Query 022616
Match_columns 294
No_of_seqs 192 out of 393
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nvm_A FDXN element excision c 20.6 50 0.0017 26.8 2.3 43 110-163 71-113 (126)
2 1x3x_A Cytochrome B5; hemoprot 19.7 64 0.0022 23.5 2.5 29 98-127 5-34 (82)
3 1cxy_A Cytochrome B5; helix, b 18.3 71 0.0024 23.7 2.5 29 98-127 9-38 (90)
4 2ibj_A Cytochrome B5, CYTB5; F 18.2 73 0.0025 23.4 2.6 29 98-127 8-37 (88)
5 1hko_A Cytochrome B5; electron 17.9 79 0.0027 24.3 2.8 29 98-127 10-39 (104)
6 1xhj_A Nitrogen fixation prote 16.4 1.8E+02 0.0062 21.8 4.4 53 110-166 27-83 (88)
7 3lf5_A Cytochrome B5 reductase 16.2 98 0.0033 22.9 2.9 29 99-128 8-37 (88)
8 3c66_C PRE-mRNA polyadenylatio 15.9 42 0.0014 19.8 0.6 11 155-165 1-11 (26)
9 1cyo_A Cytochrome B5; electron 15.6 72 0.0025 23.9 2.0 29 98-127 6-35 (93)
10 3fpn_A Geobacillus stearotherm 15.1 1.3E+02 0.0046 23.6 3.5 29 97-126 33-61 (119)
No 1
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=20.65 E-value=50 Score=26.76 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=27.4
Q ss_pred cCcEEEEEECCEEEEEeccCCccchhHHHHHHHHHHHHhcCCCCCCeEEEeeCC
Q 022616 110 TAHFRLILVNNKVYIHKYKQSIQTRDVFTIWGILQLLRKYPGRLPDLELMFDCD 163 (294)
Q Consensus 110 ~g~~rv~I~nGklYv~~~~~~~~~R~~~tl~~ll~ll~~~p~~LPDmEfvfN~~ 163 (294)
...+++.|+|||++++..+ . ..+|..-|.. ..+|--++|+-..
T Consensus 71 ~~iiHldIkdgKIWIq~D~--T-------E~gIa~eLv~--~GIPk~DIVLgFh 113 (126)
T 2nvm_A 71 HIILYLQIQNGKIWIEEDS--T-------NLAIVDEMLV--AGIPQTDIILGFH 113 (126)
T ss_dssp EEEEEEEEETTEEEEEECS--S-------TTHHHHHHHH--TTCCGGGEEETTS
T ss_pred EEEEEEEEeCCeEEEEeCC--c-------hhhHHHHHHH--cCCCHHHEEEccC
Confidence 4568999999999999842 1 2344444444 2677555555443
No 2
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=19.68 E-value=64 Score=23.46 Aligned_cols=29 Identities=14% Similarity=0.359 Sum_probs=20.0
Q ss_pred CCCHHHHHHhhccCcEEEEEECCEEE-EEec
Q 022616 98 GITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (294)
Q Consensus 98 GItre~le~a~~~g~~rv~I~nGklY-v~~~ 127 (294)
-+|+++|.+-...+.+ .+|++|+|| |..+
T Consensus 5 ~~t~~ev~~h~~~~~~-wv~i~g~VYDvT~f 34 (82)
T 1x3x_A 5 KYTKEEVAKHNTQNDL-WIIYDGEVHDMTSF 34 (82)
T ss_dssp EECHHHHHTCEETTEE-EEEETTEEEECGGG
T ss_pred ccCHHHHHhhCCCCCE-EEEECCEEEECCcc
Confidence 3678888774333444 789999999 5544
No 3
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=18.29 E-value=71 Score=23.70 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=20.0
Q ss_pred CCCHHHHHHhhccCcEEEEEECCEEE-EEec
Q 022616 98 GITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (294)
Q Consensus 98 GItre~le~a~~~g~~rv~I~nGklY-v~~~ 127 (294)
-+|+++|.+-...+.+ .+|++|+|| |..+
T Consensus 9 ~~t~~Ev~~h~~~~~~-wv~i~g~VYDvT~f 38 (90)
T 1cxy_A 9 VFTLEQVAEHHSPDDC-WMAIHGKVYDLTPY 38 (90)
T ss_dssp BCCHHHHTTCEETTEE-EEEETTEEEECTTT
T ss_pred CcCHHHHHHhcCCCCE-EEEECCEEEECccc
Confidence 4788888664334444 789999999 5444
No 4
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=18.21 E-value=73 Score=23.44 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=20.3
Q ss_pred CCCHHHHHHhhccCcEEEEEECCEEE-EEec
Q 022616 98 GITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (294)
Q Consensus 98 GItre~le~a~~~g~~rv~I~nGklY-v~~~ 127 (294)
-+|+++|.+-...+.+ .+|++|+|| |..+
T Consensus 8 ~~t~~ev~~h~~~~~~-wv~i~g~VYDvT~f 37 (88)
T 2ibj_A 8 YFTRAEVAKNNTKDKN-WFIIHNNVYDVTAF 37 (88)
T ss_dssp EECHHHHHTSEETTEE-EEEETTEEEECGGG
T ss_pred ccCHHHHHHhCCCCCE-EEEECCEEEECCcc
Confidence 3678888764334444 789999999 5555
No 5
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=17.91 E-value=79 Score=24.29 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=20.2
Q ss_pred CCCHHHHHHhhccCcEEEEEECCEEE-EEec
Q 022616 98 GITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (294)
Q Consensus 98 GItre~le~a~~~g~~rv~I~nGklY-v~~~ 127 (294)
-+|+++|.+-...+.+ .+|++|+|| |..+
T Consensus 10 ~~t~~Ev~~h~~~~~~-wv~i~g~VYDvT~f 39 (104)
T 1hko_A 10 YYTLEEIQKHNNSKST-WLILHYKVYDLTKF 39 (104)
T ss_dssp EECHHHHHHCBSSSSB-EEEETTEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCE-EEEECCEEEECCcc
Confidence 3678888774333444 789999999 5554
No 6
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=16.44 E-value=1.8e+02 Score=21.76 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=35.4
Q ss_pred cCcEE-EEEECCEEEEEeccCC--ccchhHHHH-HHHHHHHHhcCCCCCCeEEEeeCCCcc
Q 022616 110 TAHFR-LILVNNKVYIHKYKQS--IQTRDVFTI-WGILQLLRKYPGRLPDLELMFDCDDRP 166 (294)
Q Consensus 110 ~g~~r-v~I~nGklYv~~~~~~--~~~R~~~tl-~~ll~ll~~~p~~LPDmEfvfN~~D~P 166 (294)
.|-+. +-|.+|.+||.-.|.+ -++- ..|+ .+|.++|+. .+|++.-+..+.|.-
T Consensus 27 GGdvelv~v~~g~V~V~L~GaC~gCpss-~~TLk~gIE~~L~~---~vPev~~V~~v~~~~ 83 (88)
T 1xhj_A 27 GGDCTLVDVