred ----ChhHHHHHHHcCCCEEECCCCCccHHHHHHH---HHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 3478999999999999986643 33444 345677777643 789999999999 887766555544443
No 48
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.90 E-value=1e-07 Score=85.93 Aligned_cols=194 Identities=17% Similarity=0.149 Sum_probs=135.0
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHh-----ccCCcCceEEeeccccCCCC----CCC---------------------
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESF----HPR--------------------- 74 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~-----~~~~~~~i~~i~~gvd~~~~----~~~--------------------- 74 (294)
.+.+..+..++.|-.+|+-..+.+++. +..-+.++.-+.|||++..+ +|.
T Consensus 394 nMa~lai~~S~~VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l 473 (796)
T 2c4m_A 394 HMAWIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDEL 473 (796)
T ss_dssp EHHHHHHHHCSEEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGG
T ss_pred cHHHHHHHhcCceeeccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHH
Confidence 456777889999999999998888741 22335789999999999888 232
Q ss_pred ------ccch-------HH------------HHHhh-cCCCCCceEEEeecccccccHHH-HHHHHHhC-----------
Q 022615 75 ------FRSS-------EM------------RWRLS-NGEPDKPLIVHVGRLGVEKSLDF-LKRVMDRL----------- 116 (294)
Q Consensus 75 ------~~~~-------~~------------~~~~~-~~~~~~~~i~~~G~~~~~k~~~~-l~~~~~~~----------- 116 (294)
.... .. ..+.+ ...++.+.++++.|+..+|+.++ ++..+..+
T Consensus 474 ~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~ 553 (796)
T 2c4m_A 474 KKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDI 553 (796)
T ss_dssp GGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCC
Confidence 1110 00 11111 22456788999999999999998 66665433
Q ss_pred CCcEEEEEcCCc--cHHH------HHhhhc------C--C--CeEEEecccchhHHHHHhcCCEEEeecC--CCCcchHH
Q 022615 117 PEARIAFIGDGP--YREE------LEKMFT------G--M--PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVV 176 (294)
Q Consensus 117 ~~~~l~i~G~~~--~~~~------~~~~~~------~--~--~v~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~ 176 (294)
.+++++|.|.+. +... +..... . . +|.|+...+-.--..++..||+.+.||. .|++|++-
T Consensus 554 ~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~ 633 (796)
T 2c4m_A 554 PARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSN 633 (796)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHH
T ss_pred CCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHH
Confidence 258899999753 2211 222222 1 1 4777777666777799999999999999 99999999
Q ss_pred HHHHhcCCCEEeecCCCcccccccCCCCcceeecCC--CCHHHHH
Q 022615 177 LEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP--GDLDDCL 219 (294)
Q Consensus 177 ~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~--~d~~~l~ 219 (294)
+=+|..|.+.|.+-.|...|+... ....+|++|.. .+..++.
T Consensus 634 MKam~NGaL~iGtLDGanvEi~e~-vG~~NgF~FG~~~~ev~~l~ 677 (796)
T 2c4m_A 634 MKFMMNGALTLGTMDGANVEIVDS-VGEENAYIFGARVEELPALR 677 (796)
T ss_dssp HHHHHTTCEEEEESSTHHHHHHHH-HCGGGSEEESCCTTTHHHHH
T ss_pred HHHHHcCCeEEeccCCeEeehhhh-cCCCcEEEecCchhhHHHHH
Confidence 999999999998877766666521 12468888865 4444443
No 49
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.79 E-value=5.7e-08 Score=87.49 Aligned_cols=231 Identities=12% Similarity=0.107 Sum_probs=152.7
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHh-----ccCCcCceEEeeccccCCCC----CCC----------------------
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESF----HPR---------------------- 74 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~-----~~~~~~~i~~i~~gvd~~~~----~~~---------------------- 74 (294)
+.+..+..++.|-.+|+-..+.+++. +..-+.++.-+.|||++..+ +|.
T Consensus 406 Ma~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~ 485 (796)
T 1l5w_A 406 MANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLIN 485 (796)
T ss_dssp HHHHHHHHSSEEEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGG
T ss_pred HHHHHHHhcCccccccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHH
Confidence 56677889999999999998888641 22335689999999987665 221
Q ss_pred ----ccc----hH---H------------HHHhhc-CCCCCceEEEeecccccccHHH-HHHHHHhC-----------CC
Q 022615 75 ----FRS----SE---M------------RWRLSN-GEPDKPLIVHVGRLGVEKSLDF-LKRVMDRL-----------PE 118 (294)
Q Consensus 75 ----~~~----~~---~------------~~~~~~-~~~~~~~i~~~G~~~~~k~~~~-l~~~~~~~-----------~~ 118 (294)
... .+ . ..+.+. ..++.+.++++.|+..+|+.++ ++..+..+ .+
T Consensus 486 l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p 565 (796)
T 1l5w_A 486 LEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVP 565 (796)
T ss_dssp GGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCC
Confidence 111 00 0 111121 2456788999999999999998 67655433 25
Q ss_pred cEEEEEcCCc--cHHH------HHhhhc---C---C----CeEEEecccchhHHHHHhcCCEEEeecC--CCCcchHHHH
Q 022615 119 ARIAFIGDGP--YREE------LEKMFT---G---M----PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLE 178 (294)
Q Consensus 119 ~~l~i~G~~~--~~~~------~~~~~~---~---~----~v~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~E 178 (294)
++++|.|.+. +... +..... + . +|.|+...+-.--..++..||+.+.||. .|++|++-+=
T Consensus 566 ~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MK 645 (796)
T 1l5w_A 566 RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMK 645 (796)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHH
T ss_pred eEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHH
Confidence 8899999753 2211 222222 1 1 3777766666777799999999999999 9999999999
Q ss_pred HHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHH------h-hChHHHHHHHHHHHHHHHhCCHHHH
Q 022615 179 AMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL------L-YNQELRETMGQAARQEMEKYDWRAA 251 (294)
Q Consensus 179 a~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~l------l-~~~~~~~~~~~~~~~~~~~~s~~~~ 251 (294)
+|..|.+.|.+-.|...|+... ....+|++|.. +.+++.+.-... + .++ .++++...+.. ..|+|..-
T Consensus 646 am~NGaL~iGtLDGanvEi~e~-vG~~NgF~FG~-~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~~--g~fs~~~~ 720 (796)
T 1l5w_A 646 LALNGALTVGTLDGANVEIAEK-VGEENIFIFGH-TVEQVKAILAKGYDPVKWRKKDK-VLDAVLKELES--GKYSDGDK 720 (796)
T ss_dssp HHHTTCEEEECSCTTHHHHHHH-HCGGGSEECSC-CHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHHH--TTTTTTCT
T ss_pred HHHcCCeeecCcCCeeeehhhc-cCCCcEEEecC-CHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHHc--CCCCCCcH
Confidence 9999999998877877776522 12469999986 777776432221 1 233 23333332222 35888763
Q ss_pred HHHHHHHHHHHH
Q 022615 252 TRTIRNEQYNAA 263 (294)
Q Consensus 252 ~~~~~~~l~~~~ 263 (294)
..+. .+|+.+
T Consensus 721 -~~y~-~Ly~~L 730 (796)
T 1l5w_A 721 -HAFD-QMLHSI 730 (796)
T ss_dssp -TTTH-HHHHHT
T ss_pred -HHHH-HHHHHH
Confidence 5555 666665
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.74 E-value=8.3e-07 Score=81.24 Aligned_cols=179 Identities=10% Similarity=0.093 Sum_probs=127.1
Q ss_pred CCCCceEEEeeccccc--ccHHHHHHHHHhCCCcEEEEEcCCc-cHHHHHhhhcC-----CCeEEEecccchhHHHHHhc
Q 022615 88 EPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAFIGDGP-YREELEKMFTG-----MPAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 88 ~~~~~~i~~~G~~~~~--k~~~~l~~~~~~~~~~~l~i~G~~~-~~~~~~~~~~~-----~~v~~~g~~~~~~~~~~~~~ 159 (294)
+++.++++++.++.+. .-+....+++++.|+-+|++..... ....+.+.... .++.|.+..+.++....++.
T Consensus 520 p~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~ 599 (723)
T 4gyw_A 520 PEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQL 599 (723)
T ss_dssp CTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGG
T ss_pred CCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCC
Confidence 4455666666655332 2355667788889999998876543 33444444432 25899999999999999999
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcccccccC---CCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHH
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED---QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 236 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~---~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~ 236 (294)
+|++|-+.-+ +.+++.+||+.+|+|||+-....+..-+... .-|-..++.. |.++..+....+..|++.+.+++
T Consensus 600 ~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~--~~~~Y~~~a~~la~d~~~l~~lr 676 (723)
T 4gyw_A 600 ADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAK--NRQEYEDIAVKLGTDLEYLKKVR 676 (723)
T ss_dssp CSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCS--SHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccC--CHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999987554 4578899999999999986543332221000 0022233444 88999999999999999999998
Q ss_pred HHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHh
Q 022615 237 QAARQEME---KYDWRAATRTIRNEQYNAAIWFWRKK 270 (294)
Q Consensus 237 ~~~~~~~~---~~s~~~~~~~~~~~l~~~~~~~~~~~ 270 (294)
+..++... -|+-...++.+. ..|+++-.++..-
T Consensus 677 ~~l~~~~~~s~l~d~~~~~~~le-~a~~~~w~r~~~G 712 (723)
T 4gyw_A 677 GKVWKQRISSPLFNTKQYTMELE-RLYLQMWEHYAAG 712 (723)
T ss_dssp HHHHHHHHHSSTTCHHHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcCcCHHHHHHHHH-HHHHHHHHHHHcC
Confidence 88877753 289999999998 8999986665443
No 51
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.70 E-value=3.2e-08 Score=84.97 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=93.6
Q ss_pred CCceEEEeeccc---ccccHHHHHHHHHhCCCcEEEEE-cCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe
Q 022615 90 DKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 90 ~~~~i~~~G~~~---~~k~~~~l~~~~~~~~~~~l~i~-G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
+..+++..|+.. ..+....++++++.++ .++++. |.+... .. ....|+.+.+++++ .++|..||++|.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~~--~~--~~~~~v~~~~~~~~---~~ll~~~d~~v~ 308 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQG-RRVILSRGWTELV--LP--DDRDDCFAIDEVNF---QALFRRVAAVIH 308 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHTT-CCEEEECTTTTCC--CS--CCCTTEEEESSCCH---HHHGGGSSEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHCC-CeEEEEeCCcccc--cc--CCCCCEEEeccCCh---HHHhccCCEEEe
Confidence 356778888874 4666788888888774 566654 765321 11 11347999999964 557899999997
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecCC--CCHHHHHHHHHHHhhChHHHHHHHHHH
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAA 239 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~~--~d~~~l~~~i~~ll~~~~~~~~~~~~~ 239 (294)
- +..+++.|++++|+|+|+.+..+ ..+.+ .+.+.|..++. .+.+++.++|.++ .|++.++++++.+
T Consensus 309 ~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~ 380 (416)
T 1rrv_A 309 H----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRV---AALGIGVAHDGPTPTFESLSAALTTV-LAPETRARAEAVA 380 (416)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHH---HHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHHHHHHT
T ss_pred c----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHH---HHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHHHHHHH
Confidence 3 33579999999999999976532 22334 34566766653 4789999999999 8877665555444
Q ss_pred H
Q 022615 240 R 240 (294)
Q Consensus 240 ~ 240 (294)
+
T Consensus 381 ~ 381 (416)
T 1rrv_A 381 G 381 (416)
T ss_dssp T
T ss_pred H
Confidence 3
No 52
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.68 E-value=6.7e-08 Score=82.68 Aligned_cols=152 Identities=12% Similarity=0.059 Sum_probs=100.1
Q ss_pred CCCceEEEeeccc-ccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeec
Q 022615 89 PDKPLIVHVGRLG-VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 89 ~~~~~i~~~G~~~-~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
+...+++..|+.. ..+.+..++++++.. ++++++.+.....+ ......|+.+.+++++ .+++..||++|.-+
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~-~~~vv~~~g~~~~~---~~~~~~~v~~~~~~~~---~~ll~~~d~~v~~g 292 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ-GRRVVLSSGWAGLG---RIDEGDDCLVVGEVNH---QVLFGRVAAVVHHG 292 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT-TCCEEEECTTTTCC---CSSCCTTEEEESSCCH---HHHGGGSSEEEECC
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC-CCEEEEEeCCcccc---cccCCCCEEEecCCCH---HHHHhhCcEEEECC
Confidence 3456788889887 677788889998887 46666654322111 1112458999999864 56788999999654
Q ss_pred CCCCcchHHHHHHhcCCCEEeecCCCc----ccccccCCCCcceeecCCC--CHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 022615 168 ESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQ 241 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~~~~~~----~e~~~~~~~~~~g~~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~~~ 241 (294)
..+++.|++++|+|+|+....+- .+.+ ...+.|..+... +.+++.+++.++++ ++.++++++.+..
T Consensus 293 ----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~---~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~ 364 (404)
T 3h4t_A 293 ----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRV---ADLGVGVAHDGPTPTVESLSAALATALT-PGIRARAAAVAGT 364 (404)
T ss_dssp ----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHHTT
T ss_pred ----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHH---HHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 23788999999999998765432 2223 334566666533 78999999999998 7665555544443
Q ss_pred HHHhCCHHHHHHHHH
Q 022615 242 EMEKYDWRAATRTIR 256 (294)
Q Consensus 242 ~~~~~s~~~~~~~~~ 256 (294)
... ...+..++.+.
T Consensus 365 ~~~-~~~~~~~~~i~ 378 (404)
T 3h4t_A 365 IRT-DGTTVAAKLLL 378 (404)
T ss_dssp CCC-CHHHHHHHHHH
T ss_pred Hhh-hHHHHHHHHHH
Confidence 333 34444444443
No 53
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.57 E-value=9.4e-08 Score=81.50 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=93.4
Q ss_pred CCceEEEeecccccc----cHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe
Q 022615 90 DKPLIVHVGRLGVEK----SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k----~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
...+++..|++...+ -+..+++++... +..+++.+.+........ ...|+.+.+++|+ .++|..+|++|.
T Consensus 237 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~--~~~~v~~~~~~p~---~~lL~~~~~~v~ 310 (400)
T 4amg_A 237 RRRIAVTLGSIDALSGGIAKLAPLFSEVADV-DAEFVLTLGGGDLALLGE--LPANVRVVEWIPL---GALLETCDAIIH 310 (400)
T ss_dssp CCEEEECCCSCC--CCSSSTTHHHHHHGGGS-SSEEEEECCTTCCCCCCC--CCTTEEEECCCCH---HHHHTTCSEEEE
T ss_pred CcEEEEeCCcccccCccHHHHHHHHHHhhcc-CceEEEEecCcccccccc--CCCCEEEEeecCH---HHHhhhhhheec
Confidence 345667778775433 244555555554 455555543322111111 1247899999864 457889999874
Q ss_pred ecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ 241 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~ 241 (294)
- +..+++.|++++|+|+|+.+..+ ..+.+ .+.+.|+.++ +.+..+++|.++++|++.+++.++-+.+
T Consensus 311 h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v---~~~G~g~~l~--~~~~~~~al~~lL~d~~~r~~a~~l~~~ 381 (400)
T 4amg_A 311 H----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVL---TGLGIGFDAE--AGSLGAEQCRRLLDDAGLREAALRVRQE 381 (400)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCC---CHHHHHHH---HHHTSEEECC--TTTCSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred c----CCccHHHHHHHhCCCEEEecCcccHHHHHHHH---HHCCCEEEcC--CCCchHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3 34578999999999999865543 23344 3345566665 3445678999999999877666655555
Q ss_pred HHHhCCHHHHHHHHH
Q 022615 242 EMEKYDWRAATRTIR 256 (294)
Q Consensus 242 ~~~~~s~~~~~~~~~ 256 (294)
....-+....+..+.
T Consensus 382 ~~~~~~~~~~a~~le 396 (400)
T 4amg_A 382 MSEMPPPAETAAXLV 396 (400)
T ss_dssp HHTSCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH
Confidence 544556666666654
No 54
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.29 E-value=2.1e-05 Score=72.32 Aligned_cols=218 Identities=13% Similarity=0.028 Sum_probs=119.7
Q ss_pred HHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCcc---chHHHHHhhcCCCCCceEEEeecccccc--
Q 022615 30 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR---SSEMRWRLSNGEPDKPLIVHVGRLGVEK-- 104 (294)
Q Consensus 30 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~G~~~~~k-- 104 (294)
...+.|.+++.|+.+.+.+.+.++.+++++...+.+=....+..... ....+... ...+++++|+|+-+++...
T Consensus 475 ~~~~~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~~~~~~~~-~~~~~kk~ILyaPT~r~~~~~ 553 (729)
T 3l7i_A 475 ETSRWDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLDEIRTHL-NLPSDKKVIMYAPTWRDDEFV 553 (729)
T ss_dssp HHTTCSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHSTTCHHHHHHHHHHT-TCCSSCEEEEECCCCCGGGCC
T ss_pred hhccCCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCchHHHhcccchHHHHHHHHHHh-CCCCCCeEEEEeeeeeCCccc
Confidence 34678999999999999999998876566655543321112211111 11122222 2356788999999876542
Q ss_pred -----------cHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhc--C-CCeEEEecccchhHHHHHhcCCEEEeecCCC
Q 022615 105 -----------SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT--G-MPAVFTGMLLGEELSQAYASGDVFVMPSESE 170 (294)
Q Consensus 105 -----------~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~--~-~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e 170 (294)
+++.+.+.+. ++..+++-.. +. +..... . .+. +...-+..++.++|..||++|.-
T Consensus 554 ~~~~~~~~~~~~~~~l~~~l~--~~~~li~r~H-p~---~~~~~~~~~~~~~-~~~~~~~~di~~ll~~aD~lITD---- 622 (729)
T 3l7i_A 554 SKGKYLFELKIDLDNLYKELG--DDYVILLRMH-YL---ISNALDLSGYENF-AIDVSNYNDVSELFLISDCLITD---- 622 (729)
T ss_dssp GGGSSCCCCTTCHHHHHHHHT--TTEEEEECCC-HH---HHTTCCCTTCTTT-EEECTTCSCHHHHHHTCSEEEES----
T ss_pred cccccccchhhHHHHHHHHcC--CCeEEEEecC-cc---hhccccccccCCc-EEeCCCCcCHHHHHHHhCEEEee----
Confidence 2344444443 3565555443 21 111111 1 111 12222346899999999999854
Q ss_pred CcchHHHHHHhcCCCEEeecCCCcccccc-------cCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Q 022615 171 TLGLVVLEAMSSGIPVVGVRAGGIPDIIP-------EDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 243 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~-------~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 243 (294)
++..++|++..++|||..... ..++.. +......|-++. +.+++.++|.......+.+.+..+.-.+..
T Consensus 623 -ySSv~fD~~~l~kPiif~~~D-~~~Y~~~~rg~y~d~~~~~pg~~~~--~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~ 698 (729)
T 3l7i_A 623 -YSSVMFDYGILKRPQFFFAYD-IDKYDKGLRGFYMNYMEDLPGPIYT--EPYGLAKELKNLDKVQQQYQEKIDAFYDRF 698 (729)
T ss_dssp -SCTHHHHHGGGCCCEEEECTT-TTTTTSSCCSBSSCTTSSSSSCEES--SHHHHHHHHTTHHHHHHHTHHHHHHHHHHH
T ss_pred -chHHHHhHHhhCCCEEEecCC-HHHHhhccCCcccChhHhCCCCeEC--CHHHHHHHHhhhhccchhHHHHHHHHHHHh
Confidence 377899999999999976221 122210 001223344444 889999999887654433333222222222
Q ss_pred HhCCHHHHHHHHHHHHHHHH
Q 022615 244 EKYDWRAATRTIRNEQYNAA 263 (294)
Q Consensus 244 ~~~s~~~~~~~~~~~l~~~~ 263 (294)
-.|.--..++++.+.+++..
T Consensus 699 ~~~~dg~as~ri~~~i~~~~ 718 (729)
T 3l7i_A 699 CSVDNGKASQYIGDLIHKDI 718 (729)
T ss_dssp STTCCSCHHHHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHHhcC
Confidence 22332345555555555443
No 55
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.22 E-value=6.6e-06 Score=66.28 Aligned_cols=92 Identities=8% Similarity=0.024 Sum_probs=67.1
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCc-cHHHHHhhhc-CCCeEEEecccchhHHHHHhcCCEEEeecCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSES 169 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~-~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~ 169 (294)
.+++.+|..+...-...+++++..... -.+++|.+. ..+.+++... ..++.+.+++ +++.++|+.||++|.+.
T Consensus 159 ~ILv~~GG~d~~~l~~~vl~~L~~~~~-i~vv~G~~~~~~~~l~~~~~~~~~v~v~~~~--~~m~~~m~~aDlvI~~g-- 233 (282)
T 3hbm_A 159 DFFICMGGTDIKNLSLQIASELPKTKI-ISIATSSSNPNLKKLQKFAKLHNNIRLFIDH--ENIAKLMNESNKLIISA-- 233 (282)
T ss_dssp EEEEECCSCCTTCHHHHHHHHSCTTSC-EEEEECTTCTTHHHHHHHHHTCSSEEEEESC--SCHHHHHHTEEEEEEES--
T ss_pred eEEEEECCCchhhHHHHHHHHhhcCCC-EEEEECCCchHHHHHHHHHhhCCCEEEEeCH--HHHHHHHHHCCEEEECC--
Confidence 466788877666555666676655443 335567653 4566666544 3479999998 99999999999999853
Q ss_pred CCcchHHHHHHhcCCCEEeecC
Q 022615 170 ETLGLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~~ 191 (294)
|+++.|++++|+|.|.-+.
T Consensus 234 ---G~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 234 ---SSLVNEALLLKANFKAICY 252 (282)
T ss_dssp ---SHHHHHHHHTTCCEEEECC
T ss_pred ---cHHHHHHHHcCCCEEEEeC
Confidence 5799999999999987643
No 56
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.20 E-value=3.2e-05 Score=66.76 Aligned_cols=199 Identities=12% Similarity=0.026 Sum_probs=108.1
Q ss_pred HHHhCCeEEecchhhHHH--HHHhccCCcCceEEeeccc-cCCCCCCCccchHHHHHhhcCCCCCceEEEeeccccc--c
Q 022615 30 LHRAADLTLVPSVAIGKD--LEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE--K 104 (294)
Q Consensus 30 ~~~~ad~ii~~s~~~~~~--~~~~~~~~~~~i~~i~~gv-d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~--k 104 (294)
....++.+++.|-...+. +....... .++..|..-. .... .......+...-.....++..+++..|..... .
T Consensus 212 ~~~~~~~vl~ns~~eLE~~~~~~~~~~~-~~v~~vGPl~~~~~~-~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~ 289 (454)
T 3hbf_A 212 ELPRANAVAINSFATIHPLIENELNSKF-KLLLNVGPFNLTTPQ-RKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPH 289 (454)
T ss_dssp HGGGSSCEEESSCGGGCHHHHHHHHTTS-SCEEECCCHHHHSCC-SCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHH
T ss_pred hhccCCEEEECChhHhCHHHHHHHHhcC-CCEEEECCccccccc-ccccchHHHHHHHhcCCCCceEEEecCCCCcCCHH
Confidence 356799999988665432 11111111 2455443211 1110 00011111122222223445667777877532 2
Q ss_pred cHHHHHHHHHhCCCcEEEEE-cCCccHHH----HHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHH
Q 022615 105 SLDFLKRVMDRLPEARIAFI-GDGPYREE----LEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 179 (294)
Q Consensus 105 ~~~~l~~~~~~~~~~~l~i~-G~~~~~~~----~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea 179 (294)
.+..++++++.. +.++++. |.+. .+. +.+.. ..|+.+.+++|+ ..++..+++.++-+. +.-++++|+
T Consensus 290 ~~~el~~~l~~~-~~~flw~~~~~~-~~~lp~~~~~~~-~~~~~vv~w~Pq---~~vL~h~~v~~fvtH--~G~~S~~Ea 361 (454)
T 3hbf_A 290 ELTALAESLEEC-GFPFIWSFRGDP-KEKLPKGFLERT-KTKGKIVAWAPQ---VEILKHSSVGVFLTH--SGWNSVLEC 361 (454)
T ss_dssp HHHHHHHHHHHH-CCCEEEECCSCH-HHHSCTTHHHHT-TTTEEEESSCCH---HHHHHSTTEEEEEEC--CCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCeEEEEeCCcc-hhcCCHhHHhhc-CCceEEEeeCCH---HHHHhhcCcCeEEec--CCcchHHHH
Confidence 244555566554 4555544 4322 111 11111 247888899976 478899997665554 345789999
Q ss_pred HhcCCCEEeecCCC----cccccccCCC-CcceeecCC--CCHHHHHHHHHHHhhChHHHHHHHHHHHHH
Q 022615 180 MSSGIPVVGVRAGG----IPDIIPEDQD-GKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAARQE 242 (294)
Q Consensus 180 ~a~G~pvI~~~~~~----~~e~~~~~~~-~~~g~~~~~--~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 242 (294)
+++|+|+|+.+..+ ....+ .+ .+.|+.+.. -+.+++.++|.+++++++ .+++++++++.
T Consensus 362 l~~GvP~i~~P~~~DQ~~Na~~v---~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~~-~~~~r~~a~~l 427 (454)
T 3hbf_A 362 IVGGVPMISRPFFGDQGLNTILT---ESVLEIGVGVDNGVLTKESIKKALELTMSSEK-GGIMRQKIVKL 427 (454)
T ss_dssp HHHTCCEEECCCSTTHHHHHHHH---HTTSCSEEECGGGSCCHHHHHHHHHHHHSSHH-HHHHHHHHHHH
T ss_pred HHcCCCEecCcccccHHHHHHHH---HHhhCeeEEecCCCCCHHHHHHHHHHHHCCCh-HHHHHHHHHHH
Confidence 99999999976532 12223 33 266666653 468999999999998742 34455555443
No 57
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=98.08 E-value=6.3e-05 Score=65.71 Aligned_cols=144 Identities=10% Similarity=0.075 Sum_probs=90.0
Q ss_pred CCceEEEeecccc--cccHHHHHHHHHhCCCcEEEEE-cCCc-------cHHHHHhhhcCCCeEEEecccchhHHHHHhc
Q 022615 90 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-GDGP-------YREELEKMFTGMPAVFTGMLLGEELSQAYAS 159 (294)
Q Consensus 90 ~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i~-G~~~-------~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 159 (294)
+..+++..|.... ...+..++++++..+ .++++. |... ..+.+.+.. ..|+.+.+++|+. ++|+.
T Consensus 295 ~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~v~~~~pq~---~~L~h 369 (482)
T 2pq6_A 295 GSVVYVNFGSTTVMTPEQLLEFAWGLANCK-KSFLWIIRPDLVIGGSVIFSSEFTNEI-ADRGLIASWCPQD---KVLNH 369 (482)
T ss_dssp TCEEEEECCSSSCCCHHHHHHHHHHHHHTT-CEEEEECCGGGSTTTGGGSCHHHHHHH-TTTEEEESCCCHH---HHHTS
T ss_pred CceEEEecCCcccCCHHHHHHHHHHHHhcC-CcEEEEEcCCccccccccCcHhHHHhc-CCCEEEEeecCHH---HHhcC
Confidence 4456777787642 222555666666654 566554 4221 112332222 3478899999765 48888
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCcc----cccccCCCCcceeecC-CCCHHHHHHHHHHHhhChHHHHH
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP----DIIPEDQDGKIGYLFN-PGDLDDCLSKLEPLLYNQELRET 234 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~----e~~~~~~~~~~g~~~~-~~d~~~l~~~i~~ll~~~~~~~~ 234 (294)
+++.++-+. +..++++|++++|+|+|+.+..+-. ..+. +..+.|+.+. .-+.+++.++|.+++.|++ .++
T Consensus 370 ~~~~~~vth--~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~--~~~G~g~~l~~~~~~~~l~~~i~~ll~~~~-~~~ 444 (482)
T 2pq6_A 370 PSIGGFLTH--CGWNSTTESICAGVPMLCWPFFADQPTDCRFIC--NEWEIGMEIDTNVKREELAKLINEVIAGDK-GKK 444 (482)
T ss_dssp TTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH--HTSCCEEECCSSCCHHHHHHHHHHHHTSHH-HHH
T ss_pred CCCCEEEec--CCcchHHHHHHcCCCEEecCcccchHHHHHHHH--HHhCEEEEECCCCCHHHHHHHHHHHHcCCc-HHH
Confidence 887544443 4467899999999999998664221 1120 1345666664 2378999999999999876 356
Q ss_pred HHHHHHHHH
Q 022615 235 MGQAARQEM 243 (294)
Q Consensus 235 ~~~~~~~~~ 243 (294)
+++++++..
T Consensus 445 ~r~~a~~l~ 453 (482)
T 2pq6_A 445 MKQKAMELK 453 (482)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 58
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.03 E-value=9.1e-05 Score=64.20 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=85.1
Q ss_pred CCCceEEEeeccccc--ccHHHHHHHHHhCCCcEEEE-EcCCcc---HHHHHhhhcCCCeEEEecccchhHHHHHhc--C
Q 022615 89 PDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAF-IGDGPY---REELEKMFTGMPAVFTGMLLGEELSQAYAS--G 160 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~--k~~~~l~~~~~~~~~~~l~i-~G~~~~---~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--a 160 (294)
++..+++..|..... ..+..++++++.. +.++++ +|.... .+.+.+.. ..++.+.+++++. ++|.. +
T Consensus 270 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~-~~~~lw~~~~~~~~~l~~~~~~~~-~~~~~v~~w~pq~---~vL~h~~~ 344 (456)
T 2c1x_A 270 PTSVVYISFGTVTTPPPAEVVALSEALEAS-RVPFIWSLRDKARVHLPEGFLEKT-RGYGMVVPWAPQA---EVLAHEAV 344 (456)
T ss_dssp TTCEEEEECCSSCCCCHHHHHHHHHHHHHH-TCCEEEECCGGGGGGSCTTHHHHH-TTTEEEESCCCHH---HHHTSTTE
T ss_pred CcceEEEecCccccCCHHHHHHHHHHHHhc-CCeEEEEECCcchhhCCHHHHhhc-CCceEEecCCCHH---HHhcCCcC
Confidence 455667778877532 2244455555553 355544 453321 11111111 3478888999763 57884 4
Q ss_pred CEEEeecCCCCcchHHHHHHhcCCCEEeecCCC----cccccccCCCC-cceeecCC--CCHHHHHHHHHHHhhChHHHH
Q 022615 161 DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDG-KIGYLFNP--GDLDDCLSKLEPLLYNQELRE 233 (294)
Q Consensus 161 d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~-~~g~~~~~--~d~~~l~~~i~~ll~~~~~~~ 233 (294)
|++|. -+..++++|++++|+|+|+.+..+ ....+ .+. +.|+.+.. -+.+++.++|.+++.+++ .+
T Consensus 345 ~~fvt----h~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l---~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~-~~ 416 (456)
T 2c1x_A 345 GAFVT----HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMV---EDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK-GK 416 (456)
T ss_dssp EEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHTSCCEEECGGGSCCHHHHHHHHHHHHHSHH-HH
T ss_pred CEEEe----cCCcchHHHHHHhCceEEecCChhhHHHHHHHH---HHHhCeEEEecCCCcCHHHHHHHHHHHHCCCc-HH
Confidence 55553 234678999999999999976532 12223 233 56666543 368999999999999875 45
Q ss_pred HHHHHHHHHH
Q 022615 234 TMGQAARQEM 243 (294)
Q Consensus 234 ~~~~~~~~~~ 243 (294)
++++++++..
T Consensus 417 ~~r~~a~~l~ 426 (456)
T 2c1x_A 417 KLRENLRALR 426 (456)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566655543
No 59
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.77 E-value=0.00082 Score=58.58 Aligned_cols=131 Identities=14% Similarity=0.016 Sum_probs=79.5
Q ss_pred CCCceEEEeecccc--cccHHHHHHHHHhCCCcEEEEE-cCCc--------------c-----HHHHHhhhcCCCeEEEe
Q 022615 89 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-GDGP--------------Y-----REELEKMFTGMPAVFTG 146 (294)
Q Consensus 89 ~~~~~i~~~G~~~~--~k~~~~l~~~~~~~~~~~l~i~-G~~~--------------~-----~~~~~~~~~~~~v~~~g 146 (294)
++..+.+.+|.... ...+..++++++..+ .+++++ |.+. . .+.+.+..+..++.+.+
T Consensus 267 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~-~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~ 345 (480)
T 2vch_A 267 LGSVLYVSFGSGGTLTCEQLNELALGLADSE-QRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPF 345 (480)
T ss_dssp TTCEEEEECTTTCCCCHHHHHHHHHHHHHTT-CEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEES
T ss_pred CCceEEEecccccCCCHHHHHHHHHHHHhcC-CcEEEEECCccccccccccccccccchhhhcCHHHHHHhCCCeEEEeC
Confidence 34567777888743 233455666666654 555544 4321 0 01111122222355566
Q ss_pred cccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCc----ccc-cccCCCCcceeecCC-----CCHH
Q 022615 147 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDI-IPEDQDGKIGYLFNP-----GDLD 216 (294)
Q Consensus 147 ~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~----~e~-~~~~~~~~~g~~~~~-----~d~~ 216 (294)
++|+. ++|+.+++.++-+. +.-++++|++++|+|+|+.+..+- ... + +..+.|+.+.. -+.+
T Consensus 346 w~Pq~---~vL~h~~v~~fvtH--gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~---~~~G~g~~l~~~~~~~~~~~ 417 (480)
T 2vch_A 346 WAPQA---QVLAHPSTGGFLTH--CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLS---EDIRAALRPRAGDDGLVRRE 417 (480)
T ss_dssp CCCHH---HHHHSTTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH---HTTCCEECCCCCTTSCCCHH
T ss_pred ccCHH---HHhCCCCcCeEEec--ccchhHHHHHHcCCCEEeccccccchHHHHHHH---HHhCeEEEeecccCCccCHH
Confidence 98654 78999997555543 445789999999999999765321 112 2 23456665553 3789
Q ss_pred HHHHHHHHHhhC
Q 022615 217 DCLSKLEPLLYN 228 (294)
Q Consensus 217 ~l~~~i~~ll~~ 228 (294)
++.++|.+++.+
T Consensus 418 ~l~~av~~vl~~ 429 (480)
T 2vch_A 418 EVARVVKGLMEG 429 (480)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhcC
Confidence 999999999974
No 60
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.73 E-value=0.0041 Score=53.94 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=77.9
Q ss_pred CCCceEEEeeccc-cc--ccHHHHHHHHHhCCCcEEEEE-cCC--ccHHHHHhhhc-CCCeEEEecccchhHHHHHhc--
Q 022615 89 PDKPLIVHVGRLG-VE--KSLDFLKRVMDRLPEARIAFI-GDG--PYREELEKMFT-GMPAVFTGMLLGEELSQAYAS-- 159 (294)
Q Consensus 89 ~~~~~i~~~G~~~-~~--k~~~~l~~~~~~~~~~~l~i~-G~~--~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~-- 159 (294)
++..+++..|... .. ..+..++++++.. +.+++++ |.+ ...+.+.+... ..++.+.+++++. .+|..
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~v~~w~pq~---~vL~h~~ 350 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHS-GVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQV---EVLAHKA 350 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHHH-TCEEEEECCCCGGGSCTTHHHHHHHHCSEEEESSCCHH---HHHHSTT
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHHHhC-CCcEEEEECCCcccCChhHHHhhccCCCEEEEccCCHH---HHhCCCc
Confidence 4456777788776 22 2245566666654 4565554 543 11122222220 2377888899654 46764
Q ss_pred CCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCc----ccc-cccCCCCcceeec-C-------CCCHHHHHHHHHHHh
Q 022615 160 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDI-IPEDQDGKIGYLF-N-------PGDLDDCLSKLEPLL 226 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~----~e~-~~~~~~~~~g~~~-~-------~~d~~~l~~~i~~ll 226 (294)
+|++|. . +..++++|++++|+|+|+.+..+- ... + +..+.|+.+ . .-+.+++.++|.+++
T Consensus 351 ~~~fvt--h--~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv---~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll 423 (463)
T 2acv_A 351 IGGFVS--H--CGWNSILESMWFGVPILTWPIYAEQQLNAFRLV---KEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM 423 (463)
T ss_dssp EEEEEE--C--CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHH---HTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHT
T ss_pred cCeEEe--c--CCchhHHHHHHcCCCeeeccchhhhHHHHHHHH---HHcCeEEEEecccCCCCccccHHHHHHHHHHHH
Confidence 555553 2 346789999999999999765321 122 2 345677766 2 237899999999999
Q ss_pred h
Q 022615 227 Y 227 (294)
Q Consensus 227 ~ 227 (294)
+
T Consensus 424 ~ 424 (463)
T 2acv_A 424 D 424 (463)
T ss_dssp C
T ss_pred h
Confidence 6
No 61
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.63 E-value=0.0013 Score=54.59 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=65.9
Q ss_pred CCCceEEEeec-ccccccH--HHHHHHHHhC--CCcEEEEEcCCccHHHHHhhhcCC------Ce-EEEecccchhHHHH
Q 022615 89 PDKPLIVHVGR-LGVEKSL--DFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM------PA-VFTGMLLGEELSQA 156 (294)
Q Consensus 89 ~~~~~i~~~G~-~~~~k~~--~~l~~~~~~~--~~~~l~i~G~~~~~~~~~~~~~~~------~v-~~~g~~~~~~~~~~ 156 (294)
++..+++..|. ..+.|.+ +.+.++++.+ .+++++++|...+.+..++..... ++ .+.|..+-.++..+
T Consensus 179 ~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~al 258 (348)
T 1psw_A 179 ERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVIL 258 (348)
T ss_dssp SSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHH
T ss_pred CCcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHH
Confidence 34566777787 5455654 3666665544 278999998766665555554332 33 56677777999999
Q ss_pred HhcCCEEEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 157 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 157 ~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
++.||++|.... |. +-.|.++|+|+|+-
T Consensus 259 i~~a~l~I~~Ds----g~-~HlAaa~g~P~v~l 286 (348)
T 1psw_A 259 IAACKAIVTNDS----GL-MHVAAALNRPLVAL 286 (348)
T ss_dssp HHTSSEEEEESS----HH-HHHHHHTTCCEEEE
T ss_pred HHhCCEEEecCC----HH-HHHHHHcCCCEEEE
Confidence 999999998751 33 33499999999874
No 62
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=97.20 E-value=0.01 Score=48.79 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=79.6
Q ss_pred CceEEEeecccccccH--HHHHHHHHhC--CCcEEEEE-cCCccHHHHHhhhcC-CCeEEEecccchhHHHHHhcCCEEE
Q 022615 91 KPLIVHVGRLGVEKSL--DFLKRVMDRL--PEARIAFI-GDGPYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFV 164 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~--~~l~~~~~~~--~~~~l~i~-G~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~l 164 (294)
..+++..|.-...|.+ +.+.++++.+ .+.++++. |...+.+..++.... .++.+.|..+-.++..+++.||++|
T Consensus 179 ~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l~I 258 (326)
T 2gt1_A 179 EYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKFVV 258 (326)
T ss_dssp SEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSEEE
T ss_pred CEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCEEE
Confidence 4566777766666654 4777777766 36788886 533344444444432 2466778777799999999999999
Q ss_pred eecCCCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcce-----eecCCCCHHHHHHHHHHHhhC
Q 022615 165 MPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIG-----YLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g-----~~~~~~d~~~l~~~i~~ll~~ 228 (294)
..-. |..-+ |.|+|+|+|+--.+..+............ -....-+++++.+++.+++.+
T Consensus 259 ~~DS----G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 259 SVDT----GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EESS----HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred ecCC----cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 7732 55555 77799999874222111111100011000 012223678888888877754
No 63
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=96.88 E-value=0.0065 Score=50.57 Aligned_cols=95 Identities=22% Similarity=0.320 Sum_probs=66.2
Q ss_pred CCceEEEeecccccccH--HHHHHHHHhC--CCcEEEEEcCCccHHHHHhhhcCC---CeEEEecccchhHHHHHhcCCE
Q 022615 90 DKPLIVHVGRLGVEKSL--DFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDV 162 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~--~~l~~~~~~~--~~~~l~i~G~~~~~~~~~~~~~~~---~v~~~g~~~~~~~~~~~~~ad~ 162 (294)
+..+++..|.-.+.|.+ +.+.++++.+ .+.+++++|...+.+..++..... .+.+.|..+-.++..+++.||+
T Consensus 185 ~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~ 264 (349)
T 3tov_A 185 DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNL 264 (349)
T ss_dssp CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSE
T ss_pred CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCE
Confidence 44566777765555553 4555555544 267888888777766665554432 3566777777999999999999
Q ss_pred EEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 163 FVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 163 ~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
+|..-. |..-+ |.++|+|+|+-
T Consensus 265 ~i~~Ds----G~~Hl-Aaa~g~P~v~l 286 (349)
T 3tov_A 265 LITNDS----GPMHV-GISQGVPIVAL 286 (349)
T ss_dssp EEEESS----HHHHH-HHTTTCCEEEE
T ss_pred EEECCC----CHHHH-HHhcCCCEEEE
Confidence 997731 44555 89999999985
No 64
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.67 E-value=0.007 Score=46.71 Aligned_cols=46 Identities=7% Similarity=0.068 Sum_probs=37.0
Q ss_pred CeEEEecccchhHHHHHh-cCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC
Q 022615 141 PAVFTGMLLGEELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 141 ~v~~~g~~~~~~~~~~~~-~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
++...+++ +++.++|. .||++|.= +..++++|++++|+|.|.-+.+
T Consensus 115 ~v~v~~f~--~~m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 115 KVIGFDFS--TKMQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp EEEECCSS--SSHHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCS
T ss_pred eEEEeecc--chHHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCc
Confidence 45566776 89999999 99999854 3467899999999999876553
No 65
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=96.60 E-value=0.02 Score=52.22 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=83.8
Q ss_pred CCCceEEEeecccccccHHH-HHHHH-------Hh-------------CCCcEEEEEcCCc----cHHHHHhhhc-----
Q 022615 89 PDKPLIVHVGRLGVEKSLDF-LKRVM-------DR-------------LPEARIAFIGDGP----YREELEKMFT----- 138 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~k~~~~-l~~~~-------~~-------------~~~~~l~i~G~~~----~~~~~~~~~~----- 138 (294)
++...++++-|+..+|...+ ++..+ .. ....++++.|... ..+.+.+++.
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 677 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADI 677 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 45678889999999998766 34332 22 2357777777521 1122222221
Q ss_pred --C-------CCeEEEecccchhHHHHHhcCCEEEeecC--CCCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcce
Q 022615 139 --G-------MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIG 207 (294)
Q Consensus 139 --~-------~~v~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g 207 (294)
+ .+|.|+....-.--..++..||+....|. .|+.|++-+-+|..|.+.|++-.|..-|+... ....++
T Consensus 678 iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~-vG~eN~ 756 (879)
T 1ygp_A 678 VNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITRE-IGEDNV 756 (879)
T ss_dssp HTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHH-HCGGGS
T ss_pred hccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHH-cCcccE
Confidence 1 14788887766777899999999998765 79999999999999999999988877777621 013466
Q ss_pred eecC
Q 022615 208 YLFN 211 (294)
Q Consensus 208 ~~~~ 211 (294)
++|-
T Consensus 757 fiFG 760 (879)
T 1ygp_A 757 FLFG 760 (879)
T ss_dssp EEES
T ss_pred EEcc
Confidence 6654
No 66
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=91.10 E-value=2.1 Score=35.46 Aligned_cols=102 Identities=7% Similarity=-0.046 Sum_probs=67.4
Q ss_pred HHHhhhcCCCeEEEecc------cchhHHHHHhcCCEEEeecC---CCCcchHHHHHHhcCCCEEeecCCCcccccccCC
Q 022615 132 ELEKMFTGMPAVFTGML------LGEELSQAYASGDVFVMPSE---SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ 202 (294)
Q Consensus 132 ~~~~~~~~~~v~~~g~~------~~~~~~~~~~~ad~~l~ps~---~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~ 202 (294)
.++++.+...|...|.. +.++..++++...+.|..-. .+-..-|+.+|+.+|+..|....+...++++
T Consensus 198 ~~~~L~k~i~Vd~~G~c~~~~~~~~~~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~P--- 274 (371)
T 2nzw_A 198 FYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFN--- 274 (371)
T ss_dssp HHHHHTTTSCCEECSSTTCCSSSCCSCHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTSC---
T ss_pred HHHHHhCcCCEeeCCCccCCCCCccccHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchhhhCC---
Confidence 34444444456666654 22567788888888887633 2335788999999997666655555666662
Q ss_pred CCcceeecCCCCHHHHHHHHHHHhhChHHHHHHH
Q 022615 203 DGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 236 (294)
Q Consensus 203 ~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~ 236 (294)
.+.--.+-+..+++++++.|..+-.|++.+.+.-
T Consensus 275 p~SfI~~~dF~s~~~La~yL~~L~~n~~~Y~~y~ 308 (371)
T 2nzw_A 275 PKSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDML 308 (371)
T ss_dssp GGGSEEGGGSSSHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCceEEcccCCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 1221122355689999999999999998877654
No 67
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=85.53 E-value=0.87 Score=34.09 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=40.0
Q ss_pred HHHHhcCCEEEeecCCCCcc--hHHHHHHhcCCCEEeecCCCc-ccccccC-------CCCcceeecCCCCHHHHHHHHH
Q 022615 154 SQAYASGDVFVMPSESETLG--LVVLEAMSSGIPVVGVRAGGI-PDIIPED-------QDGKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 154 ~~~~~~ad~~l~ps~~e~~~--~~~~Ea~a~G~pvI~~~~~~~-~e~~~~~-------~~~~~g~~~~~~d~~~l~~~i~ 223 (294)
.-+...||++|...- ++| .-+.|++..|+||++-+..++ .+.+..- .......+.-.+|++++.+.|.
T Consensus 113 ~~m~~~sda~IvlpG--G~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~ 190 (195)
T 1rcu_A 113 FVLLRNADVVVSIGG--EIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIE 190 (195)
T ss_dssp HHHHTTCSEEEEESC--CHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHH
T ss_pred HHHHHhCCEEEEecC--CCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHH
Confidence 356667887776432 333 337889999999999864432 2122100 1112223333458888888876
Q ss_pred HH
Q 022615 224 PL 225 (294)
Q Consensus 224 ~l 225 (294)
++
T Consensus 191 ~~ 192 (195)
T 1rcu_A 191 QI 192 (195)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 68
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=84.05 E-value=1.3 Score=35.34 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=54.2
Q ss_pred CceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccH----HHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEee
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR----EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 166 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~p 166 (294)
...|+..|..+ +--..+++++...+++.|+-+-+.... ....++.. +.-.|..-.+++.+++..+|++|-.
T Consensus 21 ~irV~V~Ga~G--rMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G---~~~~gv~v~~dl~~ll~~aDVvIDF 95 (288)
T 3ijp_A 21 SMRLTVVGANG--RMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIG---SDFLGVRITDDPESAFSNTEGILDF 95 (288)
T ss_dssp CEEEEESSTTS--HHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTT---CSCCSCBCBSCHHHHTTSCSEEEEC
T ss_pred CeEEEEECCCC--HHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhc---cCcCCceeeCCHHHHhcCCCEEEEc
Confidence 34555555322 223457777777787776544322110 01111111 1011222235778888899999976
Q ss_pred cCCCCcchHHHHHHhcCCCEEeecCCC
Q 022615 167 SESETLGLVVLEAMSSGIPVVGVRAGG 193 (294)
Q Consensus 167 s~~e~~~~~~~Ea~a~G~pvI~~~~~~ 193 (294)
+..+..-..+..++..|+|+|+...|.
T Consensus 96 T~p~a~~~~~~~~l~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 96 SQPQASVLYANYAAQKSLIHIIGTTGF 122 (288)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 654444444567889999999866654
No 69
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=83.95 E-value=1 Score=35.69 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCcEEEEEcCCccH----HHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhc
Q 022615 107 DFLKRVMDRLPEARIAFIGDGPYR----EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 182 (294)
Q Consensus 107 ~~l~~~~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~ 182 (294)
..+++++...++++++-+-+.... ....++. .+.- |..-.+++.+++..+|+++-.+..+..-..+..++..
T Consensus 21 ~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~---g~~~-gv~v~~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~~ 96 (272)
T 4f3y_A 21 RMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFL---GKQT-GVALTDDIERVCAEADYLIDFTLPEGTLVHLDAALRH 96 (272)
T ss_dssp HHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTT---TCCC-SCBCBCCHHHHHHHCSEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEEEecCcccccccHHHHh---CCCC-CceecCCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHc
Confidence 456777777777776654321110 0011111 1111 2223467888888999999877655444556678999
Q ss_pred CCCEEeecCCCc
Q 022615 183 GIPVVGVRAGGI 194 (294)
Q Consensus 183 G~pvI~~~~~~~ 194 (294)
|+|+|+...+..
T Consensus 97 G~~vVigTTG~s 108 (272)
T 4f3y_A 97 DVKLVIGTTGFS 108 (272)
T ss_dssp TCEEEECCCCCC
T ss_pred CCCEEEECCCCC
Confidence 999998766543
No 70
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=81.93 E-value=6.7 Score=26.77 Aligned_cols=108 Identities=16% Similarity=0.203 Sum_probs=64.1
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHh----cCCEEEeecC-CCCcchHHHHHHh---cCCCEEee
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA----SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV 189 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~----~ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~ 189 (294)
.+++|+.+.+ ....+...+...+......-+.++....+. ..|++++-.. .+.-|..+++.+. ..+|||.-
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 4666776543 234455555444443333334466666665 5688877544 3334555555543 36777653
Q ss_pred -cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 190 -RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 190 -~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
..... .+.+ +.|..+++..+.+.+++..+|..++...
T Consensus 84 s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 84 TGHGDLDNAILAM---KEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp ECTTCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHH---HhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 33322 2333 5677889999999999999999887643
No 71
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=81.42 E-value=9.7 Score=25.47 Aligned_cols=106 Identities=20% Similarity=0.146 Sum_probs=60.4
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHhc-----CCCEEee
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 189 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a~-----G~pvI~~ 189 (294)
.+++|+.+.+. ...+..... .+..+...-+.++..+.+.. .|++++-.. .+.-|..+++.+.. ++|||.-
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 83 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV 83 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE
Confidence 45666665432 233444443 33333333333555555543 577776543 33445566666543 6787653
Q ss_pred cC-CC--cccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 RA-GG--IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 ~~-~~--~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
.. .. ..+.+ ..|..+++..|.+.+++.+.|..++..
T Consensus 84 s~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 84 SGYAPRTEGPAD---QPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp ESCCC-----TT---SCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHh---hcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 22 21 12233 567788999999999999999998764
No 72
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=81.21 E-value=7.7 Score=27.17 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=45.3
Q ss_pred hhHHHHHh----cCCEEEeecCC-CCcchHHHHHH---hcCCCEEeecC-CCc---ccccccCCCCcceeecCCCCHHHH
Q 022615 151 EELSQAYA----SGDVFVMPSES-ETLGLVVLEAM---SSGIPVVGVRA-GGI---PDIIPEDQDGKIGYLFNPGDLDDC 218 (294)
Q Consensus 151 ~~~~~~~~----~ad~~l~ps~~-e~~~~~~~Ea~---a~G~pvI~~~~-~~~---~e~~~~~~~~~~g~~~~~~d~~~l 218 (294)
++..+.+. ..|++++-... +.-|..+++.+ ...+|||.... ... .+.+ +.|..+++..+.+.+++
T Consensus 71 ~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l 147 (157)
T 3hzh_A 71 EEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCL---IKGAKTFIVKPLDRAKV 147 (157)
T ss_dssp HHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHH---HTTCSEEEESSCCHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHH---HcCCCEEEeCCCCHHHH
Confidence 44444443 34887775442 33455555554 34677765432 222 2233 55778899999999999
Q ss_pred HHHHHHHhh
Q 022615 219 LSKLEPLLY 227 (294)
Q Consensus 219 ~~~i~~ll~ 227 (294)
.+.|..++.
T Consensus 148 ~~~i~~~l~ 156 (157)
T 3hzh_A 148 LQRVMSVFV 156 (157)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 999988764
No 73
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=80.68 E-value=12 Score=25.91 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=61.7
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc---CCEEEeecC-CCCcchHHHHHHh---cCCCEEee-
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 189 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~---ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~- 189 (294)
.+++|+.+.+. ...+...+.. +..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ...|+|.-
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 83 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLT 83 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEE
Confidence 46677765543 3344444433 4443333344666666543 388877544 3344555555543 46776653
Q ss_pred cCCC---cccccccCCCC-cceeecCCCCHHHHHHHHHHHhhChH
Q 022615 190 RAGG---IPDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYNQE 230 (294)
Q Consensus 190 ~~~~---~~e~~~~~~~~-~~g~~~~~~d~~~l~~~i~~ll~~~~ 230 (294)
.... ..+.+ ..+ ..+++..|.+.+++..+|..++....
T Consensus 84 ~~~~~~~~~~~~---~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 84 GNQDLTTAMEAV---NEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp CGGGHHHHHHHH---HHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---HcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 3222 12223 345 56889999999999999999876543
No 74
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=80.05 E-value=12 Score=25.50 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=64.7
Q ss_pred CcEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhc---CCEEEeecCC-C-CcchHHHHHHh--cCCCEEee
Q 022615 118 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSES-E-TLGLVVLEAMS--SGIPVVGV 189 (294)
Q Consensus 118 ~~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~---ad~~l~ps~~-e-~~~~~~~Ea~a--~G~pvI~~ 189 (294)
..+++|+.+.+ ....+...+...++.....-+.++....+.. .|++++-... + .-|..+++.+. .++|+|.-
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 35667776543 2344445554445444444444666666643 5888875543 3 34555555544 46787653
Q ss_pred -cCCC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 -RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 -~~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
.... ..+.+ ..|..+++..|.+.+++...|..++..
T Consensus 85 s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 85 TAHTEPAVVEKIR---SVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp ESSSSCCCCGGGG---GSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHH---hCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 22334 567889999999999999999888753
No 75
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=79.91 E-value=11 Score=25.00 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=59.9
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHh-----cCCCEEee-
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV- 189 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a-----~G~pvI~~- 189 (294)
++.++.+.+. ...+.......+......-+.++..+.+.. .|++++-.. .+.-|..+++.+. .++|+|.-
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 4555554432 233344444334333333333555555543 477776543 3344666777663 35787653
Q ss_pred cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 190 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 190 ~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
............+.|..+++..|.+.+++...+..++.
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 84 AKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 33322211111145778899999999999999988764
No 76
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=79.63 E-value=13 Score=25.82 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=63.8
Q ss_pred CcEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHh-----cCCCEEe
Q 022615 118 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVG 188 (294)
Q Consensus 118 ~~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a-----~G~pvI~ 188 (294)
..+++|+.+.+ ....+...+...+..+...-+.++..+.+.. .|++++-.. .+.-|..+++.+. .++|+|.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVIL 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEE
Confidence 35666666543 3344555555544443333344566666554 477777544 3344566666664 4678765
Q ss_pred ec-CCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 189 VR-AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 189 ~~-~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.. ...........+.|..+++..|.+.+++...|..++.
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 87 LTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp EECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 43 2222111111145678889999999999999998875
No 77
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=78.94 E-value=13 Score=25.23 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=61.1
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHhc--CCCEEee-c
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMSS--GIPVVGV-R 190 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a~--G~pvI~~-~ 190 (294)
..+++|+.+.+. ...+...+...+......-+.++..+.+. ..|++++-... +.-|..+++.+.. .+|+|.- .
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEES
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEc
Confidence 356677776542 34455555444443332223355555554 35777764432 2335556666542 5777653 3
Q ss_pred CCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 191 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 191 ~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.... .+.+ +.|..+++..|.+.+++...|..++.
T Consensus 84 ~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 84 INEDQSILNAL---NSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCCHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 3222 2233 55778899999999999999988764
No 78
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=78.36 E-value=13 Score=24.99 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=63.1
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCe--EEEecccchhHHHHHhc---------CCEEEeecCC-CCcchHHHHHHh----
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPA--VFTGMLLGEELSQAYAS---------GDVFVMPSES-ETLGLVVLEAMS---- 181 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v--~~~g~~~~~~~~~~~~~---------ad~~l~ps~~-e~~~~~~~Ea~a---- 181 (294)
.+++++.+.+ ....+...+...+. .....-+.++....+.. .|++++-... +.-|..+++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcc
Confidence 4566666543 33455555554433 33333344666666654 6888775443 334555666654
Q ss_pred -cCCCEEee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 182 -SGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 182 -~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.++|+|.- ............+.|..+++..|-+.+++...|..++.
T Consensus 83 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 83 LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 45777654 33221111111145778889999999999999988764
No 79
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=77.83 E-value=15 Score=29.57 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=82.6
Q ss_pred ccHHHHHHHHHHhCCeEEec--chhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHH-HhhcCCCCCceEEEe
Q 022615 21 KPMWLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRW-RLSNGEPDKPLIVHV 97 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 97 (294)
-.+.-..+.+-+.+|.|+.= .+...+.+.++- .+-| -|+-|-+..+|...-.+... +...+.-+...|.|+
T Consensus 84 Esl~DTarvls~~~D~iviR~~~~~~~~~lA~~~-----~vPV-INag~g~~~HPtQ~LaDl~Ti~e~~g~l~glkva~v 157 (306)
T 4ekn_B 84 ESLIDTIRVISGYADIIVLRHPSEGAARLASEYS-----QVPI-INAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFV 157 (306)
T ss_dssp CCHHHHHHHHHHHCSEEEEECSSTTHHHHHHHHC-----SSCE-EESCSSSSCCHHHHHHHHHHHHHHHSCSTTCEEEEE
T ss_pred CCHHHHHHHHHHhCcEEEEEcCChHHHHHHHHhC-----CCCE-EeCCCCCCcCcHHHHHHHHHHHHHhCCcCCCEEEEE
Confidence 34556677778889988874 344555555543 2333 46655555555432221111 111123356789999
Q ss_pred ecccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC-CCCcc
Q 022615 98 GRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLG 173 (294)
Q Consensus 98 G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~-~e~~~ 173 (294)
|......-..-++.++..++++++.+++...+ .+.+.+.++..+..+.- .+++.+.+..||++..... .|.++
T Consensus 158 GD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~---~~d~~eav~~aDvvy~~~~q~er~~ 233 (306)
T 4ekn_B 158 GDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYE---KESLDDLDDDIDVLYVTRIQKERFP 233 (306)
T ss_dssp SCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEE---ESCGGGCCTTCSEEEECCCCGGGCC
T ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEE---EcCHHHHhcCCCEEEeCCcccccCC
Confidence 97755555678888999888899999986322 23333333322322111 1456677899999887644 24443
No 80
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=77.21 E-value=7.4 Score=26.31 Aligned_cols=111 Identities=15% Similarity=0.081 Sum_probs=59.1
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc-CCEEEeecCC-CCcchHHHHHHh----c---CCC-E
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS-GDVFVMPSES-ETLGLVVLEAMS----S---GIP-V 186 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~-ad~~l~ps~~-e~~~~~~~Ea~a----~---G~p-v 186 (294)
..++.++.+.+. ...+.......+......-+.++....+.. .|++++-... +.-|..+++.+. . ..| +
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 86 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLL 86 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceE
Confidence 456777765543 233444444333333322233455555432 2887765432 333555555553 1 344 4
Q ss_pred E-eecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 187 V-GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 187 I-~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
| .+............+.|-.+++..|.+.+++.+.+..++..
T Consensus 87 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 87 VALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp EEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 4 44443322111111457788999999999999999888754
No 81
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=76.00 E-value=6.1 Score=30.69 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=42.9
Q ss_pred EEEEEc-CCccHHHHHhhhc-CCCeEEEecccc-hhHHHHHh-cCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC
Q 022615 120 RIAFIG-DGPYREELEKMFT-GMPAVFTGMLLG-EELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 193 (294)
Q Consensus 120 ~l~i~G-~~~~~~~~~~~~~-~~~v~~~g~~~~-~~~~~~~~-~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~ 193 (294)
++.++| .|..-..+.+.+. ..+..+.+.++. +++.+++. .+|+++-.+..+..-..+..++..|+|+|+...+.
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~ 79 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGF 79 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCC
Confidence 456666 3554444444433 224444443322 34555554 78999966665555444556788999998865543
No 82
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=75.57 E-value=5.5 Score=31.98 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=54.6
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESET 171 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~ 171 (294)
..++.+|--. -+...+..++...+++.++-+-+ ...+..++..+..++.. .+++.+++..+|+++..+....
T Consensus 7 ~~igiIG~G~--~g~~~~~~~l~~~~~~~l~av~d-~~~~~~~~~a~~~~~~~-----~~~~~~ll~~~D~V~i~tp~~~ 78 (308)
T 3uuw_A 7 IKMGMIGLGS--IAQKAYLPILTKSERFEFVGAFT-PNKVKREKICSDYRIMP-----FDSIESLAKKCDCIFLHSSTET 78 (308)
T ss_dssp CEEEEECCSH--HHHHHTHHHHTSCSSSEEEEEEC-SCHHHHHHHHHHHTCCB-----CSCHHHHHTTCSEEEECCCGGG
T ss_pred CcEEEEecCH--HHHHHHHHHHHhCCCeEEEEEEC-CCHHHHHHHHHHcCCCC-----cCCHHHHHhcCCEEEEeCCcHh
Confidence 4566666421 12224667777888888874433 22334444443333321 3566667779999988765554
Q ss_pred cchHHHHHHhcCCCEEee
Q 022615 172 LGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 172 ~~~~~~Ea~a~G~pvI~~ 189 (294)
-...+.+++..|++|++-
T Consensus 79 h~~~~~~al~~gk~vl~E 96 (308)
T 3uuw_A 79 HYEIIKILLNLGVHVYVD 96 (308)
T ss_dssp HHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHCCCcEEEc
Confidence 455577899999999975
No 83
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=75.35 E-value=16 Score=24.64 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=61.4
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh-----cCCCEEee
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS-----SGIPVVGV 189 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a-----~G~pvI~~ 189 (294)
.+++|+.+.+. ...+...+...+......-+.++..+.+.. .|++++-... +.-|..+++.+. ..+|+|.-
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~ 84 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILML 84 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEE
Confidence 45666665432 334444444334333333333555555543 5888775443 334556666653 35787653
Q ss_pred -cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 -RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 -~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
............+.|..+++..|.+.+++...|..++..
T Consensus 85 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 85 TAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp ECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 332222111111457788999999999999999998764
No 84
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=74.93 E-value=17 Score=24.72 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=61.7
Q ss_pred CcEEEEEcCCc-cHHHHHhhhcCCCe--EEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHhc-----CCCE
Q 022615 118 EARIAFIGDGP-YREELEKMFTGMPA--VFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPV 186 (294)
Q Consensus 118 ~~~l~i~G~~~-~~~~~~~~~~~~~v--~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a~-----G~pv 186 (294)
..+++|+.+.+ ....+...+...+. .....-+.++..+.+.. .|++++-.. .+.-|..+++.+.. ++|+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCE
Confidence 45666776543 23344444443321 22222233566565554 477776543 33446667777654 5787
Q ss_pred EeecC-CCcc---cccccCCCCcceeecCCC-CHHHHHHHHHHHhh
Q 022615 187 VGVRA-GGIP---DIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLY 227 (294)
Q Consensus 187 I~~~~-~~~~---e~~~~~~~~~~g~~~~~~-d~~~l~~~i~~ll~ 227 (294)
|+-.. .... +.+ ..|..+++..+. +.+++.++|..++.
T Consensus 85 i~~s~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 85 VILTDNVSDDRAKQCM---AAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp EEEETTCCHHHHHHHH---HTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHH---HcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 75432 2222 233 557788999999 99999999988864
No 85
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=74.82 E-value=5.4 Score=27.22 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=62.2
Q ss_pred cEEEEEcCCcc-HHHHHhhhcC-CCeEEEecccchhHHHHHhc---CCEEEeecCCC--CcchHHHHHHh-----cCCCE
Q 022615 119 ARIAFIGDGPY-REELEKMFTG-MPAVFTGMLLGEELSQAYAS---GDVFVMPSESE--TLGLVVLEAMS-----SGIPV 186 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~---ad~~l~ps~~e--~~~~~~~Ea~a-----~G~pv 186 (294)
.+++|+.+.+. ...+...+.. .++.+...-+.++..+.+.. .|++++-.... .-|..+++.+. .++||
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~i 84 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPV 84 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCE
Confidence 45666665432 3344444444 34444433333555555544 57777654432 23555665544 36887
Q ss_pred EeecC-CCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 187 VGVRA-GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 187 I~~~~-~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
|.-.. ... .+.+ +.|..+++..|.+.+++.++|..++...
T Consensus 85 i~ls~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 85 IIATKSDNPGYRHAAL---KFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp EEEESCCCHHHHHHHH---HSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred EEEeCCCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 75432 221 2223 4577889999999999999999988654
No 86
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=74.24 E-value=17 Score=24.47 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=62.7
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHhc-----CCCEEe
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 188 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a~-----G~pvI~ 188 (294)
..+++|+.+.+. ...+...+...++.....-+.++..+.+.. .|++++-.. .+.-|..+++.+.. .+|+|.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 345666665432 334444444333333222233555555543 477776544 34446667776654 678775
Q ss_pred ecCCC----cc-cccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 189 VRAGG----IP-DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 189 ~~~~~----~~-e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
-.... .. +.+ ..|..+++..|.+.+++..+|..++..
T Consensus 86 ~s~~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 86 VSANAREGELEFNSQ---PLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp ECTTHHHHHHHHCCT---TTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHhh---hcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 43221 11 334 567788999999999999999988753
No 87
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=73.46 E-value=18 Score=24.30 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=37.9
Q ss_pred CCEEEeecCCCCcchHHHHHHh--c-CCCEEee-cCCCc---ccccccCCCCcceeecCCC-CHHHHHHHHHHHhhC
Q 022615 160 GDVFVMPSESETLGLVVLEAMS--S-GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYN 228 (294)
Q Consensus 160 ad~~l~ps~~e~~~~~~~Ea~a--~-G~pvI~~-~~~~~---~e~~~~~~~~~~g~~~~~~-d~~~l~~~i~~ll~~ 228 (294)
.|++++| +.-|..+++.+. . ++|||.- ..... .+.+ ..|..+++..+. +.+++...|..++..
T Consensus 63 ~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 63 YDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAF---EQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp CSEEEEC---STTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHH---HTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CCEEEEc---CccHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHH---HcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 4666622 223444444443 3 6777653 33221 2223 457788899998 999999999888753
No 88
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=73.16 E-value=15 Score=25.09 Aligned_cols=110 Identities=10% Similarity=0.072 Sum_probs=61.8
Q ss_pred CcEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecC-CCCcchHHHHHHhc-----CCCEEe
Q 022615 118 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 188 (294)
Q Consensus 118 ~~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~-~e~~~~~~~Ea~a~-----G~pvI~ 188 (294)
..+++++.+.+ ....+...+...++.....-+.++....+. ..|++++-.. .+.-|..+++.+.. ++|||.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 87 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIA 87 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 45666666543 233444444433433333333355555544 3688877544 23345667777654 577765
Q ss_pred e-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 189 V-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 189 ~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
- ..............|..+++..+.+.+++...|..++.
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 88 LSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 3 33322111100144677889999999999999988875
No 89
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=72.89 E-value=17 Score=24.22 Aligned_cols=110 Identities=20% Similarity=0.286 Sum_probs=59.7
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeE-EEecccchhHHHHH-h--cCCEEEeecC-CCCcchHHHHHHhc-----CCCEE
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAV-FTGMLLGEELSQAY-A--SGDVFVMPSE-SETLGLVVLEAMSS-----GIPVV 187 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~-~~g~~~~~~~~~~~-~--~ad~~l~ps~-~e~~~~~~~Ea~a~-----G~pvI 187 (294)
.++.++.+.+ ....+...+...+.. ....-+..+....+ . ..|++++-.. .+.-|..+++.+.. .+|||
T Consensus 6 ~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii 85 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPII 85 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEE
Confidence 4566666543 233444444433321 12222224444333 2 3678776443 33446677777653 57876
Q ss_pred ee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 188 GV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 188 ~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
.. ............+.|-.+++..|-+.+++.++|..++..
T Consensus 86 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 86 MITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 54 332222111111457788999999999999999988753
No 90
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=72.16 E-value=7.1 Score=28.12 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=23.7
Q ss_pred HHHhcCCEEEeecC-CCCcchHHHH---HHhcCCCEEee
Q 022615 155 QAYASGDVFVMPSE-SETLGLVVLE---AMSSGIPVVGV 189 (294)
Q Consensus 155 ~~~~~ad~~l~ps~-~e~~~~~~~E---a~a~G~pvI~~ 189 (294)
..+..||++|.-.. .+.-+.+.+| |.+.|+||++-
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~ 103 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVAL 103 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 56899999887532 2222444444 67899999875
No 91
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=72.13 E-value=15 Score=29.67 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCCCCcchHHHHHHhcCCC
Q 022615 108 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIP 185 (294)
Q Consensus 108 ~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~e~~~~~~~Ea~a~G~p 185 (294)
.++.++...++++++-+-+ ...+..++..+..++. ..++.+++. .+|+++..+....-...+.+++..|++
T Consensus 17 ~~~~~l~~~~~~~l~av~d-~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~ 89 (331)
T 4hkt_A 17 VHAKAVSGNADARLVAVAD-AFPAAAEAIAGAYGCE------VRTIDAIEAAADIDAVVICTPTDTHADLIERFARAGKA 89 (331)
T ss_dssp HHHHHHHHCTTEEEEEEEC-SSHHHHHHHHHHTTCE------ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCE
T ss_pred HHHHHHhhCCCcEEEEEEC-CCHHHHHHHHHHhCCC------cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHHcCCc
Confidence 4666777778887764433 2334455555555554 366777787 789988876544445557789999999
Q ss_pred EEeec
Q 022615 186 VVGVR 190 (294)
Q Consensus 186 vI~~~ 190 (294)
|++-+
T Consensus 90 v~~EK 94 (331)
T 4hkt_A 90 IFCEK 94 (331)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99753
No 92
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=72.08 E-value=19 Score=23.92 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=59.6
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecC-CCCcchHHHHHHhc-----CCCEEee
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 189 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~-~e~~~~~~~Ea~a~-----G~pvI~~ 189 (294)
.+++|+.+.+. ...+...+...+......-+.++....+. ..|++++-.. .+.-|..+++.+.. ..|+|.+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVV 86 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEE
Confidence 45666665432 33444444433433333333355555554 3577776544 33446667776653 2444444
Q ss_pred cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 ~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
............+.|..+++..|.+.+++.++|......
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 87 SGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp CCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred eCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 332222111111457788999999999999999888654
No 93
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=71.91 E-value=24 Score=28.62 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=56.6
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 169 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~ 169 (294)
..++++|.-.- | ..++.++...+++.++-+-+ ...+..+......++.. .+++.+++. .+|+++..+..
T Consensus 5 ~rvgiiG~G~~--g-~~~~~~l~~~~~~~l~av~d-~~~~~~~~~a~~~g~~~-----~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRI--G-HVHAANIAANPDLELVVIAD-PFIEGAQRLAEANGAEA-----VASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHH--H-HHHHHHHHHCTTEEEEEEEC-SSHHHHHHHHHTTTCEE-----ESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHH--H-HHHHHHHHhCCCcEEEEEEC-CCHHHHHHHHHHcCCce-----eCCHHHHhcCCCCCEEEEeCCc
Confidence 34566664211 1 24667777788887764433 23445555555545332 267778888 78998887655
Q ss_pred CCcchHHHHHHhcCCCEEeec
Q 022615 170 ETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
..-...+.+++..|++|++-+
T Consensus 76 ~~h~~~~~~al~~gk~v~~EK 96 (344)
T 3euw_A 76 STHVDLITRAVERGIPALCEK 96 (344)
T ss_dssp GGHHHHHHHHHHTTCCEEECS
T ss_pred hhhHHHHHHHHHcCCcEEEEC
Confidence 444556788999999999754
No 94
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=71.64 E-value=18 Score=23.61 Aligned_cols=108 Identities=13% Similarity=0.152 Sum_probs=59.2
Q ss_pred EEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC--CCcchHHHHHHh-----cCCCEEee
Q 022615 120 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES--ETLGLVVLEAMS-----SGIPVVGV 189 (294)
Q Consensus 120 ~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~--e~~~~~~~Ea~a-----~G~pvI~~ 189 (294)
++.++.+.+ ....+...+...+......-+.++....+. ..|++++-... +.-|..+++.+. .++|+|..
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 556665443 223333333333333322223345444443 35777764432 334556666653 46888776
Q ss_pred cCCCcccc-cccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 RAGGIPDI-IPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 ~~~~~~e~-~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
.....+. ......|..+++..|.+.+++...+..++..
T Consensus 87 -~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 87 -GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp -ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred -ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 3222111 1111567788999999999999999888654
No 95
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=71.61 E-value=14 Score=30.85 Aligned_cols=96 Identities=8% Similarity=-0.128 Sum_probs=53.9
Q ss_pred CceEEEeecccccccHHHHHHHHHhCCCcEEEE-EcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc-------CCE
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS-------GDV 162 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~-------ad~ 162 (294)
...++.+|.-....--...+.++...+++.++- +- ....+..++..+..++. ......++.+++.. .|+
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~-d~~~~~a~~~a~~~g~~--~~~~~~~~~~ll~~~~~~~~~vD~ 88 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAF-DIDPIRGSAFGEQLGVD--SERCYADYLSMFEQEARRADGIQA 88 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEEC-CSSHHHHHHHHHHTTCC--GGGBCSSHHHHHHHHTTCTTCCSE
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEe-CCCHHHHHHHHHHhCCC--cceeeCCHHHHHhcccccCCCCCE
Confidence 455666663321000123345566666777653 22 23444555555544431 00123567777765 899
Q ss_pred EEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 163 FVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 163 ~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
++..+....-.-.+.+++..|++|++-
T Consensus 89 V~i~tp~~~H~~~~~~al~aGkhVl~E 115 (398)
T 3dty_A 89 VSIATPNGTHYSITKAALEAGLHVVCE 115 (398)
T ss_dssp EEEESCGGGHHHHHHHHHHTTCEEEEC
T ss_pred EEECCCcHHHHHHHHHHHHCCCeEEEe
Confidence 888765444445578999999999984
No 96
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=71.13 E-value=13 Score=30.45 Aligned_cols=93 Identities=10% Similarity=0.080 Sum_probs=56.3
Q ss_pred CCceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeec
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPS 167 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps 167 (294)
+...++++|.-.- +...++.++...+++.++-+-+ ...+..++..+..++... .++.+++. ..|+++..+
T Consensus 26 ~~~rigiIG~G~~--g~~~~~~~l~~~~~~~l~av~d-~~~~~~~~~a~~~g~~~~-----~~~~~ll~~~~~D~V~i~t 97 (350)
T 3rc1_A 26 NPIRVGVIGCADI--AWRRALPALEAEPLTEVTAIAS-RRWDRAKRFTERFGGEPV-----EGYPALLERDDVDAVYVPL 97 (350)
T ss_dssp CCEEEEEESCCHH--HHHTHHHHHHHCTTEEEEEEEE-SSHHHHHHHHHHHCSEEE-----ESHHHHHTCTTCSEEEECC
T ss_pred CceEEEEEcCcHH--HHHHHHHHHHhCCCeEEEEEEc-CCHHHHHHHHHHcCCCCc-----CCHHHHhcCCCCCEEEECC
Confidence 3456777774211 1224567777788888764432 223444444444444322 56677776 479888876
Q ss_pred CCCCcchHHHHHHhcCCCEEeec
Q 022615 168 ESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
....-.-.+.+++..|++|++-+
T Consensus 98 p~~~h~~~~~~al~aGk~Vl~EK 120 (350)
T 3rc1_A 98 PAVLHAEWIDRALRAGKHVLAEK 120 (350)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEES
T ss_pred CcHHHHHHHHHHHHCCCcEEEeC
Confidence 54444455778999999999753
No 97
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=70.90 E-value=18 Score=23.18 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=58.2
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh-----cCCCEEe-e
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS-----SGIPVVG-V 189 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a-----~G~pvI~-~ 189 (294)
+++++.+.+. ...+.......+......-+.++....+. ..|++++-... +.-|..+++.+. .++|+|. +
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 4556655432 33444444433433333333355554444 35777765443 334556666664 4677765 3
Q ss_pred cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 190 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 190 ~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
......+.. ..+..+++..|.+.+++...+..++.
T Consensus 83 ~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 83 GEPPVDPLL---TAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SSCCSSHHH---HHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCCchhhh---hcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 332222333 44667788888899999999887654
No 98
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=70.78 E-value=14 Score=28.26 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=29.3
Q ss_pred hhHHHHHhcCCEEEeecCCC-----------CcchHHHHHHhcCCCEEeecC
Q 022615 151 EELSQAYASGDVFVMPSESE-----------TLGLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e-----------~~~~~~~Ea~a~G~pvI~~~~ 191 (294)
++..+.+..||.+++|. .+ ++-..+-|++..|+|++.+..
T Consensus 71 ~d~~~~l~~ad~I~lpG-G~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sA 121 (229)
T 1fy2_A 71 ADPLAAIEKAEIIIVGG-GNTFQLLKESRERGLLAPMADRVKRGALYIGWSA 121 (229)
T ss_dssp SCHHHHHHHCSEEEECC-SCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETH
T ss_pred ccHHHHHhcCCEEEECC-CcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECH
Confidence 45567888899999986 22 344557788889999987643
No 99
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=70.72 E-value=12 Score=30.49 Aligned_cols=93 Identities=12% Similarity=-0.006 Sum_probs=57.2
Q ss_pred CCceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeec
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPS 167 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps 167 (294)
+-+.++.+|.-. -+-..++.+++..++++++-+.+ ...+..++..++.++. -...++.+++.. .|+++..+
T Consensus 22 ~mirigiIG~G~--ig~~~~~~~~~~~~~~~lvav~d-~~~~~a~~~a~~~g~~----~~y~d~~ell~~~~iDaV~I~t 94 (350)
T 4had_A 22 SMLRFGIISTAK--IGRDNVVPAIQDAENCVVTAIAS-RDLTRAREMADRFSVP----HAFGSYEEMLASDVIDAVYIPL 94 (350)
T ss_dssp CCEEEEEESCCH--HHHHTHHHHHHHCSSEEEEEEEC-SSHHHHHHHHHHHTCS----EEESSHHHHHHCSSCSEEEECS
T ss_pred CccEEEEEcChH--HHHHHHHHHHHhCCCeEEEEEEC-CCHHHHHHHHHHcCCC----eeeCCHHHHhcCCCCCEEEEeC
Confidence 335677777421 12233577888889988875544 2344455555544431 012567777765 68888766
Q ss_pred CCCCcchHHHHHHhcCCCEEee
Q 022615 168 ESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
....-.-.+.+|+.+|++|++-
T Consensus 95 P~~~H~~~~~~al~aGkhVl~E 116 (350)
T 4had_A 95 PTSQHIEWSIKAADAGKHVVCE 116 (350)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCchhHHHHHHHHhcCCEEEEe
Confidence 5444445578999999999985
No 100
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=70.27 E-value=10 Score=30.98 Aligned_cols=82 Identities=6% Similarity=-0.074 Sum_probs=47.3
Q ss_pred HHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecc-------------cchhHHHHHhcCCEEEeecCCCCcch
Q 022615 108 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGML-------------LGEELSQAYASGDVFVMPSESETLGL 174 (294)
Q Consensus 108 ~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~-------------~~~~~~~~~~~ad~~l~ps~~e~~~~ 174 (294)
.+++++...|+++++-+.+.. .+......+..++...|.. -..+..+++..+|+++..+-...--.
T Consensus 16 ~~~r~l~~~~~~elvav~d~~-~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~~~h~~ 94 (334)
T 2czc_A 16 RVAYAVTKQDDMELIGITKTK-PDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAK 94 (334)
T ss_dssp HHHHHHHTCTTEEEEEEEESS-CSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCSTTHHHH
T ss_pred HHHHHHhcCCCCEEEEEEcCC-HHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEEEECCCccccHH
Confidence 577788888888876665432 2233333333332233321 12356667778999987664332122
Q ss_pred HHHHHHhcCCCEEeec
Q 022615 175 VVLEAMSSGIPVVGVR 190 (294)
Q Consensus 175 ~~~Ea~a~G~pvI~~~ 190 (294)
....++..|++||++.
T Consensus 95 ~a~~~l~aGk~Vi~sa 110 (334)
T 2czc_A 95 NKPLYEKAGVKAIFQG 110 (334)
T ss_dssp HHHHHHHHTCEEEECT
T ss_pred HHHHHHHcCCceEeec
Confidence 3447788899999763
No 101
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=69.07 E-value=25 Score=24.19 Aligned_cols=107 Identities=14% Similarity=0.207 Sum_probs=58.7
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh---cCCCEEee-c
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 190 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~-~ 190 (294)
.+++|+.+.+. ...+...+...++.+...-+.++....+.. .|++++-... +.-|..+++.+. .++|||.- .
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEC
Confidence 34555654432 233444444334333333233444444433 4777765432 333445555543 46887653 2
Q ss_pred CCC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 191 AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 191 ~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
... ..+.+ ..|..+++..|.+.+++...|..++..
T Consensus 84 ~~~~~~~~~~~---~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 84 HGDIPMAVQAI---QDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp GGGHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHH---hcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 222 22233 457788899999999999999988754
No 102
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=68.93 E-value=45 Score=26.99 Aligned_cols=91 Identities=10% Similarity=0.019 Sum_probs=53.8
Q ss_pred CCceEEEeecccccccHHHHHHHHH-hCCCcEEEEEcCCccHHHHHhhhcCCCe-EEEecccchhHHHHHh--cCCEEEe
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMD-RLPEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYA--SGDVFVM 165 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~-~~~~~~l~i~G~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~--~ad~~l~ 165 (294)
+...++.+|.-. -| ...+.++. ..++++++.+-+ ...+..++..+..++ .. ..++.+++. .+|+++.
T Consensus 7 ~~~~v~iiG~G~--ig-~~~~~~l~~~~~~~~~vav~d-~~~~~~~~~a~~~g~~~~-----~~~~~~~l~~~~~D~V~i 77 (346)
T 3cea_A 7 KPLRAAIIGLGR--LG-ERHARHLVNKIQGVKLVAACA-LDSNQLEWAKNELGVETT-----YTNYKDMIDTENIDAIFI 77 (346)
T ss_dssp CCEEEEEECCST--TH-HHHHHHHHHTCSSEEEEEEEC-SCHHHHHHHHHTTCCSEE-----ESCHHHHHTTSCCSEEEE
T ss_pred CcceEEEEcCCH--HH-HHHHHHHHhcCCCcEEEEEec-CCHHHHHHHHHHhCCCcc-----cCCHHHHhcCCCCCEEEE
Confidence 344566666421 12 23556666 677877654433 233444455554443 22 245677776 6899888
Q ss_pred ecCCCCcchHHHHHHhcCCCEEee
Q 022615 166 PSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 166 ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
.+....-...+.+++..|++|++-
T Consensus 78 ~tp~~~h~~~~~~al~~G~~v~~e 101 (346)
T 3cea_A 78 VAPTPFHPEMTIYAMNAGLNVFCE 101 (346)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred eCChHhHHHHHHHHHHCCCEEEEc
Confidence 765444445567889999999984
No 103
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=68.71 E-value=23 Score=28.61 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=55.0
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 169 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~ 169 (294)
..++.+|.-.- -..+++++...+++.++-+-+. ..+..++.....++. ...+++.+++. .+|+++..+..
T Consensus 6 ~~igiiG~G~~---g~~~~~~l~~~~~~~l~av~d~-~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 6 IRYGIMSTAQI---VPRFVAGLRESAQAEVRGIASR-RLENAQKMAKELAIP----VAYGSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp EEEEECSCCTT---HHHHHHHHHHSSSEEEEEEBCS-SSHHHHHHHHHTTCC----CCBSSHHHHHHCTTCSEEEECCCG
T ss_pred EEEEEECchHH---HHHHHHHHHhCCCcEEEEEEeC-CHHHHHHHHHHcCCC----ceeCCHHHHhcCCCCCEEEEcCCC
Confidence 45666664211 2346777788888887644332 223344444433321 12367778887 78988876654
Q ss_pred CCcchHHHHHHhcCCCEEeec
Q 022615 170 ETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
..-...+.+++..|++|++-+
T Consensus 78 ~~h~~~~~~al~~gk~vl~EK 98 (330)
T 3e9m_A 78 QGHYSAAKLALSQGKPVLLEK 98 (330)
T ss_dssp GGHHHHHHHHHHTTCCEEECS
T ss_pred HHHHHHHHHHHHCCCeEEEeC
Confidence 444455778999999999754
No 104
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=68.11 E-value=25 Score=23.68 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=60.3
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh-----cCCCEEee
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS-----SGIPVVGV 189 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a-----~G~pvI~~ 189 (294)
.+++++.+.+. ...+...+...+......-+..+....+.. .|++++-... +.-|..+++.+. ..+|||..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~l 83 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLML 83 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEE
Confidence 35666665432 233444444334333333333555555543 5887775443 334566777764 25787653
Q ss_pred -cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 190 -RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 190 -~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
..............+..+++..|.+.+++...|..++...
T Consensus 84 s~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred ECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 3322211111112234688899999999999999887643
No 105
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=67.94 E-value=20 Score=23.50 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=56.2
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh-----cCCCEEee-
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS-----SGIPVVGV- 189 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a-----~G~pvI~~- 189 (294)
++.++.+.+. ...+.......+......-+.++..+.+.. .|++++-... +.-|..+++.+. .+.|+|.-
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 83 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLT 83 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEe
Confidence 4555554432 233333333333332222222444444433 4777764332 334556666664 35777653
Q ss_pred cCCC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 190 RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 190 ~~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.... ..+.+ +.|..+++..|.+.+++...+..++.
T Consensus 84 ~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 84 ARGEEEDRVRGL---ETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp ETTHHHHHHTTC---CCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---hcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 3222 22333 56778899999999999999988764
No 106
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=67.51 E-value=23 Score=23.24 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=61.9
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHh-----cCCCEEee
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV 189 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a-----~G~pvI~~ 189 (294)
.+++|+.+.+ ....+...+...+......-+.++..+.+.. .|++++-.. .+.-|..+++.+. .++|+|..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE
Confidence 4566776543 3345555555545444433344666666643 577776543 3444566666654 34777653
Q ss_pred -cCCCc--ccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 -RAGGI--PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 -~~~~~--~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
..... ...+ ..+..+++..|-+.+++.+++......
T Consensus 84 s~~~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 84 SGFAKNDLGKEA---CELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp ECC-CTTCCHHH---HHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred ECCcchhHHHHH---HHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 22221 2223 446677899999999999999887654
No 107
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=67.40 E-value=21 Score=24.58 Aligned_cols=108 Identities=11% Similarity=0.149 Sum_probs=58.9
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCC-Ce-EEEecccchhHHHHHhc---CCEEEeecCC-CCcchHHHHHHh---cCCCEE
Q 022615 118 EARIAFIGDGPY-REELEKMFTGM-PA-VFTGMLLGEELSQAYAS---GDVFVMPSES-ETLGLVVLEAMS---SGIPVV 187 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~-~v-~~~g~~~~~~~~~~~~~---ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI 187 (294)
..+++|+.+.+. ...+...+... +. .....-+.++....+.. .|++++-... +.-|..+++.+. .++|+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 346667765432 33444444332 22 22222233666666655 5787765432 233555555553 467876
Q ss_pred ee-cCCC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 188 GV-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 188 ~~-~~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
.- .... ..+.+ ..|..+++..+.+.+++...|..++..
T Consensus 83 ~ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 83 LISGETDHELIRAAL---EAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EC-----CHHHHHHH---HTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHH---HccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 53 2222 12223 457788889999999999999998764
No 108
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=66.79 E-value=23 Score=28.72 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=56.7
Q ss_pred cchhHHHHHhcCCEEEeecC-CCCcchHHHHHHhcCCCEEeecCCCcccc-ccc-CCC--CcceeecCCCCHHHHHHHHH
Q 022615 149 LGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDI-IPE-DQD--GKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~-~~~-~~~--~~~g~~~~~~d~~~l~~~i~ 223 (294)
+...-..-++.||++|.-.. .|++-.++++... +.++|....+ +... ... ..+ ...-++.++.+...+++.|.
T Consensus 84 ptp~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~g-i~~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~ 161 (321)
T 1xvl_A 84 PTPSDIVKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTEG-IEPIPIADGPYTDKPNPHAWMSPRNALVYVENIR 161 (321)
T ss_dssp CCHHHHHHHHTCSEEEECCTTSSTTHHHHHHTSS-SCCEEETTTT-CCCCBCCSSSSTTSBCCCGGGSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCEEEECCCChHHHHHHHHHhcC-CCcEEEccCC-cccccccccCCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 33444577899999998654 6888788888766 6666643322 1111 000 001 12334566666777777777
Q ss_pred HHhh--ChHHHHHHHHHHHHHHH
Q 022615 224 PLLY--NQELRETMGQAARQEME 244 (294)
Q Consensus 224 ~ll~--~~~~~~~~~~~~~~~~~ 244 (294)
..|. ||+......+|+..+.+
T Consensus 162 ~~L~~~DP~~a~~Y~~Na~~~~~ 184 (321)
T 1xvl_A 162 QAFVELDPDNAKYYNANAAVYSE 184 (321)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHCcccHHHHHHHHHHHHH
Confidence 7664 78777777777776654
No 109
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=66.38 E-value=41 Score=25.59 Aligned_cols=76 Identities=9% Similarity=-0.014 Sum_probs=45.4
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEec-ccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCccc
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGM-LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 196 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e 196 (294)
+..+.++... ..+.++++....++.+... ... +.+..+|+++..+........+.+....|+||-+.|.+...+
T Consensus 54 GA~VtVvap~-~~~~l~~l~~~~~i~~i~~~~~~----~dL~~adLVIaAT~d~~~N~~I~~~ak~gi~VNvvD~p~~~~ 128 (223)
T 3dfz_A 54 GAAITVVAPT-VSAEINEWEAKGQLRVKRKKVGE----EDLLNVFFIVVATNDQAVNKFVKQHIKNDQLVNMASSFSDGN 128 (223)
T ss_dssp CCCEEEECSS-CCHHHHHHHHTTSCEEECSCCCG----GGSSSCSEEEECCCCTHHHHHHHHHSCTTCEEEC-----CCS
T ss_pred CCEEEEECCC-CCHHHHHHHHcCCcEEEECCCCH----hHhCCCCEEEECCCCHHHHHHHHHHHhCCCEEEEeCCcccCe
Confidence 4566666643 3345666666666665433 222 235679998877665555666666666899998888877766
Q ss_pred cc
Q 022615 197 II 198 (294)
Q Consensus 197 ~~ 198 (294)
++
T Consensus 129 f~ 130 (223)
T 3dfz_A 129 IQ 130 (223)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 110
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=66.31 E-value=29 Score=27.94 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHhCCeEEe--cchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHH-hhcCCCCCceEEEee
Q 022615 22 PMWLVIKFLHRAADLTLV--PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR-LSNGEPDKPLIVHVG 98 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~--~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~G 98 (294)
.+.-..+.+-+.+|.|+. ..+...+.+.++- .+-|| |+-|-+..+|...-.+...- ...+.-+...|.|+|
T Consensus 89 sl~DTarvls~~~D~iviR~~~~~~~~~la~~~-----~vPVI-Nag~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vG 162 (308)
T 1ml4_A 89 SLRDTIKTVEQYCDVIVIRHPKEGAARLAAEVA-----EVPVI-NAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLG 162 (308)
T ss_dssp CHHHHHHHHTTTCSEEEEEESSTTHHHHHHHTC-----SSCEE-EEEETTSCCHHHHHHHHHHHHHHSSCSSSEEEEEES
T ss_pred CHHHHHHHHHHhCcEEEEecCChhHHHHHHHhC-----CCCEE-eCccCCccCcHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 345566777778898887 3445555555543 23344 55554445554322221111 112222457899999
Q ss_pred cccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC-CCCcc
Q 022615 99 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLG 173 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~-~e~~~ 173 (294)
......-..-++.++..+ ++++.+++...+ .+.+.+.++..+..+. -.+++.+.+..||++....+ .|.+|
T Consensus 163 D~~~~rva~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~---~~~d~~eav~~aDvvyt~~~q~er~~ 236 (308)
T 1ml4_A 163 DLKYGRTVHSLAEALTFY-DVELYLISPELLRMPRHIVEELREKGMKVV---ETTTLEDVIGKLDVLYVTRIQKERFP 236 (308)
T ss_dssp CTTTCHHHHHHHHHGGGS-CEEEEEECCGGGCCCHHHHHHHHHTTCCEE---EESCTHHHHTTCSEEEECCCCGGGSS
T ss_pred CCCcCchHHHHHHHHHHC-CCEEEEECCccccCCHHHHHHHHHcCCeEE---EEcCHHHHhcCCCEEEECCccccccC
Confidence 875545677888888888 799999985322 1223333333232111 11567788999999987665 23344
No 111
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=66.14 E-value=16 Score=30.76 Aligned_cols=97 Identities=8% Similarity=-0.062 Sum_probs=54.5
Q ss_pred CCceEEEeeccccc-ccHHHHHHHHHhCCCcEEEE-EcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc-------C
Q 022615 90 DKPLIVHVGRLGVE-KSLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS-------G 160 (294)
Q Consensus 90 ~~~~i~~~G~~~~~-k~~~~l~~~~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~-------a 160 (294)
++..++.+|.-... -| ...+.++...+++.++- +-+ ...+..++..+..++. ......++.+++.. .
T Consensus 36 ~~~rvgiiG~G~~~~ig-~~h~~~~~~~~~~~lva~v~d-~~~~~a~~~a~~~g~~--~~~~~~~~~~ll~~~~~~~~~v 111 (417)
T 3v5n_A 36 KRIRLGMVGGGSGAFIG-AVHRIAARLDDHYELVAGALS-STPEKAEASGRELGLD--PSRVYSDFKEMAIREAKLKNGI 111 (417)
T ss_dssp CCEEEEEESCC--CHHH-HHHHHHHHHTSCEEEEEEECC-SSHHHHHHHHHHHTCC--GGGBCSCHHHHHHHHHHCTTCC
T ss_pred CcceEEEEcCCCchHHH-HHHHHHHhhCCCcEEEEEEeC-CCHHHHHHHHHHcCCC--cccccCCHHHHHhcccccCCCC
Confidence 34567777743200 11 23345566677777663 322 3334444444433321 00123567777776 8
Q ss_pred CEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 161 DVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 161 d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
|+++..+....-.-.+.+++..|++|++-+
T Consensus 112 D~V~I~tp~~~H~~~~~~al~aGkhVl~EK 141 (417)
T 3v5n_A 112 EAVAIVTPNHVHYAAAKEFLKRGIHVICDK 141 (417)
T ss_dssp SEEEECSCTTSHHHHHHHHHTTTCEEEEES
T ss_pred cEEEECCCcHHHHHHHHHHHhCCCeEEEEC
Confidence 998887655544556788999999999854
No 112
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=65.79 E-value=8.7 Score=31.24 Aligned_cols=85 Identities=9% Similarity=-0.099 Sum_probs=52.2
Q ss_pred CceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc---CCEEEeec
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPS 167 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~---ad~~l~ps 167 (294)
...++.+|--. -+....+.++...++++++-+.+... ...++.. ..++.+++.. .|+++..+
T Consensus 25 ~~rvgiiG~G~--ig~~~~~~~l~~~~~~~lvav~d~~~--------~~~g~~~-----~~~~~~ll~~~~~vD~V~i~t 89 (330)
T 4ew6_A 25 PINLAIVGVGK--IVRDQHLPSIAKNANFKLVATASRHG--------TVEGVNS-----YTTIEAMLDAEPSIDAVSLCM 89 (330)
T ss_dssp CEEEEEECCSH--HHHHTHHHHHHHCTTEEEEEEECSSC--------CCTTSEE-----ESSHHHHHHHCTTCCEEEECS
T ss_pred CceEEEEecCH--HHHHHHHHHHHhCCCeEEEEEEeCCh--------hhcCCCc-----cCCHHHHHhCCCCCCEEEEeC
Confidence 45677777421 12224677788888888765544321 1224432 2456666665 89888876
Q ss_pred CCCCcchHHHHHHhcCCCEEeec
Q 022615 168 ESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
....-...+..|+..|++|++-+
T Consensus 90 p~~~H~~~~~~al~aGkhVl~EK 112 (330)
T 4ew6_A 90 PPQYRYEAAYKALVAGKHVFLEK 112 (330)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECS
T ss_pred CcHHHHHHHHHHHHcCCcEEEeC
Confidence 54333455778999999999754
No 113
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=65.76 E-value=26 Score=23.13 Aligned_cols=110 Identities=16% Similarity=0.097 Sum_probs=61.3
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc---CCEEEeecCCC--CcchHHHHHHh---cCCCEEe
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSESE--TLGLVVLEAMS---SGIPVVG 188 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~---ad~~l~ps~~e--~~~~~~~Ea~a---~G~pvI~ 188 (294)
..+++|+.+.+. ...+...+...++.....-+.++....+.. .|++++-.... .-|..+++.+. .++|+|.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 456777775542 334444444444444443344666666653 58887754432 34555555543 3678765
Q ss_pred e-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 189 V-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 189 ~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
. .............. .+++..|-+.+++...|..++...
T Consensus 85 ~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 85 ISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHHHTT
T ss_pred EeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHHhcC
Confidence 4 33322221111122 268889999999999999887643
No 114
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=65.75 E-value=19 Score=25.85 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=25.6
Q ss_pred HHHHhcCCEEEeecC----CCCcchHHHH---HHhcCCCEEeec
Q 022615 154 SQAYASGDVFVMPSE----SETLGLVVLE---AMSSGIPVVGVR 190 (294)
Q Consensus 154 ~~~~~~ad~~l~ps~----~e~~~~~~~E---a~a~G~pvI~~~ 190 (294)
.+.+..||++|.-.. .+.-+++.+| |.+.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 588999999887522 1233455555 578999999853
No 115
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=65.63 E-value=40 Score=25.29 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=96.4
Q ss_pred EEEeecccccccHHHHHHHHHhC--C-CcEEEEEcCCccHHHHHhhhcCC-------------------CeEEEecccch
Q 022615 94 IVHVGRLGVEKSLDFLKRVMDRL--P-EARIAFIGDGPYREELEKMFTGM-------------------PAVFTGMLLGE 151 (294)
Q Consensus 94 i~~~G~~~~~k~~~~l~~~~~~~--~-~~~l~i~G~~~~~~~~~~~~~~~-------------------~v~~~g~~~~~ 151 (294)
--++|+-...||+-.+.+.-+++ | .-.-++-|-......+.-.-+.. ...++.-.-+.
T Consensus 200 nrwigrtttwkgfyqmfdfhekflkpagkstvmeglerspafiaikekgipyeyygnreidkmnlapnqpaqildcyins 279 (401)
T 1xv5_A 200 NRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERSPAFIAIKEKGIPYEYYGNREIDKMNLAPNQPAQILDCYINS 279 (401)
T ss_dssp EEEECCSCGGGCHHHHHHHHHHTTTTTTCEEEEECCCCSHHHHHHHHTTCCEEEECGGGGGGCCCSSSCCEEEESCCCHH
T ss_pred hhhhcccchhHhHHHHhhHHHHhcCccchhhhhhhhhcCCceEEEcccCCchhhcCcchhhhhcCCCCCcchhhhheecH
Confidence 45899999999999998888776 2 23344445322222111111111 23444444457
Q ss_pred hHHHHHhcCCEEEeecC------CCCcchHHHHHHhcCCCEEeecC---------CCcccccccCCCCcceeecCCCCHH
Q 022615 152 ELSQAYASGDVFVMPSE------SETLGLVVLEAMSSGIPVVGVRA---------GGIPDIIPEDQDGKIGYLFNPGDLD 216 (294)
Q Consensus 152 ~~~~~~~~ad~~l~ps~------~e~~~~~~~Ea~a~G~pvI~~~~---------~~~~e~~~~~~~~~~g~~~~~~d~~ 216 (294)
++.+-++.+.+....|. ..+....-+|--|||+..+-... ...+ +. .+...-+.++.+|.+
T Consensus 280 emlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntp-lt---shdsgiiwfdendme 355 (401)
T 1xv5_A 280 EMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTP-LT---SHDSGIIWFDENDME 355 (401)
T ss_dssp HHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCB-GG---GSCCSCEEECTTCHH
T ss_pred HHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCc-cc---ccCCceEEecCCchH
Confidence 88899999988877654 23567788999999976664321 1111 11 233344568888999
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHH
Q 022615 217 DCLSKLEPLLYNQELRETMGQAARQEM 243 (294)
Q Consensus 217 ~l~~~i~~ll~~~~~~~~~~~~~~~~~ 243 (294)
+-.+.|.++-.|+..+.+-++.+++++
T Consensus 356 stferikelssdralydrerekayefl 382 (401)
T 1xv5_A 356 STFERIKELSSDRALYDREREKAYEFL 382 (401)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 999999999999999998888888886
No 116
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=65.23 E-value=22 Score=29.24 Aligned_cols=90 Identities=18% Similarity=0.092 Sum_probs=54.0
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCC-eEEEecccchhHHHHHhcC--CEEEeecC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMP-AVFTGMLLGEELSQAYASG--DVFVMPSE 168 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~-v~~~g~~~~~~~~~~~~~a--d~~l~ps~ 168 (294)
..++.+|--. -+...++.++...+++.++-+-+ ...+..++..+..+ +. ..+++.+++... |+++..+.
T Consensus 6 ~rigiIG~G~--~g~~~~~~~l~~~~~~~l~av~d-~~~~~~~~~a~~~~~~~-----~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGA--QMQENLLPSLLQMQDIRIVAACD-SDLERARRVHRFISDIP-----VLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSH--HHHHTHHHHHHTCTTEEEEEEEC-SSHHHHGGGGGTSCSCC-----EESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCH--HHHHHHHHHHHhCCCcEEEEEEc-CCHHHHHHHHHhcCCCc-----ccCCHHHHhcCCCCCEEEEcCC
Confidence 4466666321 12223667778888888764332 23445555555432 22 125677778755 88887664
Q ss_pred CCCcchHHHHHHhcCCCEEee
Q 022615 169 SETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
...-.-.+.+++..|++|++-
T Consensus 78 ~~~H~~~~~~al~aGkhVl~E 98 (359)
T 3m2t_A 78 PQLHFEMGLLAMSKGVNVFVE 98 (359)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC
T ss_pred cHHHHHHHHHHHHCCCeEEEE
Confidence 333344567899999999974
No 117
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=65.17 E-value=26 Score=22.84 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=57.2
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh-----cCCCEEeec
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS-----SGIPVVGVR 190 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a-----~G~pvI~~~ 190 (294)
++.++.+.+. ...+.......+......-+..+....+. ..|++++-... +.-|..+++.+. ..+|+|.-.
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEE
Confidence 4555655432 23344444433433333333344444443 36888775443 334556666664 357876542
Q ss_pred -CCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 191 -AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 191 -~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.... .+.+ +.|..+++..|.+.+++...+..++.
T Consensus 83 ~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 83 AFAMKGDEERIR---EGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp ------CHHHHH---HHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHH---hCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 2221 2222 34677889999999999999988764
No 118
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=65.08 E-value=31 Score=23.70 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=60.8
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEe-cccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh-----cCCCEE
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTG-MLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS-----SGIPVV 187 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a-----~G~pvI 187 (294)
+.++.|+-+.+. ...+.......++.... .-+..+..+.++. .|++++--.. +--|.-+++.+- ..+|||
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI 91 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVL 91 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEE
Confidence 456666665432 33344444433321111 1122344444433 5787775442 334666777663 468887
Q ss_pred e-ecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 188 G-VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 188 ~-~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
. |..+.........+.|-.+++..|-+.+++.++|.+++.
T Consensus 92 ~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 92 MITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp EEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 5 333332222211156788999999999999999988763
No 119
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=64.84 E-value=28 Score=23.15 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=58.4
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh---cCCCEEee-c
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 190 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~-~ 190 (294)
.+++++.+.+. ...+...+...+......-+..+....+. ..|++++-... +.-|..+++.+. .++|+|.- .
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTG 83 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEec
Confidence 35566665432 23344444333333332223345555444 35777764432 233455555543 46777653 3
Q ss_pred CCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 191 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 191 ~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
...........+.|..+++..|.+.+++..+|..++.
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 84 YASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 3322211111145778999999999999999988764
No 120
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=64.83 E-value=31 Score=23.62 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=60.4
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCe--EEEecccchhHHHHHh-----------cCCEEEeecC-CCCcchHHHHHHhc-
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPA--VFTGMLLGEELSQAYA-----------SGDVFVMPSE-SETLGLVVLEAMSS- 182 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v--~~~g~~~~~~~~~~~~-----------~ad~~l~ps~-~e~~~~~~~Ea~a~- 182 (294)
.+++|+.+.+. ...+...+...+. .....-+.++..+.+. ..|++++-.. .+.-|..+++.+..
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~ 84 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKEN 84 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 46666665432 3344444443322 2223333366666663 3577776543 34446667766654
Q ss_pred ----CCCEEee-cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 183 ----GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 183 ----G~pvI~~-~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
++|+|.- ..... .+.+ +.|..+++..|.+.+++.++|..+.
T Consensus 85 ~~~~~~pii~~t~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 85 PHTRRSPVVILTTTDDQREIQRCY---DLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred ccccCCCEEEEecCCCHHHHHHHH---HCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 5777654 33221 2233 4577889999999999999998873
No 121
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=64.46 E-value=31 Score=23.56 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=60.2
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCC--eEEEecccchhHHHHHh---------cCCEEEeecCC-CCcchHHHHHHh---
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMP--AVFTGMLLGEELSQAYA---------SGDVFVMPSES-ETLGLVVLEAMS--- 181 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~--v~~~g~~~~~~~~~~~~---------~ad~~l~ps~~-e~~~~~~~Ea~a--- 181 (294)
..+++|+.+.+. ...+...+...+ ..+...-+..+....+. ..|++++-... +.-|..+++.+.
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc
Confidence 356666665442 334444444332 12222223355556655 36888875443 233555666664
Q ss_pred --cCCCEEee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 182 --SGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 182 --~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
.++|||.- ............+.|-.+++..+.+.+++..+|..++
T Consensus 88 ~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 35677653 3322221111114577889999999999999988764
No 122
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=64.25 E-value=28 Score=28.01 Aligned_cols=138 Identities=14% Similarity=0.204 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhCCeEEe--cchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHH-HhhcCCCCCceEEEeec
Q 022615 23 MWLVIKFLHRAADLTLV--PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRW-RLSNGEPDKPLIVHVGR 99 (294)
Q Consensus 23 ~~~~~~~~~~~ad~ii~--~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~G~ 99 (294)
+.-..+.+-+.+|.|+. .++...+.+.++- ..+-|| |+-|-+..+|...-.+... +...+.-+...|.|+|.
T Consensus 88 l~DTarvls~~~D~iviR~~~~~~~~~la~~~----~~vPVI-Nag~G~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD 162 (310)
T 3csu_A 88 LADTISVISTYVDAIVMRHPQEGAARLATEFS----GNVPVL-NAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGD 162 (310)
T ss_dssp HHHHHHHHTTTCSEEEEEESSTTHHHHHHHHC----TTCCEE-EEEETTSCCHHHHHHHHHHHHHHHSCSSSCEEEEESC
T ss_pred HHHHHHHHHHhCCEEEEECCChhHHHHHHHhc----CCCCEE-cCccCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECC
Confidence 44456677778998887 3455556665543 023334 5555444555432221111 11112224578999998
Q ss_pred ccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 100 LGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
.....-..-++.++..++++++.+++...+ .+.+.+.++..+..+.- .+++.+.+..||++....+
T Consensus 163 ~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~---~~d~~eav~~aDvvyt~~~ 230 (310)
T 3csu_A 163 LKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSL---HSSIEEVMAEVDILYMTRV 230 (310)
T ss_dssp TTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEE---CSCGGGTTTTCSEEEECC-
T ss_pred CCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEE---EcCHHHHhcCCCEEEECCc
Confidence 755556788899999998899999985322 12233333322222111 1566678899999887655
No 123
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=64.14 E-value=13 Score=30.33 Aligned_cols=40 Identities=8% Similarity=0.000 Sum_probs=26.3
Q ss_pred hHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecC
Q 022615 152 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 152 ~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 191 (294)
+..+++..+|+++..+......-..-.++..|++||.+.-
T Consensus 71 ~~~~~~~~vDvV~~atp~~~~~~~a~~~l~aG~~VId~sp 110 (337)
T 1cf2_P 71 TVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGG 110 (337)
T ss_dssp EHHHHHHTCSEEEECCSTTHHHHHHHHHHHHTCCEEECTT
T ss_pred CHHHHhcCCCEEEECCCchhhHHHHHHHHHcCCEEEEecC
Confidence 4556678999998875433222334567788999887643
No 124
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=64.08 E-value=26 Score=28.16 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCe-EEEecccchhHHHHH-hcCCEEEeecCCCCcchHHHHHHhcCCC
Q 022615 108 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAY-ASGDVFVMPSESETLGLVVLEAMSSGIP 185 (294)
Q Consensus 108 ~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~-~~ad~~l~ps~~e~~~~~~~Ea~a~G~p 185 (294)
.+++++...++++++-+-+ ...+..++..+..++ .. ..++.+++ ..+|+++..+....-...+.+++..|++
T Consensus 15 ~~~~~l~~~~~~~~~~v~d-~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~gk~ 88 (325)
T 2ho3_A 15 HFIEAAHTSGEYQLVAIYS-RKLETAATFASRYQNIQL-----FDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKH 88 (325)
T ss_dssp HHHHHHHHTTSEEEEEEEC-SSHHHHHHHGGGSSSCEE-----ESCHHHHHTSSCSEEEECSCGGGHHHHHHHHHHTTCE
T ss_pred HHHHHHHhCCCeEEEEEEe-CCHHHHHHHHHHcCCCeE-----eCCHHHHhCCCCCEEEEeCChHHHHHHHHHHHHcCCc
Confidence 4566677777777764433 233444555554442 21 24566667 6789998877654445567789999999
Q ss_pred EEeec
Q 022615 186 VVGVR 190 (294)
Q Consensus 186 vI~~~ 190 (294)
|++-.
T Consensus 89 V~~EK 93 (325)
T 2ho3_A 89 VILEK 93 (325)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99854
No 125
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=64.06 E-value=54 Score=26.75 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=54.2
Q ss_pred CceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecC
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE 168 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~ 168 (294)
...++.+|.-.- -..+++++...++++++-+.+. ..+..++.....++. .+.....++.+++. .+|+++..+.
T Consensus 6 ~~~vgiiG~G~i---g~~~~~~l~~~~~~~lv~v~d~-~~~~~~~~a~~~~~~-~~~~~~~~~~~ll~~~~~D~V~i~tp 80 (362)
T 1ydw_A 6 QIRIGVMGCADI---ARKVSRAIHLAPNATISGVASR-SLEKAKAFATANNYP-ESTKIHGSYESLLEDPEIDALYVPLP 80 (362)
T ss_dssp CEEEEEESCCTT---HHHHHHHHHHCTTEEEEEEECS-SHHHHHHHHHHTTCC-TTCEEESSHHHHHHCTTCCEEEECCC
T ss_pred ceEEEEECchHH---HHHHHHHHhhCCCcEEEEEEcC-CHHHHHHHHHHhCCC-CCCeeeCCHHHHhcCCCCCEEEEcCC
Confidence 345666664211 1245667777788877644432 233344444433320 00011256777776 4899888765
Q ss_pred CCCcchHHHHHHhcCCCEEeec
Q 022615 169 SETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
...-...+.+++..|++|++-.
T Consensus 81 ~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 81 TSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp GGGHHHHHHHHHTTTCEEEECS
T ss_pred hHHHHHHHHHHHHCCCeEEEec
Confidence 4444455778999999999853
No 126
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=63.87 E-value=25 Score=28.54 Aligned_cols=78 Identities=17% Similarity=0.059 Sum_probs=48.6
Q ss_pred HHHHHHH-hCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCCcchHHHHHHhcCC
Q 022615 108 FLKRVMD-RLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGI 184 (294)
Q Consensus 108 ~l~~~~~-~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~~~~~~~Ea~a~G~ 184 (294)
..+.++. ..++++++-+-+ ...+..++..+..++. ....+++.+++.. .|+++..+....-...+.+++..|+
T Consensus 16 ~~~~~l~~~~~~~~l~av~d-~~~~~~~~~~~~~g~~---~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk 91 (344)
T 3mz0_A 16 EHINRITNKLSGAEIVAVTD-VNQEAAQKVVEQYQLN---ATVYPNDDSLLADENVDAVLVTSWGPAHESSVLKAIKAQK 91 (344)
T ss_dssp HHHHHHHHTCSSEEEEEEEC-SSHHHHHHHHHHTTCC---CEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHhhCCCcEEEEEEc-CCHHHHHHHHHHhCCC---CeeeCCHHHHhcCCCCCEEEECCCchhHHHHHHHHHHCCC
Confidence 3556666 678887764433 2334445554444420 1122567777776 8998887654444555778999999
Q ss_pred CEEee
Q 022615 185 PVVGV 189 (294)
Q Consensus 185 pvI~~ 189 (294)
+|++-
T Consensus 92 ~vl~E 96 (344)
T 3mz0_A 92 YVFCE 96 (344)
T ss_dssp EEEEC
T ss_pred cEEEc
Confidence 99974
No 127
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=63.37 E-value=8 Score=32.88 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=54.8
Q ss_pred CCceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeec
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPS 167 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps 167 (294)
+...|+++|--. -+...+++++...++++++-+-+. ..+..++..+..++.-.+.....++.+++. ..|+++..+
T Consensus 82 ~~irigiIG~G~--~g~~~~~~~l~~~~~~~lvav~d~-~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iat 158 (433)
T 1h6d_A 82 RRFGYAIVGLGK--YALNQILPGFAGCQHSRIEALVSG-NAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 158 (433)
T ss_dssp CCEEEEEECCSH--HHHHTHHHHTTTCSSEEEEEEECS-CHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred CceEEEEECCcH--HHHHHHHHHHhhCCCcEEEEEEcC-CHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcC
Confidence 445677777421 121245666777777777544332 233344444333321000001245556676 689988876
Q ss_pred CCCCcchHHHHHHhcCCCEEeec
Q 022615 168 ESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
....-...+.+++..|++|++-.
T Consensus 159 p~~~h~~~~~~al~aGk~Vl~EK 181 (433)
T 1h6d_A 159 PNSLHAEFAIRAFKAGKHVMCEK 181 (433)
T ss_dssp CGGGHHHHHHHHHHTTCEEEECS
T ss_pred CchhHHHHHHHHHHCCCcEEEcC
Confidence 55544556778999999999853
No 128
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=63.35 E-value=29 Score=22.78 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=45.5
Q ss_pred hhHHHHHhc--CCEEEeecCC-CCcchHHHHHHhc-----CCCEEee-cCCCc---ccccccCCCCcceeecCCCCHHHH
Q 022615 151 EELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS-----GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDC 218 (294)
Q Consensus 151 ~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a~-----G~pvI~~-~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l 218 (294)
.+....+.. .|++++-... +.-|..+++.+.. .+|+|.- ..... .+.+ +.|..+++..|.+.+++
T Consensus 39 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~l 115 (128)
T 1jbe_A 39 VDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAA---QAGASGYVVKPFTAATL 115 (128)
T ss_dssp HHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHH---HTTCSEEEESSCCHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHH---HhCcCceeecCCCHHHH
Confidence 455555543 4777765432 3345667777653 5677653 33222 2223 45778899999999999
Q ss_pred HHHHHHHh
Q 022615 219 LSKLEPLL 226 (294)
Q Consensus 219 ~~~i~~ll 226 (294)
.+.+..++
T Consensus 116 ~~~i~~~~ 123 (128)
T 1jbe_A 116 EEKLNKIF 123 (128)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998775
No 129
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=63.08 E-value=7.3 Score=26.13 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=34.4
Q ss_pred CcEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 118 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 118 ~~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+.+|+|.|.-. .++++++++...+-.+.+.++ +..|++|.....+..+.++-.|...|+|||.-+
T Consensus 13 G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVs--------kkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~ 78 (113)
T 2cok_A 13 NMKILTLGKLSRNKDEVKAMIEKLGGKLTGTAN--------KASLCISTKKEVEKMNKKMEEVKEANIRVVSED 78 (113)
T ss_dssp SCEEEECSCCSSCHHHHHHHHHHTTCEEESCST--------TCSEEECCHHHHHHCCHHHHHHHHTTCCEECTH
T ss_pred CCEEEEEecCCCCHHHHHHHHHHCCCEEcCccc--------cCccEEEECCCCCCCChHHHHHHHCCCcEEeHH
Confidence 44555555321 344455555544445555553 233444433222335678888888888888543
No 130
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=63.07 E-value=32 Score=23.16 Aligned_cols=112 Identities=8% Similarity=0.025 Sum_probs=63.7
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCe--EEEecccchhHHHHHhc-------CCEEEeecC-CCCcchHHHHHHhc-----
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPA--VFTGMLLGEELSQAYAS-------GDVFVMPSE-SETLGLVVLEAMSS----- 182 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v--~~~g~~~~~~~~~~~~~-------ad~~l~ps~-~e~~~~~~~Ea~a~----- 182 (294)
.+++|+.+.+. ...+...+...+. .....-+.++..+.+.. .|++++-.. .+.-|..+++.+..
T Consensus 10 ~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 89 (146)
T 3ilh_A 10 DSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPM 89 (146)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGG
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhc
Confidence 45666665442 3445555554443 33333334666666654 688887654 33445666665543
Q ss_pred --CCCEEeec-CCCcccccccCCCC-cceeecCCCCHHHHHHHHHHHhhChH
Q 022615 183 --GIPVVGVR-AGGIPDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYNQE 230 (294)
Q Consensus 183 --G~pvI~~~-~~~~~e~~~~~~~~-~~g~~~~~~d~~~l~~~i~~ll~~~~ 230 (294)
..|+|... .............+ ..+++..|-+.+++.++|........
T Consensus 90 ~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 90 KNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp TTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred cCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 56766543 22221111111345 67899999999999999999876543
No 131
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=62.92 E-value=20 Score=25.79 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=60.3
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHh---cCCCEEee-
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 189 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~- 189 (294)
..+++|+.+.+. ...+...+...+......-+.++..+.+.. .|++++-.. .+.-|..+++.+. .++|||.-
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt 86 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLT 86 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEe
Confidence 345666665432 233444444333333222233555555544 477776433 2334556665553 46777653
Q ss_pred cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 ~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
..... .+.+ ..|..+++..|.+.+++..+|..++..
T Consensus 87 ~~~~~~~~~~a~---~~Ga~~~l~KP~~~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 87 GYASIATAVQAV---KDGADNYLAKPANVESILAALQTNASE 125 (184)
T ss_dssp SSCCHHHHHHHH---HHTCSEEEESSCCHHHHHHHTSTTHHH
T ss_pred CCCCHHHHHHHH---HhCHHHheeCCCCHHHHHHHHHHHHHH
Confidence 33322 2233 457788999999999999999887653
No 132
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=62.78 E-value=32 Score=23.09 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=60.6
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHhc-----CCCEEe
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 188 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a~-----G~pvI~ 188 (294)
..+++|+.+.+. ...+...+...++.+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|||.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 86 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVM 86 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEE
Confidence 456666665432 334444444334433333333566666554 466666443 23345566666643 467665
Q ss_pred e-cCCC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 189 V-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 189 ~-~~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
- .... ..+.+ ..|..+++..+.+.+++.+.|..++.
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 87 LTAKNAPDAKMIGL---QEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EECTTCCCCSSTTG---GGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHH---hcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3 3322 22333 45667889999999999999988764
No 133
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=62.70 E-value=30 Score=22.71 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=60.5
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh---cCCCEEee-
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV- 189 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~- 189 (294)
+.++.++.+.+. ...+.......+......-+.++....+.. .|++++-... +.-|..+++.+. .+.|+|..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVIT 82 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 345666665443 233444443333333333333555555554 4677764432 233455555553 46787653
Q ss_pred cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 ~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
............+.|..+++..|.+.+++.+.+..++..
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 83 GHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp CTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 333221111111457789999999999999999887653
No 134
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=62.15 E-value=15 Score=26.13 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=38.6
Q ss_pred HHHhcCCEEEeecCCCCcchHHHH---HHhcCCCEEeecCC----CcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 155 QAYASGDVFVMPSESETLGLVVLE---AMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 155 ~~~~~ad~~l~ps~~e~~~~~~~E---a~a~G~pvI~~~~~----~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
+.+..||+++.-.. +.-+.+.+| |.+.|+||++--.+ ...-++.-..++..-.+....+ +++.+.|.+++.
T Consensus 64 ~~i~~aD~vvA~l~-~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~~ 141 (152)
T 4fyk_A 64 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYFE 141 (152)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHHC
T ss_pred HHHHHCCEEEEeCC-CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHHH
Confidence 67899999998543 333344444 67899999983221 2222331101112222333334 777777777654
No 135
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=62.08 E-value=29 Score=22.47 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=56.7
Q ss_pred EEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh--cCCCEEe-ecCC
Q 022615 120 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--SGIPVVG-VRAG 192 (294)
Q Consensus 120 ~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a--~G~pvI~-~~~~ 192 (294)
++.++.+.+ ....+...+...+......-+..+....+.. .|++++-... +.-|..+++.+. .+.|+|. +...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 455665443 2233444443333333222233555555543 5887765443 333555666664 3567654 3333
Q ss_pred CcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 193 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 193 ~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
.........+.|..+++..|.+.+++...+..++
T Consensus 84 ~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 84 DRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp CHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 2211111114467788999999999999987765
No 136
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=62.05 E-value=31 Score=23.18 Aligned_cols=110 Identities=12% Similarity=0.085 Sum_probs=58.5
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCC-cchHHHHHHh---cCCCEEee-c
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESET-LGLVVLEAMS---SGIPVVGV-R 190 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~-~~~~~~Ea~a---~G~pvI~~-~ 190 (294)
.+++++.+.+ ....+...+...++.....-+.++....+.. .|++++-. ..+ -|..+++.+. .++|+|.- .
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSA 83 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEEC
Confidence 4556665543 2334444444444443333333555555544 47776654 322 2344444442 35777653 3
Q ss_pred CCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 191 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 191 ~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
.............|..+++..+.+.+++...|..++...
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 84 YVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp CCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 322211111113466788899999999999999988653
No 137
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=61.24 E-value=35 Score=23.12 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=61.3
Q ss_pred CCcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHh-------cCCC
Q 022615 117 PEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-------SGIP 185 (294)
Q Consensus 117 ~~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a-------~G~p 185 (294)
...++.|+.+.+. ...+...+...+......-+.++..+.+.. .|++++-.. .+.-|..+++.+. ..+|
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~p 92 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTP 92 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCe
Confidence 3456777765442 344455555444333333333555555543 588877544 3334566666663 2367
Q ss_pred EEeecCCCccccc-ccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 186 VVGVRAGGIPDII-PEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 186 vI~~~~~~~~e~~-~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
+|........+.. ...+.|-.+++..|.+.+++.++|..+...
T Consensus 93 ii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 93 VVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 7664332222221 111457788999999999999999988643
No 138
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=60.73 E-value=33 Score=22.67 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=18.7
Q ss_pred CCceEEEeecccccccHHHHHHHHHhC---------CCcEEEEEcCCc
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRL---------PEARIAFIGDGP 128 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~---------~~~~l~i~G~~~ 128 (294)
....|++.|.+.... -+.+.+.++.+ .+..++|+|..+
T Consensus 34 ~G~~~v~TG~l~~~~-R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~ 80 (109)
T 2k6g_A 34 EGLIFVITGVLESIE-RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDS 80 (109)
T ss_dssp TTCEEEEESBCSSCC-HHHHHHHHHHTTCEEESSCCTTCCEEEECBCC
T ss_pred CCCEEEEeeeCCCCC-HHHHHHHHHHcCCEeeCcccCCceEEEECCCC
Confidence 345677777774311 12333333332 345666776543
No 139
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=60.62 E-value=27 Score=23.65 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=40.7
Q ss_pred cCCEEEeecCC-CCcchHHHHHHh---cCCCEEee-cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 159 SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 159 ~ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~-~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
..|++++-... +.-|..+++.+. .++|||.- ..... .+.+ +.|..+++..+.+.+++..+|..++..
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAM---RAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHH---TTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHH---HhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 45776664432 223444444443 35677653 32222 2233 567788999999999999999988753
No 140
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=60.11 E-value=34 Score=27.36 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHhCCeEEec--chhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHH-hhcCCCCCceEEEee
Q 022615 22 PMWLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR-LSNGEPDKPLIVHVG 98 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~G 98 (294)
.+.-..+.+-+.+|.|+.= ++...+.+.++- .+-|| |+-+.+..+|...-.+...- ...+.-+...|.|+|
T Consensus 83 sl~DTarvls~~~D~iviR~~~~~~~~~la~~~-----~vPVI-NaG~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vG 156 (299)
T 1pg5_A 83 NLADTIRMLNNYSDGIVMRHKYDGASRFASEIS-----DIPVI-NAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLG 156 (299)
T ss_dssp CHHHHHHHHHHHCSEEEEEESSBTHHHHHHHHC-----SSCEE-EEEETTTBCHHHHHHHHHHHHHHHSCSTTCEEEEEE
T ss_pred CHHHHHHHHHHhCCEEEEeCCChhHHHHHHHhC-----CCCEE-eCCCCCCcCcHHHHHHHHHHHHHhCCcCCcEEEEEC
Confidence 4556677777889988873 455556665543 23344 55455555554322211111 111222557899999
Q ss_pred cccccccHHHHHHHHHhCCCcEEEEEcCCccH--HHHHhhhcCCC--eEEEecccchhHHHHHhcCCEEEeecC
Q 022615 99 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR--EELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
......-..-++.++..++++++.+++...+. +.+ .+..+ +.+. +++.+.+..||++....+
T Consensus 157 D~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~---~~~~g~~~~~~-----~d~~eav~~aDvvyt~~~ 222 (299)
T 1pg5_A 157 DLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEI---LDELNYPVKEV-----ENPFEVINEVDVLYVTRI 222 (299)
T ss_dssp CCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHH---HTTCCSCEEEE-----SCGGGTGGGCSEEEEECC
T ss_pred CCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHH---HHHcCCeEEEe-----CCHHHHhcCCCEEEeCCc
Confidence 87555567888899999988999999863321 122 22222 2222 556678899999988765
No 141
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=60.00 E-value=27 Score=28.38 Aligned_cols=94 Identities=13% Similarity=0.033 Sum_probs=55.7
Q ss_pred CCCceEEEeecccccccHHHHHHHHHhC-CCcEEEEEcCCccHHHHHhhhcCCCe-EEEecccchhHHHHHh--cCCEEE
Q 022615 89 PDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYA--SGDVFV 164 (294)
Q Consensus 89 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~-~~~~l~i~G~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~--~ad~~l 164 (294)
.+...++.+|--.. .-...+.++... ++++++-+-+ ...+..++..+..++ . ...++.+++. ..|+++
T Consensus 16 ~~~irvgiIG~G~~--~g~~~~~~l~~~~~~~~lvav~d-~~~~~~~~~a~~~~~~~-----~~~~~~~ll~~~~vD~V~ 87 (340)
T 1zh8_A 16 LRKIRLGIVGCGIA--ARELHLPALKNLSHLFEITAVTS-RTRSHAEEFAKMVGNPA-----VFDSYEELLESGLVDAVD 87 (340)
T ss_dssp CCCEEEEEECCSHH--HHHTHHHHHHTTTTTEEEEEEEC-SSHHHHHHHHHHHSSCE-----EESCHHHHHHSSCCSEEE
T ss_pred CCceeEEEEecCHH--HHHHHHHHHHhCCCceEEEEEEc-CCHHHHHHHHHHhCCCc-----ccCCHHHHhcCCCCCEEE
Confidence 34566777774310 112356677777 7787754443 223444444443332 1 1256777787 478888
Q ss_pred eecCCCCcchHHHHHHhcCCCEEeec
Q 022615 165 MPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
..+....-...+.+++..|++|++-+
T Consensus 88 i~tp~~~H~~~~~~al~aGkhVl~EK 113 (340)
T 1zh8_A 88 LTLPVELNLPFIEKALRKGVHVICEK 113 (340)
T ss_dssp ECCCGGGHHHHHHHHHHTTCEEEEES
T ss_pred EeCCchHHHHHHHHHHHCCCcEEEeC
Confidence 87654443455778999999999853
No 142
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=59.95 E-value=16 Score=29.52 Aligned_cols=73 Identities=11% Similarity=0.027 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCcEEEEE-cCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCE
Q 022615 108 FLKRVMDRLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 186 (294)
Q Consensus 108 ~l~~~~~~~~~~~l~i~-G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pv 186 (294)
.+++++.+.+++.++.+ ...... +.. .++... +++.+++..+|+++..+....---.+..++..|++|
T Consensus 17 ~~~~~l~~~~~~elvav~d~~~~~----~~~--~gv~~~-----~d~~~ll~~~DvViiatp~~~h~~~~~~al~aG~~V 85 (320)
T 1f06_A 17 SVEKLIAKQPDMDLVGIFSRRATL----DTK--TPVFDV-----ADVDKHADDVDVLFLCMGSATDIPEQAPKFAQFACT 85 (320)
T ss_dssp HHHHHHTTCSSEEEEEEEESSSCC----SSS--SCEEEG-----GGGGGTTTTCSEEEECSCTTTHHHHHHHHHTTTSEE
T ss_pred HHHHHHhcCCCCEEEEEEcCCHHH----hhc--CCCcee-----CCHHHHhcCCCEEEEcCCcHHHHHHHHHHHHCCCEE
Confidence 46677777777776543 332221 111 233321 333344578999998765433334466888999999
Q ss_pred EeecC
Q 022615 187 VGVRA 191 (294)
Q Consensus 187 I~~~~ 191 (294)
|++..
T Consensus 86 v~ekp 90 (320)
T 1f06_A 86 VDTYD 90 (320)
T ss_dssp ECCCC
T ss_pred EECCC
Confidence 98754
No 143
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=59.86 E-value=42 Score=27.46 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=53.1
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 169 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~ 169 (294)
..++.+|--.- | ...+.++...++++++-+-+.. .+..+ .....++. ..+++.+++. ..|+++..+..
T Consensus 6 ~~vgiiG~G~~--g-~~~~~~l~~~~~~~l~av~d~~-~~~~~-~a~~~g~~-----~~~~~~~ll~~~~~D~V~i~tp~ 75 (359)
T 3e18_A 6 YQLVIVGYGGM--G-SYHVTLASAADNLEVHGVFDIL-AEKRE-AAAQKGLK-----IYESYEAVLADEKVDAVLIATPN 75 (359)
T ss_dssp EEEEEECCSHH--H-HHHHHHHHTSTTEEEEEEECSS-HHHHH-HHHTTTCC-----BCSCHHHHHHCTTCCEEEECSCG
T ss_pred CcEEEECcCHH--H-HHHHHHHHhCCCcEEEEEEcCC-HHHHH-HHHhcCCc-----eeCCHHHHhcCCCCCEEEEcCCc
Confidence 45666663211 1 2455677778888876443322 22222 23444442 2367778887 67988876654
Q ss_pred CCcchHHHHHHhcCCCEEeec
Q 022615 170 ETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
..-...+.+++..|++|++-+
T Consensus 76 ~~h~~~~~~al~aGkhVl~EK 96 (359)
T 3e18_A 76 DSHKELAISALEAGKHVVCEK 96 (359)
T ss_dssp GGHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHCCCCEEeeC
Confidence 444455678999999999753
No 144
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=59.70 E-value=20 Score=29.32 Aligned_cols=90 Identities=7% Similarity=0.031 Sum_probs=54.6
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHH--hcCCEEEeecCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAY--ASGDVFVMPSES 169 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~--~~ad~~l~ps~~ 169 (294)
..++.+|--. -| ...+.++...++++++-+-+ ...+..++..+..++. ..+++.+++ ...|+++..+..
T Consensus 6 ~~vgiiG~G~--~g-~~~~~~l~~~~~~~lvav~d-~~~~~~~~~~~~~g~~-----~~~~~~~~l~~~~~D~V~i~tp~ 76 (354)
T 3db2_A 6 VGVAAIGLGR--WA-YVMADAYTKSEKLKLVTCYS-RTEDKREKFGKRYNCA-----GDATMEALLAREDVEMVIITVPN 76 (354)
T ss_dssp EEEEEECCSH--HH-HHHHHHHTTCSSEEEEEEEC-SSHHHHHHHHHHHTCC-----CCSSHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEEccCH--HH-HHHHHHHHhCCCcEEEEEEC-CCHHHHHHHHHHcCCC-----CcCCHHHHhcCCCCCEEEEeCCh
Confidence 4466666421 11 34677888888888764433 2333444444333332 136777888 458888887655
Q ss_pred CCcchHHHHHHhcCCCEEeec
Q 022615 170 ETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
..-...+.+++..|++|++-+
T Consensus 77 ~~h~~~~~~al~~gk~vl~EK 97 (354)
T 3db2_A 77 DKHAEVIEQCARSGKHIYVEK 97 (354)
T ss_dssp TSHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCEEEEcc
Confidence 444555778999999999754
No 145
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=59.57 E-value=33 Score=28.00 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=54.2
Q ss_pred CceEEEeecccccccHHHHHHHHHhC-CCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeec
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPS 167 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~-~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps 167 (294)
...++++|--.- + ...+.++... +++.++-+-+ ...+..++..+..++.. .+++.+++. .+|+++..+
T Consensus 13 ~~rvgiiG~G~~--g-~~~~~~l~~~~~~~~lvav~d-~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~D~V~i~t 83 (354)
T 3q2i_A 13 KIRFALVGCGRI--A-NNHFGALEKHADRAELIDVCD-IDPAALKAAVERTGARG-----HASLTDMLAQTDADIVILTT 83 (354)
T ss_dssp CEEEEEECCSTT--H-HHHHHHHHHTTTTEEEEEEEC-SSHHHHHHHHHHHCCEE-----ESCHHHHHHHCCCSEEEECS
T ss_pred cceEEEEcCcHH--H-HHHHHHHHhCCCCeEEEEEEc-CCHHHHHHHHHHcCCce-----eCCHHHHhcCCCCCEEEECC
Confidence 455666664211 1 2355777777 7888764433 23344444444434422 256667776 789988866
Q ss_pred CCCCcchHHHHHHhcCCCEEeec
Q 022615 168 ESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 168 ~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
....-...+.+++..|++|++-+
T Consensus 84 p~~~h~~~~~~al~~gk~v~~EK 106 (354)
T 3q2i_A 84 PSGLHPTQSIECSEAGFHVMTEK 106 (354)
T ss_dssp CGGGHHHHHHHHHHTTCEEEECS
T ss_pred CcHHHHHHHHHHHHCCCCEEEeC
Confidence 54444445778999999999753
No 146
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=59.50 E-value=34 Score=22.30 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=58.7
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh---cCCCEEe-ecC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVG-VRA 191 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~-~~~ 191 (294)
++.++.+.+. ...+.......+......-+.++....+. ..|++++-... +.-|..+++.+. .+.|+|. +..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEcc
Confidence 5666665432 33444444444443332223345444443 46888775443 223445555553 4677765 333
Q ss_pred CCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 192 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 192 ~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
............|..+++..|.+.+++...+..++.
T Consensus 85 ~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 85 GELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp CCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred CchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 322111111134667888999999999999988764
No 147
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=59.22 E-value=6.2 Score=28.88 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=38.3
Q ss_pred HHhcCCEEEeecCCCCcc--hHHHHHHhcCCCEEeecCCCc-ccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 156 AYASGDVFVMPSESETLG--LVVLEAMSSGIPVVGVRAGGI-PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 156 ~~~~ad~~l~ps~~e~~~--~~~~Ea~a~G~pvI~~~~~~~-~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
+...||.+|...- ++| ..+.|++..|+||++-+.... ..++. ......+.-.+|++++.+.|.+.+.
T Consensus 104 m~~~sda~IvlpG--g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~---~~~~~~i~~~~~~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 104 NALSSNVLVAVGM--GPGTAAEVALALKAKKPVVLLGTQPEAEKFFT---SLDAGLVHVAADVAGAIAAVKQLLA 173 (176)
T ss_dssp CGGGCSEEEEESC--CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHH---HHCTTTEEEESSHHHHHHHHHHHHH
T ss_pred HHHhCCEEEEecC--CccHHHHHHHHHHhCCcEEEEcCcccccccCC---hhhcCeEEEcCCHHHHHHHHHHHHH
Confidence 4455776665322 333 336888999999998765211 11221 1111223333589999888887764
No 148
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=58.39 E-value=16 Score=23.31 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=9.9
Q ss_pred chHHHHHHhcCCCEEe
Q 022615 173 GLVVLEAMSSGIPVVG 188 (294)
Q Consensus 173 ~~~~~Ea~a~G~pvI~ 188 (294)
|.++-.|...|+|||.
T Consensus 55 gsK~~kA~~lgI~Ii~ 70 (92)
T 1l7b_A 55 GSKLEKARALGVPTLT 70 (92)
T ss_dssp STTHHHHHCSSSCCEE
T ss_pred ChHHHHHHHcCCcEEe
Confidence 4566666666666664
No 149
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=57.92 E-value=67 Score=26.09 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=52.5
Q ss_pred CceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE 168 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~ 168 (294)
...++.+|--. -+....+.++...++++++-+-+. ..+..++ ....+. ..+++.+++.. .|+++..+.
T Consensus 7 ~~rvgiiG~G~--~g~~~~~~~~~~~~~~~l~av~d~-~~~~~~~--~~~~~~-----~~~~~~~ll~~~~vD~V~i~tp 76 (352)
T 3kux_A 7 KIKVGLLGYGY--ASKTFHAPLIMGTPGLELAGVSSS-DASKVHA--DWPAIP-----VVSDPQMLFNDPSIDLIVIPTP 76 (352)
T ss_dssp CEEEEEECCSH--HHHHTHHHHHHTSTTEEEEEEECS-CHHHHHT--TCSSCC-----EESCHHHHHHCSSCCEEEECSC
T ss_pred CceEEEECCCH--HHHHHHHHHHhhCCCcEEEEEECC-CHHHHHh--hCCCCc-----eECCHHHHhcCCCCCEEEEeCC
Confidence 45577766421 111235677778888887644332 2223321 111221 22667788876 788888765
Q ss_pred CCCcchHHHHHHhcCCCEEee
Q 022615 169 SETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
...-...+.+++..|++|++-
T Consensus 77 ~~~H~~~~~~al~aGkhV~~E 97 (352)
T 3kux_A 77 NDTHFPLAQSALAAGKHVVVD 97 (352)
T ss_dssp TTTHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHHHHHHCCCcEEEE
Confidence 444445577899999999974
No 150
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=57.74 E-value=42 Score=22.90 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=63.8
Q ss_pred CcEEEEEcCCc-cHHHHHhhhcC-CCeEEEec-ccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh---cCCCEEe
Q 022615 118 EARIAFIGDGP-YREELEKMFTG-MPAVFTGM-LLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVG 188 (294)
Q Consensus 118 ~~~l~i~G~~~-~~~~~~~~~~~-~~v~~~g~-~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~ 188 (294)
..+++|+.+.+ ....+...+.. .++...+. -+.++....+.. .|++++-... +.-|..+++.+. .++|||.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILI 84 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 45677776554 33455555555 45555432 233555565554 4777764432 333555555543 3678765
Q ss_pred e-cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 189 V-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 189 ~-~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
. ..... ...+ ..|..+++..+.+.+++...|..++..
T Consensus 85 ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 85 FTMHQGSAFALKAF---EAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp EESCCSHHHHHHHH---HTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred EECCCCHHHHHHHH---HCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 4 33221 2223 457788899999999999999988764
No 151
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=57.23 E-value=40 Score=22.52 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=59.1
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecC-CCCcchHHHHHHh-----cCCCEEee
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV 189 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~-~e~~~~~~~Ea~a-----~G~pvI~~ 189 (294)
.+++|+.+.+ ....+...+... ......-+.++..+.+. ..|++++-.. .+.-|..+++.+. .++|+|.-
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 82 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEE
Confidence 4566666543 234444444443 33333333355555543 3578777544 2334555666654 46787653
Q ss_pred -cCC---CcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 -RAG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 -~~~---~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
... ...+.+ ..|..+++..|.+.+++..+|..++..
T Consensus 83 s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 83 FSSEHKEAIVNGL---HSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp ECC----CTTTTT---TCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHH---hcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 322 223334 567788999999999999999988754
No 152
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=56.73 E-value=79 Score=25.74 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHhCCeEEec--chhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhh-cC-CCCCceEEEe
Q 022615 22 PMWLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLS-NG-EPDKPLIVHV 97 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~-~~-~~~~~~i~~~ 97 (294)
.+.-..+.+-+.+|.|+.= ++...+.+.++- .+-|| ||-+ +..+|...-.+...-.. .+ .-+...|.|+
T Consensus 89 sl~DTarvLs~~~D~IviR~~~~~~~~~lA~~s-----~vPVI-Na~~-~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~v 161 (335)
T 1dxh_A 89 SMKDTARVLGRMYDAIEYRGFKQEIVEELAKFA-----GVPVF-NGLT-DEYHPTQMLADVLTMREHSDKPLHDISYAYL 161 (335)
T ss_dssp CHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHS-----SSCEE-EEEC-SSCCHHHHHHHHHHHHHTCSSCGGGCEEEEE
T ss_pred cHHHHHHHHHhhCCEEEEecCChhHHHHHHHhC-----CCCEE-cCCC-CCCCcHHHHHHHHHHHHHcCCCcCCeEEEEe
Confidence 3556777788889998874 455555665543 33444 4555 55666432222221111 12 1245789999
Q ss_pred ecccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHH----HhhhcCCC--eEEEecccchhHHHHHhcCCEEEeecC
Q 022615 98 GRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REEL----EKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 98 G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~----~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
|.. ...-..-++.++..+ ++++.+++...+ .+.+ ++.++..+ +.+. +++.+.+..||++....+
T Consensus 162 GD~-~~~va~Sl~~~~~~~-G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~-----~d~~eav~~aDvvytd~w 233 (335)
T 1dxh_A 162 GDA-RNNMGNSLLLIGAKL-GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLT-----EDPKEAVKGVDFVHTDVW 233 (335)
T ss_dssp SCC-SSHHHHHHHHHHHHT-TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEE-----SCHHHHTTTCSEEEECCC
T ss_pred cCC-ccchHHHHHHHHHHc-CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE-----eCHHHHhCCCCEEEeCCc
Confidence 986 334466778888888 799999985322 1122 22222223 3322 678899999999987655
No 153
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=56.50 E-value=33 Score=28.17 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=52.6
Q ss_pred CceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecC
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE 168 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~ 168 (294)
...++.+|--. -+....+.++...++++++-+.+.. .+...+. ...+.. ..++.+++. ..|+++..+.
T Consensus 7 ~~rvgiiG~G~--~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~~~--~~~~~~-----~~~~~~ll~~~~~D~V~i~tp 76 (364)
T 3e82_A 7 TINIALIGYGF--VGKTFHAPLIRSVPGLNLAFVASRD-EEKVKRD--LPDVTV-----IASPEAAVQHPDVDLVVIASP 76 (364)
T ss_dssp CEEEEEECCSH--HHHHTHHHHHHTSTTEEEEEEECSC-HHHHHHH--CTTSEE-----ESCHHHHHTCTTCSEEEECSC
T ss_pred cceEEEECCCH--HHHHHHHHHHhhCCCeEEEEEEcCC-HHHHHhh--CCCCcE-----ECCHHHHhcCCCCCEEEEeCC
Confidence 35566666421 1222356677788888876444322 2333221 112222 256777887 6788888765
Q ss_pred CCCcchHHHHHHhcCCCEEee
Q 022615 169 SETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
...-.-.+.+++..|++|++-
T Consensus 77 ~~~H~~~~~~al~aGk~Vl~E 97 (364)
T 3e82_A 77 NATHAPLARLALNAGKHVVVD 97 (364)
T ss_dssp GGGHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHHHHHHCCCcEEEe
Confidence 444344577899999999984
No 154
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=56.10 E-value=62 Score=24.29 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=59.4
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHhc--CCCEEee-cC
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMSS--GIPVVGV-RA 191 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a~--G~pvI~~-~~ 191 (294)
.+++|+.+.+. ...+...+...+......-+.++..+.+. ..|++++-... +.-|..+++.+.. ++|||.- ..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 35666665432 23334443333333222223355555443 36888775442 3345556665542 6787653 33
Q ss_pred CCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 192 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 192 ~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
............|..+++..|.+.+++..+|..++.
T Consensus 86 ~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 86 TDTVDVVLGLESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp TCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 222221111156778899999999999999998764
No 155
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=56.10 E-value=48 Score=27.18 Aligned_cols=92 Identities=13% Similarity=0.002 Sum_probs=53.9
Q ss_pred CceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE 168 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~ 168 (294)
+..++.+|--. -+...+..++.. ++++++-+-+. ..+..++..+..+. .....++.+++.. .|+++..+.
T Consensus 26 ~irvgiiG~G~--~~~~~~~~~~~~-~~~~lvav~d~-~~~~a~~~a~~~~~----~~~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 26 ELRFAAVGLNH--NHIYGQVNCLLR-AGARLAGFHEK-DDALAAEFSAVYAD----ARRIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CCEEEEECCCS--TTHHHHHHHHHH-TTCEEEEEECS-CHHHHHHHHHHSSS----CCEESCHHHHHTCTTCCEEEECCC
T ss_pred CcEEEEECcCH--HHHHHHHHHhhc-CCcEEEEEEcC-CHHHHHHHHHHcCC----CcccCCHHHHhcCCCCCEEEEeCC
Confidence 45677777421 233445555553 77887655442 33444444443321 1112677788876 788887664
Q ss_pred CCCcchHHHHHHhcCCCEEeec
Q 022615 169 SETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
...-.-.+.+|+.+|++|++-+
T Consensus 98 ~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 98 SSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp HHHHHHHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHHHCCCeEEEeC
Confidence 3333445678999999999853
No 156
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=55.99 E-value=40 Score=22.12 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=56.6
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHh---cCCCEEee-
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 189 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~- 189 (294)
..+++++.+.+. ...+.......+......-+.++..+.+.. .|++++-.. .+.-|..+++.+. ..+|+|.-
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t 86 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVIS 86 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 456666665432 334444444434333333333555555543 477776443 2334555665554 35777653
Q ss_pred cCCCc---ccccccCCCCcceeecCCC-CHHHHHHHHHHHhhC
Q 022615 190 RAGGI---PDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 ~~~~~---~e~~~~~~~~~~g~~~~~~-d~~~l~~~i~~ll~~ 228 (294)
..... .+.+ +.|..+++..|. +.+.+.+.+..++..
T Consensus 87 ~~~~~~~~~~~~---~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 87 ATENMADIAKAL---RLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CCCCHHHHHHHH---HHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHH---HcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 33222 2233 457788888888 889999999888754
No 157
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=55.77 E-value=43 Score=22.35 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=60.6
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcC-CCeE-EEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHhc-----CCCE
Q 022615 118 EARIAFIGDGPY-REELEKMFTG-MPAV-FTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS-----GIPV 186 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~-~~v~-~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a~-----G~pv 186 (294)
..+++|+.+.+. ...+...+.. .++. ....-+.++....+.. .|++++-... +.-|..+++.+.. ++|+
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 87 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEE
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcE
Confidence 356666665432 2334444433 3322 2222222555555543 5777775443 3345566666654 5677
Q ss_pred Ee-ecCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 187 VG-VRAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 187 I~-~~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
|. +..... .+.+ ..|..+++..+.+.+++.+.|..++..
T Consensus 88 i~~s~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 88 IAMTGALTDDNVSRIV---ALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp EEEESSCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHH---hcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 65 333322 2233 457788899999999999999988764
No 158
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=55.59 E-value=19 Score=29.22 Aligned_cols=78 Identities=9% Similarity=0.075 Sum_probs=47.1
Q ss_pred HHHHHHHhCCC--cEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCCCCcchHHHHHHhcC
Q 022615 108 FLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESETLGLVVLEAMSSG 183 (294)
Q Consensus 108 ~l~~~~~~~~~--~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~e~~~~~~~Ea~a~G 183 (294)
.+++++..+++ ++++-+.+ ...+..++..+..++. ....++.+++. ..|+++..+....-...+.+++..|
T Consensus 16 ~~~~~l~~~~~~~~~l~av~d-~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~~G 90 (334)
T 3ohs_X 16 DFTAVLQTLPRSEHQVVAVAA-RDLSRAKEFAQKHDIP----KAYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAG 90 (334)
T ss_dssp HHHHHHTTSCTTTEEEEEEEC-SSHHHHHHHHHHHTCS----CEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCeEEEEEEc-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHhcC
Confidence 35677777764 45544333 3334444444433321 11366777887 5899888765444445577899999
Q ss_pred CCEEeec
Q 022615 184 IPVVGVR 190 (294)
Q Consensus 184 ~pvI~~~ 190 (294)
++|++-+
T Consensus 91 khVl~EK 97 (334)
T 3ohs_X 91 KAVLCEK 97 (334)
T ss_dssp CEEEEES
T ss_pred CEEEEEC
Confidence 9999854
No 159
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=54.94 E-value=31 Score=28.28 Aligned_cols=92 Identities=9% Similarity=-0.014 Sum_probs=52.7
Q ss_pred CceEEEeecccccccHHHHHHHHH-hCCCcEEEEE-cCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEee
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMD-RLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMP 166 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~-~~~~~~l~i~-G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~p 166 (294)
...++.+|--.- | ...+.++. ..++++++-+ ...+. ..++..+..++ +....+++.+++.. .|+++..
T Consensus 23 ~~rvgiIG~G~~--g-~~~~~~l~~~~~~~~lvav~d~~~~--~~~~~a~~~g~---~~~~~~~~~~ll~~~~~D~V~i~ 94 (357)
T 3ec7_A 23 TLKAGIVGIGMI--G-SDHLRRLANTVSGVEVVAVCDIVAG--RAQAALDKYAI---EAKDYNDYHDLINDKDVEVVIIT 94 (357)
T ss_dssp CEEEEEECCSHH--H-HHHHHHHHHTCTTEEEEEEECSSTT--HHHHHHHHHTC---CCEEESSHHHHHHCTTCCEEEEC
T ss_pred eeeEEEECCcHH--H-HHHHHHHHhhCCCcEEEEEEeCCHH--HHHHHHHHhCC---CCeeeCCHHHHhcCCCCCEEEEc
Confidence 345666664211 1 23556666 6788887644 33332 23333332231 01112567777774 7998887
Q ss_pred cCCCCcchHHHHHHhcCCCEEeec
Q 022615 167 SESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 167 s~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+....-...+.+++..|++|++-+
T Consensus 95 tp~~~h~~~~~~al~aGk~Vl~EK 118 (357)
T 3ec7_A 95 ASNEAHADVAVAALNANKYVFCEK 118 (357)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCcHHHHHHHHHHHHCCCCEEeec
Confidence 654444555778999999999753
No 160
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=54.93 E-value=5 Score=31.78 Aligned_cols=42 Identities=19% Similarity=0.048 Sum_probs=29.0
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCC
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
+++.+++..+|+++-.+..+..-..+..++..|+|+|+...+
T Consensus 64 ~dl~~~l~~~DvVIDft~p~~~~~~~~~a~~~G~~vVigTtG 105 (273)
T 1dih_A 64 SSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTG 105 (273)
T ss_dssp SCSTTTTTSCSEEEECSCHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred CCHHHHhcCCCEEEEcCChHHHHHHHHHHHhCCCCEEEECCC
Confidence 445566678999995554444444567788999999985544
No 161
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=54.92 E-value=48 Score=22.65 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=62.1
Q ss_pred CCcEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh---cCCCEEee
Q 022615 117 PEARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV 189 (294)
Q Consensus 117 ~~~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~ 189 (294)
+..+++|+.+.+ ....+...+...++.+...-+.++....+.. .|++++-... +.-|..+++.+. .++|||.-
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVI 85 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 345677776543 2344455555445444433333566666554 4777765442 333455555543 36777653
Q ss_pred -cCCC---cccccccCCCC-cceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 -RAGG---IPDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 -~~~~---~~e~~~~~~~~-~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
.... ..+.+ ..+ ..+++..|.+.+++...|..++..
T Consensus 86 s~~~~~~~~~~~~---~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 86 SGYADAQATIDAV---NRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp ECGGGHHHHHHHH---HTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHH---hccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 3222 12222 334 678889999999999999888754
No 162
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=54.91 E-value=45 Score=22.32 Aligned_cols=107 Identities=15% Similarity=0.201 Sum_probs=59.0
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCC----CeEEEecccchhHHHHHh--------cCCEEEeecCC-CCcchHHHHHHh--
Q 022615 118 EARIAFIGDGPY-REELEKMFTGM----PAVFTGMLLGEELSQAYA--------SGDVFVMPSES-ETLGLVVLEAMS-- 181 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~----~v~~~g~~~~~~~~~~~~--------~ad~~l~ps~~-e~~~~~~~Ea~a-- 181 (294)
..+++|+.+.+. ...+...+... .+.... +.++....+. ..|++++-... +.-|..+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 84 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAK--SGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDD 84 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEES--SHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEEC--CHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 345666665432 23333333321 233333 2366666665 36888775443 334556666665
Q ss_pred ---cCCCEEee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 182 ---SGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 182 ---~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
.++|+|.. ............+.|..+++..|.+.+++.+++....
T Consensus 85 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 85 SSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp GGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 45777653 3322211111115677889999999999999876654
No 163
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=54.87 E-value=16 Score=26.35 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=24.4
Q ss_pred HHHhcCCEEEeecCCCCcchHHHH---HHhcCCCEEee
Q 022615 155 QAYASGDVFVMPSESETLGLVVLE---AMSSGIPVVGV 189 (294)
Q Consensus 155 ~~~~~ad~~l~ps~~e~~~~~~~E---a~a~G~pvI~~ 189 (294)
+.+..||++|.-.. +.-.++.+| |.+.|+|||+-
T Consensus 73 ~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l 109 (165)
T 2khz_A 73 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCL 109 (165)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEE
T ss_pred HHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEE
Confidence 78999999887432 333445555 67889999985
No 164
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=54.80 E-value=30 Score=28.14 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCCCCcchHHHHHHhcCCCE
Q 022615 109 LKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPV 186 (294)
Q Consensus 109 l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~e~~~~~~~Ea~a~G~pv 186 (294)
++.++...+++.++-+-+ ...+..++..+..++. ...+++.+++. .+|+++..+....-...+.+++..|++|
T Consensus 17 ~~~~l~~~~~~~l~av~d-~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v 91 (344)
T 3ezy_A 17 HAENLKMIDDAILYAISD-VREDRLREMKEKLGVE----KAYKDPHELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHV 91 (344)
T ss_dssp HHHHGGGSTTEEEEEEEC-SCHHHHHHHHHHHTCS----EEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEE
T ss_pred HHHHHHhCCCcEEEEEEC-CCHHHHHHHHHHhCCC----ceeCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHhcCCeE
Confidence 667777778887764332 2233334433332321 11266777887 7899888765444445577899999999
Q ss_pred Eeec
Q 022615 187 VGVR 190 (294)
Q Consensus 187 I~~~ 190 (294)
++-+
T Consensus 92 ~~EK 95 (344)
T 3ezy_A 92 FCEK 95 (344)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9754
No 165
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=54.42 E-value=32 Score=23.20 Aligned_cols=105 Identities=11% Similarity=0.045 Sum_probs=57.6
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeEEEecc-cchhHHHHHhc--CCEEEeecC-CCCcchHHHHHH-hcCCCEEe-ecC
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAVFTGML-LGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAM-SSGIPVVG-VRA 191 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~-~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~-a~G~pvI~-~~~ 191 (294)
.++.|+-+.+ ....+.......+....+.. +.++-.+++.. .|++++--. .+.-|..+++.+ ..++|||. |..
T Consensus 9 ~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa~ 88 (123)
T 2lpm_A 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATGY 88 (123)
T ss_dssp CCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEecC
Confidence 4556665443 23344444443333323222 22444455543 477776433 233455566555 35789765 333
Q ss_pred CCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 192 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 192 ~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
+...... +.+..+++..|-+.+++.+.|.+++
T Consensus 89 ~~~~~~~---~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 89 GSKGLDT---RYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CTTSCCS---SSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred ccHHHHH---hCCCCcEEECCCCHHHHHHHHHHHH
Confidence 3222222 4467789999999999999988764
No 166
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=54.30 E-value=34 Score=27.51 Aligned_cols=95 Identities=12% Similarity=0.074 Sum_probs=55.0
Q ss_pred cchhHHHHHhcCCEEEeec-CCCCcchHHHHHHhcCCCEEeecCCCccccc-cc-C--CCCcceeecCCCCHHHHHHHHH
Q 022615 149 LGEELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGIPDII-PE-D--QDGKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~ps-~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~-~~-~--~~~~~g~~~~~~d~~~l~~~i~ 223 (294)
+...-..-++.||+++.-. ..|++-.++++... +.++|....+ +..+- .. . .....-++.++.+...+++.|.
T Consensus 70 ptp~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~g-i~~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~ 147 (307)
T 3ujp_A 70 PTPSDIVKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTEG-IEPIPIADGPYTDKPNPHAWMSPRNALVYVENIR 147 (307)
T ss_dssp CCHHHHHHHHHCSEEEECCTTSSTTHHHHHHTSC-SCCEEETTTT-CCCCBCCSSSSTTSBCCCCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCEEEEcCCChHHHHHHHHHhCC-CCCEEEeeCC-ccccccccccCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 3344557788899998765 47887777777653 4555543221 11111 00 0 0012234566666677777777
Q ss_pred HHhh--ChHHHHHHHHHHHHHHHh
Q 022615 224 PLLY--NQELRETMGQAARQEMEK 245 (294)
Q Consensus 224 ~ll~--~~~~~~~~~~~~~~~~~~ 245 (294)
..|. ||+......+|+..+.++
T Consensus 148 ~~L~~~DP~~a~~Y~~Na~~~~~~ 171 (307)
T 3ujp_A 148 QAFVELDPDNAKYYNANAAVYSEQ 171 (307)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHH
Confidence 7664 787777777777666543
No 167
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=54.28 E-value=34 Score=25.60 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=30.3
Q ss_pred cchhHHHHHhcCCEEEeecCCC-----------CcchHHHHHHhcCCCEEeec
Q 022615 149 LGEELSQAYASGDVFVMPSESE-----------TLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~ps~~e-----------~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+.++..+.+..||.+++|. .+ ++-..+-|+...|+|++.+.
T Consensus 69 ~~~~~~~~l~~ad~I~l~G-G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 69 SLGEITTKLRKNDFIYVTG-GNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp CHHHHHHHHHHSSEEEECC-SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred ChHHHHHHHHhCCEEEECC-CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 3467778899999999886 22 23345778888999998764
No 168
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=54.27 E-value=45 Score=22.16 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=62.9
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC------CCcchHHHHHHh---cCCCE
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES------ETLGLVVLEAMS---SGIPV 186 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~------e~~~~~~~Ea~a---~G~pv 186 (294)
.+++|+.+.+ ....+...+...+......-+.++....+.. .|++++-... +.-|..+++.+. .++|+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~i 83 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPV 83 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCE
Confidence 4666776543 3345555555545444433333666666655 3666664332 333445555543 46787
Q ss_pred Eee-cCCC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 187 VGV-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 187 I~~-~~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
|.- .... ..+.+ +.|..+++..+.+.+++.+.|..++...
T Consensus 84 i~ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 84 VLFTAYADIDLAVRGI---KEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp EEEEEGGGHHHHHHHH---HTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred EEEECCCCHHHHHHHH---HcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 653 2222 12233 4577888999999999999999987653
No 169
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=54.14 E-value=39 Score=24.98 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=58.1
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCC-CCcchHHHHHHh---cCCCEEee-cCCC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RAGG 193 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~-~~~~ 193 (294)
+++++.+.+. ...+...+...+ .....-+.++....+...|++++-... +.-|..+++.+. .++|+|.- ....
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 82 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSD 82 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCS
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4556655432 334444444433 222222224444444567888875432 334555555553 46787654 3222
Q ss_pred cccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 194 IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 194 ~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
..........|..+++..|.+.+++..+|..++.
T Consensus 83 ~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 83 DESVLKGFEAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp HHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 1111111144778899999999999999988764
No 170
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=53.93 E-value=70 Score=24.24 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=46.4
Q ss_pred hhHHHHHh--cCCEEEeecC-CCCcchHHHHHHh---cCCCEEee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHH
Q 022615 151 EELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 151 ~~~~~~~~--~ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~ 223 (294)
++..+.+. ..|++++-.. .+.-|..+++.+. ..+|||.- ............+.|..+++..|.+.+++..+|.
T Consensus 57 ~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~ 136 (250)
T 3r0j_A 57 AQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLR 136 (250)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Confidence 44444443 3677777543 2334555666553 35777653 3332222211115678899999999999999999
Q ss_pred HHhh
Q 022615 224 PLLY 227 (294)
Q Consensus 224 ~ll~ 227 (294)
.++.
T Consensus 137 ~~~~ 140 (250)
T 3r0j_A 137 VILR 140 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 171
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=53.74 E-value=46 Score=22.07 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=61.7
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc---CCEEEeecC-CCCcchHHHHHHhc----CCCEEe
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMSS----GIPVVG 188 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~---ad~~l~ps~-~e~~~~~~~Ea~a~----G~pvI~ 188 (294)
..+++|+.+.+. ...+...+...++.....-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~ 86 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIV 86 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence 356666765432 334444444334333333334555554443 466666443 34446667766643 467765
Q ss_pred e-cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 189 V-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 189 ~-~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
. ..... .+.+ +.|..+++..|.+.+++..+|.++....
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 87 VSGDTDVEEAVDVM---HLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EESSCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EeCCCChHHHHHHH---hCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 3 33222 2233 4577889999999999999999987654
No 172
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=53.68 E-value=61 Score=23.53 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=57.1
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecc-cchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHhc--CCCEEe-ec
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGML-LGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMSS--GIPVVG-VR 190 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~-~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a~--G~pvI~-~~ 190 (294)
.+++|+.+.+. ...+...+...+....+.. +..+....+. ..|++++-... +.-|..+++.+.. ..|||. +.
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEec
Confidence 34555554332 2233333333333333222 2244444433 35777765442 3345555555532 346654 33
Q ss_pred CCC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 191 AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 191 ~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
... ..+.+ ..|..+++..|.+.+++...|..++...
T Consensus 94 ~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 94 FSQRDLVERAR---DAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp GGGHHHHHTTG---GGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---hcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 222 12333 4577889999999999999999887643
No 173
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=53.65 E-value=40 Score=27.47 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=50.3
Q ss_pred cEEEEEcCCccHHHHHhhhcCCCeEEEe--cccc----------hhHHHHHhcCCEEEe--ecCCCC---cchHHHHHHh
Q 022615 119 ARIAFIGDGPYREELEKMFTGMPAVFTG--MLLG----------EELSQAYASGDVFVM--PSESET---LGLVVLEAMS 181 (294)
Q Consensus 119 ~~l~i~G~~~~~~~~~~~~~~~~v~~~g--~~~~----------~~~~~~~~~ad~~l~--ps~~e~---~~~~~~Ea~a 181 (294)
.++-|+|-|.-...+.+.++..+....+ ..+. .++.++++.||++.+ |...++ ++-..+..|-
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk 221 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMK 221 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSC
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcC
Confidence 5788999998877777777765533333 2222 357889999999876 444333 5677888888
Q ss_pred cCCCEEeecCC
Q 022615 182 SGIPVVGVRAG 192 (294)
Q Consensus 182 ~G~pvI~~~~~ 192 (294)
-|.-+|-+.-|
T Consensus 222 ~~a~lIN~aRG 232 (334)
T 3kb6_A 222 DGVYLINTARG 232 (334)
T ss_dssp TTEEEEECSCG
T ss_pred CCeEEEecCcc
Confidence 77777765443
No 174
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=53.63 E-value=46 Score=22.08 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=59.8
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecC-CCCcchHHHHHHh---cCCCEEeecC
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVRA 191 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~~~ 191 (294)
.+++|+.+.+ ....+...+..........-+.++....+. ..|++++-.. .+.-|..+++.+. .+.|+|....
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 87 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCC
T ss_pred cEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEec
Confidence 4566666543 233444444443322222222355554443 3578777544 3344555665554 3577765432
Q ss_pred -CCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 192 -GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 192 -~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
... .+.+ +.|..+++..|.+.+++.+.|..++..
T Consensus 88 ~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 88 FSEMKYFIKAI---ELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCCHHHHHHHH---HHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred CcChHHHHHHH---hCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 221 1223 457788899999999999999998754
No 175
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=53.30 E-value=17 Score=29.43 Aligned_cols=91 Identities=13% Similarity=-0.001 Sum_probs=51.4
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 169 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~ 169 (294)
..++.+|.-.- -..+++++...+++.++-+.+. ..+..++..+..++. ....++.+++. ..|+++..+..
T Consensus 6 ~rigiiG~G~i---g~~~~~~l~~~~~~~~~av~d~-~~~~~~~~a~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKV---APRFIEGVRLAGNGEVVAVSSR-TLESAQAFANKYHLP----KAYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTT---HHHHHHHHHHHCSEEEEEEECS-CSSTTCC---CCCCS----CEESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHH---HHHHHHHHHhCCCcEEEEEEcC-CHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEECCCc
Confidence 34556554211 1245666776778777644332 112223333333321 12367778887 68998876654
Q ss_pred CCcchHHHHHHhcCCCEEeec
Q 022615 170 ETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
..-.-.+.+++..|++|++-+
T Consensus 78 ~~h~~~~~~al~aGk~Vl~EK 98 (329)
T 3evn_A 78 QDHYKVAKAALLAGKHVLVEK 98 (329)
T ss_dssp GGHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHCCCeEEEcc
Confidence 444455778999999999854
No 176
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=53.29 E-value=29 Score=28.84 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=47.1
Q ss_pred HHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCCcchHHHHHHhcCCCE
Q 022615 109 LKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIPV 186 (294)
Q Consensus 109 l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~~~~~~~Ea~a~G~pv 186 (294)
.+.++...++++++-+-+. ..+..++.....++.. ..++.+++.. .|+++..+....-...+.+++..|++|
T Consensus 18 ~~~~l~~~~~~~l~av~d~-~~~~~~~~a~~~g~~~-----~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk~V 91 (387)
T 3moi_A 18 MAPAMRHHPDAQIVAACDP-NEDVRERFGKEYGIPV-----FATLAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHI 91 (387)
T ss_dssp HHHHHHHCTTEEEEEEECS-CHHHHHHHHHHHTCCE-----ESSHHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEE
T ss_pred HHHHHHhCCCeEEEEEEeC-CHHHHHHHHHHcCCCe-----ECCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCCce
Confidence 4566677788777644432 2333333333334432 2566777765 899888765444445577999999999
Q ss_pred Eeec
Q 022615 187 VGVR 190 (294)
Q Consensus 187 I~~~ 190 (294)
++-+
T Consensus 92 l~EK 95 (387)
T 3moi_A 92 IVEK 95 (387)
T ss_dssp EECS
T ss_pred eeeC
Confidence 9753
No 177
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=53.29 E-value=49 Score=26.61 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=55.5
Q ss_pred hhHHHHHhcCCEEEeecC-CCCcchHHHHHHhcCCC-EEeecCC-Cccccccc-CCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 151 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIP-VVGVRAG-GIPDIIPE-DQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~G~p-vI~~~~~-~~~e~~~~-~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
..-..-++.||++|.-.. .|++-.++++... +.+ +|....+ ........ ......-++.++.+...+++.|...|
T Consensus 79 p~d~~~l~~ADlvv~~G~~lE~w~~~~~~~~~-~~~~~v~~s~~i~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~~L 157 (313)
T 1toa_A 79 AGDVEWLGNADLILYNGLHLETKMGEVFSKLR-GSRLVVAVSETIPVSQRLSLEEAEFDPHVWFDVKLWSYSVKAVYESL 157 (313)
T ss_dssp HHHHHHHHHCSEEEECCTTCSTTCHHHHHHHT-TSSEEEEGGGGSCGGGSCBSTTSCBCCCGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEcCCCcHHHHHHHHHhcc-CCCeEEEeecCcccccccccCCCCCCCceeCCHHHHHHHHHHHHHHH
Confidence 334466799999998654 7888888998876 444 4432211 11111100 00113335566666777777777766
Q ss_pred h--ChHHHHHHHHHHHHHHHh
Q 022615 227 Y--NQELRETMGQAARQEMEK 245 (294)
Q Consensus 227 ~--~~~~~~~~~~~~~~~~~~ 245 (294)
. ||+......+|+..+.++
T Consensus 158 ~~~DP~~a~~Y~~N~~~~~~~ 178 (313)
T 1toa_A 158 CKLLPGKTREFTQRYQAYQQQ 178 (313)
T ss_dssp HHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHChhhHHHHHHHHHHHHHH
Confidence 4 888777777777776543
No 178
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=52.67 E-value=48 Score=22.01 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=42.4
Q ss_pred cCCEEEeecCC-CCcchHHHHHHh----cCCCEEe-ecCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 159 SGDVFVMPSES-ETLGLVVLEAMS----SGIPVVG-VRAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 159 ~ad~~l~ps~~-e~~~~~~~Ea~a----~G~pvI~-~~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
..|++++-... +.-|..+++.+. ...|||. |..... .+.+ +.|-.+++..|-+.+++.+.|..++.
T Consensus 52 ~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 52 NYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECL---ESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 35888875443 233555666553 2467765 333322 2233 45778999999999999999988865
No 179
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=52.60 E-value=46 Score=26.53 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=50.9
Q ss_pred CceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecC
Q 022615 91 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE 168 (294)
Q Consensus 91 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~ 168 (294)
...++++|.-.--+ .+++++...++++++.+-+ ...+..++.... +.. ..++.+++. .+|+++..+.
T Consensus 10 ~~~igiIG~G~~g~---~~~~~l~~~~~~~~v~v~d-~~~~~~~~~~~~--~~~-----~~~~~~~l~~~~~D~V~i~tp 78 (315)
T 3c1a_A 10 PVRLALIGAGRWGK---NYIRTIAGLPGAALVRLAS-SNPDNLALVPPG--CVI-----ESDWRSVVSAPEVEAVIIATP 78 (315)
T ss_dssp CEEEEEEECTTTTT---THHHHHHHCTTEEEEEEEE-SCHHHHTTCCTT--CEE-----ESSTHHHHTCTTCCEEEEESC
T ss_pred cceEEEECCcHHHH---HHHHHHHhCCCcEEEEEEe-CCHHHHHHHHhh--Ccc-----cCCHHHHhhCCCCCEEEEeCC
Confidence 34566665321112 3456666677777653332 223333333332 221 245667775 6899888765
Q ss_pred CCCcchHHHHHHhcCCCEEeec
Q 022615 169 SETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
...-...+.+++..|++|++-+
T Consensus 79 ~~~h~~~~~~al~~Gk~v~~eK 100 (315)
T 3c1a_A 79 PATHAEITLAAIASGKAVLVEK 100 (315)
T ss_dssp GGGHHHHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHHHCCCcEEEcC
Confidence 4444555778899999998753
No 180
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=52.56 E-value=45 Score=21.66 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=36.1
Q ss_pred CCcEEEEEcCC-ccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 117 PEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 117 ~~~~l~i~G~~-~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
.++.+.+.|.- ..+..+.+++...+-.+...++ ..++.+|........+.++..|...|+|||..
T Consensus 17 ~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s--------~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~ 82 (107)
T 3l3e_A 17 HKVVVCVSKKLSKKQSELNGIAASLGADYRRSFD--------ETVTHFIYQGRPNDTNREYKSVKERGVHIVSE 82 (107)
T ss_dssp TTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCC--------TTCCEEECCCCTTCCCHHHHHHHHTTCEEECH
T ss_pred CCeEEEEeCCChHhHHHHHHHHHHcCCEEecccc--------CCceEEEecCCCCCCCHHHHHHHHCCCeEecH
Confidence 34555555532 2344555555555545554442 24555665332333467788888888888864
No 181
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.24 E-value=48 Score=22.04 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=7.2
Q ss_pred CceEEEeeccc
Q 022615 91 KPLIVHVGRLG 101 (294)
Q Consensus 91 ~~~i~~~G~~~ 101 (294)
...|++.|.+.
T Consensus 25 G~~~v~TG~l~ 35 (112)
T 2ebu_A 25 GLIFVITGVLE 35 (112)
T ss_dssp TCEEEECSCCS
T ss_pred CCEEEEeeeCC
Confidence 45677777774
No 182
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=52.11 E-value=67 Score=23.53 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=38.6
Q ss_pred cCCEEEeecCC-CCcchHHHHHHh-------cCCCEEeecCCC-c----ccccccCCCCcceeecCCCCHHHHHHHHHHH
Q 022615 159 SGDVFVMPSES-ETLGLVVLEAMS-------SGIPVVGVRAGG-I----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 225 (294)
Q Consensus 159 ~ad~~l~ps~~-e~~~~~~~Ea~a-------~G~pvI~~~~~~-~----~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~l 225 (294)
..|++|+-... +.-|..+++.+. ..+|||...... . .+.+ ..+..+++..|-+ ++.+.|..+
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~---~~Ga~~~l~KP~~--~L~~~i~~~ 193 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETI---QAGMDAFLDKSLN--QLANVIREI 193 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHH---HHTCSEEEETTCT--THHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHH---hCCCCEEEcCcHH--HHHHHHHHH
Confidence 46888875443 334555665553 467876543221 1 1223 3466778888777 899999888
Q ss_pred hhCh
Q 022615 226 LYNQ 229 (294)
Q Consensus 226 l~~~ 229 (294)
+...
T Consensus 194 l~~~ 197 (206)
T 3mm4_A 194 ESKR 197 (206)
T ss_dssp C---
T ss_pred Hhhh
Confidence 7643
No 183
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=51.94 E-value=49 Score=21.94 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=59.6
Q ss_pred CcEEEEEcCCc-cHHHHHhhhcCCCeEEEe-cccchhHHHHHh--cCCEEEeecCC--CCcchHHHHHHh--cCCCEEee
Q 022615 118 EARIAFIGDGP-YREELEKMFTGMPAVFTG-MLLGEELSQAYA--SGDVFVMPSES--ETLGLVVLEAMS--SGIPVVGV 189 (294)
Q Consensus 118 ~~~l~i~G~~~-~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~--~ad~~l~ps~~--e~~~~~~~Ea~a--~G~pvI~~ 189 (294)
..+++|+.+.+ ....+...+...++...+ .-+.++....+. ..|++++-... +.-|..+++.+. .++|+|.-
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~l 88 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFI 88 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 35566665443 223334433333444333 223345544443 36888775443 233444555443 57887753
Q ss_pred -cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 190 -RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 190 -~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
..... ...+ ..|..+++..+.+.+++...|..++.
T Consensus 89 s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 89 TSSQDVETFQRAK---RVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp ECCCCHHHHHHHH---TTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHH---hcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 33322 1233 55778889999999999999988865
No 184
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=51.66 E-value=36 Score=27.89 Aligned_cols=88 Identities=19% Similarity=0.127 Sum_probs=51.1
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 169 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~ 169 (294)
..++.+|--.- +....+.++...+++.++-+-+.. .+...+.. ..+... .++.+++. ..|+++..+..
T Consensus 6 ~rvgiiG~G~~--g~~~~~~~l~~~~~~~l~av~d~~-~~~~~~~~--~~~~~~-----~~~~~ll~~~~vD~V~i~tp~ 75 (358)
T 3gdo_A 6 IKVGILGYGLS--GSVFHGPLLDVLDEYQISKIMTSR-TEEVKRDF--PDAEVV-----HELEEITNDPAIELVIVTTPS 75 (358)
T ss_dssp EEEEEECCSHH--HHHTTHHHHTTCTTEEEEEEECSC-HHHHHHHC--TTSEEE-----SSTHHHHTCTTCCEEEECSCT
T ss_pred ceEEEEccCHH--HHHHHHHHHhhCCCeEEEEEEcCC-HHHHHhhC--CCCceE-----CCHHHHhcCCCCCEEEEcCCc
Confidence 45666664211 112245667777888876444332 22222221 123222 55667777 67888887654
Q ss_pred CCcchHHHHHHhcCCCEEee
Q 022615 170 ETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 170 e~~~~~~~Ea~a~G~pvI~~ 189 (294)
..-.-.+.+++..|++|++-
T Consensus 76 ~~H~~~~~~al~aGkhVl~E 95 (358)
T 3gdo_A 76 GLHYEHTMACIQAGKHVVME 95 (358)
T ss_dssp TTHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEe
Confidence 44455577999999999984
No 185
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=51.36 E-value=65 Score=25.58 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=55.6
Q ss_pred cchhHHHHHhcCCEEEeecC-CCC----cchHHHHHHhcC--CCEEeecCCCcccc-cc---cCCCCcceeecCCCCHHH
Q 022615 149 LGEELSQAYASGDVFVMPSE-SET----LGLVVLEAMSSG--IPVVGVRAGGIPDI-IP---EDQDGKIGYLFNPGDLDD 217 (294)
Q Consensus 149 ~~~~~~~~~~~ad~~l~ps~-~e~----~~~~~~Ea~a~G--~pvI~~~~~~~~e~-~~---~~~~~~~g~~~~~~d~~~ 217 (294)
+...-..-++.||+++.-.. .|. +-.++++..... .++|....+ .... +. .......-++.++.+...
T Consensus 56 ptp~d~~~l~~Adlvv~~G~~lE~~~~~w~~k~~~~~~~~~~~~~v~~s~g-i~~~~~~~~~~~~~~dPHvWldp~~~~~ 134 (294)
T 3hh8_A 56 PLPEDAEKTSNADVIFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSDG-IDVIYLEGASEKGKEDPHAWLNLENGII 134 (294)
T ss_dssp CCHHHHHHHHHCSEEEECCTTSSCSTTSHHHHHHHHTTCCBTTTEEETTTT-SCCCBSTTCCSTTCBCCCGGGSHHHHHH
T ss_pred CCHHHHHHHHhCCEEEEcCCCccchHHHHHHHHHHhccccCCceEEEccCC-cccccCCCccCCCCCCCceeCCHHHHHH
Confidence 34445577888999988653 676 777777776543 566653221 1111 00 000112334566667777
Q ss_pred HHHHHHHHhh--ChHHHHHHHHHHHHHHH
Q 022615 218 CLSKLEPLLY--NQELRETMGQAARQEME 244 (294)
Q Consensus 218 l~~~i~~ll~--~~~~~~~~~~~~~~~~~ 244 (294)
+++.|...|. ||+......+++..+.+
T Consensus 135 ~a~~I~~~L~~~dP~~a~~y~~N~~~~~~ 163 (294)
T 3hh8_A 135 YSKNIAKQLIAKDPKNKETYEKNLKAYVA 163 (294)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 7777777664 78777777777766544
No 186
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=51.12 E-value=55 Score=22.23 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=45.7
Q ss_pred hhHHHHHhc--CCEEEeecC-CCCcchHHHHHHh---cCCCEEee-cCCC---cccccccCCCCcceeecCCCCHHHHHH
Q 022615 151 EELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLS 220 (294)
Q Consensus 151 ~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~-~~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~ 220 (294)
++..+.+.. .|++++-.. .+.-|..+++.+. .++|||.- .... ..+.+ +.|..+++..+.+.+++.+
T Consensus 56 ~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~Kp~~~~~l~~ 132 (150)
T 4e7p_A 56 QEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAV---KAGVDAYVLKERSIADLMQ 132 (150)
T ss_dssp HHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHH---HTTCSEEEETTSCHHHHHH
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH---HCCCcEEEecCCCHHHHHH
Confidence 444444433 466666443 3334555555554 35676653 3222 22233 5577889999999999999
Q ss_pred HHHHHhhC
Q 022615 221 KLEPLLYN 228 (294)
Q Consensus 221 ~i~~ll~~ 228 (294)
+|..++..
T Consensus 133 ~i~~~~~~ 140 (150)
T 4e7p_A 133 TLHTVLEG 140 (150)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99998864
No 187
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=50.94 E-value=52 Score=21.88 Aligned_cols=75 Identities=9% Similarity=0.147 Sum_probs=44.1
Q ss_pred hhHHHHHh---cCCEEEeecCC-CCcchHHHHHHhc---CCCEEee--cCCCcccccccCCCCcceeecCCCCHHHHHHH
Q 022615 151 EELSQAYA---SGDVFVMPSES-ETLGLVVLEAMSS---GIPVVGV--RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 221 (294)
Q Consensus 151 ~~~~~~~~---~ad~~l~ps~~-e~~~~~~~Ea~a~---G~pvI~~--~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~ 221 (294)
++....+. ..|++++-... +.-|..+++.+.. ++|+|.- ....... .. .- ..+++..+.+.+++...
T Consensus 49 ~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~-~~--~~-~~~~l~KP~~~~~L~~~ 124 (138)
T 2b4a_A 49 SAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE-SS--EH-NLSYLQKPFAISELRAA 124 (138)
T ss_dssp HHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC-CS--SS-CEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH-HH--HH-HHheeeCCCCHHHHHHH
Confidence 44444443 35777765443 3345566776653 5676543 3333222 21 11 67788899999999999
Q ss_pred HHHHhhCh
Q 022615 222 LEPLLYNQ 229 (294)
Q Consensus 222 i~~ll~~~ 229 (294)
|..++...
T Consensus 125 i~~~~~~~ 132 (138)
T 2b4a_A 125 IDYHKPSM 132 (138)
T ss_dssp HHHTCCC-
T ss_pred HHHHHHhc
Confidence 99887643
No 188
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=50.68 E-value=25 Score=26.45 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=53.4
Q ss_pred EeecccccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhh--hcCCCeEEEecc-----------------cchh
Q 022615 96 HVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKM--FTGMPAVFTGML-----------------LGEE 152 (294)
Q Consensus 96 ~~G~~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~--~~~~~v~~~g~~-----------------~~~~ 152 (294)
.+|..+.-.++..|++.+++. ...++.|+|.|.....+... ... ++.+.|.+ ..++
T Consensus 54 ~~G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~d 132 (211)
T 2dt5_A 54 SYGTRGVGYTVPVLKRELRHILGLNRKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDL 132 (211)
T ss_dssp CCCCTTTCEEHHHHHHHHHHHHTTTSCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGG
T ss_pred HhcCCceeEEhHHHHHHHHHHhCcCCCCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHh
Confidence 335444455566666655332 34778889988765555543 112 33333322 1367
Q ss_pred HHHHHhc-CCEEEeecCCCCcchHHHHHHhcCCCEEeecCC
Q 022615 153 LSQAYAS-GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 153 ~~~~~~~-ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
+.+++.. .|+++...-...-.-..-.+..+|+..|..-.+
T Consensus 133 l~ell~~~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P 173 (211)
T 2dt5_A 133 LPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAP 173 (211)
T ss_dssp HHHHSTTTCCEEEECSCHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred HHHHHHcCCCEEEEeCCchhHHHHHHHHHHcCCCEEEECCc
Confidence 8888864 777776443222224456677889997755433
No 189
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=50.28 E-value=35 Score=26.97 Aligned_cols=94 Identities=7% Similarity=0.045 Sum_probs=52.9
Q ss_pred hhHHHHHhcCCEEEeecC-CCCcchHHHHHHhcCCCEEeecCCCcccccc-----c-------------CCC--Ccceee
Q 022615 151 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIP-----E-------------DQD--GKIGYL 209 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~-----~-------------~~~--~~~g~~ 209 (294)
..-..-++.||++|.-.. .|++-.+++++......+++....++.-+-. . ..+ ...-++
T Consensus 40 p~d~~~l~~Adlvv~~G~~~E~w~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~dPH~W 119 (284)
T 2prs_A 40 PSDVKRLQNADLVVWVGPEMEAFMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLW 119 (284)
T ss_dssp TTHHHHHHHCSEEEECCTTTCGGGHHHHHTSCGGGEEEGGGCTTTGGGCCC---------------------CCCCCCGG
T ss_pred HHHHHHHHcCCEEEEcCCCcHHHHHHHHHhcCCCCcEEEecCCCcccccccccccccccccccccccccCCCCCCCCccc
Confidence 344567889999987653 6788778887665433343332222211100 0 000 122245
Q ss_pred cCCCCHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Q 022615 210 FNPGDLDDCLSKLEPLLY--NQELRETMGQAARQEME 244 (294)
Q Consensus 210 ~~~~d~~~l~~~i~~ll~--~~~~~~~~~~~~~~~~~ 244 (294)
.++.+...+++.|...|. ||+......+|+..+.+
T Consensus 120 ldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~ 156 (284)
T 2prs_A 120 LSPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEA 156 (284)
T ss_dssp GCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 555666677777777664 78777777777776654
No 190
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=50.14 E-value=18 Score=29.06 Aligned_cols=90 Identities=16% Similarity=0.022 Sum_probs=49.3
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEE-EEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIA-FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 170 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~-i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e 170 (294)
..++.+|.- .-+...++.++...++++++ ++...+.. .++..+..++. .. ++..++-..+|+++..+...
T Consensus 6 ~~vgiiG~G--~~g~~~~~~~l~~~~~~~lvav~d~~~~~--~~~~~~~~g~~---~~--~~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLG--GIAQKAWLPVLAAASDWTLQGAWSPTRAK--ALPICESWRIP---YA--DSLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCS--THHHHTHHHHHHSCSSEEEEEEECSSCTT--HHHHHHHHTCC---BC--SSHHHHHTTCSEEEECSCTT
T ss_pred ceEEEECCC--HHHHHHHHHHHHhCCCeEEEEEECCCHHH--HHHHHHHcCCC---cc--CcHHHhhcCCCEEEEeCCch
Confidence 456666641 11112256667777888876 44433322 22222222322 12 22333346789998876544
Q ss_pred CcchHHHHHHhcCCCEEeec
Q 022615 171 TLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~ 190 (294)
.-...+.+++..|++|++-.
T Consensus 77 ~h~~~~~~al~~G~~v~~eK 96 (319)
T 1tlt_A 77 SHFDVVSTLLNAGVHVCVDK 96 (319)
T ss_dssp HHHHHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHcCCeEEEeC
Confidence 44455678899999999753
No 191
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=49.76 E-value=55 Score=21.84 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=60.0
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh---cCCCEEee-cC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RA 191 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~-~~ 191 (294)
+++++.+.+. ...+...+...+..+...-+.++..+.+. ..|++++-... +.-|..+++.+. ..+|+|.- ..
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 5666765543 34455555544443333333355555444 36888775432 334555555553 45676653 33
Q ss_pred CCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 192 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 192 ~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
... .+.+ +.|..+++..|.+.+++...|..++.
T Consensus 86 ~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 86 GSVDLAVNLI---QKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp CCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH---HCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 222 2223 45778899999999999999988764
No 192
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=49.61 E-value=68 Score=24.42 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=57.3
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHhc--CCCEEeec-
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS--GIPVVGVR- 190 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a~--G~pvI~~~- 190 (294)
..+++|+.+.+. ...+...+...+..+...-+.++....+.. .|++++-... +.-|..+++.+.. .+|||.-.
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~ 116 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTA 116 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEEC
Confidence 345666654432 233344444333332222223444444433 5777764432 2334555555543 46776533
Q ss_pred CCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 191 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 191 ~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
...........+.|-.+++..+.+.+++..+|..++.
T Consensus 117 ~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 117 RDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp CCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 2222211111145778899999999999999998765
No 193
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=49.61 E-value=59 Score=22.15 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=58.0
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHh---cCCCEEeecC
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVRA 191 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~~~ 191 (294)
.+++|+.+.+ ....+...+...+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|||.-..
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred ceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 3455555433 2233444444433333322233444444443 477776544 2334555555543 4677765432
Q ss_pred -CCcc---cccccCCCC-cceeecCCCCHHHHHHHHHHHhhC
Q 022615 192 -GGIP---DIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 192 -~~~~---e~~~~~~~~-~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
.... +.+ ..| ..+++..|.+.+++..+|..++..
T Consensus 95 ~~~~~~~~~~~---~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 95 DPDLKLIAKAI---NEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp CCCHHHHHHHH---HTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---hCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 2211 223 445 578899999999999999988753
No 194
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=49.58 E-value=77 Score=23.48 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=60.6
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh---cCCCEEee-c
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 190 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~-~ 190 (294)
.+++|+.+.+. ...+...+...++.....-+.++....+. ..|++++-... +.-|..+++.+. .++|||.- .
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~ 87 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSA 87 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 45666665432 23344444333433332223355545444 35887765432 334555666553 46887653 2
Q ss_pred CCC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 191 AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 191 ~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
... ..+.+ ..|..+++..|.+.+++..+|..++.
T Consensus 88 ~~~~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 88 RSSVDDRVAGL---EAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCTTTCCCTTT---TTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 222 23334 56788999999999999999988764
No 195
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.97 E-value=60 Score=22.02 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=36.8
Q ss_pred CCCcEEEEEcCC-ccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEee
Q 022615 116 LPEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 116 ~~~~~l~i~G~~-~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
+.++.+.|.|.. ..+..+.+++...+-.+...++. .++.+|.. +.-+.++..|...|+|||..
T Consensus 23 f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~--------~~ThLI~~---~~~~~K~~~A~~~gi~IV~~ 86 (129)
T 2d8m_A 23 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTR--------DSTHLICA---FANTPKYSQVLGLGGRIVRK 86 (129)
T ss_dssp STTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCT--------TCCEEEES---SSSCHHHHHHHHHTCEEEET
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCC--------CCeEEEec---CCCChHHHHHHHCCCcEecH
Confidence 345566666643 23455666666656555555532 35555554 23356777777788888864
No 196
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=48.67 E-value=31 Score=22.98 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=38.7
Q ss_pred CCEEEeecC-CCCcchHHHHHHh---cCCCEEee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 160 GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 160 ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.|++++-.. .+.-|..+++.+. ..+|+|.- ............+.|..+++..|.+.+++..+|..++.
T Consensus 60 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 60 PGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp CSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 466665432 2223334444433 26787653 32222111111145778899999999999999988765
No 197
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=48.62 E-value=55 Score=21.52 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=61.3
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeEEEec-ccchhHHHHHh--cCCEEEeecC-CCCcchHHHHHHh---cCCCEEee-
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAVFTGM-LLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 189 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~--~ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~- 189 (294)
.++.++.+.+ ....+.......+....+. -+.++....+. ..|++++-.. .+.-|..+++.+. .+.|+|.-
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 3566666543 3344555555445444422 22355555443 4678777544 3334555665554 35666643
Q ss_pred cCCC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 ~~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
.... ..+.+ +.|..+++..|.+.+++.++|..++..
T Consensus 82 ~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 82 AKNDHFYGKHCA---DAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp CC---CTHHHHH---HTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHH---HhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3222 22333 457788999999999999999988764
No 198
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=48.62 E-value=58 Score=21.79 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=58.9
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCe--EEEecccchhHHHHHh------------cCCEEEeecCC-CCcchHHHHHHh-
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPA--VFTGMLLGEELSQAYA------------SGDVFVMPSES-ETLGLVVLEAMS- 181 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v--~~~g~~~~~~~~~~~~------------~ad~~l~ps~~-e~~~~~~~Ea~a- 181 (294)
.+++|+.+.+. ...+...+...+. .....-+.++....+. ..|++++-... +.-|..+++.+.
T Consensus 7 ~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 86 (149)
T 1k66_A 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQ 86 (149)
T ss_dssp SCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTT
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHh
Confidence 45556654432 2333333333222 2222223356666665 35787765443 334566677665
Q ss_pred ----cCCCEEee-cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 182 ----SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 182 ----~G~pvI~~-~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.++|+|.- ..... .+.+ +.|..+++..+.+.+++...|..++.
T Consensus 87 ~~~~~~~~ii~~t~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 87 DEVLKKIPVVIMTTSSNPKDIEICY---SYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp STTGGGSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcccCCCeEEEEeCCCCHHHHHHHH---HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 35677654 33221 2223 45778889999999999999988754
No 199
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=48.26 E-value=52 Score=21.11 Aligned_cols=107 Identities=13% Similarity=0.244 Sum_probs=56.6
Q ss_pred EEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHh---cCCCEEee-cC
Q 022615 120 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RA 191 (294)
Q Consensus 120 ~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~-~~ 191 (294)
++.++.+.+ ....+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. ...|+|.. ..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESC
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecC
Confidence 345555443 2233444444333333322233455555543 577776433 2334555666654 35777653 33
Q ss_pred CCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 192 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 192 ~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
..........+.|..+++..|.+.+++...+..++
T Consensus 82 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 82 ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHH
Confidence 32211111114577889999999999999998765
No 200
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=47.31 E-value=1.2e+02 Score=24.99 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHhCCeEEec--chhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHH-hhcCCCCCceEEEee
Q 022615 22 PMWLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR-LSNGEPDKPLIVHVG 98 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~G 98 (294)
.+.-..+.+-+.+|.|++= ++...+.+.+.- .+-|| ||-+ +...|...-.+...- ...+.-+...|.|+|
T Consensus 111 sl~DTarvLs~~~D~IviR~~~~~~~~~lA~~s-----~vPVI-Na~~-~~~HPtQaLaDl~Ti~E~~g~l~gl~va~vG 183 (359)
T 2w37_A 111 STSDTAKVLGSMFDGIEFRGFKQSDAEILARDS-----GVPVW-NGLT-DEWHPTQMLADFMTVKENFGKLQGLTLTFMG 183 (359)
T ss_dssp CHHHHHHHHHHHCSEEEEESSCHHHHHHHHHHS-----SSCEE-EEEC-SSCCHHHHHHHHHHHHHHHSCCTTCEEEEES
T ss_pred CHHHHHHHHHHhcCEEEEecCChHHHHHHHHhC-----CCCEE-cCCC-CCCCccHHHHHHHHHHHHhCCcCCeEEEEEC
Confidence 4556677778889998874 455556665543 33444 4555 555554322221111 111223557899999
Q ss_pred cccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHH----HhhhcCC--CeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 99 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REEL----EKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~----~~~~~~~--~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
.. ...-..-++.++..+ ++.+.+++...+ .+.+ ++.++.. .+.+. +++.+.+..||++....+
T Consensus 184 D~-~~rva~Sl~~~~~~l-G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~-----~d~~eav~~aDvvytd~w 254 (359)
T 2w37_A 184 DG-RNNVANSLLVTGAIL-GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVIT-----DDLDEGLKGSNVVYTDVW 254 (359)
T ss_dssp CT-TSHHHHHHHHHHHHH-TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEE-----SCHHHHHTTCSEEEECCS
T ss_pred CC-ccchHHHHHHHHHHc-CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE-----eCHHHHhcCCCEEEEccc
Confidence 86 234456777777777 789999985322 1122 2222222 24332 677889999999987655
No 201
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=47.25 E-value=55 Score=21.14 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=58.5
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh--cCCCEEee-cCC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--SGIPVVGV-RAG 192 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a--~G~pvI~~-~~~ 192 (294)
++.++.+.+. ...+.......+......-+.++..+.+.. .|++++-... +.-|..+++.+. .+.|+|.- ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 4556655432 233444444334333333333555555543 5777765442 333555555553 35777653 322
Q ss_pred Ccc---cccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 193 GIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 193 ~~~---e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
... +.+ +.|..+++..|.+.+++..++..++.
T Consensus 84 ~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 84 SEIDKVIGL---EIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CHHHHHHHH---HTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred ChHHHHHHH---hCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 221 223 45778899999999999999987764
No 202
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=47.12 E-value=39 Score=26.80 Aligned_cols=97 Identities=10% Similarity=0.016 Sum_probs=53.1
Q ss_pred cccchhHHHHHhcCCEEEeec-CCCCcchHHHHHHhcC-CCEEeecCCCcccccccC--C------------CCcceeec
Q 022615 147 MLLGEELSQAYASGDVFVMPS-ESETLGLVVLEAMSSG-IPVVGVRAGGIPDIIPED--Q------------DGKIGYLF 210 (294)
Q Consensus 147 ~~~~~~~~~~~~~ad~~l~ps-~~e~~~~~~~Ea~a~G-~pvI~~~~~~~~e~~~~~--~------------~~~~g~~~ 210 (294)
+-+...-..-++.||++|.-. ..|++-.++++..... +.+|.. ..+.. +.... . ....-++.
T Consensus 48 yeptp~d~~~l~~Adlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~-~~~i~-l~~~~~~~~~~~~~~~~h~~~~dPHvWl 125 (286)
T 3gi1_A 48 FEPSVNDVAAIYDADLFVYHSHTLEAWARDLDPNLKKSKVDVFEA-SKPLT-LDRVKGLEDMEVTQGIDPATLYDPHTWT 125 (286)
T ss_dssp CCCCHHHHHHHHTSSEEEESCTTTSGGGTTCCTTTTTCCCEEEET-TTTSC-CCBCC---------------CBCCCGGG
T ss_pred ccCCHHHHHHHHhCCEEEEcCCCchHHHHHHHHhccCCCcEEEEC-CCCcc-ccccCCcccccccccccCCCCCCCceec
Confidence 334445557789999998765 3677666666655432 333322 11221 11000 0 01223445
Q ss_pred CCCCHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Q 022615 211 NPGDLDDCLSKLEPLLY--NQELRETMGQAARQEMEK 245 (294)
Q Consensus 211 ~~~d~~~l~~~i~~ll~--~~~~~~~~~~~~~~~~~~ 245 (294)
++.+...+++.|...|. ||+......+|+..+..+
T Consensus 126 dp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 162 (286)
T 3gi1_A 126 DPVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKE 162 (286)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 55666677777777664 787777777777666543
No 203
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=46.66 E-value=40 Score=22.19 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=41.5
Q ss_pred HHHHHH-hcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-h-CCHHHH
Q 022615 175 VVLEAM-SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-K-YDWRAA 251 (294)
Q Consensus 175 ~~~Ea~-a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~-~s~~~~ 251 (294)
.+++.. ..|-||+.+..|.-. . .+++..+.+.+.+.+ .++.+++..+.+.+.-.+... + .+++.+
T Consensus 22 ~ll~~v~~~~epViITr~G~~~-a----------Vl~s~e~ye~l~etl-~LL~~~~~~~~L~~a~~~~~~G~~~s~eev 89 (108)
T 3g5o_A 22 EFVDAVSSTQDQITITKNGAPA-A----------VLVGADEWESLQETL-YWLAQPGIRESIAEADADIASGRTYGEDEI 89 (108)
T ss_dssp HHHHHHHTSSCEEEEEETTEEE-E----------EEEEHHHHHHHHHHH-HHHTSTTHHHHHHHHHHHHHHTCEECHHHH
T ss_pred HHHHHHHhhCCcEEEEECCCCc-E----------EEecHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHcCCCcCHHHH
Confidence 455555 479999988665322 2 245544666665554 345677777777766655543 2 677665
Q ss_pred HHHH
Q 022615 252 TRTI 255 (294)
Q Consensus 252 ~~~~ 255 (294)
.+++
T Consensus 90 ~~~l 93 (108)
T 3g5o_A 90 RAEF 93 (108)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 204
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=46.45 E-value=23 Score=27.04 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=27.5
Q ss_pred hhHHHHH-hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecC
Q 022615 151 EELSQAY-ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 151 ~~~~~~~-~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 191 (294)
+++.+++ ..+|+++..+......-.+.+++..|++||+...
T Consensus 41 ~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~~~ 82 (236)
T 2dc1_A 41 RGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVLST 82 (236)
T ss_dssp SSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCG
T ss_pred CCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEECc
Confidence 4566666 6889888766433333345678888999887643
No 205
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=46.08 E-value=61 Score=21.34 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=58.6
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh---cCCCEEe-ecC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVG-VRA 191 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~-~~~ 191 (294)
++.|+.+.+. ...+...+...+......-+.++....+. ..|++++-... +.-|..+++.+. ...|+|. +..
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECT
T ss_pred EEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 4566665432 23333433333333322222344444443 36888775443 233555555553 4577765 333
Q ss_pred CCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 192 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 192 ~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
..........+.|..+++..|.+.+++...+..++..
T Consensus 85 ~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 85 DEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp TCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 3222211111457788999999999999999988764
No 206
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=46.04 E-value=55 Score=20.79 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=55.3
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh---cCCCEEe-ecC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVG-VRA 191 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~-~~~ 191 (294)
++.++.+.+. ...+.......++.....-+.++..+.+.. .|++++-... +.-|..+++.+. .+.|+|. +..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 4555655432 233344443334333322233555555443 5777764432 333555555553 4577764 322
Q ss_pred CCc-ccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 192 GGI-PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 192 ~~~-~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
... .+.. ..+..+++..|.+.+++...+..++
T Consensus 83 ~~~~~~~~---~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 83 SHYRSDMS---SWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GGGGGCGG---GGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred cchHHHHH---hccccceEECCCCHHHHHHHHHHHh
Confidence 211 2333 4466788999999999999887764
No 207
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=45.43 E-value=1.2e+02 Score=24.38 Aligned_cols=133 Identities=13% Similarity=0.082 Sum_probs=77.4
Q ss_pred cHHHHHHHHHHhCCeEEec--chhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHH-hhcCCCCCceEEEee
Q 022615 22 PMWLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR-LSNGEPDKPLIVHVG 98 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~G 98 (294)
.+.-..+.+-+.+|.|+.= ++...+.+.+.- .+-|| ||-+ +..+|...-.+...- ...+.-+...|.|+|
T Consensus 83 sl~DTarvls~~~D~iviR~~~~~~~~~lA~~~-----~vPVI-Na~~-~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vG 155 (307)
T 2i6u_A 83 TLQDTAKVLSRYVDAIVWRTFGQERLDAMASVA-----TVPVI-NALS-DEFHPCQVLADLQTIAERKGALRGLRLSYFG 155 (307)
T ss_dssp CHHHHHHHHHHHEEEEEEECSSHHHHHHHHHHC-----SSCEE-ESCC-SSCCHHHHHHHHHHHHHHHSCCTTCEEEEES
T ss_pred CHHHHHHHHHHhCCEEEEecCChhHHHHHHhhC-----CCCEE-cCCC-CCcCccHHHHHHHHHHHHhCCcCCeEEEEEC
Confidence 3555677777788988873 444555555443 34455 4544 555554322211111 111223557899999
Q ss_pred cccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHH----HhhhcCCC--eEEEecccchhHHHHHhcCCEEEeecC
Q 022615 99 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REEL----EKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~----~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
.. ...-..-++.++..+ ++++.++|...+ .+.+ ++.++..+ +.+. +++.+.+..||++....+
T Consensus 156 D~-~~rva~Sl~~~~~~~-g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~-----~d~~eav~~aDvvy~~~w 226 (307)
T 2i6u_A 156 DG-ANNMAHSLLLGGVTA-GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVT-----ADAHAAAAGADVLVTDTW 226 (307)
T ss_dssp CT-TSHHHHHHHHHHHHT-TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEE-----SCHHHHHTTCSEEEECCS
T ss_pred CC-CcCcHHHHHHHHHHC-CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE-----ECHHHHhcCCCEEEecce
Confidence 86 344567788888888 799999986432 1122 22222222 3322 677889999999988654
No 208
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=45.25 E-value=40 Score=27.61 Aligned_cols=88 Identities=13% Similarity=-0.044 Sum_probs=50.7
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCC-CeEEEecccchhHHHHHhc--CCEEEeecC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYAS--GDVFVMPSE 168 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~--ad~~l~ps~ 168 (294)
..++.+|--.. +....+.++...++++++-+-+..... ..... .+... .++.+++.. .|+++..+.
T Consensus 6 ~rvgiiG~G~~--g~~~~~~~l~~~~~~~l~av~d~~~~~----~~~~~~~~~~~-----~~~~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 6 IKTGLAAFGMS--GQVFHAPFISTNPHFELYKIVERSKEL----SKERYPQASIV-----RSFKELTEDPEIDLIVVNTP 74 (362)
T ss_dssp EEEEESCCSHH--HHHTTHHHHHHCTTEEEEEEECSSCCG----GGTTCTTSEEE-----SCSHHHHTCTTCCEEEECSC
T ss_pred eEEEEECCCHH--HHHHHHHHHhhCCCeEEEEEEcCCHHH----HHHhCCCCceE-----CCHHHHhcCCCCCEEEEeCC
Confidence 45666664211 112245666778888876444322111 22222 23322 556677776 788888765
Q ss_pred CCCcchHHHHHHhcCCCEEeec
Q 022615 169 SETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 169 ~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
...-.-.+..++..|++|++-+
T Consensus 75 ~~~H~~~~~~al~aGkhVl~EK 96 (362)
T 3fhl_A 75 DNTHYEYAGMALEAGKNVVVEK 96 (362)
T ss_dssp GGGHHHHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHHHCCCeEEEec
Confidence 4443445778999999999853
No 209
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=45.01 E-value=34 Score=28.38 Aligned_cols=89 Identities=11% Similarity=0.164 Sum_probs=51.9
Q ss_pred CCceEEEeecccccccHHHHHHHHHhCC-CcEEE-EEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeec
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIA-FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~-~~~l~-i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
.+..++.+|.- . | ...++++.+++ +++++ |+..+. +..++..++.++.... ++.+++...|+++..+
T Consensus 6 ~~~rv~VvG~G-~--g-~~h~~a~~~~~~~~elvav~~~~~--~~a~~~a~~~gv~~~~-----~~~~l~~~~D~v~i~~ 74 (372)
T 4gmf_A 6 PKQRVLIVGAK-F--G-EMYLNAFMQPPEGLELVGLLAQGS--ARSRELAHAFGIPLYT-----SPEQITGMPDIACIVV 74 (372)
T ss_dssp -CEEEEEECST-T--T-HHHHHTTSSCCTTEEEEEEECCSS--HHHHHHHHHTTCCEES-----SGGGCCSCCSEEEECC
T ss_pred CCCEEEEEehH-H--H-HHHHHHHHhCCCCeEEEEEECCCH--HHHHHHHHHhCCCEEC-----CHHHHhcCCCEEEEEC
Confidence 45678888852 1 3 34677777776 47776 333333 4455566666665433 3334456788876644
Q ss_pred CCCC---c-chHHHHHHhcCCCEEee
Q 022615 168 ESET---L-GLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 168 ~~e~---~-~~~~~Ea~a~G~pvI~~ 189 (294)
.... . --....++..|++|++-
T Consensus 75 p~~~h~~~~~~~a~~al~aGkhVl~E 100 (372)
T 4gmf_A 75 RSTVAGGAGTQLARHFLARGVHVIQE 100 (372)
T ss_dssp C--CTTSHHHHHHHHHHHTTCEEEEE
T ss_pred CCcccchhHHHHHHHHHHcCCcEEEe
Confidence 3222 1 22367889999999975
No 210
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=44.93 E-value=1.1e+02 Score=24.03 Aligned_cols=150 Identities=14% Similarity=0.129 Sum_probs=73.5
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEeecccccc
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 104 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 104 (294)
..++..-.+.|.|++.+......+.+.. ..+-++..++..+.-.....+. ..++..+-+.... -
T Consensus 61 ~~~~l~~~~~DlIiai~t~aa~a~~~~~----~~iPVVf~~v~dp~~~~l~~~~--------~~~g~nvtGv~~~----~ 124 (302)
T 3lkv_A 61 IARQFVGENPDVLVGIATPTAQALVSAT----KTIPIVFTAVTDPVGAKLVKQL--------EQPGKNVTGLSDL----S 124 (302)
T ss_dssp HHHHHHTTCCSEEEEESHHHHHHHHHHC----SSSCEEEEEESCTTTTTSCSCS--------SSCCSSEEEEECC----C
T ss_pred HHHHHHhcCCcEEEEcCCHHHHHHHhhc----CCCCeEEEecCCcchhhhcccc--------cCCCCcEEEEECC----c
Confidence 3455666789999998877777666542 2344455555322111110000 1122222222222 2
Q ss_pred cHHHHHHHHHh-CCCc-EEEEEcCCcc------HHHHHhhhcCCCeE--EEecccchhHH----HHHhcCCEEEeecCC-
Q 022615 105 SLDFLKRVMDR-LPEA-RIAFIGDGPY------REELEKMFTGMPAV--FTGMLLGEELS----QAYASGDVFVMPSES- 169 (294)
Q Consensus 105 ~~~~l~~~~~~-~~~~-~l~i~G~~~~------~~~~~~~~~~~~v~--~~g~~~~~~~~----~~~~~ad~~l~ps~~- 169 (294)
.+..-++++.+ +|+. ++.++++... .+.+++.....++. .....+..++. .+....|+++.+...
T Consensus 125 ~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~ 204 (302)
T 3lkv_A 125 PVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNT 204 (302)
T ss_dssp CHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHH
T ss_pred CHHHHHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcc
Confidence 24444555544 4654 4545543321 23344444444533 33333444444 444677888876531
Q ss_pred --CCcchHHHHHHhcCCCEEeec
Q 022615 170 --ETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 170 --e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
........-+..+++||++..
T Consensus 205 ~~~~~~~i~~~~~~~~iPv~~~~ 227 (302)
T 3lkv_A 205 VASAIEGMIVAANQAKTPVFGAA 227 (302)
T ss_dssp HHHTHHHHHHHHHHTTCCEEESS
T ss_pred hhhHHHHHHHHHhhcCCceeecc
Confidence 122333445667899999864
No 211
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=44.63 E-value=1.1e+02 Score=24.59 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=53.3
Q ss_pred hhHHHHHhcCCEEEeecC-CCCcchHHHHHHhcC-CCEEeecCCCcccc--cccCC------------CCcceeecCCCC
Q 022615 151 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSSG-IPVVGVRAGGIPDI--IPEDQ------------DGKIGYLFNPGD 214 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~G-~pvI~~~~~~~~e~--~~~~~------------~~~~g~~~~~~d 214 (294)
..-...++.||++|.-.. .|++-.++++.+... +++|.... ++.-+ -.... ....-++.++.+
T Consensus 62 p~d~~~l~~ADlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~s~-~i~~~~~~~~~~~~~~~~~~~~~~~~DPHvWldp~n 140 (312)
T 2o1e_A 62 PKDIANIQDADLFVYNSEYMETWVPSAEKSMGQGHAVFVNASK-GIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVL 140 (312)
T ss_dssp HHHHHHHHHSSEEEESCTTTSTTHHHHHHTTCSSSCEEEETTT-TCCCCCC----------------CCCCCGGGGSHHH
T ss_pred HHHHHHHhcCCEEEEcCCChHhHHHHHHHhcccCCCeEEEecC-CcccccCcccccccccccccccCCCCCCCcccCHHH
Confidence 444567889999997654 678877888876533 44443221 11110 00000 012235566666
Q ss_pred HHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Q 022615 215 LDDCLSKLEPLLY--NQELRETMGQAARQEME 244 (294)
Q Consensus 215 ~~~l~~~i~~ll~--~~~~~~~~~~~~~~~~~ 244 (294)
...+++.|...|. ||+......+|+..+.+
T Consensus 141 ~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~ 172 (312)
T 2o1e_A 141 AQKEVKNITAQIVKQDPDNKEYYEKNSKEYIA 172 (312)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 6677777777664 78777777777776654
No 212
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=44.15 E-value=68 Score=24.14 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=47.5
Q ss_pred ecccccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhh--hcCCCeEEEec-----------------ccchhHH
Q 022615 98 GRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKM--FTGMPAVFTGM-----------------LLGEELS 154 (294)
Q Consensus 98 G~~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~--~~~~~v~~~g~-----------------~~~~~~~ 154 (294)
|..+.-.++..|++.+++. ...++.|+|.|.....+... ....++...|. ...+++.
T Consensus 61 G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ 140 (215)
T 2vt3_A 61 GKKGYGYNVDYLLSFFRKTLDQDEMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLE 140 (215)
T ss_dssp C-----EEHHHHHHHHHHHHHHC---CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHH
T ss_pred cCCcceEEhHHHHHHHHHHhCcCCCCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHH
Confidence 4333344455555554322 34678888887655544442 11111111111 1236788
Q ss_pred HHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC
Q 022615 155 QAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 193 (294)
Q Consensus 155 ~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~ 193 (294)
+++...|+++.......-....-....+|+..|..-.+.
T Consensus 141 eli~~~D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf~P~ 179 (215)
T 2vt3_A 141 QHVKDESVAILTVPAVAAQSITDRLVALGIKGILNFTPA 179 (215)
T ss_dssp HHCSSCCEEEECSCHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred HHHHhCCEEEEecCchhHHHHHHHHHHcCCCEEEEcCce
Confidence 888777988875432222244566778999977654443
No 213
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=43.69 E-value=57 Score=25.81 Aligned_cols=40 Identities=23% Similarity=0.103 Sum_probs=28.5
Q ss_pred hhHHHHHh--cCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 151 EELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 151 ~~~~~~~~--~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
.++.+++. ..|+++..+....-.-.+.+++..|++|++-+
T Consensus 55 ~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EK 96 (294)
T 1lc0_A 55 ISLEDALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEY 96 (294)
T ss_dssp CCHHHHHHCSSEEEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCHHHHhcCCCCCEEEEeCCcHhHHHHHHHHHHCCCcEEEeC
Confidence 56778887 46777776543333445678999999999853
No 214
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=43.56 E-value=67 Score=26.02 Aligned_cols=131 Identities=11% Similarity=-0.011 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhCCeEEe--cchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHH-HhhcCCCCCceEEEeec
Q 022615 23 MWLVIKFLHRAADLTLV--PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRW-RLSNGEPDKPLIVHVGR 99 (294)
Q Consensus 23 ~~~~~~~~~~~ad~ii~--~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~G~ 99 (294)
+.-..+.+-+.+|.|+. ......+.+.+.-. +-|| |+-| +...|...-.+... +...+.-+...|.|+|.
T Consensus 93 l~DTarvLs~~~D~iviR~~~~~~~~~lA~~~~-----vPVI-Nag~-~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD 165 (323)
T 3gd5_A 93 VRDTARVLGRYVDGLAIRTFAQTELEEYAHYAG-----IPVI-NALT-DHEHPCQVVADLLTIRENFGRLAGLKLAYVGD 165 (323)
T ss_dssp HHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHC-----SCEE-EEEC-SSCCHHHHHHHHHHHHHHHSCCTTCEEEEESC
T ss_pred HHHHHHHHHHhCCEEEEecCChhHHHHHHHhCC-----CCEE-eCCC-CCCCcHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence 44566777778999885 44555566655432 3344 5556 55555432211111 11112235678999998
Q ss_pred ccccccHHHHHHHHHhCCCcEEEEEcCCc---cHH---HHHhhhcC--CCeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 100 LGVEKSLDFLKRVMDRLPEARIAFIGDGP---YRE---ELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~~~~~l~i~G~~~---~~~---~~~~~~~~--~~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
. ..-..-++.++..+ ++++.+++... ... ..++..+. ..+.+. +++.+.+..||++....+
T Consensus 166 ~--~rva~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~-----~d~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 166 G--NNVAHSLLLGCAKV-GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQIL-----RDPFEAARGAHILYTDVW 234 (323)
T ss_dssp C--CHHHHHHHHHHHHH-TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEE-----SCHHHHHTTCSEEEECCC
T ss_pred C--CcHHHHHHHHHHHc-CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEE-----CCHHHHhcCCCEEEEece
Confidence 7 33456677777666 68999998532 211 12222221 223322 567889999999987654
No 215
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=43.02 E-value=57 Score=26.52 Aligned_cols=77 Identities=14% Similarity=0.077 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCCcchHHHHHHhcCCC
Q 022615 108 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIP 185 (294)
Q Consensus 108 ~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~~~~~~~Ea~a~G~p 185 (294)
..+.++...++++++-+.+....+.+.+.....++... .++.+++.. .|+++..+....-.-.+.+++..|++
T Consensus 17 ~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~-----~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~ 91 (349)
T 3i23_A 17 YHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFT-----ADLNELLTDPEIELITICTPAHTHYDLAKQAILAGKS 91 (349)
T ss_dssp TTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEE-----SCTHHHHSCTTCCEEEECSCGGGHHHHHHHHHHTTCE
T ss_pred HHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEE-----CCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHcCCE
Confidence 34566666788888755443322333333222344333 455666665 79888876544434456789999999
Q ss_pred EEee
Q 022615 186 VVGV 189 (294)
Q Consensus 186 vI~~ 189 (294)
|++-
T Consensus 92 Vl~E 95 (349)
T 3i23_A 92 VIVE 95 (349)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9973
No 216
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=42.73 E-value=1.1e+02 Score=25.79 Aligned_cols=96 Identities=16% Similarity=-0.034 Sum_probs=53.9
Q ss_pred CCceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhc---CCC---eEEEecccchhHHHHHh--cCC
Q 022615 90 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT---GMP---AVFTGMLLGEELSQAYA--SGD 161 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~---~~~---v~~~g~~~~~~~~~~~~--~ad 161 (294)
+...|+.+|--.- + ...+.++...++++++-+-+. ..+..++..+ ..+ +..... ..+++.+++. ..|
T Consensus 19 ~~~rvgiIG~G~~--g-~~h~~~l~~~~~~~lvav~d~-~~~~~~~~a~~~~~~g~~~~~~~~~-~~~~~~~ll~~~~vD 93 (444)
T 2ixa_A 19 KKVRIAFIAVGLR--G-QTHVENMARRDDVEIVAFADP-DPYMVGRAQEILKKNGKKPAKVFGN-GNDDYKNMLKDKNID 93 (444)
T ss_dssp CCEEEEEECCSHH--H-HHHHHHHHTCTTEEEEEEECS-CHHHHHHHHHHHHHTTCCCCEEECS-STTTHHHHTTCTTCC
T ss_pred CCceEEEEecCHH--H-HHHHHHHHhCCCcEEEEEEeC-CHHHHHHHHHHHHhcCCCCCceecc-CCCCHHHHhcCCCCC
Confidence 3456777763211 1 124567777888887644432 2222332221 112 222210 1247888887 478
Q ss_pred EEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 162 VFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 162 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+++..+....-.-.+.+|+..|++|++-.
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~EK 122 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGMEV 122 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECC
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEeC
Confidence 88876654444555778999999999853
No 217
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=42.10 E-value=39 Score=27.12 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=44.8
Q ss_pred HHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEe
Q 022615 109 LKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 188 (294)
Q Consensus 109 l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~ 188 (294)
+++++...++++++++.. ..+..++..+..++.. .+.+..++. -..+|+++..+....-...+.+++..|++|++
T Consensus 18 ~~~~l~~~~~~~l~v~d~--~~~~~~~~a~~~g~~~-~~~~~~~~l--~~~~D~V~i~tp~~~h~~~~~~al~~Gk~V~~ 92 (323)
T 1xea_A 18 YLPVLAQWPDIELVLCTR--NPKVLGTLATRYRVSA-TCTDYRDVL--QYGVDAVMIHAATDVHSTLAAFFLHLGIPTFV 92 (323)
T ss_dssp HHHHHTTSTTEEEEEECS--CHHHHHHHHHHTTCCC-CCSSTTGGG--GGCCSEEEECSCGGGHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCceEEEEeC--CHHHHHHHHHHcCCCc-cccCHHHHh--hcCCCEEEEECCchhHHHHHHHHHHCCCeEEE
Confidence 567777778888884443 3344444444333321 012222321 26789998876544445556789999999987
Q ss_pred e
Q 022615 189 V 189 (294)
Q Consensus 189 ~ 189 (294)
-
T Consensus 93 E 93 (323)
T 1xea_A 93 D 93 (323)
T ss_dssp E
T ss_pred e
Confidence 4
No 218
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=41.91 E-value=65 Score=21.05 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=36.6
Q ss_pred ecccchhHHHHHhcCCEEEeecCCCCcchHHHHHH--hcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHH
Q 022615 146 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM--SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 146 g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~--a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~ 223 (294)
...+-.++...+..+|+++........ ..-++.. -.|+||+.-+.-.+ | .-|.+++.+.+.
T Consensus 38 ~~~~~~~~~~~~~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~pv~~I~~~~y------------~----~~d~~~vl~~i~ 100 (109)
T 2l2q_A 38 EAIAETRLSEVVDRFDVVLLAPQSRFN-KKRLEEITKPKGIPIEIINTIDY------------G----TMNGEKVLQLAI 100 (109)
T ss_dssp EEECSTTHHHHTTTCSEEEECSCCSSH-HHHHHHHHHHHTCCEEECCHHHH------------H----HTCHHHHHHHHH
T ss_pred EEecHHHHHhhcCCCCEEEECCccHHH-HHHHHHHhcccCCCEEEEChHHh------------c----cCCHHHHHHHHH
Confidence 444557777778899998876543221 2223333 25899975322111 1 126777777776
Q ss_pred HHhh
Q 022615 224 PLLY 227 (294)
Q Consensus 224 ~ll~ 227 (294)
+++.
T Consensus 101 ~~l~ 104 (109)
T 2l2q_A 101 NAFN 104 (109)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6653
No 219
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=41.87 E-value=1.1e+02 Score=23.22 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=62.4
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHH---hcCCCEEeec
Q 022615 118 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAM---SSGIPVVGVR 190 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~---a~G~pvI~~~ 190 (294)
+.++.++.+.+. ...+...+...+......-+..+..+.+.. .|++++-... +.-|..+++.+ ...+|||.-.
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt 208 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVT 208 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 357788876543 334444444334333333333666666654 5787764332 23344555544 3478887643
Q ss_pred CCCccccc-ccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 191 AGGIPDII-PEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 191 ~~~~~e~~-~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.....+.. .....|-.+++..|.+.+++.+.|..++.
T Consensus 209 ~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 209 ANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp SSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 22212111 11145778899999999999999988764
No 220
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=41.66 E-value=34 Score=28.12 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=51.1
Q ss_pred CCceEEEeeccccccc----HHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEE
Q 022615 90 DKPLIVHVGRLGVEKS----LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVF 163 (294)
Q Consensus 90 ~~~~i~~~G~~~~~k~----~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~ 163 (294)
+++.|+.+|.-.--+. +..+..++...++++++=+-+. ..+..++..++.++. ....++.+++.. .|++
T Consensus 24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~-~~~~a~~~a~~~g~~----~~y~d~~ell~~~~iDaV 98 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEA-NAGLAEARAGEFGFE----KATADWRALIADPEVDVV 98 (393)
T ss_dssp CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC---TTHHHHHHHHTCS----EEESCHHHHHHCTTCCEE
T ss_pred CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECC-CHHHHHHHHHHhCCC----eecCCHHHHhcCCCCcEE
Confidence 3456777764221111 1222334445567777655432 222333333333321 012567777765 5788
Q ss_pred EeecCCCCcchHHHHHHhcCCCEEee
Q 022615 164 VMPSESETLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 164 l~ps~~e~~~~~~~Ea~a~G~pvI~~ 189 (294)
+..+....-.-.+.+|+.+|++|++-
T Consensus 99 ~IatP~~~H~~~a~~al~aGkhVl~E 124 (393)
T 4fb5_A 99 SVTTPNQFHAEMAIAALEAGKHVWCE 124 (393)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred EECCChHHHHHHHHHHHhcCCeEEEc
Confidence 77665444455578999999999974
No 221
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=41.55 E-value=67 Score=20.51 Aligned_cols=107 Identities=17% Similarity=0.278 Sum_probs=56.3
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecc-cchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh---cCCCEEee-c
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGML-LGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 190 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~-~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~-~ 190 (294)
++.++.+.+. ...+.......+....... +.++....+. ..|++++-... +.-|..+++.+. .+.|+|.- .
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (120)
T 1tmy_A 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSA 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEEC
T ss_pred eEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeC
Confidence 4556655432 2334444443344322222 2244444443 36887765432 223455555553 46777653 3
Q ss_pred CCCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 191 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 191 ~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
...........+.|..+++..|.+.+++.+.+..++
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 84 MGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp TTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 332221111114577889999999999999987764
No 222
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=41.01 E-value=69 Score=20.49 Aligned_cols=105 Identities=25% Similarity=0.319 Sum_probs=54.8
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCC-cchHHHHHH---hcCCCEEee-cC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESET-LGLVVLEAM---SSGIPVVGV-RA 191 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~-~~~~~~Ea~---a~G~pvI~~-~~ 191 (294)
++.++.+.+. ...+.......+......-+.++....+.. .|++++-....+ -|..+++.+ ..+.|+|.- ..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1dc7_A 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAH 84 (124)
T ss_dssp CCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCS
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecC
Confidence 4555554432 334444444333222222233555555543 477765433221 122233333 346776643 32
Q ss_pred CC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 192 GG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 192 ~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.. ....+ ..|..+++..|.+.+++...+..++.
T Consensus 85 ~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 85 SDLDAAVSAY---QQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp TTSTTTTSSC---TTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---hcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 22 22333 56778889999999999999987653
No 223
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=40.81 E-value=1.5e+02 Score=24.83 Aligned_cols=109 Identities=21% Similarity=0.156 Sum_probs=59.3
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh-----cCCCEEe-e
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS-----SGIPVVG-V 189 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a-----~G~pvI~-~ 189 (294)
+++|+.+.+. ...+...+...+......-+.++..+.+. ..|++++-... +.-|..+++.+. ..+|||. |
T Consensus 3 ~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt 82 (459)
T 1w25_A 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLIT 82 (459)
T ss_dssp EEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEE
Confidence 4555655432 33344444333333222223345444443 35888775443 233556666664 2578765 3
Q ss_pred cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 ~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
............+.|-.+++..|.+.+++...|..++..
T Consensus 83 ~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~ 121 (459)
T 1w25_A 83 ALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 121 (459)
T ss_dssp CSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 333222111111457788999999999999999988754
No 224
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=40.77 E-value=1.5e+02 Score=24.16 Aligned_cols=133 Identities=13% Similarity=0.146 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHhCCeEEec--chhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhh--cC-CCCCceEEE
Q 022615 22 PMWLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLS--NG-EPDKPLIVH 96 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~--~~-~~~~~~i~~ 96 (294)
.+.-..+.+-+.+|.|+.= ++...+.+.++-+ +-|| ||-+ +..+|...-.+...-.. .+ .-+...|.|
T Consensus 88 sl~DTarvLs~~~D~IviR~~~~~~~~~lA~~~~-----vPVI-Na~~-~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~ 160 (333)
T 1duv_G 88 SIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAS-----VPVW-NGLT-NEFHPTQLLADLLTMQEHLPGKAFNEMTLVY 160 (333)
T ss_dssp CHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHS-----SCEE-ESCC-SSCCHHHHHHHHHHHHHHSTTCCGGGCEEEE
T ss_pred cHHHHHHHHHHhCCEEEEEcCCchHHHHHHHhCC-----CCeE-cCCC-CCCCchHHHHHHHHHHHHhcCCCCCCcEEEE
Confidence 4556677777889998874 4445556655432 3344 4655 55666433222221111 12 224578999
Q ss_pred eecccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHH----HhhhcCCC--eEEEecccchhHHHHHhcCCEEEeecC
Q 022615 97 VGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REEL----EKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 97 ~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~----~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
+|.. ...-..-++.++..+ ++++.+++...+ .+.+ ++.++..+ +.+. +++.+.+..||++....+
T Consensus 161 vGD~-~~~va~Sl~~~~~~~-G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~-----~d~~eav~~aDvvytd~w 233 (333)
T 1duv_G 161 AGDA-RNNMGNSMLEAAALT-GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLT-----EDVAKGVEGADFIYTDVW 233 (333)
T ss_dssp ESCT-TSHHHHHHHHHHHHH-CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEE-----SCHHHHHTTCSEEEECCS
T ss_pred ECCC-ccchHHHHHHHHHHc-CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE-----ECHHHHhCCCCEEEeCCc
Confidence 9986 234456777777777 789999985322 1122 22333333 3322 677889999999988655
No 225
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=40.50 E-value=79 Score=24.82 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=58.4
Q ss_pred CCCcEEEEEcCCccHHHHHhhhcCCCeEEE------ecccchhHHHHHhcCCEEEeecC--CCCcchHHHHHHhcCCCEE
Q 022615 116 LPEARIAFIGDGPYREELEKMFTGMPAVFT------GMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVV 187 (294)
Q Consensus 116 ~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~------g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~pvI 187 (294)
.++-++.++|.-+......+. ..++..+ |..+.+....++..||+++.... ..+.=-.+++..-.+..+|
T Consensus 139 ~~g~kV~vIG~~P~i~~~l~~--~~~v~V~d~~p~~g~~p~~~~e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~~a~~vv 216 (270)
T 2h1q_A 139 VKGKKVGVVGHFPHLESLLEP--ICDLSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNARRIT 216 (270)
T ss_dssp TTTSEEEEESCCTTHHHHHTT--TSEEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTSSEEE
T ss_pred cCCCEEEEECCCHHHHHHHhC--CCCEEEEECCCCCCCCChHHHHHHhhcCCEEEEEeeeeecCCHHHHHHhCccCCeEE
Confidence 356789999986644433322 2233333 23344567789999999998743 2222223566665554544
Q ss_pred e--ecCCCcccccccCCCCcceeecCCCCHHHHHHHHHH
Q 022615 188 G--VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEP 224 (294)
Q Consensus 188 ~--~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ 224 (294)
. +..+-.++++...-+.-.|..+. |++.+.+.|..
T Consensus 217 l~GPS~p~~P~lf~~Gv~~l~G~~V~--D~~~~~~~i~~ 253 (270)
T 2h1q_A 217 LVGPGTPLAPVLFEHGLQELSGFMVK--DNARAFRIVAG 253 (270)
T ss_dssp EESTTCCCCGGGGGTTCSEEEEEEES--CHHHHHHHHTT
T ss_pred EEecChhhhHHHHhcCcCEEEEeEec--CHHHHHHHHHc
Confidence 3 23455666662112223555555 78877777643
No 226
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=40.49 E-value=57 Score=25.73 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=52.3
Q ss_pred hhHHHHHhcCCEEEeecC-CCCcchHHHHHHhc-CCCEEeecCCCcccc-cccCC------------CCcceeecCCCCH
Q 022615 151 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSS-GIPVVGVRAGGIPDI-IPEDQ------------DGKIGYLFNPGDL 215 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~-~e~~~~~~~Ea~a~-G~pvI~~~~~~~~e~-~~~~~------------~~~~g~~~~~~d~ 215 (294)
..-..-++.||+++.-.. .|++-.++++.+.. +.++|.... ++.-. ..... ....-++.++.+.
T Consensus 50 p~d~~~l~~Adlvv~~G~~lE~w~~~~~~~~~~~~~~~v~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~ 128 (284)
T 3cx3_A 50 ANDIAAIYDADVFVYHSHTLESWAGSLDPNLKKSKVKVLEASE-GMTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEKA 128 (284)
T ss_dssp HHHHHHHHHSSEEEESCTTTSCTTTTCCTTTTTCCCEEEETTT-TCCCCBCCC-------------CCBCCCGGGSHHHH
T ss_pred HHHHHHHHhCCEEEEcCCCcHhHHHHHHHhcccCCCeEEEccC-CccccccCCcccccccccccCCCCCCCCcccCHHHH
Confidence 344477889999987653 67777777776643 344443221 11100 00000 0122345556666
Q ss_pred HHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Q 022615 216 DDCLSKLEPLLY--NQELRETMGQAARQEME 244 (294)
Q Consensus 216 ~~l~~~i~~ll~--~~~~~~~~~~~~~~~~~ 244 (294)
..+++.|...|. ||+......+|+..+.+
T Consensus 129 ~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~ 159 (284)
T 3cx3_A 129 GEEAQIIADKLSEVDSEHKETYQKNAQAFIK 159 (284)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 677777777664 78777777777776654
No 227
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=39.64 E-value=86 Score=24.78 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=24.0
Q ss_pred hhHHHHHh--cCCEEEeecCCCCcchHHHHHHhcCCCEE
Q 022615 151 EELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPVV 187 (294)
Q Consensus 151 ~~~~~~~~--~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI 187 (294)
.++.++.. ..|+++.....+...-.+.|++..|++++
T Consensus 54 ~sl~el~~~~~~D~viI~tP~~~~~~~~~ea~~~Gi~~i 92 (288)
T 2nu8_A 54 NTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLI 92 (288)
T ss_dssp SSHHHHHHHHCCCEEEECCCGGGHHHHHHHHHHTTCSEE
T ss_pred CCHHHHhhcCCCCEEEEecCHHHHHHHHHHHHHCCCCEE
Confidence 34455555 67887776655566666777777777753
No 228
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=39.27 E-value=54 Score=24.67 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=19.4
Q ss_pred cCCEEEeecCCC---CcchHHHHHHhcCCCEEee
Q 022615 159 SGDVFVMPSESE---TLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 159 ~ad~~l~ps~~e---~~~~~~~Ea~a~G~pvI~~ 189 (294)
.+.-+|.....+ .-..+++.|++.|++||..
T Consensus 41 ~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~ 74 (229)
T 1l0b_A 41 ETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSY 74 (229)
T ss_dssp SCCEEEECBCTTSEECCCHHHHHHHHTTCEEEET
T ss_pred CCCEEEEcCCccccccccHHHHHHHHCCCcEecH
Confidence 344455443221 2357888888899988865
No 229
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=38.82 E-value=1e+02 Score=24.64 Aligned_cols=74 Identities=11% Similarity=-0.014 Sum_probs=44.0
Q ss_pred HHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCCcchHHHHHHhcCCCEE
Q 022615 110 KRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIPVV 187 (294)
Q Consensus 110 ~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~~~~~~~Ea~a~G~pvI 187 (294)
+.++.. +++.++-+-+ ...+..++..+..++. ....++.+++.. +|+++..+....-...+.+++..|++|+
T Consensus 17 ~~~l~~-~~~~~vav~d-~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~ 90 (332)
T 2glx_A 17 IGAIRA-TGGEVVSMMS-TSAERGAAYATENGIG----KSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVL 90 (332)
T ss_dssp HHHHHH-TTCEEEEEEC-SCHHHHHHHHHHTTCS----CCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred hHHhhc-CCCeEEEEEC-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCeEE
Confidence 455555 7777663332 2233344444333321 112567777774 8999887654444455678999999998
Q ss_pred ee
Q 022615 188 GV 189 (294)
Q Consensus 188 ~~ 189 (294)
+-
T Consensus 91 ~e 92 (332)
T 2glx_A 91 CE 92 (332)
T ss_dssp EC
T ss_pred Ee
Confidence 74
No 230
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=38.67 E-value=87 Score=25.08 Aligned_cols=91 Identities=11% Similarity=-0.037 Sum_probs=48.3
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcC-CccHHHHHhhhcCC-CeEEEecccchhHHHHH--------hcCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGD-GPYREELEKMFTGM-PAVFTGMLLGEELSQAY--------ASGD 161 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~-~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~--------~~ad 161 (294)
..++.+|.-+. --...+.++... +..++-+.+ .+... ...... .+...... +++.+++ ...|
T Consensus 4 irvgiIG~gG~--i~~~h~~~l~~~-~~~lvav~d~~~~~~---~~~~~~~~~~~~~~~--~~ll~~~~~l~~~~~~~vD 75 (318)
T 3oa2_A 4 KNFALIGAAGY--IAPRHMRAIKDT-GNCLVSAYDINDSVG---IIDSISPQSEFFTEF--EFFLDHASNLKRDSATALD 75 (318)
T ss_dssp CEEEEETTTSS--SHHHHHHHHHHT-TCEEEEEECSSCCCG---GGGGTCTTCEEESSH--HHHHHHHHHHTTSTTTSCC
T ss_pred eEEEEECCCcH--HHHHHHHHHHhC-CCEEEEEEcCCHHHH---HHHhhCCCCcEECCH--HHHHHhhhhhhhccCCCCc
Confidence 45666664111 113455666665 555554443 22221 222222 34444333 5554321 4578
Q ss_pred EEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 162 VFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 162 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+++..+....-.-.+.+|+.+|++|++-+
T Consensus 76 ~V~I~tP~~~H~~~~~~al~aGkhVl~EK 104 (318)
T 3oa2_A 76 YVSICSPNYLHYPHIAAGLRLGCDVICEK 104 (318)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEC
Confidence 88887654444455788999999999753
No 231
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox binding protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Probab=37.58 E-value=76 Score=26.09 Aligned_cols=83 Identities=14% Similarity=0.090 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCcEEEEEcCCccH------HHHHhhhc-C-CCeEE--EecccchhHHHHHhc---CCEEEeecCCC-Cc
Q 022615 107 DFLKRVMDRLPEARIAFIGDGPYR------EELEKMFT-G-MPAVF--TGMLLGEELSQAYAS---GDVFVMPSESE-TL 172 (294)
Q Consensus 107 ~~l~~~~~~~~~~~l~i~G~~~~~------~~~~~~~~-~-~~v~~--~g~~~~~~~~~~~~~---ad~~l~ps~~e-~~ 172 (294)
...++.+++.|+-+++++|-|-+- ..+.+... . .|+.+ ...+...-+..+++. .|.+|.|.... -.
T Consensus 128 lDAl~iA~~nP~k~VVFfaiGFETTaP~tA~~i~~a~~~~l~Nfsvl~~h~l~pPa~~all~~~~~idgfi~PGHVstIi 207 (372)
T 2z1d_A 128 FDTYRIAKENPDKTVVHFSPGFETTTAPAAGMLNVAAQEELENFKIYSVHRLTPPAVEVLLKQGTVFQGLIAPGHVSTII 207 (372)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECHHHHHHHHHHHHHHHHHTCSSEEEEEEEECHHHHHHHHHHTSCCCSEEEEEHHHHHHH
T ss_pred HHHHHHHHHCCCCeEEEEeeChhhccHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCcCcEEEecCeeeEEe
Confidence 344566677788888888765322 12222211 1 25333 233333556677764 68999998743 45
Q ss_pred chHHHHHH--hcCCCEEee
Q 022615 173 GLVVLEAM--SSGIPVVGV 189 (294)
Q Consensus 173 ~~~~~Ea~--a~G~pvI~~ 189 (294)
|...+|.+ -+|+|+|++
T Consensus 208 G~~~y~~l~~~y~~P~VVa 226 (372)
T 2z1d_A 208 GVKGWEYLTEKYGIPQVVA 226 (372)
T ss_dssp TTHHHHHHHHHHCCCEEEE
T ss_pred ccchhHHHHHHcCCCEEEc
Confidence 78888877 468999865
No 232
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=36.77 E-value=13 Score=28.78 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=24.2
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCC
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 193 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~ 193 (294)
+++.+++ .+|++|-.+..+.. ...++ +..|+|+|+...|.
T Consensus 47 ~dl~~l~-~~DVvIDft~p~a~-~~~~~-l~~g~~vVigTTG~ 86 (243)
T 3qy9_A 47 QHIADVK-GADVAIDFSNPNLL-FPLLD-EDFHLPLVVATTGE 86 (243)
T ss_dssp SCTTTCT-TCSEEEECSCHHHH-HHHHT-SCCCCCEEECCCSS
T ss_pred CCHHHHh-CCCEEEEeCChHHH-HHHHH-HhcCCceEeCCCCC
Confidence 3444445 89998855442222 12334 88999998765553
No 233
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=36.39 E-value=88 Score=22.41 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=22.8
Q ss_pred cCC-EEEeecCCCCcchHHHHHH-hcCCCEEe
Q 022615 159 SGD-VFVMPSESETLGLVVLEAM-SSGIPVVG 188 (294)
Q Consensus 159 ~ad-~~l~ps~~e~~~~~~~Ea~-a~G~pvI~ 188 (294)
.+| +++.|.-+.-.+..+.+|+ +.++|+|=
T Consensus 83 ~~dgIIINpgAyTHtSvAlrDAL~~v~~P~VE 114 (167)
T 3kip_A 83 GVGFVVINAGAYTHTSVGIRDALLGTAIPFIE 114 (167)
T ss_dssp TCCEEEEECGGGGGTCHHHHHHHHHTTCCEEE
T ss_pred CccEEEEccccceeccHHHHHHHHhcCCCEEE
Confidence 345 6667877777888999988 56899884
No 234
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=36.30 E-value=1.1e+02 Score=24.89 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=44.9
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEe--ccc-----------chhHHHHHhcCCEEEe--ecCC---CCcchHHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTG--MLL-----------GEELSQAYASGDVFVM--PSES---ETLGLVVLEA 179 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g--~~~-----------~~~~~~~~~~ad~~l~--ps~~---e~~~~~~~Ea 179 (294)
+-++-|+|-|.--..+.+.++..+..+.+ .-+ .+++.++++.||++++ |... .-++...+..
T Consensus 173 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~ 252 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAK 252 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHH
T ss_pred CCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhh
Confidence 35788999887777777766655433333 221 1478899999999886 3322 2244556666
Q ss_pred HhcCCCEEee
Q 022615 180 MSSGIPVVGV 189 (294)
Q Consensus 180 ~a~G~pvI~~ 189 (294)
|--|.-+|-+
T Consensus 253 mk~gailIN~ 262 (345)
T 4g2n_A 253 IPEGAVVINI 262 (345)
T ss_dssp SCTTEEEEEC
T ss_pred CCCCcEEEEC
Confidence 6666655543
No 235
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=36.24 E-value=26 Score=25.30 Aligned_cols=39 Identities=13% Similarity=0.008 Sum_probs=24.8
Q ss_pred hhHHHHHhcCCEEEeecC-CCCcchH---HHHHHhcCCCEEeec
Q 022615 151 EELSQAYASGDVFVMPSE-SETLGLV---VLEAMSSGIPVVGVR 190 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~-~e~~~~~---~~Ea~a~G~pvI~~~ 190 (294)
.++ +.+..||++|.-.. .+.=+.+ +-=|.+.|+||++-.
T Consensus 74 ~D~-~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 74 NDL-TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHH-HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHH-HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 344 45789999887422 2222333 444789999999873
No 236
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=35.30 E-value=1.5e+02 Score=22.56 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=89.3
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCC------CeEEEecccchhHHHHHhcCCEEEe
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM------PAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~------~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
.-++|-|.++....-..+++-+-. .+..+.++|.... +..+.. .-.|.|.++..++.+-=+.|-+.+.
T Consensus 182 ~d~iyggsfrsg~re~kmve~lfd-tgl~ieffg~~~~-----~qfknp~~pwt~~pvf~gki~~~~~~~~ns~a~a~~i 255 (351)
T 1jg7_A 182 LDVIYGGSFRSGQRESKMVEFLFD-TGLNIEFFGNARE-----KQFKNPKYPWTKAPVFTGKIPMNMVSEKNSQAIAALI 255 (351)
T ss_dssp EEEEEECCCGGGTTHHHHHHHHSS-CSSCEEEESSCCG-----GGCCCTTSCCSSCCEEEECCCGGGHHHHHTTEEEEEE
T ss_pred eeeeeccccccCchHHHHHHHHHh-cCcceeeecchhH-----HhccCCCCCCcCCCccCCcCCHHHHhhccccceEEEE
Confidence 458899988766655555554432 3567788886532 122222 3578999999999887777766555
Q ss_pred ecC---CC-CcchHHHHHHhcCCCEEe-ecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHHH
Q 022615 166 PSE---SE-TLGLVVLEAMSSGIPVVG-VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAAR 240 (294)
Q Consensus 166 ps~---~e-~~~~~~~Ea~a~G~pvI~-~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~ 240 (294)
... .+ -....+.|+||+-...+. +....-..++ + +.-+.++ +-+++.+.+.++-.++..+.++-+-..
T Consensus 256 ~gdk~y~~n~it~rvwe~~as~av~~~d~~fd~~~~i~---~--~a~fyv~--nr~elid~in~~k~~~~~r~e~l~~qh 328 (351)
T 1jg7_A 256 IGDKNYNDNFITLRVWETMASDAVMLIDEEFDTKHRII---N--DARFYVN--NRAELIDRVNELKHSDVLRKEMLSIQH 328 (351)
T ss_dssp CCCGGGTTTCCCHHHHHHHTSSSEEEEEGGGCTTCCSC---S--CGGGEEC--SHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred eccccccCCeecHHHHHHHhhhhHhhhhcccCcccccc---c--CceeEec--CHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 321 22 346678999998766544 3333333444 2 2335555 899999999999888887777655444
Q ss_pred HHHH
Q 022615 241 QEME 244 (294)
Q Consensus 241 ~~~~ 244 (294)
..++
T Consensus 329 ~il~ 332 (351)
T 1jg7_A 329 DILN 332 (351)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 237
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=34.88 E-value=55 Score=26.54 Aligned_cols=74 Identities=18% Similarity=0.117 Sum_probs=43.3
Q ss_pred HHH-HHHhCCCcEEEEE-cCCccHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCCcchHHHHHHhcCC
Q 022615 109 LKR-VMDRLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGI 184 (294)
Q Consensus 109 l~~-~~~~~~~~~l~i~-G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~~~~~~~Ea~a~G~ 184 (294)
.+. ++...++++++-+ ...+... +......++... +++.+++.. .|+++..+....-.-.+.+++..|+
T Consensus 18 ~~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~~~~~~~-----~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk 90 (345)
T 3f4l_A 18 HLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIYSHIHFT-----SDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGK 90 (345)
T ss_dssp THHHHTTCTTTEEEEEEECSSCCGG--GGSGGGTTCEEE-----SCTHHHHTCTTEEEEEECSCGGGHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCeEEEEEEcCCHhHH--HHHHhcCCCceE-----CCHHHHhcCCCCCEEEEcCChHHHHHHHHHHHHcCC
Confidence 344 4466678888744 4333322 222222233322 556667776 7888876654444455779999999
Q ss_pred CEEee
Q 022615 185 PVVGV 189 (294)
Q Consensus 185 pvI~~ 189 (294)
+|++-
T Consensus 91 ~Vl~E 95 (345)
T 3f4l_A 91 NVLVE 95 (345)
T ss_dssp EEEEC
T ss_pred cEEEe
Confidence 99974
No 238
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=34.83 E-value=1.8e+02 Score=23.51 Aligned_cols=133 Identities=15% Similarity=0.187 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHhCCeEEec--chhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHH-hhcCCCCCceEEEee
Q 022615 22 PMWLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR-LSNGEPDKPLIVHVG 98 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~G 98 (294)
.+.-..+.+-+.+|.|+.= ++...+.+.+.- .+-|| ||-+ +...|...-.+...- ...+.-+...|.|+|
T Consensus 102 sl~DTarvLs~~~D~iviR~~~~~~~~~lA~~~-----~vPVI-Na~~-~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vG 174 (325)
T 1vlv_A 102 SLEDTARVLGRMVDAIMFRGYKQETVEKLAEYS-----GVPVY-NGLT-DEFHPTQALADLMTIEENFGRLKGVKVVFMG 174 (325)
T ss_dssp CHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHH-----CSCEE-ESCC-SSCCHHHHHHHHHHHHHHHSCSTTCEEEEES
T ss_pred CHHHHHHHHHHhCCEEEEECCChHHHHHHHHhC-----CCCEE-eCCC-CCCCcHHHHHHHHHHHHHhCCcCCcEEEEEC
Confidence 4556777888889998874 455555555543 23344 4655 355554322211111 111222567899999
Q ss_pred cccccccHHHHHHHHHhCCCcEEEEEcCCcc---HHH---HHhhhcCCC--eEEEecccchhHHHHHhcCCEEEeecC
Q 022615 99 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY---REE---LEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~---~~~---~~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
.. ...-..-++.++..+ ++++.++|...+ .+. .++.++..+ +.+. +++.+.+..||++....+
T Consensus 175 D~-~~rva~Sl~~~~~~~-G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~-----~d~~eav~~aDvvyt~~w 245 (325)
T 1vlv_A 175 DT-RNNVATSLMIACAKM-GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFT-----SNLEEALAGADVVYTDVW 245 (325)
T ss_dssp CT-TSHHHHHHHHHHHHT-TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEE-----SCHHHHHTTCSEEEECCC
T ss_pred CC-CcCcHHHHHHHHHHC-CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE-----cCHHHHHccCCEEEeccc
Confidence 84 234467788888888 799999985322 111 222222323 2222 677889999999988655
No 239
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=34.72 E-value=88 Score=19.86 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=55.1
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh--cCCCEEee-cCC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS--SGIPVVGV-RAG 192 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a--~G~pvI~~-~~~ 192 (294)
++.++.+.+. ...+.......+......-+..+....+. ..|++++-... +.-|..+++.+. ...|+|.- ...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARS 82 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCC
Confidence 4555655432 23444444444433332222233333332 46887764332 233555666654 35676643 332
Q ss_pred CcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 193 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 193 ~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
.........+.|..+++..|.+.+++...+..++
T Consensus 83 ~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (121)
T 1zh2_A 83 EESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 (121)
T ss_dssp SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHH
Confidence 2211111114467788999999999999987765
No 240
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=34.56 E-value=1.2e+02 Score=21.57 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=42.3
Q ss_pred cCCEEEeecCCCCc-chHHHHHHh---cCCCEEee-cCCCcc---cccccCCCCcceeecCCCCHHHHHHHHHHHhhChH
Q 022615 159 SGDVFVMPSESETL-GLVVLEAMS---SGIPVVGV-RAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 230 (294)
Q Consensus 159 ~ad~~l~ps~~e~~-~~~~~Ea~a---~G~pvI~~-~~~~~~---e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~ 230 (294)
..|++++-....+. |. +.+.+. ..+|||.- ...... +.+ +.|..+++..|.+.+++...|..++....
T Consensus 52 ~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~~~~~~a~---~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 52 PVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVALVEYESPAVLSQII---ELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp CCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEEECCCSHHHHHHHH---HHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEEEcCCChHHHHHHH---HcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 56888775443333 33 555554 45777653 332221 222 44778889999999999999988876433
No 241
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=34.36 E-value=32 Score=25.43 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=25.8
Q ss_pred HHHHHhcCCEEEeecCCCCcchH--HHHHHh------cCCCEEeecCC
Q 022615 153 LSQAYASGDVFVMPSESETLGLV--VLEAMS------SGIPVVGVRAG 192 (294)
Q Consensus 153 ~~~~~~~ad~~l~ps~~e~~~~~--~~Ea~a------~G~pvI~~~~~ 192 (294)
-.-+...||++|.-. .|+|+- ++|++. .++||+.-+..
T Consensus 91 k~~~~~~sda~IvlP--GG~GTl~El~e~lt~~q~g~~~kPvvll~~~ 136 (191)
T 1t35_A 91 KAKMSELADGFISMP--GGFGTYEELFEVLCWAQIGIHQKPIGLYNVN 136 (191)
T ss_dssp HHHHHHHCSEEEECS--CCHHHHHHHHHHHHTTSCSSCCCCEEEECGG
T ss_pred HHHHHHHCCEEEEeC--CCccHHHHHHHHHHHHHhCCCCCCEEEecCC
Confidence 335667788877633 345543 789995 78999988763
No 242
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=34.11 E-value=61 Score=23.93 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=54.4
Q ss_pred EEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCCcchHHHHHHh--c-CCCEEee-cCCC
Q 022615 121 IAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMS--S-GIPVVGV-RAGG 193 (294)
Q Consensus 121 l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~~~~~~~Ea~a--~-G~pvI~~-~~~~ 193 (294)
+.++.+.+. ...+...+...++.....-+.++....+.. .|++++| +.-|..+++.+. . .+|||.- ....
T Consensus 3 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilp---~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 79 (223)
T 2hqr_A 3 VLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSDNPT 79 (223)
T ss_dssp EEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEEEC---CTTHHHHHHHHHHHCTTSEEEEEESSCC
T ss_pred EEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEEeC---CCCHHHHHHHHHhCCCCCcEEEEECCCC
Confidence 445544332 233344443333222222233555555543 4777733 223444544443 3 6777653 3322
Q ss_pred cccccccCCCCcceeecCCC-CHHHHHHHHHHHhhC
Q 022615 194 IPDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYN 228 (294)
Q Consensus 194 ~~e~~~~~~~~~~g~~~~~~-d~~~l~~~i~~ll~~ 228 (294)
..........|..+++..|. +.+++..+|..++..
T Consensus 80 ~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 80 SEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp HHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred HHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 21111111446788899998 999999999888754
No 243
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=34.09 E-value=1.9e+02 Score=23.56 Aligned_cols=128 Identities=13% Similarity=0.042 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCCeEEecc--hhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchH---HHHHhhcCCCCCceEEEee
Q 022615 24 WLVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVG 98 (294)
Q Consensus 24 ~~~~~~~~~~ad~ii~~s--~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G 98 (294)
.-..+.+-+.+|.|+.=. ....+.+.+.- .+-|| |+-+ +...|...-.+ .+... +.-+...|.|+|
T Consensus 116 ~DTarvLs~y~D~IviR~~~~~~~~~lA~~~-----~vPVI-Nag~-~~~HPtQaLaDl~TI~E~~--G~l~glkva~vG 186 (340)
T 4ep1_A 116 SDTAKVLSHYIDGIMIRTFSHADVEELAKES-----SIPVI-NGLT-DDHHPCQALADLMTIYEET--NTFKGIKLAYVG 186 (340)
T ss_dssp THHHHHHHHHCSEEEEECSCHHHHHHHHHHC-----SSCEE-EEEC-SSCCHHHHHHHHHHHHHHH--SCCTTCEEEEES
T ss_pred HHHHHHHHHhCCEEEEecCChhHHHHHHHhC-----CCCEE-eCCC-CCCCcHHHHHHHHHHHHHh--CCCCCCEEEEEC
Confidence 345666777799888743 34455555543 23344 4545 34555322111 11122 223567899999
Q ss_pred cccccccHHHHHHHHHhCCCcEEEEEcCCcc---HH---HHHhhhcCC--CeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 99 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY---RE---ELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~---~~---~~~~~~~~~--~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
.. ..-..-++.++..+ ++++.+++...+ .. .+++.++.. .+.+ .+++.+.+..||++....+
T Consensus 187 D~--~nva~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~-----~~d~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 187 DG--NNVCHSLLLASAKV-GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEI-----LHNPELAVNEADFIYTDVW 256 (340)
T ss_dssp CC--CHHHHHHHHHHHHH-TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEE-----ESCHHHHHTTCSEEEECCC
T ss_pred CC--chhHHHHHHHHHHc-CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE-----ECCHHHHhCCCCEEEecCc
Confidence 76 33456677777777 689999985322 11 122222222 2332 2567889999999987654
No 244
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=33.68 E-value=87 Score=23.15 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=58.3
Q ss_pred cEEEEEcCCcc-HHHHHhhhc-CCCeEEEeccc-c-hhHHHHH--hcCCEEEeecC-CCCcchHHHHHHh----cCCCEE
Q 022615 119 ARIAFIGDGPY-REELEKMFT-GMPAVFTGMLL-G-EELSQAY--ASGDVFVMPSE-SETLGLVVLEAMS----SGIPVV 187 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~-~~~v~~~g~~~-~-~~~~~~~--~~ad~~l~ps~-~e~~~~~~~Ea~a----~G~pvI 187 (294)
.++.|+.+.+. ...+...+. ..++...+... . +.+..++ ...|++++-.. .+.-|..+++.+. ..+|||
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii 87 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEV 87 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEE
Confidence 45666665442 333444443 23444433221 1 2222222 23588877543 2333555555543 367876
Q ss_pred e-ecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 188 G-VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 188 ~-~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
. |..............|..|++..|.+.+++..+|..++..
T Consensus 88 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 88 IINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp EEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred EEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 5 3322222211111567889999999999999999998763
No 245
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=33.39 E-value=1.7e+02 Score=23.76 Aligned_cols=74 Identities=16% Similarity=0.172 Sum_probs=46.1
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCC--eEEEeccc--------chhHHHHHhcCCEEEe--ecCCC---CcchHHHHHHhc
Q 022615 118 EARIAFIGDGPYREELEKMFTGMP--AVFTGMLL--------GEELSQAYASGDVFVM--PSESE---TLGLVVLEAMSS 182 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~~--------~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea~a~ 182 (294)
+-++-|+|-|..-..+.+.+...+ |.....-+ ..++.++++.||++++ |...+ -++...++.|--
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~ 250 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGP 250 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCC
Confidence 457889998877777766666554 33332221 2478899999999886 32222 245567888888
Q ss_pred CCCEEeecC
Q 022615 183 GIPVVGVRA 191 (294)
Q Consensus 183 G~pvI~~~~ 191 (294)
|..+|....
T Consensus 251 gailIN~aR 259 (340)
T 4dgs_A 251 EGIVVNVAR 259 (340)
T ss_dssp TCEEEECSC
T ss_pred CCEEEECCC
Confidence 877775543
No 246
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=33.17 E-value=97 Score=24.33 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=58.3
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEE------ecccchhHHHHHhcCCEEEeecC--CCCcchHHHHHHhcCCCEE--
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFT------GMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVV-- 187 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~------g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~pvI-- 187 (294)
+-++.++|.-+.-+.+.+... .+..+ |..+......++..||+++.... ..+.=-.++|..-.+..||
T Consensus 141 g~kV~vIG~fP~i~~~~~~~~--~l~V~E~~p~~g~~p~~~~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~~a~~vvl~ 218 (270)
T 3l5o_A 141 GKKVGVVGHFPHLESLLEPIC--DLSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNARRITLV 218 (270)
T ss_dssp TSEEEEESCCTTHHHHHTTTS--EEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTSSEEEEE
T ss_pred CCEEEEECCchhHHHHHhcCC--CEEEEECCCCCCCCChhHHHHhhccCCEEEEEeehhhcCCHHHHHhhCCCCCEEEEE
Confidence 457899998776555544332 22222 23455677789999999998743 2222234566665555443
Q ss_pred eecCCCcccccccCCCCcceeecCCCCHHHHHHHHH
Q 022615 188 GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLE 223 (294)
Q Consensus 188 ~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~ 223 (294)
.+..+-.++++...-+.-.|..+. |++.+.+.+.
T Consensus 219 GPStp~~P~lf~~Gv~~laG~~V~--d~~~~~~~i~ 252 (270)
T 3l5o_A 219 GPGTPLAPVLFEHGLQELSGFMVK--DNARAFRIVA 252 (270)
T ss_dssp STTCCCCGGGGGTTCSEEEEEEES--CHHHHHHHHT
T ss_pred CCCchhhHHHHhcCcCEEEEEEEc--CHHHHHHHHh
Confidence 334556666662112223555555 7777766664
No 247
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=32.85 E-value=39 Score=25.55 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=36.0
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
.++.+-|-.+ ..+.+.+.+...+..+.. + ...+..+|.+.. .-..+++.|++.|+|||..+
T Consensus 17 ~~i~~SG~~~~~~~~l~~~i~~lGg~v~~-----~----~~~~THLI~~~~--~rT~K~l~A~~~g~~IVs~~ 78 (219)
T 3sqd_A 17 PFVLFTGFEPVQVQQYIKKLYILGGEVAE-----S----AQKCTHLIASKV--TRTVKFLTAISVVKHIVTPE 78 (219)
T ss_dssp CEEEECSCCHHHHHHHHHHHHHTTCEECS-----S----GGGCSEEECSSC--CCCHHHHHHTTTCSEEECHH
T ss_pred eEEEEeCCChHHHHHHHHHHHHCCCEEeC-----C----CCCceEEEECCC--CCCHHHHHHHHcCCCEecHH
Confidence 4555555332 223455555555544332 1 156777777642 22368999999999999764
No 248
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=32.57 E-value=1.9e+02 Score=22.98 Aligned_cols=59 Identities=10% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHHhC----CCcEEEEEcCCcc-HHHHHhhhcCCC--eEEEecccchhHHHHHhcCCEEEeecC
Q 022615 109 LKRVMDRL----PEARIAFIGDGPY-REELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 109 l~~~~~~~----~~~~l~i~G~~~~-~~~~~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
++++++.. .+.+.+++|.+.. ...+..++...+ |+..... ..++.+.++.||+++....
T Consensus 146 i~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-t~~L~~~~~~ADIVI~Avg 211 (288)
T 1b0a_A 146 IVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF-TKNLRHHVENADLLIVAVG 211 (288)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS-CSCHHHHHHHCSEEEECSC
T ss_pred HHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC-chhHHHHhccCCEEEECCC
Confidence 45555544 5689999998853 445555555444 5555433 3789999999999998654
No 249
>2a6q_A Antitoxin YEFM; YEFM, antitoxin, addiction modules, RNAse, inhibitor, toxin inhibitor/toxin complex; 2.05A {Escherichia coli} SCOP: d.306.1.1
Probab=32.24 E-value=80 Score=19.49 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=29.9
Q ss_pred HHHHHHh-cCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhChHHHHHHHHHH
Q 022615 175 VVLEAMS-SGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAA 239 (294)
Q Consensus 175 ~~~Ea~a-~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~ 239 (294)
.+++... .|-||+.+..+... . .+++..+.+.+.+. ..++.++.....+.+.-
T Consensus 18 ~~~~~v~~~~epviItr~g~~~-a----------vlvs~e~y~~l~e~-l~ll~~p~~~~~L~~~~ 71 (86)
T 2a6q_A 18 ATMMKAVEDHAPILITRQNGEA-C----------VLMSLEEYNSLEET-AYLLRSPANARRLMDSI 71 (86)
T ss_dssp HHHHHHHHHTCCEEEECTTSCE-E----------EEEEHHHHHHHHHH-HHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEeCCCcc-E----------EEEcHHHHHHHHHH-HHHhcCHHHHHHHHHHH
Confidence 3555554 58999988765422 2 24554456666555 34556666555544433
No 250
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=31.96 E-value=32 Score=24.49 Aligned_cols=36 Identities=22% Similarity=0.107 Sum_probs=23.6
Q ss_pred HHHhcCCEEEeecC-CCCcchHHHH---HHhcCCCEEeec
Q 022615 155 QAYASGDVFVMPSE-SETLGLVVLE---AMSSGIPVVGVR 190 (294)
Q Consensus 155 ~~~~~ad~~l~ps~-~e~~~~~~~E---a~a~G~pvI~~~ 190 (294)
+.+..||++|.-.. .+.=+.+.+| |.+.|+|||+-.
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~ 113 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVI 113 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEE
Confidence 55799999886532 2222344444 789999998864
No 251
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=31.62 E-value=1.1e+02 Score=20.03 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=58.3
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCC-CeEEEecc-cchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh---cCCCEEee
Q 022615 119 ARIAFIGDGPY-REELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV 189 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~-~v~~~g~~-~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~ 189 (294)
.+++++.+.+. ...+....... .+...... +..+..+.+. ..|++++-... +.-|..+++.+. .+.|+|.-
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~l 83 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIV 83 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEE
Confidence 34566655432 23333333322 22222222 2244444443 46888875443 233555666654 35777653
Q ss_pred -cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 -RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 -~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
..... .+.+ +.|..+++..|.+.+++...|..++..
T Consensus 84 s~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 84 TTFKRPGYFEKAV---VNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp ESCCCHHHHHHHH---HTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred ecCCCHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 33321 2233 457789999999999999999888654
No 252
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=31.25 E-value=2e+02 Score=22.85 Aligned_cols=76 Identities=11% Similarity=-0.027 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCcEEEEEcC-CccHHHHHhhhcCC-CeEEEecccchhHHHHH-------hcCCEEEeecCCCCcchHHHH
Q 022615 108 FLKRVMDRLPEARIAFIGD-GPYREELEKMFTGM-PAVFTGMLLGEELSQAY-------ASGDVFVMPSESETLGLVVLE 178 (294)
Q Consensus 108 ~l~~~~~~~~~~~l~i~G~-~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~-------~~ad~~l~ps~~e~~~~~~~E 178 (294)
..+.++... +.+++-+-+ .+... ...... .+...... +++.+++ ...|+++..+....-.-.+.+
T Consensus 18 ~h~~~l~~~-~~~lvav~d~~~~~~---~~~~~~~~~~~~~~~--~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~ 91 (312)
T 3o9z_A 18 RHLKAIKEV-GGVLVASLDPATNVG---LVDSFFPEAEFFTEP--EAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRM 91 (312)
T ss_dssp HHHHHHHHT-TCEEEEEECSSCCCG---GGGGTCTTCEEESCH--HHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHH
T ss_pred HHHHHHHhC-CCEEEEEEcCCHHHH---HHHhhCCCCceeCCH--HHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHH
Confidence 455666665 456554443 22221 222222 34444333 5655443 457888877654444555789
Q ss_pred HHhcCCCEEee
Q 022615 179 AMSSGIPVVGV 189 (294)
Q Consensus 179 a~a~G~pvI~~ 189 (294)
|+.+|++|++-
T Consensus 92 al~aGkhVl~E 102 (312)
T 3o9z_A 92 ALRLGANALSE 102 (312)
T ss_dssp HHHTTCEEEEC
T ss_pred HHHCCCeEEEE
Confidence 99999999974
No 253
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=31.24 E-value=1.1e+02 Score=19.79 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=58.0
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCe-EEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHhc-----CCCEEe
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPA-VFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS-----GIPVVG 188 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a~-----G~pvI~ 188 (294)
.++.++.+.+. ...+...+...+. .....-+.++....+.. .|++++-... +.-|..+++.+.. +.|+|.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 86 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFII 86 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 45666665432 2334444443333 22222223555555543 5777764432 3345567777643 466665
Q ss_pred e-cCCCcc---cccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 189 V-RAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 189 ~-~~~~~~---e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
- ...... +.+ +.|..+++..|.+.+++..+|..++.
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 87 LTAQGDRALVQKAA---ALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CCSCCCHHHHHHHH---HHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 3 332221 223 44677889999999999999987753
No 254
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=31.18 E-value=1.6e+02 Score=21.92 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=19.7
Q ss_pred hhHHHHHhcCCEEEeecCCCCc--chHHHHHHhcCCCEEe
Q 022615 151 EELSQAYASGDVFVMPSESETL--GLVVLEAMSSGIPVVG 188 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~--~~~~~Ea~a~G~pvI~ 188 (294)
.++.+.+..--+-++||..-.| ...+--|+..|.....
T Consensus 97 ~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tG 136 (212)
T 3av3_A 97 PTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETG 136 (212)
T ss_dssp HHHHHHTTTCEEEEESSCTTSSCSTTHHHHHHHHTCSEEE
T ss_pred HHHHhhhcCCEEEEecCcCCCCCCcCHHHHHHHcCCCeEE
Confidence 4444555444455555542222 3446667777766543
No 255
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=31.13 E-value=1.2e+02 Score=20.22 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=55.4
Q ss_pred EEEEEcCCccH-HHHHhhhc--CCCeEEEecc-cchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh---cCCCEEee
Q 022615 120 RIAFIGDGPYR-EELEKMFT--GMPAVFTGML-LGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV 189 (294)
Q Consensus 120 ~l~i~G~~~~~-~~~~~~~~--~~~v~~~g~~-~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~ 189 (294)
+++|+.+.+.. ..+...+. ..++...+.. +..+....+.. .|++++-... +.-|..+++.+. .+.|+|.-
T Consensus 4 ~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~l 83 (141)
T 3cu5_A 4 RILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFM 83 (141)
T ss_dssp EEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 46666654432 33343332 1232223222 22455555543 5888765442 334555555553 46777653
Q ss_pred -cCCC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 190 -RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 190 -~~~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.... ..+.+ ..|..+++..|.+.+++.++|..++.
T Consensus 84 s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 84 SGYSDKEYLKAAI---KFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp CCSTTTCCC---------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHH---hCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3222 22333 56778999999999999999988764
No 256
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=30.76 E-value=64 Score=23.86 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=33.7
Q ss_pred CcEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCC---CcchHHHHHHhcCCCEEee
Q 022615 118 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE---TLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 118 ~~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e---~~~~~~~Ea~a~G~pvI~~ 189 (294)
++.+.+-|-.+ ..+.+.+++...+..+...++ ..+.-+|.....+ .-..+.+.|++.|++||..
T Consensus 4 ~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~--------~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~ 71 (214)
T 1t15_A 4 RMSMVVSGLTPEEFMLVYKFARKHHITLTNLIT--------EETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSY 71 (214)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCC--------TTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEET
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhCCEEeCccC--------CCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCH
Confidence 34455555332 233455555544444443332 3345555544221 2357788889999998865
No 257
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=30.48 E-value=1.2e+02 Score=20.32 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=43.6
Q ss_pred cCCEEEeecC-CCCcchHHHHHHh---cCCCEEee-cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhChH
Q 022615 159 SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 230 (294)
Q Consensus 159 ~ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~-~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~~ 230 (294)
..|++++-.. .+.-|..+++.+. ..+|||.- ..... .+.+ +.|..+++..+.+.+++.++|..++....
T Consensus 61 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~---~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQAL---QQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHH---HTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHH---HcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 3577776544 3334555655554 35666653 33322 2233 55778899999999999999999987543
No 258
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=30.29 E-value=92 Score=24.78 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHh-CCeEEec--chhhHHH-HHHhccCCcCceEEeeccccCCCCCCCccchHHHH-HhhcCCCCCceEEE
Q 022615 22 PMWLVIKFLHRA-ADLTLVP--SVAIGKD-LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRW-RLSNGEPDKPLIVH 96 (294)
Q Consensus 22 ~~~~~~~~~~~~-ad~ii~~--s~~~~~~-~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ 96 (294)
.+.-..+.+-+. +|.|+.= ++...+. +.+.- .+-|| |+-|.+..+|...-.+... +...+.-+...|.|
T Consensus 78 sl~DTarvls~~~~D~iviR~~~~~~~~~~la~~~-----~vPVI-NAG~g~~~HPtQaLaDl~Ti~e~~g~l~gl~va~ 151 (291)
T 3d6n_B 78 SFFDTLKTFEGLGFDYVVFRVPFVFFPYKEIVKSL-----NLRLV-NAGDGTHQHPSQGLIDFFTIKEHFGEVKDLRVLY 151 (291)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESSCCCSCHHHHHTC-----SSEEE-EEEETTTBCHHHHHHHHHHHHHHHSCCTTCEEEE
T ss_pred cHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHhC-----CCCEE-eCccCCCcCcHHHHHHHHHHHHHhCCcCCcEEEE
Confidence 455667777788 5998873 3444444 55432 34444 5334455555432221111 11112235678999
Q ss_pred eecccccccHHHHHHHHHhCCCcEEEEEcCCccHH-HHHhhhcCCCeEEEecccchhHHHHHhcCCEEEe
Q 022615 97 VGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYRE-ELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 97 ~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
+|.+....-..-++.++..+ ++++.++|...+.. .+. +.++.+ .+++.+.+..||++..
T Consensus 152 vGDl~~~rva~Sl~~~~~~~-g~~v~~~~P~~~~p~~~~----~~g~~~-----~~d~~eav~~aDvvy~ 211 (291)
T 3d6n_B 152 VGDIKHSRVFRSGAPLLNMF-GAKIGVCGPKTLIPRDVE----VFKVDV-----FDDVDKGIDWADVVIW 211 (291)
T ss_dssp ESCCTTCHHHHHHHHHHHHT-TCEEEEESCGGGSCTTGG----GGCEEE-----ESSHHHHHHHCSEEEE
T ss_pred ECCCCCCchHHHHHHHHHHC-CCEEEEECCchhCCchHH----HCCCEE-----EcCHHHHhCCCCEEEE
Confidence 99986666678888999888 79999998633211 111 223332 3778899999999888
No 259
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=30.21 E-value=1.2e+02 Score=24.45 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=33.1
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCC--eEEEeccc-----------chhHHHHHhcCCEEEe
Q 022615 118 EARIAFIGDGPYREELEKMFTGMP--AVFTGMLL-----------GEELSQAYASGDVFVM 165 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~~-----------~~~~~~~~~~ad~~l~ 165 (294)
+-++-|+|-|..-..+.+.+...+ |.....-+ .+++.++++.||++++
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l 199 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLIN 199 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEE
Confidence 467899999887777777666554 33332211 1478899999999886
No 260
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=30.10 E-value=1.2e+02 Score=19.95 Aligned_cols=107 Identities=11% Similarity=0.205 Sum_probs=58.7
Q ss_pred cEEEEEcCCc-cHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CC--CcchHHHHHHh---cCCCEEee
Q 022615 119 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SE--TLGLVVLEAMS---SGIPVVGV 189 (294)
Q Consensus 119 ~~l~i~G~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e--~~~~~~~Ea~a---~G~pvI~~ 189 (294)
.+++|+.+.+ ....+...+...++.....-+.++..+.+.. .|++++-.. .+ .-|..+++.+. ..+|+|.-
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~ 86 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVM 86 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEE
Confidence 4566665543 2334445554444433322222444343333 356665433 23 33555555544 36777653
Q ss_pred -cCCCc---ccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 190 -RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 190 -~~~~~---~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
..... .+.+ +.|..+++..|.+.+++..+|..++..
T Consensus 87 s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 87 ASSSDIPTAVRAM---RASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp ESSCCHHHHHHHH---HTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHH---HcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 33322 2233 557788999999999999999988754
No 261
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=30.07 E-value=2.3e+02 Score=23.28 Aligned_cols=136 Identities=13% Similarity=0.125 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHhCCeEEecch------------hhHHHHHHhccCCcCceEEeeccccCCCCCCCccchH---HHHHhh
Q 022615 21 KPMWLVIKFLHRAADLTLVPSV------------AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLS 85 (294)
Q Consensus 21 ~~~~~~~~~~~~~ad~ii~~s~------------~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~---~~~~~~ 85 (294)
-.++-..+.+-+.+|.|++=.. ...+.+.++- .+-||. +-|-. .|...-.+ .+...+
T Consensus 113 Esl~DTarvLs~y~D~IviR~~~~~~~~~~~~~~~~~~~lA~~~-----~vPVIN-ag~g~--HPtQaLaDl~TI~E~~g 184 (359)
T 1zq6_A 113 EHIAEVARVLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYS-----PVPVIN-METIT--HPCQELAHALALQEHFG 184 (359)
T ss_dssp EEHHHHHHHHHHHCSEEEEECCCCSSCHHHHTTCHHHHHHHHHC-----SSCEEE-SSSSC--CHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHhCcEEEEeccccccccccccchHHHHHHHHhC-----CCCEEe-CCCCC--CcHHHHHHHHHHHHHhC
Confidence 3455667777888999888544 3445555543 334554 44433 55322111 112222
Q ss_pred cCCCCCce--EEEeeccccc--ccHHHHHHHHHhCCCcEEEEEcCC-cc--HHHH----HhhhcCCCeEEEecccchhHH
Q 022615 86 NGEPDKPL--IVHVGRLGVE--KSLDFLKRVMDRLPEARIAFIGDG-PY--REEL----EKMFTGMPAVFTGMLLGEELS 154 (294)
Q Consensus 86 ~~~~~~~~--i~~~G~~~~~--k~~~~l~~~~~~~~~~~l~i~G~~-~~--~~~~----~~~~~~~~v~~~g~~~~~~~~ 154 (294)
...-+... |.|+|.+..- .-..-++.++..+ ++++.+++.. .+ .+.+ ++.++..+..+. -..++.
T Consensus 185 ~~~l~glkvvva~vGDl~~~~nrva~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~~~~~~a~~~g~~v~---~~~d~~ 260 (359)
T 1zq6_A 185 TPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRM-GMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQ---VSHDID 260 (359)
T ss_dssp SSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHT-TCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEE---EECCHH
T ss_pred CCcccCCeeEEEEEecccccccchHHHHHHHHHHc-CCEEEEEcCccccCCCHHHHHHHHHHHHHcCCeEE---EECCHH
Confidence 10013344 8999987544 5577888888888 6899999865 22 1122 222222221111 125678
Q ss_pred HHHhcCCEEEeecC
Q 022615 155 QAYASGDVFVMPSE 168 (294)
Q Consensus 155 ~~~~~ad~~l~ps~ 168 (294)
+.+..||++....+
T Consensus 261 eav~~aDvVyt~~w 274 (359)
T 1zq6_A 261 SAYAGADVVYAKSW 274 (359)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhcCCCEEEECCc
Confidence 89999999887654
No 262
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=29.70 E-value=1.2e+02 Score=20.00 Aligned_cols=108 Identities=12% Similarity=0.143 Sum_probs=58.3
Q ss_pred CcEEEEEcCCcc-HHHHHhhhcCC-CeEEEecc-cchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHhc---CCCEEe
Q 022615 118 EARIAFIGDGPY-REELEKMFTGM-PAVFTGML-LGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS---GIPVVG 188 (294)
Q Consensus 118 ~~~l~i~G~~~~-~~~~~~~~~~~-~v~~~g~~-~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a~---G~pvI~ 188 (294)
..+++|+.+.+. ...+...+... ++...+.. +..+....+.. .|++++-... +.-|..+++.+.. ..|||.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 88 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVF 88 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEE
Confidence 356666665442 23333333322 34333222 22444444443 5777765432 3345666776654 344543
Q ss_pred -ecCC-CcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 189 -VRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 189 -~~~~-~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
+... ...+.+ ..|..+++..+.+.+++...|..++..
T Consensus 89 ~s~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 89 ITAWKEHAVEAF---ELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EESCCTTHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHH---hCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 3322 222223 457788899999999999999887653
No 263
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=29.62 E-value=1.2e+02 Score=19.99 Aligned_cols=70 Identities=16% Similarity=0.054 Sum_probs=40.4
Q ss_pred HHHhcCCEEEeecCCCC-----cchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 155 QAYASGDVFVMPSESET-----LGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 155 ~~~~~ad~~l~ps~~e~-----~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
.-++.||+++......+ .---+-.|...|+|+|+-...+..+.- .. -...+--+-.-+.+.+.++|...+
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P-~~-l~~~a~~iV~Wn~~~I~~aI~~~~ 108 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVP-PE-LEAVSSEVVGWNPHCIRDALEDAL 108 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCC-TT-HHHHCSEEECSCHHHHHHHHHHHH
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCC-HH-HHhhCceeccCCHHHHHHHHHhcc
Confidence 66788998887654333 223356788899999987654433211 00 011111111226788988888764
No 264
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=29.49 E-value=1.2e+02 Score=19.70 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=60.0
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCC-CeEEEecc-cchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh----cCCCEEe
Q 022615 119 ARIAFIGDGPY-REELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS----SGIPVVG 188 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~-~v~~~g~~-~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a----~G~pvI~ 188 (294)
.+++++.+.+. ...+...+... +....+.. +.++....+. ..|++++-... +.-|..+++.+. ...|+|.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ 82 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIM 82 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEE
Confidence 35566665442 34445555443 44444332 2245555544 36888775443 333555555553 3456654
Q ss_pred -ecCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 189 -VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 189 -~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
+............+.|..+++..|.+.+++.+.|..++..
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 83 LTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp EEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 3333222111111457788999999999999999888754
No 265
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=29.44 E-value=1.7e+02 Score=21.48 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=58.7
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh--cCCCEEeecC-
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS--SGIPVVGVRA- 191 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a--~G~pvI~~~~- 191 (294)
.+++|+.+.+. ...+...+...+......-+.++....+. ..|++++-... +.-|..+++.+. .++|+|.-..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCC
Confidence 35666665432 23344444333433332223345544443 46888775432 333455555543 4678765322
Q ss_pred CC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 192 GG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 192 ~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
.. ..+.+ +.|..+++..|.+.+++..+|..++..
T Consensus 85 ~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 85 DSEIDKVVGL---ELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp HHHHHHHHHH---HHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 21 12222 346778889999999999999988753
No 266
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=29.13 E-value=1.4e+02 Score=24.38 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=45.4
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCCC--eEEEeccc-------------chhHHHHHhcCCEEEe--ecCCC---CcchHH
Q 022615 117 PEARIAFIGDGPYREELEKMFTGMP--AVFTGMLL-------------GEELSQAYASGDVFVM--PSESE---TLGLVV 176 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~~-------------~~~~~~~~~~ad~~l~--ps~~e---~~~~~~ 176 (294)
.+-++-|+|-|.--..+.+.+...+ |.....-+ .+++.++++.||++++ |...+ -++...
T Consensus 163 ~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~ 242 (351)
T 3jtm_A 163 EGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKEL 242 (351)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHH
T ss_pred cCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHH
Confidence 3467889998877666666665544 33333211 1368899999999886 33222 245566
Q ss_pred HHHHhcCCCEEee
Q 022615 177 LEAMSSGIPVVGV 189 (294)
Q Consensus 177 ~Ea~a~G~pvI~~ 189 (294)
+..|--|.-+|-+
T Consensus 243 l~~mk~gailIN~ 255 (351)
T 3jtm_A 243 IGKLKKGVLIVNN 255 (351)
T ss_dssp HHHSCTTEEEEEC
T ss_pred HhcCCCCCEEEEC
Confidence 7777666666644
No 267
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=28.86 E-value=91 Score=25.10 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCcEEEEEcCCc---cHHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCCcchHHHHHHhc
Q 022615 108 FLKRVMDRLPEARIAFIGDGP---YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMSS 182 (294)
Q Consensus 108 ~l~~~~~~~~~~~l~i~G~~~---~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~~~~~~~Ea~a~ 182 (294)
..++++ .++++++-+.+.. ..+.+.+...+.++... ..+++.+++.. .|+++..+....-.-.+.+|+..
T Consensus 16 ~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~a 90 (337)
T 3ip3_A 16 YALEGL--DEECSITGIAPGVPEEDLSKLEKAISEMNIKPK---KYNNWWEMLEKEKPDILVINTVFSLNGKILLEALER 90 (337)
T ss_dssp HHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCE---ECSSHHHHHHHHCCSEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCc---ccCCHHHHhcCCCCCEEEEeCCcchHHHHHHHHHHC
Confidence 344444 5777776554322 23455555444332111 12566666664 78888766433333447889999
Q ss_pred CCCEEeec
Q 022615 183 GIPVVGVR 190 (294)
Q Consensus 183 G~pvI~~~ 190 (294)
|++|++-+
T Consensus 91 GkhVl~EK 98 (337)
T 3ip3_A 91 KIHAFVEK 98 (337)
T ss_dssp TCEEEECS
T ss_pred CCcEEEeC
Confidence 99999753
No 268
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=28.85 E-value=2.3e+02 Score=22.80 Aligned_cols=132 Identities=16% Similarity=0.099 Sum_probs=77.4
Q ss_pred cHHHHHHHHHHhCCeEEec--chhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHH-hhcCCCCCceEEEee
Q 022615 22 PMWLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR-LSNGEPDKPLIVHVG 98 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~G 98 (294)
.+.-..+.+-+.+|.|+.= ++...+.+.+.- .+-|| ||-+ +..+|...-.+...- ...+.-+...|.|+|
T Consensus 90 sl~DTarvls~~~D~iviR~~~~~~~~~lA~~~-----~vPVI-Na~~-~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vG 162 (315)
T 1pvv_A 90 TIADTARVLSRYVDAIMARVYDHKDVEDLAKYA-----TVPVI-NGLS-DFSHPCQALADYMTIWEKKGTIKGVKVVYVG 162 (315)
T ss_dssp CHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHC-----SSCEE-EEEC-SSCCHHHHHHHHHHHHHHHSCCTTCEEEEES
T ss_pred CHHHHHHHHHHhCcEEEEecCchHHHHHHHHhC-----CCCEE-cCCC-CCCCcHHHHHHHHHHHHHhCCcCCcEEEEEC
Confidence 4556677777889988873 455555555543 34444 4555 355554322211111 111223567899999
Q ss_pred cccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHH----HhhhcCCC--eEEEecccchhHHHHHhcCCEEEeecC
Q 022615 99 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REEL----EKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~----~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
.. ..-..-++.++..+ ++++.++|...+ .+.+ ++.++..+ +.+. +++.+.+..||++....+
T Consensus 163 D~--~rva~Sl~~~~~~~-g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~-----~d~~eav~~aDvvy~~~w 232 (315)
T 1pvv_A 163 DG--NNVAHSLMIAGTKL-GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELL-----HDPVKAVKDADVIYTDVW 232 (315)
T ss_dssp CC--CHHHHHHHHHHHHT-TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEE-----SCHHHHTTTCSEEEECCC
T ss_pred CC--cchHHHHHHHHHHC-CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE-----eCHHHHhCCCCEEEEcce
Confidence 86 44467788888888 799999986432 1222 22222223 3222 678899999999988655
No 269
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=28.82 E-value=80 Score=25.07 Aligned_cols=71 Identities=11% Similarity=0.229 Sum_probs=41.7
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCC--eEEEeccc--------chhHHHHHhcCCEEEe--ecCCCC---cchHHHHHHhc
Q 022615 118 EARIAFIGDGPYREELEKMFTGMP--AVFTGMLL--------GEELSQAYASGDVFVM--PSESET---LGLVVLEAMSS 182 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~~--------~~~~~~~~~~ad~~l~--ps~~e~---~~~~~~Ea~a~ 182 (294)
+-++-|+|-|..-..+.+.+...+ |.....-+ .+++.++++.||++++ |...+. ++...++.|--
T Consensus 122 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ 201 (290)
T 3gvx_A 122 GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARK 201 (290)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCT
T ss_pred cchheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhc
Confidence 468889998876666666555443 33332211 1378899999999886 322222 33445555555
Q ss_pred CCCEEe
Q 022615 183 GIPVVG 188 (294)
Q Consensus 183 G~pvI~ 188 (294)
|.-+|-
T Consensus 202 gailIN 207 (290)
T 3gvx_A 202 NLTIVN 207 (290)
T ss_dssp TCEEEE
T ss_pred CceEEE
Confidence 554543
No 270
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=28.79 E-value=1.5e+02 Score=20.83 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=23.7
Q ss_pred hcCC-EEEeecCCCCcchHHHHHH----hcCCCEEe
Q 022615 158 ASGD-VFVMPSESETLGLVVLEAM----SSGIPVVG 188 (294)
Q Consensus 158 ~~ad-~~l~ps~~e~~~~~~~Ea~----a~G~pvI~ 188 (294)
..+| +++.|.-+...+..+.+|+ +.++|+|=
T Consensus 69 ~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VE 104 (151)
T 3u80_A 69 DEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLME 104 (151)
T ss_dssp HHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEE
T ss_pred hcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEE
Confidence 3445 6777888888899999994 45999984
No 271
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=28.78 E-value=1e+02 Score=24.88 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=43.4
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEec--c-----------cchhHHHHHhcCCEEEe--ecCC---CCcchHHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGM--L-----------LGEELSQAYASGDVFVM--PSES---ETLGLVVLEA 179 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~--~-----------~~~~~~~~~~~ad~~l~--ps~~---e~~~~~~~Ea 179 (294)
+-++-|+|-|.....+.+.+...+....++ - ...++.++++.||++++ |... .-++...++.
T Consensus 137 gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~ 216 (324)
T 3evt_A 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQ 216 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHT
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhc
Confidence 467889998877666666655444333222 1 12467899999999886 3322 2234455666
Q ss_pred HhcCCCEEee
Q 022615 180 MSSGIPVVGV 189 (294)
Q Consensus 180 ~a~G~pvI~~ 189 (294)
|--|.-+|-.
T Consensus 217 mk~gailIN~ 226 (324)
T 3evt_A 217 TKQQPMLINI 226 (324)
T ss_dssp CCSCCEEEEC
T ss_pred CCCCCEEEEc
Confidence 6656555543
No 272
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Probab=28.66 E-value=1.2e+02 Score=25.19 Aligned_cols=82 Identities=11% Similarity=-0.001 Sum_probs=44.2
Q ss_pred HHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEEEe--c-c-----------cchhHHHHH--hcCCEEEeecCCCCc
Q 022615 109 LKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTG--M-L-----------LGEELSQAY--ASGDVFVMPSESETL 172 (294)
Q Consensus 109 l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g--~-~-----------~~~~~~~~~--~~ad~~l~ps~~e~~ 172 (294)
.++++++.++++++-+..+...+.+.+++++.+..+.. . - ..+.+.++. ..+|+++........
T Consensus 19 tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~~~~~~D~Vv~AivG~aG 98 (376)
T 3a06_A 19 TLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEMLEALKPDITMVAVSGFSG 98 (376)
T ss_dssp HHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHHHHHCCSEEEECCCSTTH
T ss_pred HHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHhcCCCCCEEEEEeeCHHH
Confidence 44555555556655443355556666655543322221 0 0 113344555 458988876443222
Q ss_pred chHHHHHHhcCCCEEeec
Q 022615 173 GLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 173 ~~~~~Ea~a~G~pvI~~~ 190 (294)
=...++|+.+|+.|...+
T Consensus 99 L~ptlaAi~aGK~vaLAN 116 (376)
T 3a06_A 99 LRAVLASLEHSKRVCLAN 116 (376)
T ss_dssp HHHHHHHHHHCSEEEECC
T ss_pred HHHHHHHHHCCCEEEEeC
Confidence 344688999999998743
No 273
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=28.65 E-value=1.4e+02 Score=24.46 Aligned_cols=70 Identities=13% Similarity=-0.028 Sum_probs=41.6
Q ss_pred cEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 119 ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 119 ~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
..+.+++.. .+..+++............+.+++.++++.+|+++......--...+..++..|+.++...
T Consensus 39 ~~V~V~~R~--~~~a~~la~~~~~~~~d~~~~~~l~~ll~~~DvVIn~~P~~~~~~v~~a~l~~G~~~vD~s 108 (365)
T 2z2v_A 39 FDVYIGDVN--NENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp SEEEEEESC--HHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSCEEECCCHHHHHHHHHHHHHTTCCEEECC
T ss_pred CeEEEEECC--HHHHHHHHhhCCeEEEecCCHHHHHHHHhCCCEEEECCChhhhHHHHHHHHHhCCeEEEcc
Confidence 566666653 4555555544322222223347888999999999985321111234566788999988643
No 274
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1
Probab=28.55 E-value=1.6e+02 Score=23.90 Aligned_cols=82 Identities=4% Similarity=-0.115 Sum_probs=42.0
Q ss_pred HHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEE-Eecccc-----------hhHHHHHhcCCEEEeecCCCCcchH
Q 022615 108 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVF-TGMLLG-----------EELSQAYASGDVFVMPSESETLGLV 175 (294)
Q Consensus 108 ~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~-~g~~~~-----------~~~~~~~~~ad~~l~ps~~e~~~~~ 175 (294)
.+++++...|++.++-+.+... ..........++.. .+..+. ++..++...+|+++..+......-.
T Consensus 15 ~~~r~L~~~p~~elvav~d~~~-~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~~aTp~~~s~~~ 93 (340)
T 1b7g_O 15 RVADAIIKQPDMKLVGVAKTSP-NYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVVDTTPNGVGAQY 93 (340)
T ss_dssp HHHHHHHTCTTEEEEEEECSSC-SHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEEECCSTTHHHHH
T ss_pred HHHHHHHcCCCCEEEEEEcCCh-HHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEEECCCCchhHHH
Confidence 4777788888888776654321 11112222222222 121111 1233555689999876543222223
Q ss_pred HHHHHhcCCCEEeec
Q 022615 176 VLEAMSSGIPVVGVR 190 (294)
Q Consensus 176 ~~Ea~a~G~pvI~~~ 190 (294)
.-.++..|+++|...
T Consensus 94 a~~~~~aG~kvV~~s 108 (340)
T 1b7g_O 94 KPIYLQLQRNAIFQG 108 (340)
T ss_dssp HHHHHHTTCEEEECT
T ss_pred HHHHHHcCCeEEEeC
Confidence 345567899887643
No 275
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.38 E-value=49 Score=26.01 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred eecCCCCHHHHHHHHHHHhhChHHH
Q 022615 208 YLFNPGDLDDCLSKLEPLLYNQELR 232 (294)
Q Consensus 208 ~~~~~~d~~~l~~~i~~ll~~~~~~ 232 (294)
+-++|....+|+-+|+--++.+..+
T Consensus 218 ~~~dp~~dpela~alr~s~eee~~r 242 (268)
T 4b4t_W 218 FGVDPSMDPELAMALRLSMEEEQQR 242 (268)
T ss_dssp -------------------------
T ss_pred cCCCCCCCHHHHHHHHHhHHHHHHH
Confidence 3467777788999988776544333
No 276
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=28.32 E-value=62 Score=24.82 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=16.8
Q ss_pred CcchHHHHHHhcCCCEEeec
Q 022615 171 TLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~~ 190 (294)
.-..+.+.|++.|.|||..+
T Consensus 78 ~rt~K~~~ala~gipiV~~~ 97 (241)
T 2vxb_A 78 SRKVKYLEALAFNIPCVHPQ 97 (241)
T ss_dssp CCCHHHHHHHHHTCCEECTH
T ss_pred CCcHHHHHHHHcCCCEecHH
Confidence 44678999999999999763
No 277
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=28.20 E-value=1.7e+02 Score=21.26 Aligned_cols=105 Identities=18% Similarity=0.168 Sum_probs=58.9
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHHh---cCCCEEee-cC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RA 191 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~~-~~ 191 (294)
++.|+.+.+. ...+...+...+......-+.++....+. ..|++++-... +.-|..+++.+. .++|||.- ..
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~ 83 (225)
T 1kgs_A 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTAL 83 (225)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4556655432 23344444333433332223345444444 35887765432 334555665553 46787654 32
Q ss_pred CC---cccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 192 GG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 192 ~~---~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.. ..+.+ ..|..+++..|.+.+++..+|..++.
T Consensus 84 ~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 84 SDVEYRVKGL---NMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp CHHHHHHHTC---CCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---hCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 22 22333 56778999999999999999988764
No 278
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=28.10 E-value=72 Score=21.22 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=34.4
Q ss_pred EecccchhHHHHHhcCCEEEeecCC--CCcchHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCHHHHHHHH
Q 022615 145 TGMLLGEELSQAYASGDVFVMPSES--ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 222 (294)
Q Consensus 145 ~g~~~~~~~~~~~~~ad~~l~ps~~--e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i 222 (294)
+-++|.+.+.++++.++.++..-.. .+++.-+-. .+|.++ ..-+. +-.|. +-+++++.+.+
T Consensus 50 ~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~--~~~~~~-------~~~i~-----~~~G~---~~~~~ei~~~i 112 (118)
T 3ju3_A 50 FSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKL--YTGIDI-------KNKIL-----KYNGR---HMTEDEILKSA 112 (118)
T ss_dssp SCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHH--HHCCCC-------CCCCC-----CBTTB---CCCHHHHHHHH
T ss_pred EecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHH--HcCCCc-------eeEEe-----eeCCe---eCCHHHHHHHH
Confidence 3456667788888888766655332 233332322 233321 11111 22333 33788888888
Q ss_pred HHHh
Q 022615 223 EPLL 226 (294)
Q Consensus 223 ~~ll 226 (294)
.+++
T Consensus 113 ~~~~ 116 (118)
T 3ju3_A 113 KEIL 116 (118)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7765
No 279
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=28.04 E-value=36 Score=27.21 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=45.6
Q ss_pred ceEEEeecccccccHHHHHHHHHhCCCcEEE-EEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCC
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIA-FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 170 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~-i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e 170 (294)
..++.+|.-. -| ..+++++.+.++++++ +++..+. ..+. .++. +...+++.+. ..+|+++..+...
T Consensus 10 irv~IIG~G~--iG-~~~~~~l~~~~~~elvav~d~~~~--~~~~----~g~~---~~~~~~l~~~-~~~DvViiatp~~ 76 (304)
T 3bio_A 10 IRAAIVGYGN--IG-RYALQALREAPDFEIAGIVRRNPA--EVPF----ELQP---FRVVSDIEQL-ESVDVALVCSPSR 76 (304)
T ss_dssp EEEEEECCSH--HH-HHHHHHHHHCTTEEEEEEECC-------------CCTT---SCEESSGGGS-SSCCEEEECSCHH
T ss_pred CEEEEECChH--HH-HHHHHHHhcCCCCEEEEEEcCCHH--HHHH----cCCC---cCCHHHHHhC-CCCCEEEECCCch
Confidence 4566666311 11 2356777778888877 5554332 2221 2221 1122444444 6889988766433
Q ss_pred CcchHHHHHHhcCCCEEee
Q 022615 171 TLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~ 189 (294)
.-.-.+.+++..|++||+.
T Consensus 77 ~h~~~~~~al~aG~~Vi~e 95 (304)
T 3bio_A 77 EVERTALEILKKGICTADS 95 (304)
T ss_dssp HHHHHHHHHHTTTCEEEEC
T ss_pred hhHHHHHHHHHcCCeEEEC
Confidence 3334466889999999964
No 280
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=27.78 E-value=59 Score=24.58 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=37.1
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeecC
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 191 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 191 (294)
++++.+-|-.+.. ..+.++..+..+.... ..+..+|.+.. .-..+++.|+++|+|||..+.
T Consensus 8 ~~~v~fSG~~~~~--~~~~i~~lGg~v~~~~---------~~~THlV~~~~--~RT~K~l~Aia~g~~IVs~~W 68 (220)
T 3l41_A 8 RVYITFTGYDKKP--SIDNLKKLDMSITSNP---------SKCTHLIAPRI--LRTSKFLCSIPYGPCVVTMDW 68 (220)
T ss_dssp CEEEEECSCSSCC--CCGGGGGGTEEECSCT---------TTCSEEECSSC--CCBHHHHHHGGGCCEEECHHH
T ss_pred eEEEEEeccCCCC--CcchHhhcceeeccCc---------hhhhhhhhhhH--hhhcceeecCCCCCeEEEhHH
Confidence 4555555643321 2444555555543322 35777777642 236789999999999998653
No 281
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=27.48 E-value=1.2e+02 Score=19.26 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=57.5
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh--cCCCEEee-cC
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--SGIPVVGV-RA 191 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a--~G~pvI~~-~~ 191 (294)
.++.++.+.+. ...+.......+......-+..+....+.. .|++++-... +.-|..+++.+. .+.|+|.. ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGR 83 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECC
Confidence 35666665432 334444444444433322233455555443 5777764432 223444555443 46777653 33
Q ss_pred CCcccccccCCCCcceeecCCCCHHHHHHHHHHHh
Q 022615 192 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 226 (294)
Q Consensus 192 ~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll 226 (294)
..........+.|..+++..|.+.+++...+..++
T Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 84 DNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 32211111114467788999999999999987765
No 282
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=26.44 E-value=70 Score=26.32 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=29.7
Q ss_pred hhHHHHHhc--CCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 151 EELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 151 ~~~~~~~~~--ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
.++.+++.. .|+++..+....-...+.+|+.+|++|++-+
T Consensus 73 ~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 114 (383)
T 3oqb_A 73 TDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEK 114 (383)
T ss_dssp SCHHHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECS
T ss_pred CCHHHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEcC
Confidence 667777776 7888876655444556789999999999743
No 283
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=26.44 E-value=1.3e+02 Score=19.02 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=55.5
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEeecCC-CCcchHHHHHH--hcCCCEEeec-CC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAM--SSGIPVVGVR-AG 192 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~ps~~-e~~~~~~~Ea~--a~G~pvI~~~-~~ 192 (294)
++.++.+.+. ...+.......+......-+..+....+. ..|++++-... +.-|..+++.+ ....|+|... ..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 3455554432 23333333333333332223344444443 46887764432 23344555544 3567876543 22
Q ss_pred CcccccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 193 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 193 ~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
.........+.|..+++..|.+.+++...+..++.
T Consensus 83 ~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 83 SEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 21111111134677889999999999999987754
No 284
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=26.43 E-value=30 Score=26.45 Aligned_cols=39 Identities=21% Similarity=-0.026 Sum_probs=28.4
Q ss_pred hcCCEEEeecCCCCcchHHHHHHhcCCCEEeecCCCccc
Q 022615 158 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 196 (294)
Q Consensus 158 ~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e 196 (294)
..+|++|--+..+..-..+--+...|+|+|+...|...+
T Consensus 52 ~~~DVvIDFT~P~a~~~~~~~~~~~g~~~ViGTTG~~~~ 90 (228)
T 1vm6_A 52 DSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEE 90 (228)
T ss_dssp SCCSEEEECSCGGGHHHHHHHHHHHTCEEEECCCSCCHH
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeCCCCCHH
Confidence 378999977766666666677889999998865554443
No 285
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=25.94 E-value=25 Score=26.99 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=55.1
Q ss_pred EEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccH--HHHHhhhcCCCeEEEecccchhHHHHH------hcCCEEEe
Q 022615 94 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR--EELEKMFTGMPAVFTGMLLGEELSQAY------ASGDVFVM 165 (294)
Q Consensus 94 i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~v~~~g~~~~~~~~~~~------~~ad~~l~ 165 (294)
|+=.|+++...-++++++-...-+++.+.++|.|... +.. +++...+ -..|++++
T Consensus 8 iiKlGNigts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~-----------------~~~~~~~~~~~~~~~pDfvI~ 70 (283)
T 1qv9_A 8 FIKCGNLGTSMMMDMLLDERADREDVEFRVVGTSVKMDPECV-----------------EAAVEMALDIAEDFEPDFIVY 70 (283)
T ss_dssp EEECSCCHHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHH-----------------HHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEecccchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHH-----------------HHHHHHhhhhhhhcCCCEEEE
Confidence 4555666554445555444444468899999987521 111 2222222 25688777
Q ss_pred ecCCCC--cchHHHHHH-hcCCCEEe-ecCCCcc--cccccCCCCcceeecC
Q 022615 166 PSESET--LGLVVLEAM-SSGIPVVG-VRAGGIP--DIIPEDQDGKIGYLFN 211 (294)
Q Consensus 166 ps~~e~--~~~~~~Ea~-a~G~pvI~-~~~~~~~--e~~~~~~~~~~g~~~~ 211 (294)
.|-..+ .|.+.-|.+ +.|+|+|+ +|.++.. +.+ +..+-|+++-
T Consensus 71 isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~kd~l---~~~g~GYIiv 119 (283)
T 1qv9_A 71 GGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEM---EEQGLGYILV 119 (283)
T ss_dssp ECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGGHHHH---HHTTCEEEEE
T ss_pred ECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchhhHHHH---HhcCCcEEEE
Confidence 665443 456678887 57899765 5554332 333 4455666554
No 286
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=25.91 E-value=1.8e+02 Score=20.80 Aligned_cols=110 Identities=19% Similarity=0.264 Sum_probs=61.4
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecC-CCCcchHHHHHHh---cCCCEEee-c
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-R 190 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~-~e~~~~~~~Ea~a---~G~pvI~~-~ 190 (294)
.++.|+.+.+. ...+...+...++.....-+.++....+.. .|++++-.. .+.-|..+++.+. .++|||.- .
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~ 84 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITA 84 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 45666665432 334444444444443333333555555543 467766433 2334555666553 46787653 3
Q ss_pred CCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 191 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 191 ~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
.............|..+++..|.+.+++..+|..++..
T Consensus 85 ~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 85 HGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp CTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 32222211111457788999999999999999988754
No 287
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=25.75 E-value=2.5e+02 Score=22.19 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=39.0
Q ss_pred HHHHHHhC----CCcEEEEEcCCcc-HHHHHhhhcCC--C--eEEEecccchhHHHHHhcCCEEEeecC
Q 022615 109 LKRVMDRL----PEARIAFIGDGPY-REELEKMFTGM--P--AVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 109 l~~~~~~~----~~~~l~i~G~~~~-~~~~~~~~~~~--~--v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
+++++++. .+-+.+++|.+.. ...+..++... + |+.... ...++.+.++.||+++....
T Consensus 145 i~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~-~t~~L~~~~~~ADIVI~Avg 212 (281)
T 2c2x_A 145 IVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHT-GTRDLPALTRQADIVVAAVG 212 (281)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECT-TCSCHHHHHTTCSEEEECSC
T ss_pred HHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEEC-chhHHHHHHhhCCEEEECCC
Confidence 44555443 5679999998753 44444444444 3 555543 33789999999999998654
No 288
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=25.65 E-value=1e+02 Score=23.46 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=23.3
Q ss_pred hcCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 158 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 158 ~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
..|.-+|.+.. .-..+++.|+++|++||..+
T Consensus 44 ~~~THlV~~~~--~RT~K~l~aia~G~wIvs~~ 74 (235)
T 3al2_A 44 PTCTHIVVGHP--LRNEKYLASVAAGKWVLHRS 74 (235)
T ss_dssp TTCCEEEESSC--CCSHHHHHHHHTTCEEECTH
T ss_pred CCCcEEEECCC--CCCHHHHHHHHcCCcCccHH
Confidence 45666776652 23789999999999999864
No 289
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=25.62 E-value=97 Score=22.51 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=30.4
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeec
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKK 64 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~ 64 (294)
+....+..+|.||+......+.+...++....|+..+..
T Consensus 105 l~~~d~~~~DlIi~Md~~~~~~l~~~~p~~~~kv~~l~~ 143 (180)
T 4egs_A 105 LREEDLKGADLVLAMAFSHKRSLVSQYPEYADKIFTIKE 143 (180)
T ss_dssp CCSHHHHHCSEEEESSHHHHHHHHHHSTTSGGGEEETTT
T ss_pred cChhhCcCCCEEEEcCHHHHHHHHHhCcccccceeehhh
Confidence 344567889999999999999998887766677776643
No 290
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=25.37 E-value=1.9e+02 Score=20.80 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=23.6
Q ss_pred hcCC-EEEeecCCCCcchHHHHHH-hcCCCEEe
Q 022615 158 ASGD-VFVMPSESETLGLVVLEAM-SSGIPVVG 188 (294)
Q Consensus 158 ~~ad-~~l~ps~~e~~~~~~~Ea~-a~G~pvI~ 188 (294)
..+| +++.|.-+.-.+..+.+|+ +.++|+|=
T Consensus 93 ~~~dgIIINPgAyTHtSvAlrDAL~~v~~P~VE 125 (172)
T 3n8k_A 93 DAAEPVILNAGGLTHTSVALRDACAELSAPLIE 125 (172)
T ss_dssp HHTCCEEEECGGGGGTCHHHHHHHTTCCSCEEE
T ss_pred hcCcEEEECcchhhhhhHHHHHHHHhCCCCEEE
Confidence 3445 6777887777889999998 56799874
No 291
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=25.11 E-value=1.1e+02 Score=22.51 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=31.6
Q ss_pred HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 130 REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 130 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+..+.+++...+..+...++ ..+.-+|.......-..+++.|++.|++||..+
T Consensus 15 ~~~l~~~~~~~G~~~~~~~~--------~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~ 67 (210)
T 2nte_A 15 QKMLSELAVILKAKKYTEFD--------STVTHVVVPGDAVQSTLKCMLGILNGCWILKFE 67 (210)
T ss_dssp HHHHHHHHHHTTCEEESSCC--------TTCCEEEESSSSCCCSHHHHHHHHTTCEEEETH
T ss_pred HHHHHHHHHHcCCEEeCCCC--------CCCeEEEEcCCCcchHHHHHHHHhcCCEEecHH
Confidence 34556666665555544332 245555554422234578889999999998754
No 292
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=25.01 E-value=1.4e+02 Score=24.14 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=42.5
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEec--cc------------chhHHHHHhcCCEEEe--ecCCC---CcchHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGM--LL------------GEELSQAYASGDVFVM--PSESE---TLGLVVLE 178 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~--~~------------~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~E 178 (294)
+-++-|+|-|.....+.+.+...+....++ -+ ..++.++++.||++++ |...+ -++...+.
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~ 224 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLA 224 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHh
Confidence 357888898877777777766555333332 21 1246788999998886 32222 23344555
Q ss_pred HHhcCCCEEee
Q 022615 179 AMSSGIPVVGV 189 (294)
Q Consensus 179 a~a~G~pvI~~ 189 (294)
.|--|.-+|-.
T Consensus 225 ~mk~gailIN~ 235 (330)
T 4e5n_A 225 LVRPGALLVNP 235 (330)
T ss_dssp TSCTTEEEEEC
T ss_pred hCCCCcEEEEC
Confidence 55555555543
No 293
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=24.59 E-value=1.3e+02 Score=24.57 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=41.7
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEeccc--------------chhHHHHHhcCCEEEe--ecCCC---CcchHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGMLL--------------GEELSQAYASGDVFVM--PSESE---TLGLVVLE 178 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~--------------~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~E 178 (294)
+-++-|+|-|.....+.+.++..+....++-+ .+++.++++.||++++ |...+ -+....+.
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~ 239 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLT 239 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHh
Confidence 35778888776666555555544433322211 1368899999999886 33322 23445566
Q ss_pred HHhcCCCEEee
Q 022615 179 AMSSGIPVVGV 189 (294)
Q Consensus 179 a~a~G~pvI~~ 189 (294)
.|--|.-+|-+
T Consensus 240 ~mk~gailIN~ 250 (352)
T 3gg9_A 240 RMKPTALFVNT 250 (352)
T ss_dssp TSCTTCEEEEC
T ss_pred hCCCCcEEEEC
Confidence 66666666544
No 294
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=24.55 E-value=3.1e+02 Score=22.85 Aligned_cols=40 Identities=18% Similarity=0.025 Sum_probs=25.1
Q ss_pred hhHHHHHhc-CCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 151 EELSQAYAS-GDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 151 ~~~~~~~~~-ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
+.+.++... +|+++........-...++|+.+|+.|++.+
T Consensus 84 ~~~~el~~~~iDvVV~ai~G~aGl~ptlaAi~aGK~VvlAN 124 (388)
T 1r0k_A 84 DALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALAN 124 (388)
T ss_dssp HHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEECC
T ss_pred cHHHHHHcCCCCEEEEeCCCHHHHHHHHHHHHCCCEEEEeC
Confidence 344444432 6888876533222234688999999999864
No 295
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=24.41 E-value=2.2e+02 Score=22.36 Aligned_cols=62 Identities=10% Similarity=0.147 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHhCCCcEEEEEcCCc-cHHHHHhhhcCC--CeEEEecccchhHHHHHhcCCEEEeec
Q 022615 104 KSLDFLKRVMDRLPEARIAFIGDGP-YREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 104 k~~~~l~~~~~~~~~~~l~i~G~~~-~~~~~~~~~~~~--~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
.++..+++-.. +.+-+.+++|.+. -...+..++... .|+.... ...++.+..+.||+++...
T Consensus 137 ~gv~~lL~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~-~t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 137 RAVIDIMDYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHS-KTKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp HHHHHHHHHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT-TCSCHHHHHHHSSEEEECS
T ss_pred HHHHHHHHHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeC-CcccHHHhhccCCEEEECC
Confidence 45555666555 7788999999764 344444444333 3555543 2378999999999999865
No 296
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=24.34 E-value=3e+02 Score=22.61 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHhCCeEEecc--hhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhh-c--C-CCCCceEE
Q 022615 22 PMWLVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLS-N--G-EPDKPLIV 95 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~s--~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~-~--~-~~~~~~i~ 95 (294)
.+.-.-+.+-+.+|.|++=. +...+.+.+.- .+-|| |+-+ +...|...-.+...-.. . + .-+...|.
T Consensus 85 sl~DTarvLs~y~D~IviR~~~~~~~~~lA~~~-----~vPVI-Nag~-~~~HPtQaLaDl~TI~E~~~~G~~l~glkva 157 (355)
T 4a8p_A 85 TIEDTSRVLSRLVDILMARVERHHSIVDLANCA-----TIPVI-NGMS-DYNHPTQELGDLCTMVEHLPEGKKLEDCKVV 157 (355)
T ss_dssp CHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHC-----SSCEE-ECCC-SSCCHHHHHHHHHHHHHTCCTTCCGGGCEEE
T ss_pred CHHHHHHHHHHhCCEEEEecCcHHHHHHHHHhC-----CCCEE-eCCC-CCCCcHHHHHHHHHHHHHhhcCCCCCCCEEE
Confidence 35566777778899888744 34455555543 33344 4445 44555322222111111 1 1 12456899
Q ss_pred EeecccccccHHHHHHHHHhCCCcEEEEEcCCccH--HHH----HhhhcCCC--eEEEecccchhHHHHHhcCCEEEe
Q 022615 96 HVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR--EEL----EKMFTGMP--AVFTGMLLGEELSQAYASGDVFVM 165 (294)
Q Consensus 96 ~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~--~~~----~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~l~ 165 (294)
|+|.. ..-...++.++..+ ++++.+++...+. +.+ ++..+..+ +.+. .++. .+..||++..
T Consensus 158 ~vGD~--~rva~Sl~~~~~~~-G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~-----~d~~-av~~aDVVyt 226 (355)
T 4a8p_A 158 FVGDA--TQVCFSLGLITTKM-GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVT-----DDAS-SVEGADFLYT 226 (355)
T ss_dssp EESCC--CHHHHHHHHHHHHT-TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEE-----CCGG-GGTTCSEEEE
T ss_pred EECCC--chhHHHHHHHHHHc-CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEE-----CCHH-HHcCCCEEEe
Confidence 99987 44466778888887 6899999853221 222 22222222 3322 3455 7899999886
No 297
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=24.24 E-value=1.8e+02 Score=23.73 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=45.8
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEe--ccc---------chhHHHHHhcCCEEEe--ecCCC---CcchHHHHHHh
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTG--MLL---------GEELSQAYASGDVFVM--PSESE---TLGLVVLEAMS 181 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g--~~~---------~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea~a 181 (294)
+-++-|+|-|.-...+.+.++..+....+ .-+ ..++.++++.||++++ |...+ -++...+..|-
T Consensus 148 gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk 227 (343)
T 2yq5_A 148 NLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMK 227 (343)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSC
T ss_pred CCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCC
Confidence 35788999887766666665544433332 221 1258899999999886 43222 34556777777
Q ss_pred cCCCEEeec
Q 022615 182 SGIPVVGVR 190 (294)
Q Consensus 182 ~G~pvI~~~ 190 (294)
-|.-+|-+.
T Consensus 228 ~gailIN~a 236 (343)
T 2yq5_A 228 KSAYLINCA 236 (343)
T ss_dssp TTCEEEECS
T ss_pred CCcEEEECC
Confidence 777777543
No 298
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=24.05 E-value=1.4e+02 Score=18.87 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=44.6
Q ss_pred eEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeE--EEecccchhHHHHHhcCCEEEeecCCC
Q 022615 93 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAV--FTGMLLGEELSQAYASGDVFVMPSESE 170 (294)
Q Consensus 93 ~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~--~~g~~~~~~~~~~~~~ad~~l~ps~~e 170 (294)
.++.+|. +. =|. .+.+.+......++.+++..+ +..+... ..++. .....+.+++.+.+..+|+++......
T Consensus 7 ~v~I~G~-G~-iG~-~~~~~l~~~g~~~v~~~~r~~--~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~ 80 (118)
T 3ic5_A 7 NICVVGA-GK-IGQ-MIAALLKTSSNYSVTVADHDL--AALAVLN-RMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF 80 (118)
T ss_dssp EEEEECC-SH-HHH-HHHHHHHHCSSEEEEEEESCH--HHHHHHH-TTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG
T ss_pred eEEEECC-CH-HHH-HHHHHHHhCCCceEEEEeCCH--HHHHHHH-hCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch
Confidence 3555564 22 232 344444444336777776543 3333332 23322 222333467888899999998765322
Q ss_pred CcchHHHHHHhcCCCEE
Q 022615 171 TLGLVVLEAMSSGIPVV 187 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI 187 (294)
.....+-.+...|++.+
T Consensus 81 ~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 81 LTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred hhHHHHHHHHHhCCCEE
Confidence 22222334445666655
No 299
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=23.91 E-value=2.6e+02 Score=23.31 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=21.5
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHh
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMS 181 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a 181 (294)
.++.+.+..+|+++-.|...-+.--+++.|+
T Consensus 255 ~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma 285 (388)
T 1vl6_A 255 GDLETALEGADFFIGVSRGNILKPEWIKKMS 285 (388)
T ss_dssp SCHHHHHTTCSEEEECSCSSCSCHHHHTTSC
T ss_pred hhHHHHHccCCEEEEeCCCCccCHHHHHhcC
Confidence 4589999999999987653334444555554
No 300
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=23.73 E-value=1.4e+02 Score=21.02 Aligned_cols=40 Identities=18% Similarity=-0.007 Sum_probs=29.3
Q ss_pred HHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEeecc
Q 022615 26 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 65 (294)
Q Consensus 26 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g 65 (294)
+....+..+|.||+......+.+.+.++....++..+..+
T Consensus 76 l~~~~~~~~DlIi~M~~~~~~~l~~~~p~~~~kv~~l~~~ 115 (161)
T 2cwd_A 76 LTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLVLEE 115 (161)
T ss_dssp CCHHHHHHCSEEEESSHHHHHHHHHHCGGGTTTEEEGGGG
T ss_pred CCHhHhccCCEEEECChHHHHHHHHHCCCccCcEEeehhh
Confidence 3445667999999999988888877765445677666443
No 301
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=23.69 E-value=2.4e+02 Score=21.41 Aligned_cols=108 Identities=9% Similarity=0.122 Sum_probs=64.1
Q ss_pred CCcEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc---CCEEEeecC-CCCcchHHHHHHh-----cCCCE
Q 022615 117 PEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMS-----SGIPV 186 (294)
Q Consensus 117 ~~~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~---ad~~l~ps~-~e~~~~~~~Ea~a-----~G~pv 186 (294)
...++.++-+.+. ...+..............-+.++..+.+.. .|++++-.. .+.-|..+++.+. ..+||
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~i 202 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAI 202 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeE
Confidence 4578888876543 234444444444444333344666666653 367776433 2334556666553 24677
Q ss_pred Ee-ecCCCcc---cccccCCCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 187 VG-VRAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 187 I~-~~~~~~~---e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
|+ |...... +.+ +.|-.+++..|.+.+++...+..++.
T Consensus 203 i~~s~~~~~~~~~~a~---~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 203 IGISVSDKRGLSARYL---KQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp EEEECSSSSSHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEccCCHHHHHHHH---hcChhheEcCCCCHHHHHHHHHHHHH
Confidence 64 3322221 223 56788999999999999999988864
No 302
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=23.51 E-value=71 Score=24.04 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=47.9
Q ss_pred ecccccccHHHHHHHHHhC----CCcEEEEEcCCccHHHHHhhh--cCCCeEEEeccc-------------------chh
Q 022615 98 GRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMF--TGMPAVFTGMLL-------------------GEE 152 (294)
Q Consensus 98 G~~~~~k~~~~l~~~~~~~----~~~~l~i~G~~~~~~~~~~~~--~~~~v~~~g~~~-------------------~~~ 152 (294)
|+-+...+++.|++.+++. ...++.|+|.|.....+.... ...+....|+++ .++
T Consensus 60 G~~g~GY~V~~L~~~i~~~Lg~~~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~d 139 (212)
T 3keo_A 60 GRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGIST 139 (212)
T ss_dssp TTTSSSEEHHHHHHHHHHHTTTTSCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGG
T ss_pred CCCCCCEEHHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHH
Confidence 3334455677777777654 346788888876555554442 122333333332 146
Q ss_pred HHHHHhc--CCEEEeecCCCCcchHHHH-HHhcCCCEEee
Q 022615 153 LSQAYAS--GDVFVMPSESETLGLVVLE-AMSSGIPVVGV 189 (294)
Q Consensus 153 ~~~~~~~--ad~~l~ps~~e~~~~~~~E-a~a~G~pvI~~ 189 (294)
+.++++. .|.++...-... ...+.| ...+|+.-|-+
T Consensus 140 L~~~v~~~~Id~vIIAvPs~~-aq~v~d~lv~~GIk~I~n 178 (212)
T 3keo_A 140 INDHLIDSDIETAILTVPSTE-AQEVADILVKAGIKGILS 178 (212)
T ss_dssp HHHHC-CCSCCEEEECSCGGG-HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHcCCCEEEEecCchh-HHHHHHHHHHcCCCEEEE
Confidence 6666664 566665332111 223333 45588887765
No 303
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=23.30 E-value=2.7e+02 Score=21.77 Aligned_cols=90 Identities=13% Similarity=0.060 Sum_probs=50.9
Q ss_pred hhHHHHHhcCCEEEeec-CCCCcchHHHHHHhcCCCEEeecCCCcccccccCCC----CcceeecCCCCHHHHHHHHHHH
Q 022615 151 EELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD----GKIGYLFNPGDLDDCLSKLEPL 225 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps-~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~----~~~g~~~~~~d~~~l~~~i~~l 225 (294)
..-..-++.||+++.-. ..|++-.++++.. | +-++..-...+......+ ...-++.++.+...+++.|...
T Consensus 47 p~d~~~l~~Adlvv~nG~~lE~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~dPHvWldp~~~~~~a~~I~~~ 122 (282)
T 3mfq_A 47 SSDLSKLQKADLVLYHGLHFEGKMVEALEKT--G--VAVSKNFNAKDLNTMDEDGEEIVDPHFWFSIPLYKSAVAVASEE 122 (282)
T ss_dssp HHHHHHHHHCSEEEECCTTSSSSCHHHHHHH--C--EETTTTCCGGGCCEECSSSSCEECCCGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEcCcchHHHHHHHHHhc--C--cchhhccCcccccccccCCCCCCCCCccCCHHHHHHHHHHHHHH
Confidence 34456778899988765 3677777777763 2 111111100011100000 1223456666777788888877
Q ss_pred hh--ChHHHHHHHHHHHHHHH
Q 022615 226 LY--NQELRETMGQAARQEME 244 (294)
Q Consensus 226 l~--~~~~~~~~~~~~~~~~~ 244 (294)
|. ||+......+|+..+.+
T Consensus 123 L~~~dP~~a~~y~~N~~~~~~ 143 (282)
T 3mfq_A 123 LQKLLPAKAEMIQKNTEKYQA 143 (282)
T ss_dssp HTTTCGGGHHHHHHHHHHHHH
T ss_pred HHHhChhhHHHHHHHHHHHHH
Confidence 74 78877777777776654
No 304
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=23.23 E-value=2.9e+02 Score=22.05 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHhCCeEEec--chhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHH-hhcCCCCCceEEEee
Q 022615 22 PMWLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR-LSNGEPDKPLIVHVG 98 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~G 98 (294)
.+.-..+.+-+.+|.|+.= ++...+.+.+.- .+-||. |-+ +..+|...-.+...- ...+.-+...|.|+|
T Consensus 89 sl~DTarvls~~~D~iviR~~~~~~~~~la~~~-----~vPVIN-a~~-~~~HPtQaLaDl~Ti~e~~g~l~gl~ia~vG 161 (301)
T 2ef0_A 89 PVRDVAKNLERFVEGIAARVFRHETVEALARHA-----KVPVVN-ALS-DRAHPLQALADLLTLKEVFGGLAGLEVAWVG 161 (301)
T ss_dssp CHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHC-----SSCEEE-EEC-SSCCHHHHHHHHHHHHHHHSCCTTCEEEEES
T ss_pred chHHHHHHHHHhCCEEEEecCChHHHHHHHHHC-----CCCEEe-CCC-CccCchHHHHHHHHHHHHhCCcCCcEEEEEC
Confidence 4556677777889988874 455555555543 344554 545 555554322211111 111223567899999
Q ss_pred cccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecC
Q 022615 99 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 168 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~ 168 (294)
.. ..-..-++.++..+ ++++.++|...+ .+.+.+.+. +.+ .+++.+.+..||++....+
T Consensus 162 D~--~rva~Sl~~~~~~~-g~~v~~~~P~~~~~~~~~~~~~~---~~~-----~~d~~eav~~aDvvy~~~~ 222 (301)
T 2ef0_A 162 DG--NNVLNSLLEVAPLA-GLKVRVATPKGYEPDPGLLKRAN---AFF-----THDPKEAALGAHALYTDVW 222 (301)
T ss_dssp CC--CHHHHHHHHHHHHH-TCEEEEECCTTCCCCHHHHHHHT---CEE-----ESCHHHHHTTCSEEEECCC
T ss_pred CC--chhHHHHHHHHHHc-CCEEEEECCchhcCCHHHHhhce---eEE-----ECCHHHHhcCCCEEEecCc
Confidence 86 34466778888877 789999986432 122222221 221 2678899999999887654
No 305
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=23.21 E-value=3e+02 Score=22.21 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHhCCeEEe--cchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHH-hhcCCCCCceEEEee
Q 022615 22 PMWLVIKFLHRAADLTLV--PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR-LSNGEPDKPLIVHVG 98 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~--~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~G 98 (294)
.+.-..+.+-+.+|.|+. .++...+.+.++- .+-||. |-+ +..+|...-.+...- ...+.-+...|.|+|
T Consensus 90 sl~DTarvls~~~D~iviR~~~~~~~~~lA~~~-----~vPVIN-a~~-~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vG 162 (321)
T 1oth_A 90 SLTDTARVLSSMADAVLARVYKQSDLDTLAKEA-----SIPIIN-GLS-DLYHPIQILADYLTLQEHYSSLKGLTLSWIG 162 (321)
T ss_dssp CHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHC-----SSCEEE-SCC-SSCCHHHHHHHHHHHHHHHSCCTTCEEEEES
T ss_pred CHHHHHHHHHHhCCEEEEeCCChhHHHHHHHhC-----CCCEEc-CCC-CCCCcHHHHHHHHHHHHHhCCcCCcEEEEEC
Confidence 455667777888999888 5566666666543 344554 544 555554322211111 111223567899999
Q ss_pred cccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhh----hcCC--CeEEEecccchhHHHHHhcCCEEEeec
Q 022615 99 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKM----FTGM--PAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 99 ~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~----~~~~--~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
... .-..-++.++..+ ++++.++|...+ .+.+.+. ++.. .+.+. +++.+.+..||++..-.
T Consensus 163 D~~--~va~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~-----~d~~eav~~aDvvy~d~ 231 (321)
T 1oth_A 163 DGN--NILHSIMMSAAKF-GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLT-----NDPLEAAHGGNVLITDT 231 (321)
T ss_dssp CSS--HHHHHHHTTTGGG-TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEE-----SCHHHHHTTCSEEEECC
T ss_pred Cch--hhHHHHHHHHHHc-CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE-----ECHHHHhccCCEEEEec
Confidence 863 2345566666666 789999986432 1222222 2222 23322 67788999999988744
No 306
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=23.13 E-value=2.8e+02 Score=21.82 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=24.5
Q ss_pred eecCCCCHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Q 022615 208 YLFNPGDLDDCLSKLEPLLY--NQELRETMGQAARQEME 244 (294)
Q Consensus 208 ~~~~~~d~~~l~~~i~~ll~--~~~~~~~~~~~~~~~~~ 244 (294)
++.++.+...+++.|...|. ||+......+|+..+..
T Consensus 134 ~Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~ 172 (291)
T 1pq4_A 134 IWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLA 172 (291)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 45555566677777777664 77777777777766554
No 307
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=23.12 E-value=1.1e+02 Score=24.72 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=32.4
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEec--c-----------cchhHHHHHhcCCEEEe
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGM--L-----------LGEELSQAYASGDVFVM 165 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~--~-----------~~~~~~~~~~~ad~~l~ 165 (294)
+-++-|+|-|.....+.+.+...+..+.++ - ...++.++++.||++++
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l 200 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVS 200 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEE
T ss_pred cceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEE
Confidence 468999998877666666655444332222 1 12578899999999886
No 308
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=23.05 E-value=2.1e+02 Score=23.13 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=45.4
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCC--eEEEeccc---------chhHHHHHhcCCEEEee--cCCC---CcchHHHHHHh
Q 022615 118 EARIAFIGDGPYREELEKMFTGMP--AVFTGMLL---------GEELSQAYASGDVFVMP--SESE---TLGLVVLEAMS 181 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~~---------~~~~~~~~~~ad~~l~p--s~~e---~~~~~~~Ea~a 181 (294)
+-++-|+|-|.....+.+.+...+ |.....-+ ..++.++++.||++++- ...+ -++...++.|.
T Consensus 145 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk 224 (333)
T 1dxy_A 145 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMK 224 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCC
Confidence 457888998876666666555443 33322211 12578899999998863 3222 24456778887
Q ss_pred cCCCEEeecCC
Q 022615 182 SGIPVVGVRAG 192 (294)
Q Consensus 182 ~G~pvI~~~~~ 192 (294)
-|.-+|-+..+
T Consensus 225 ~ga~lIn~srg 235 (333)
T 1dxy_A 225 PGAIVINTARP 235 (333)
T ss_dssp TTEEEEECSCT
T ss_pred CCcEEEECCCC
Confidence 77666654333
No 309
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}
Probab=23.04 E-value=46 Score=27.22 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=20.7
Q ss_pred HHhcCCEEEeecCCCCcchHHH--HHHhcCCCEEeec
Q 022615 156 AYASGDVFVMPSESETLGLVVL--EAMSSGIPVVGVR 190 (294)
Q Consensus 156 ~~~~ad~~l~ps~~e~~~~~~~--Ea~a~G~pvI~~~ 190 (294)
++..+|+++..+.. +.+.... .++..|+.||.+.
T Consensus 78 ~~~~vDiV~eatg~-~~s~~~a~~~~l~aG~~VI~sa 113 (343)
T 2yyy_A 78 IIEDADIVVDGAPK-KIGKQNLENIYKPHKVKAILQG 113 (343)
T ss_dssp TGGGCSEEEECCCT-THHHHHHHHTTTTTTCEEEECT
T ss_pred hccCCCEEEECCCc-cccHHHHHHHHHHCCCEEEECC
Confidence 34688998876422 1112333 4678899988653
No 310
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=23.04 E-value=1.4e+02 Score=19.10 Aligned_cols=75 Identities=7% Similarity=0.116 Sum_probs=42.2
Q ss_pred cccHHHHHHHHHhCCCcEEEEEc-CCc--cHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHH
Q 022615 103 EKSLDFLKRVMDRLPEARIAFIG-DGP--YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLE 178 (294)
Q Consensus 103 ~k~~~~l~~~~~~~~~~~l~i~G-~~~--~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~E 178 (294)
..|.....+++++- .++++|+. +.+ ....+..++...+|-+....+.+++...+......+..-..+|+.-.+.+
T Consensus 21 v~G~~~v~kai~~g-ka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~~~~~ai~D~g~a~~i~~ 98 (101)
T 3v7q_A 21 VSGEDLVIKEIRNA-RAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAVLGRSIGKEARVVVAVTDQGFANKLIS 98 (101)
T ss_dssp EESHHHHHHHHHTT-CCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTSSCCSEEEECCHHHHHHHHH
T ss_pred ccchhhhHHHHhcC-ceeEEEEeccccccchhhhcccccccCCCeeeechHHHHHhhhCccceEEEEEeccHHHHHHHH
Confidence 35677788888764 46666554 433 23445555555565555556778888888775322222233455444443
No 311
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Probab=22.96 E-value=2.3e+02 Score=22.89 Aligned_cols=42 Identities=24% Similarity=0.181 Sum_probs=27.5
Q ss_pred hhHHHHHhc--CCEEEeecCCCC----cchHHHHHHhcCCCEEeecCC
Q 022615 151 EELSQAYAS--GDVFVMPSESET----LGLVVLEAMSSGIPVVGVRAG 192 (294)
Q Consensus 151 ~~~~~~~~~--ad~~l~ps~~e~----~~~~~~Ea~a~G~pvI~~~~~ 192 (294)
.++.+++.. .|+++..+..+. .-..+.+++..|+.||+.+..
T Consensus 70 ~d~~~ll~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKk 117 (327)
T 3do5_A 70 AKAIEVVRSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKG 117 (327)
T ss_dssp CCHHHHHHHSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSH
T ss_pred CCHHHHhcCCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCch
Confidence 366777765 688776543221 123468999999999998543
No 312
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Probab=22.78 E-value=1.3e+02 Score=24.08 Aligned_cols=91 Identities=9% Similarity=-0.039 Sum_probs=47.2
Q ss_pred ceEEEeecccccccHHHHHHHH-HhCCCcEEEEEcCC-ccHHHHHhhhcCCCeEEEecccchhHHHHHh-----cCCEEE
Q 022615 92 PLIVHVGRLGVEKSLDFLKRVM-DRLPEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYA-----SGDVFV 164 (294)
Q Consensus 92 ~~i~~~G~~~~~k~~~~l~~~~-~~~~~~~l~i~G~~-~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~-----~ad~~l 164 (294)
..+..+|. + .-|.. +++.+ +..++++++.+.+. +.. ..++..+..++.. ..+++.+++. ..|+++
T Consensus 5 irVaIIG~-G-~iG~~-~~~~l~~~~~~~elvav~d~~~~~-~~~~~a~~~g~~~----~~~~~e~ll~~~~~~~iDvV~ 76 (312)
T 1nvm_B 5 LKVAIIGS-G-NIGTD-LMIKVLRNAKYLEMGAMVGIDAAS-DGLARAQRMGVTT----TYAGVEGLIKLPEFADIDFVF 76 (312)
T ss_dssp EEEEEECC-S-HHHHH-HHHHHHHHCSSEEEEEEECSCTTC-HHHHHHHHTTCCE----ESSHHHHHHHSGGGGGEEEEE
T ss_pred CEEEEEcC-c-HHHHH-HHHHHHhhCcCeEEEEEEeCChhh-hHHHHHHHcCCCc----ccCCHHHHHhccCCCCCcEEE
Confidence 34666662 1 22333 44555 43788887665543 222 1122222223221 1245555554 468888
Q ss_pred eecCCCCcchHHHHHHhc--CCCEEeec
Q 022615 165 MPSESETLGLVVLEAMSS--GIPVVGVR 190 (294)
Q Consensus 165 ~ps~~e~~~~~~~Ea~a~--G~pvI~~~ 190 (294)
..+..+.-..-..+++.. |+.||+-.
T Consensus 77 ~atp~~~h~~~a~~al~a~~Gk~Vi~ek 104 (312)
T 1nvm_B 77 DATSASAHVQNEALLRQAKPGIRLIDLT 104 (312)
T ss_dssp ECSCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred ECCChHHHHHHHHHHHHhCCCCEEEEcC
Confidence 765433333446788888 99999854
No 313
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=22.78 E-value=1.9e+02 Score=20.43 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=23.1
Q ss_pred hcCC-EEEeecCCCCcchHHHHHH-hcCCCEEe
Q 022615 158 ASGD-VFVMPSESETLGLVVLEAM-SSGIPVVG 188 (294)
Q Consensus 158 ~~ad-~~l~ps~~e~~~~~~~Ea~-a~G~pvI~ 188 (294)
..+| +++.|.-+...+..+.+|+ +.++|+|=
T Consensus 72 ~~~dgiiINpgA~THtSvAlrDAl~~~~~P~VE 104 (153)
T 3lwz_A 72 GNTDFILINPAAFTHTSVALRDALLGVQIPFIE 104 (153)
T ss_dssp TTCSEEEEECGGGGGTCHHHHHHHHHHTCCEEE
T ss_pred hcCceEEEccccceechHHHHHHHHhcCCCEEE
Confidence 3445 5667877777888999987 56899984
No 314
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=22.68 E-value=1.8e+02 Score=24.21 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCCCeEEEecc----------cchhHHHHHhcCCEEEe--ecCCC-------CcchHHH
Q 022615 117 PEARIAFIGDGPYREELEKMFTGMPAVFTGML----------LGEELSQAYASGDVFVM--PSESE-------TLGLVVL 177 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~----------~~~~~~~~~~~ad~~l~--ps~~e-------~~~~~~~ 177 (294)
.+-++-|+|-|.-...+.+.+...+....++= ...++.++++.||++++ |...+ -++...+
T Consensus 118 ~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l 197 (381)
T 3oet_A 118 RDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLI 197 (381)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHH
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHH
Confidence 35789999988777766666665543333321 23468899999999886 43333 2345567
Q ss_pred HHHhcCCCEEeec
Q 022615 178 EAMSSGIPVVGVR 190 (294)
Q Consensus 178 Ea~a~G~pvI~~~ 190 (294)
+.|--|.-+|-+.
T Consensus 198 ~~mk~gailIN~a 210 (381)
T 3oet_A 198 RRLKPGAILINAC 210 (381)
T ss_dssp HHSCTTEEEEECS
T ss_pred hcCCCCcEEEECC
Confidence 7777776666543
No 315
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=22.63 E-value=95 Score=22.69 Aligned_cols=39 Identities=18% Similarity=0.073 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCeEEecchhhHHHHHHhccCCcCceEEee
Q 022615 25 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWK 63 (294)
Q Consensus 25 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~~i~ 63 (294)
.+....+..+|.||+.....++.+...++....++..+.
T Consensus 102 ~lt~~d~~~~DlIltMd~~~~~~l~~~~P~~~~Kv~lL~ 140 (184)
T 4etn_A 102 PLTEELMESADLVLAMTHQHKQIIASQFGRYRDKVFTLK 140 (184)
T ss_dssp BCCHHHHHHCSEEEESSHHHHHHHHHHCGGGGGGEEEHH
T ss_pred cCCHHHcCCCCEEEEcCcHHHHHHHHHCCCccceEEEhh
Confidence 344556788999999999999988888765556776653
No 316
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.60 E-value=42 Score=20.54 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=27.1
Q ss_pred hcCCCEEeecCCCcccccccC-----CCCcceeecCCCCHHHHHHHHHHHhh
Q 022615 181 SSGIPVVGVRAGGIPDIIPED-----QDGKIGYLFNPGDLDDCLSKLEPLLY 227 (294)
Q Consensus 181 a~G~pvI~~~~~~~~e~~~~~-----~~~~~g~~~~~~d~~~l~~~i~~ll~ 227 (294)
-.|+|.++.-.|+...-+++. +.|..--+....|++++.+.+++++.
T Consensus 49 dngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflk 100 (112)
T 2lnd_A 49 DNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLK 100 (112)
T ss_dssp TCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHH
T ss_pred hcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHH
Confidence 468888877655443322110 12222234455689999988888764
No 317
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=22.59 E-value=3.1e+02 Score=22.28 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHhCCeEEecc--hhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhh-c--C-CCCCceEE
Q 022615 22 PMWLVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLS-N--G-EPDKPLIV 95 (294)
Q Consensus 22 ~~~~~~~~~~~~ad~ii~~s--~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~-~--~-~~~~~~i~ 95 (294)
.+.-..+.+-+.+|.|++=. +...+.+.+.- .+-|| |+-+ +...|...-.+...-.. . + .-+...|.
T Consensus 107 sl~DTarvLs~~~D~IviR~~~~~~~~~lA~~~-----~vPVI-Nag~-~~~HPtQaLaDl~Ti~e~~~~G~~l~glkva 179 (339)
T 4a8t_A 107 TIEDTSRVLSRLVDILMARVERHHSIVDLANCA-----TIPVI-NGMS-DYNHPTQELGDLCTMVEHLPEGKKLEDCKVV 179 (339)
T ss_dssp CHHHHHHHHHHHCSEEEEECSSHHHHHHHHHHC-----SSCEE-ECCC-SSCCHHHHHHHHHHHHHTCCTTCCGGGCEEE
T ss_pred CHHHHHHHHHHhCCEEEEecCcHHHHHHHHHhC-----CCCEE-ECCC-CCcCcHHHHHHHHHHHHHhhcCCCCCCCEEE
Confidence 35566777778899988744 34555555543 33344 4445 44555322222111111 1 1 12456899
Q ss_pred EeecccccccHHHHHHHHHhCCCcEEEEEcCCccH--HHH----HhhhcCCC--eEEEecccchhHHHHHhcCCEEEee
Q 022615 96 HVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR--EEL----EKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMP 166 (294)
Q Consensus 96 ~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~--~~~----~~~~~~~~--v~~~g~~~~~~~~~~~~~ad~~l~p 166 (294)
|+|.. ..-...++.++..+ ++++.+++...+. +.+ ++.++..+ +.+. +++. .+..||++..-
T Consensus 180 ~vGD~--~rva~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~-----~d~~-av~~aDvvytd 249 (339)
T 4a8t_A 180 FVGDA--TQVCFSLGLITTKM-GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVT-----DDAS-SVEGADFLYTD 249 (339)
T ss_dssp EESSC--CHHHHHHHHHHHHT-TCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEE-----CCGG-GGTTCSEEEEC
T ss_pred EECCC--chhHHHHHHHHHHc-CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEE-----CChh-HHcCCCEEEec
Confidence 99987 44466778888888 6899999853221 222 22222222 3322 3455 78999998863
No 318
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=22.53 E-value=2.5e+02 Score=23.05 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=43.6
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEec--cc-----------chhHHHHHhcCCEEEe--ecCCC---CcchHHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGM--LL-----------GEELSQAYASGDVFVM--PSESE---TLGLVVLEA 179 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~--~~-----------~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea 179 (294)
+-++-|+|-|.-...+.+.++..+..+.++ .. ..++.++++.||++++ |...+ -++...++.
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~ 255 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSS 255 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHT
T ss_pred CCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhc
Confidence 357889998887777777776655333332 11 1357889999999886 33222 234445555
Q ss_pred HhcCCCEEee
Q 022615 180 MSSGIPVVGV 189 (294)
Q Consensus 180 ~a~G~pvI~~ 189 (294)
|--|.-+|-+
T Consensus 256 mk~gailIN~ 265 (365)
T 4hy3_A 256 MRRGAAFILL 265 (365)
T ss_dssp SCTTCEEEEC
T ss_pred CCCCcEEEEC
Confidence 5555555543
No 319
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=22.50 E-value=1.6e+02 Score=23.25 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=13.7
Q ss_pred cCCEEEeecCCCCcchHHHHHHhcCCC
Q 022615 159 SGDVFVMPSESETLGLVVLEAMSSGIP 185 (294)
Q Consensus 159 ~ad~~l~ps~~e~~~~~~~Ea~a~G~p 185 (294)
.+|+.+.....+..+..+.|+...|++
T Consensus 64 ~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~ 90 (288)
T 1oi7_A 64 EVDASIIFVPAPAAADAALEAAHAGIP 90 (288)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHTTCS
T ss_pred CCCEEEEecCHHHHHHHHHHHHHCCCC
Confidence 566666544333444445555555555
No 320
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=22.39 E-value=3.3e+02 Score=22.40 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=59.4
Q ss_pred EEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh---cCCCEEe-ecC
Q 022615 120 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVG-VRA 191 (294)
Q Consensus 120 ~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a---~G~pvI~-~~~ 191 (294)
++.|+.+.+. ...+.......+......-+.++..+.+.. .|++++-... +.-|..+++.+. ..+|||. |..
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT~~ 81 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGH 81 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEET
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCC
Confidence 3455554432 233333333223333323333555555543 5887765432 334555555553 4577764 333
Q ss_pred CCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhCh
Q 022615 192 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 229 (294)
Q Consensus 192 ~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~~ 229 (294)
+.....+...+.|-.+++..|.+.+++...|..++...
T Consensus 82 ~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 82 GTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp TCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 33222221115677889999999999999999987643
No 321
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=22.32 E-value=75 Score=26.85 Aligned_cols=97 Identities=10% Similarity=-0.051 Sum_probs=53.1
Q ss_pred CceEEEeecccc-cccHHHHHHHHHhC-CCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEee
Q 022615 91 KPLIVHVGRLGV-EKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMP 166 (294)
Q Consensus 91 ~~~i~~~G~~~~-~k~~~~l~~~~~~~-~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~p 166 (294)
...++.+|--.. ...-...+.++... ++++++-+-+. ..+..++..+..++. +.....++.+++. ..|+++..
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~-~~~~~~~~a~~~g~~--~~~~~~~~~~ll~~~~vD~V~i~ 96 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSP-KIETSIATIQRLKLS--NATAFPTLESFASSSTIDMIVIA 96 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECS-SHHHHHHHHHHTTCT--TCEEESSHHHHHHCSSCSEEEEC
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeC-CHHHHHHHHHHcCCC--cceeeCCHHHHhcCCCCCEEEEe
Confidence 456777775100 01112345666677 78887644332 233344444433321 0001256777787 57988887
Q ss_pred cCCCCcchHHHHHHhcC------CCEEeec
Q 022615 167 SESETLGLVVLEAMSSG------IPVVGVR 190 (294)
Q Consensus 167 s~~e~~~~~~~Ea~a~G------~pvI~~~ 190 (294)
+....-...+.+++..| ++|++-.
T Consensus 97 tp~~~H~~~~~~al~aG~~~~~~khVl~EK 126 (438)
T 3btv_A 97 IQVASHYEVVMPLLEFSKNNPNLKYLFVEW 126 (438)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCEEEEES
T ss_pred CCcHHHHHHHHHHHHCCCCcccceeEEecC
Confidence 64333344567889999 9999853
No 322
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=22.30 E-value=3.3e+02 Score=22.43 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhCCeEEecc--hhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHH-HhhcCCCCCceEEEeec
Q 022615 23 MWLVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRW-RLSNGEPDKPLIVHVGR 99 (294)
Q Consensus 23 ~~~~~~~~~~~ad~ii~~s--~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~G~ 99 (294)
+.-..+.+-+.+|.|+.=. ....+.+.+.-+ +-|| ||.. +...|...-.+... +...+.-+...|.|+|.
T Consensus 116 l~DTarvLs~~~D~IviR~~~~~~~~~lA~~s~-----vPVI-Na~~-~~~HPtQaLaDl~Ti~E~~G~l~glkva~vGD 188 (365)
T 4amu_A 116 IEDTAKVLGRFYDGIEFRGFAQSDVDALVKYSG-----VPVW-NGLT-DDEHPTQIIADFMTMKEKFGNLKNKKIVFIGD 188 (365)
T ss_dssp HHHHHHHHHHHCSEEEEECSCHHHHHHHHHHHC-----SCEE-EEEC-SSCCHHHHHHHHHHHHHHHSSCTTCEEEEESS
T ss_pred HHHHHHHHHhhCcEEEEecCChhHHHHHHHhCC-----CCEE-eCCC-CCCCcHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence 4456677778899988743 344555555433 3344 4432 44455322111110 11112235678999998
Q ss_pred ccccccHHHHHHHHHhCCCcEEEEEcCCccH----HHHH----hhhcCCCeEEEecccchhHHHHHhcCCEEEeec
Q 022615 100 LGVEKSLDFLKRVMDRLPEARIAFIGDGPYR----EELE----KMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 167 (294)
Q Consensus 100 ~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~----~~~~----~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps 167 (294)
... .-...++.++..+ ++.+.++|...+. +.+. +.++..+..+. -.+++.+.+..||++....
T Consensus 189 ~~n-nva~Sl~~~~~~l-G~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~---~~~d~~eav~~aDVVytd~ 259 (365)
T 4amu_A 189 YKN-NVGVSTMIGAAFN-GMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLR---FSTDKILAAQDADVIYTDV 259 (365)
T ss_dssp TTS-HHHHHHHHHHHHT-TCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEE---EESCHHHHTTTCSEEEECC
T ss_pred CCc-chHHHHHHHHHHc-CCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEE---EECCHHHHhcCCCEEEecc
Confidence 742 2356677787777 7899999864322 1222 22222222111 1267788999999988743
No 323
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=22.28 E-value=1.7e+02 Score=19.18 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=57.9
Q ss_pred cEEEEEcCCcc-HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCC-CCcchHHHHHHh--------cCCCE
Q 022615 119 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--------SGIPV 186 (294)
Q Consensus 119 ~~l~i~G~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~-e~~~~~~~Ea~a--------~G~pv 186 (294)
.+++|+.+.+. ...+...+...+..+...-+.++....+.. .|++++-... +.-|..+++.+. ...|+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 90 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASI 90 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEE
Confidence 45666665443 233444444433222222222455554443 5888775443 233555565553 34666
Q ss_pred Eee-cCCCcccccccCCCCcceeecCCCCHHHHHHHHHHHhhC
Q 022615 187 VGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 228 (294)
Q Consensus 187 I~~-~~~~~~e~~~~~~~~~~g~~~~~~d~~~l~~~i~~ll~~ 228 (294)
|.. ......... ..+-.+++..|.+.+++.+.|..++..
T Consensus 91 i~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 91 IAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 553 322222222 345578999999999999999888654
No 324
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=22.22 E-value=1.5e+02 Score=23.47 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=50.4
Q ss_pred CeEEEec-ccch--hHHHHHhcCCEEEeecC-CCCcc-hHHHHHHhcCCCEEeecCCCcccccccCCCCcceeecCCCCH
Q 022615 141 PAVFTGM-LLGE--ELSQAYASGDVFVMPSE-SETLG-LVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDL 215 (294)
Q Consensus 141 ~v~~~g~-~~~~--~~~~~~~~ad~~l~ps~-~e~~~-~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~g~~~~~~d~ 215 (294)
+|.+.|. +|.+ ...+.+..||++|.-.. ..-+| ..+.++...|.|+|.-+......+-. .+....+ +-.++.
T Consensus 176 ~IV~FGE~lp~~~~~~~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~--~~~~~d~-~~~g~~ 252 (285)
T 3glr_A 176 DIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAW--HPRSRDV-AQLGDV 252 (285)
T ss_dssp EECCTTSBCCGGGGGHHHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHH--SCCTTEE-EEESCH
T ss_pred cEEEeCCcCCHHHHHHHHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCcccc--CCCCccE-EEcCCH
Confidence 3556554 3432 33466788998886422 12122 12335666788887665544332210 0111222 223477
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHHHH
Q 022615 216 DDCLSKLEPLLYNQELRETMGQAARQ 241 (294)
Q Consensus 216 ~~l~~~i~~ll~~~~~~~~~~~~~~~ 241 (294)
++....|.+.+-=.++.+++-+...+
T Consensus 253 ~~~~~~L~~~lgw~~el~~~~~~~~~ 278 (285)
T 3glr_A 253 VHGVESLVELLGWTEEMRDLVQRETG 278 (285)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhhHh
Confidence 77777777776544455555555444
No 325
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=22.20 E-value=2.3e+02 Score=23.87 Aligned_cols=75 Identities=15% Similarity=0.266 Sum_probs=45.1
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCC--eEEEecc---------cchhHHHHHhcCCEEEe--ecCC---CCcchHHHHHHh
Q 022615 118 EARIAFIGDGPYREELEKMFTGMP--AVFTGML---------LGEELSQAYASGDVFVM--PSES---ETLGLVVLEAMS 181 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~---------~~~~~~~~~~~ad~~l~--ps~~---e~~~~~~~Ea~a 181 (294)
+-++-|+|-|.--..+...+...+ |.....- ...++.++++.||++++ |... .-++...++.|-
T Consensus 156 gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk 235 (416)
T 3k5p_A 156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMK 235 (416)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCC
Confidence 457889998877666666665444 3333211 12478999999999886 3322 223455666666
Q ss_pred cCCCEEeecCC
Q 022615 182 SGIPVVGVRAG 192 (294)
Q Consensus 182 ~G~pvI~~~~~ 192 (294)
-|.-+|-+..+
T Consensus 236 ~gailIN~aRG 246 (416)
T 3k5p_A 236 KGAFLINNARG 246 (416)
T ss_dssp TTEEEEECSCT
T ss_pred CCcEEEECCCC
Confidence 66666654333
No 326
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=22.20 E-value=2.4e+02 Score=22.38 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=40.5
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCC--eEEEecccc-----------hhHHHHHhcCCEEEe--ecCCC---CcchHHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMP--AVFTGMLLG-----------EELSQAYASGDVFVM--PSESE---TLGLVVLEA 179 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~~~~-----------~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea 179 (294)
+-++-|+|-|..-..+.+.+...+ |.....-+. .++.++++.||++++ |...+ -++...+..
T Consensus 142 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~ 221 (307)
T 1wwk_A 142 GKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKL 221 (307)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHH
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhc
Confidence 456778887765555555544333 333222111 246788999998886 33222 233456677
Q ss_pred HhcCCCEEee
Q 022615 180 MSSGIPVVGV 189 (294)
Q Consensus 180 ~a~G~pvI~~ 189 (294)
|.-|.-+|..
T Consensus 222 mk~ga~lin~ 231 (307)
T 1wwk_A 222 MKKTAILINT 231 (307)
T ss_dssp SCTTCEEEEC
T ss_pred CCCCeEEEEC
Confidence 7767666644
No 327
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=22.09 E-value=3.3e+02 Score=22.30 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=29.7
Q ss_pred HHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCCcchHHHHHHh-cCCCEEeecC
Q 022615 132 ELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMS-SGIPVVGVRA 191 (294)
Q Consensus 132 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~~~~~~~Ea~a-~G~pvI~~~~ 191 (294)
.+.+..++.++.+.-.+-+.+-.+++.. +|++=.+|. +-....++++++ .|+|||.+..
T Consensus 82 ~L~~~~~~~Gi~~~st~fD~~svd~l~~~~v~~~KI~S~-~~~N~pLL~~va~~gKPviLstG 143 (350)
T 3g8r_A 82 KLVAEMKANGFKAICTPFDEESVDLIEAHGIEIIKIASC-SFTDWPLLERIARSDKPVVASTA 143 (350)
T ss_dssp HHHHHHHHTTCEEEEEECSHHHHHHHHHTTCCEEEECSS-STTCHHHHHHHHTSCSCEEEECT
T ss_pred HHHHHHHHcCCcEEeccCCHHHHHHHHHcCCCEEEECcc-cccCHHHHHHHHhhCCcEEEECC
Confidence 3444444555554444333333333333 566655554 334445665554 6788777644
No 328
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1
Probab=22.03 E-value=1.8e+02 Score=20.09 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=26.9
Q ss_pred HHHHHhCCeEEecchhhHHHHHHhccC-CcCceEEee
Q 022615 28 KFLHRAADLTLVPSVAIGKDLEAARVT-AANKIRIWK 63 (294)
Q Consensus 28 ~~~~~~ad~ii~~s~~~~~~~~~~~~~-~~~~i~~i~ 63 (294)
...+..+|.|++.....++.+.+..+. ...++..+.
T Consensus 74 ~~~~~~~DlIi~m~~~~~~~l~~~~p~~~~~kv~~l~ 110 (146)
T 1p8a_A 74 KADFSKFDVIAALDQSILSDINSMKPSNCRAKVVLFN 110 (146)
T ss_dssp SHHHHSCSEEEESSHHHHHHHHHHCCSSCSCEEEECS
T ss_pred HhHhhcCCEEEEeChHHHHHHHHHCCcccCCeEEEeC
Confidence 345678999999999888888877765 245666654
No 329
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=21.69 E-value=85 Score=26.96 Aligned_cols=97 Identities=10% Similarity=-0.061 Sum_probs=53.8
Q ss_pred CceEEEeecccc-cccHHHHHHHHHhC-CCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHh--cCCEEEee
Q 022615 91 KPLIVHVGRLGV-EKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMP 166 (294)
Q Consensus 91 ~~~i~~~G~~~~-~k~~~~l~~~~~~~-~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~--~ad~~l~p 166 (294)
...|+.+|--.. ...-...+.++... ++++++-+-+ ...+..++..+..++. +.....++.+++. ..|+++..
T Consensus 39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d-~~~~~a~~~a~~~g~~--~~~~~~d~~ell~~~~vD~V~I~ 115 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYN-PTLKSSLQTIEQLQLK--HATGFDSLESFAQYKDIDMIVVS 115 (479)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEEC-SCHHHHHHHHHHTTCT--TCEEESCHHHHHHCTTCSEEEEC
T ss_pred cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEe-CCHHHHHHHHHHcCCC--cceeeCCHHHHhcCCCCCEEEEc
Confidence 456777775210 01113456677777 7888764433 2233444444433321 0001256777776 57988877
Q ss_pred cCCCCcchHHHHHHhcC------CCEEeec
Q 022615 167 SESETLGLVVLEAMSSG------IPVVGVR 190 (294)
Q Consensus 167 s~~e~~~~~~~Ea~a~G------~pvI~~~ 190 (294)
+....-.-.+.+|+.+| ++|++-.
T Consensus 116 tp~~~H~~~~~~al~aG~~~~~~khVl~EK 145 (479)
T 2nvw_A 116 VKVPEHYEVVKNILEHSSQNLNLRYLYVEW 145 (479)
T ss_dssp SCHHHHHHHHHHHHHHSSSCSSCCEEEEES
T ss_pred CCcHHHHHHHHHHHHCCCCcCCceeEEEeC
Confidence 64333344567899999 9999853
No 330
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=21.55 E-value=91 Score=23.13 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 117 PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
.++++.+-|-.+ +.+++.+...+..+.... ..+..+|.+.. .-..+++.|++.|+|||..+
T Consensus 11 ~~~~v~~sG~~~--~~~~~~i~~lGg~~~~~~---------~~~THlI~~~~--~rt~K~l~a~~~g~~IV~~~ 71 (209)
T 2etx_A 11 TAPKVLFTGVVD--ARGERAVLALGGSLAGSA---------AEASHLVTDRI--RRTVKFLCALGRGIPILSLD 71 (209)
T ss_dssp -CCEEEECSSCC--HHHHHHHHHTTCEECSST---------TTCSEEECSSC--CCSHHHHHHHHHTCCEECTH
T ss_pred CCcEEEEeCCCc--HHHHHHHHHCCCEEeCCC---------CCceEEEECCC--CCCHHHHHHHhcCCccccHH
Confidence 356677766543 234555655555443332 13666666542 12678999999999999764
No 331
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=21.40 E-value=72 Score=25.66 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=29.2
Q ss_pred hhHHHHHh--cCCEEEeecCCCCcchHHHHHHhcCCCEEeec
Q 022615 151 EELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 190 (294)
Q Consensus 151 ~~~~~~~~--~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~ 190 (294)
.++.+++. ..|+++..+....-...+.+++.+|++|++-.
T Consensus 56 ~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EK 97 (336)
T 2p2s_A 56 ASAEQLITDASIDLIACAVIPCDRAELALRTLDAGKDFFTAK 97 (336)
T ss_dssp SCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCHHHHhhCCCCCEEEEeCChhhHHHHHHHHHHCCCcEEEeC
Confidence 66778887 57988876654444455678999999999853
No 332
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=21.39 E-value=1.5e+02 Score=18.99 Aligned_cols=75 Identities=7% Similarity=0.038 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHhCCCcEEEEEc-CCc--cHHHHHhhhcCCCeEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHH
Q 022615 103 EKSLDFLKRVMDRLPEARIAFIG-DGP--YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLE 178 (294)
Q Consensus 103 ~k~~~~l~~~~~~~~~~~l~i~G-~~~--~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~E 178 (294)
..|.....+++++- .++++|+. +.+ ....+..+....+|-+....+.+++..........+..-...|+.-.+.+
T Consensus 20 v~G~~~v~kai~~g-ka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~~~~~vai~d~g~a~~i~~ 97 (101)
T 3on1_A 20 LTGEEQVVKAVQNG-QVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQMLGRAIGKHERVVIGVKDAGFSRKLAA 97 (101)
T ss_dssp EESHHHHHHHHHTT-CCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHHHHTTSSCCSEEEECCHHHHHHHHH
T ss_pred eECHHHHHHHHHcC-CCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCcCeEEEEEECccHHHHHHH
Confidence 35677788888764 45665554 433 23344444544455444445668888887775333333334455544444
No 333
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=21.21 E-value=2.5e+02 Score=23.45 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=46.3
Q ss_pred CCcEEEEEcCCccHHHHHhhhcCCC--eEEEec--------cc-chhHHHHHhcCCEEEe--ecCCC---CcchHHHHHH
Q 022615 117 PEARIAFIGDGPYREELEKMFTGMP--AVFTGM--------LL-GEELSQAYASGDVFVM--PSESE---TLGLVVLEAM 180 (294)
Q Consensus 117 ~~~~l~i~G~~~~~~~~~~~~~~~~--v~~~g~--------~~-~~~~~~~~~~ad~~l~--ps~~e---~~~~~~~Ea~ 180 (294)
.+-++-|+|-|.--..+.+.+...+ |..+.. .. ..++.++++.||++++ |...+ -++...+..|
T Consensus 144 ~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~m 223 (404)
T 1sc6_A 144 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLM 223 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhc
Confidence 3467888998876666666555443 333322 11 1368899999999886 33222 2445577777
Q ss_pred hcCCCEEeecCC
Q 022615 181 SSGIPVVGVRAG 192 (294)
Q Consensus 181 a~G~pvI~~~~~ 192 (294)
--|.-+|-...+
T Consensus 224 k~ga~lIN~aRg 235 (404)
T 1sc6_A 224 KPGSLLINASRG 235 (404)
T ss_dssp CTTEEEEECSCS
T ss_pred CCCeEEEECCCC
Confidence 777666654433
No 334
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=21.15 E-value=2.4e+02 Score=23.44 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=34.6
Q ss_pred HHHHHhhhcCCCeEEEecccchhHHHHHhc--CCEEEeecCCCCcchHHHHHHh-cCCCEEeecCC
Q 022615 130 REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMS-SGIPVVGVRAG 192 (294)
Q Consensus 130 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~--ad~~l~ps~~e~~~~~~~Ea~a-~G~pvI~~~~~ 192 (294)
...+.+..++.++.+.-.+-+.+-.+++.. +|++=.+|. +-....++++++ .|+|||.+...
T Consensus 103 ~~~L~~~~~~~Gi~~~stpfD~~svd~l~~~~vd~~KIgS~-~~~N~pLL~~va~~gKPViLStGm 167 (385)
T 1vli_A 103 ILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASY-EINHLPLLKYVARLNRPMIFSTAG 167 (385)
T ss_dssp HHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEEECGG-GTTCHHHHHHHHTTCSCEEEECTT
T ss_pred HHHHHHHHHHcCCcEEEccCCHHHHHHHHhcCCCEEEECcc-cccCHHHHHHHHhcCCeEEEECCC
Confidence 345555555666666555544444444433 466655554 333455666655 68888877543
No 335
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=21.14 E-value=35 Score=24.65 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=34.8
Q ss_pred HHHhcCCEEEeecCCCCcchH--HHHHHh-------cCCCEEeecCCCcccccccC---CCCcceeecCCCCHHHHHHHH
Q 022615 155 QAYASGDVFVMPSESETLGLV--VLEAMS-------SGIPVVGVRAGGIPDIIPED---QDGKIGYLFNPGDLDDCLSKL 222 (294)
Q Consensus 155 ~~~~~ad~~l~ps~~e~~~~~--~~Ea~a-------~G~pvI~~~~~~~~e~~~~~---~~~~~g~~~~~~d~~~l~~~i 222 (294)
-+...||.+|.-. .|+|+- ++|++. .++| +.-+ +....++... .......+.-.+|++++.+.+
T Consensus 93 ~~~~~sda~ivlp--GG~GTl~El~e~lt~~q~g~~~~kP-vll~-g~~~~l~~~~gfi~~~~~~~~~~~~~~~e~~~~l 168 (171)
T 1weh_A 93 RLLDLGAGYLALP--GGVGTLAELVLAWNLLYLRRGVGRP-LAVD-PYWLGLLKAHGEIAPEDVGLLRVVADEEDLRRFL 168 (171)
T ss_dssp HHHHHEEEEEECS--CCHHHHHHHHHHHHHHHTCSSCSCC-EEEC-GGGGGTCCCBTTBCHHHHTTSEECCSHHHHHHHH
T ss_pred HHHHhCCEEEEeC--CCccHHHHHHHHHHHHHhCccCCCe-EEEC-cchhhhHhhcCCCChhhcCeEEEeCCHHHHHHHH
Confidence 4556678776532 245554 788888 7899 7666 4443333000 001111222334777777666
Q ss_pred HH
Q 022615 223 EP 224 (294)
Q Consensus 223 ~~ 224 (294)
.+
T Consensus 169 ~~ 170 (171)
T 1weh_A 169 RS 170 (171)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 336
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=21.04 E-value=3e+02 Score=21.48 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=24.7
Q ss_pred hhHHHHHhcCCEEEeecCCCCcchHHHHHHhcCCCEEe
Q 022615 151 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 188 (294)
Q Consensus 151 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~pvI~ 188 (294)
+++.++++.+|+++......-++...++.|.-|.-+|-
T Consensus 205 ~~l~~~l~~aDvVi~~~p~~~i~~~~l~~mk~~~~lin 242 (293)
T 3d4o_A 205 SKAAQELRDVDVCINTIPALVVTANVLAEMPSHTFVID 242 (293)
T ss_dssp GGHHHHTTTCSEEEECCSSCCBCHHHHHHSCTTCEEEE
T ss_pred hhHHHHhcCCCEEEECCChHHhCHHHHHhcCCCCEEEE
Confidence 46778889999988755433344456676666655553
No 337
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=20.88 E-value=1.8e+02 Score=18.95 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=25.1
Q ss_pred eEEEecccchhHHHHHhcCCEEEeecCCCCcchHHHHHHh--cCCCEEeecC
Q 022615 142 AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS--SGIPVVGVRA 191 (294)
Q Consensus 142 v~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a--~G~pvI~~~~ 191 (294)
+.+.. .+..++.+.+...|++++..... +-..=++..+ .|+||.+-+.
T Consensus 37 v~i~a-~~~~~~~~~~~~~DvvLLgPQV~-y~~~~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 37 VIANS-GAYGAHYDIMGVYDLIILAPQVR-SYYREMKVDAERLGIQIVATRG 86 (108)
T ss_dssp EEEEE-EETTSCTTTGGGCSEEEECGGGG-GGHHHHHHHHTTTTCEEEECCH
T ss_pred eEEEE-cchHHHHhhccCCCEEEEChHHH-HHHHHHHHHhhhcCCcEEEeCH
Confidence 44433 23355666677889888743211 1222233333 4888876543
No 338
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=20.87 E-value=85 Score=21.60 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=33.2
Q ss_pred EEeecccccccHHHHHHHHHhCCCcEEEEEcCCcc--HHHHHhhhcCCCeEE
Q 022615 95 VHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVF 144 (294)
Q Consensus 95 ~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~v~~ 144 (294)
+..+.+....-...+.++++..++.++.|-|.-+. ...+.+++.+.++.|
T Consensus 41 lt~~q~~~~~~~~~~~~~l~~~~~~~l~ing~l~~~~~~~YiklA~~~~i~f 92 (133)
T 2ohw_A 41 LTKGQVLRSKPYKEAEHELKNSHNVTLLINGELQYQSYSSYIQMASRYGVPF 92 (133)
T ss_dssp EEHHHHTSSSCCHHHHHHHHTCSSEEEEEETTSCHHHHHHHHHHHHHTTCCE
T ss_pred eeHHHHhchhHHHHHHHHHhhCCCcEEEEcCCCCHHHHHHHHHHHHHcCCCe
Confidence 44455666666778889999999999999997443 234444555555443
No 339
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.84 E-value=1.5e+02 Score=18.91 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=28.0
Q ss_pred ecCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHH
Q 022615 209 LFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWF 266 (294)
Q Consensus 209 ~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~l~~~~~~~ 266 (294)
+++|.+.+.++..|.++.++- ..+++.-.-.+. -. ||..-...=....|+.+.+.
T Consensus 5 ~~dpeElr~Fa~~L~~F~d~L--q~~~~~L~~~f~~L~-sWqDqkr~kFee~fe~l~s~ 60 (94)
T 3fx7_A 5 QMDTEEVREFVGHLERFKELL--REEVNSLSNHFHNLE-SWRDARRDKFSEVLDNLKST 60 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCC-SCCSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccc-hHhhHHHHHHHHHHHHHHHH
Confidence 455666677777777775432 223322222222 13 67644433334666666544
No 340
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=20.49 E-value=1.3e+02 Score=23.68 Aligned_cols=55 Identities=9% Similarity=0.044 Sum_probs=32.4
Q ss_pred EEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEee
Q 022615 37 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG 98 (294)
Q Consensus 37 ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 98 (294)
|+++........++.+|-..+-..++|.|.|+-.|.+......... +--.+++.|
T Consensus 9 Vv~t~~~l~~~v~~I~Gd~v~V~~lv~~g~dPH~yeptp~d~~~l~-------~Adlvv~nG 63 (282)
T 3mfq_A 9 VAVTTSFLNDMVYQLAGDEVERDLLIPAGEDPHLYVAKSSDLSKLQ-------KADLVLYHG 63 (282)
T ss_dssp EEESSHHHHHHHHHHHTTSSEEEECSCTTSCTTTCCCCHHHHHHHH-------HCSEEEECC
T ss_pred EEEEcHHHHHHHHHHcCCceEEEEecCCCCCCccCCCCHHHHHHHH-------cCCEEEEcC
Confidence 4555555666666666533233346689999999988654433222 233577777
No 341
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=20.19 E-value=3.6e+02 Score=22.97 Aligned_cols=92 Identities=12% Similarity=0.035 Sum_probs=49.8
Q ss_pred eEEEeecccccccHHHHHHHHHhCCCcEEEEEcCCccHHHHHhhhcCCCeEE--EecccchhHHHHHhcCCEEEeecCCC
Q 022615 93 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVF--TGMLLGEELSQAYASGDVFVMPSESE 170 (294)
Q Consensus 93 ~i~~~G~~~~~k~~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~v~~--~g~~~~~~~~~~~~~ad~~l~ps~~e 170 (294)
.++.+|. + .- -..++.++...++.++.+++... +..+++....++.. ....+.+++.++++.+|+++......
T Consensus 25 ~VlIiGA-G-gi-G~aia~~L~~~~g~~V~v~~R~~--~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~ 99 (467)
T 2axq_A 25 NVLLLGS-G-FV-AQPVIDTLAANDDINVTVACRTL--ANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYT 99 (467)
T ss_dssp EEEEECC-S-TT-HHHHHHHHHTSTTEEEEEEESSH--HHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG
T ss_pred EEEEECC-h-HH-HHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchh
Confidence 4555564 1 11 23455556655567877777643 33333333223332 22223357788899999999865422
Q ss_pred CcchHHHHHHhcCCCEEee
Q 022615 171 TLGLVVLEAMSSGIPVVGV 189 (294)
Q Consensus 171 ~~~~~~~Ea~a~G~pvI~~ 189 (294)
..+.....++..|+.++..
T Consensus 100 ~~~~v~~a~l~~g~~vvd~ 118 (467)
T 2axq_A 100 FHPNVVKSAIRTKTDVVTS 118 (467)
T ss_dssp GHHHHHHHHHHHTCEEEEC
T ss_pred hhHHHHHHHHhcCCEEEEe
Confidence 2222334556677777653
No 342
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=20.16 E-value=2.9e+02 Score=22.35 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=41.4
Q ss_pred CcEEEEEcCCccHHHHHhhhcCCCeEEEec--ccc-----------hhHHHHHhcCCEEEe--ecCCCC---cchHHHHH
Q 022615 118 EARIAFIGDGPYREELEKMFTGMPAVFTGM--LLG-----------EELSQAYASGDVFVM--PSESET---LGLVVLEA 179 (294)
Q Consensus 118 ~~~l~i~G~~~~~~~~~~~~~~~~v~~~g~--~~~-----------~~~~~~~~~ad~~l~--ps~~e~---~~~~~~Ea 179 (294)
+-++-|+|-|..-..+.+.++..+..+.++ -.. .++.++++.||++++ |...+. ++...++.
T Consensus 165 g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~ 244 (335)
T 2g76_A 165 GKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQ 244 (335)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTT
T ss_pred cCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhh
Confidence 457888888876666666665554333322 111 257788999998886 332222 23345556
Q ss_pred HhcCCCEEee
Q 022615 180 MSSGIPVVGV 189 (294)
Q Consensus 180 ~a~G~pvI~~ 189 (294)
|.-|.-+|-.
T Consensus 245 mk~gailIN~ 254 (335)
T 2g76_A 245 CKKGVRVVNC 254 (335)
T ss_dssp SCTTEEEEEC
T ss_pred CCCCcEEEEC
Confidence 6555555543
No 343
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=20.13 E-value=2.4e+02 Score=22.00 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=33.8
Q ss_pred EEecchhhHHHHHHhccCCcCceEEeeccccCCCCCCCccchHHHHHhhcCCCCCceEEEee
Q 022615 37 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG 98 (294)
Q Consensus 37 ii~~s~~~~~~~~~~~~~~~~~i~~i~~gvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 98 (294)
|++.........++.+|-..+-..++|.|.|+-.|.+......... +--.+++.|
T Consensus 2 Vv~s~~p~~~~v~~I~Gd~v~V~~l~~~g~dPH~yeptp~d~~~l~-------~Adlvv~~G 56 (284)
T 2prs_A 2 VVASLKPVGFIASAIADGVTETEVLLPDGASEHDYSLRPSDVKRLQ-------NADLVVWVG 56 (284)
T ss_dssp EEESSHHHHHHHHHHHTTTSCEEESSCTTCBTTBCCCCTTHHHHHH-------HCSEEEECC
T ss_pred EEEEcHHHHHHHHHHcCCceEEEeCCCCCCCCccccCCHHHHHHHH-------cCCEEEEcC
Confidence 4555566666667766643233345688999999988654433222 234677877
No 344
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=20.01 E-value=2e+02 Score=23.28 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=0.0
Q ss_pred EEEEEcCCccHHHHHhhhcCCCeEEEecccchh------------HHHHHhcCCEEEe-----ecCCCCcchHHHHHHhc
Q 022615 120 RIAFIGDGPYREELEKMFTGMPAVFTGMLLGEE------------LSQAYASGDVFVM-----PSESETLGLVVLEAMSS 182 (294)
Q Consensus 120 ~l~i~G~~~~~~~~~~~~~~~~v~~~g~~~~~~------------~~~~~~~ad~~l~-----ps~~e~~~~~~~Ea~a~ 182 (294)
++-|+|-|.--..+.+.+...+....++-+..+ +.++++.||++++ +....-+....++.|--
T Consensus 143 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ 222 (334)
T 2pi1_A 143 TLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKD 222 (334)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT
T ss_pred eEEEECcCHHHHHHHHHHHHCcCEEEEECCCcchhhHhcCceecCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhhCCC
Q ss_pred CCCEEeecCCCccc
Q 022615 183 GIPVVGVRAGGIPD 196 (294)
Q Consensus 183 G~pvI~~~~~~~~e 196 (294)
|.-+|-+..++.-+
T Consensus 223 gailIN~aRg~~vd 236 (334)
T 2pi1_A 223 GVYLINTARGKVVD 236 (334)
T ss_dssp TEEEEECSCGGGBC
T ss_pred CcEEEECCCCcccC
Done!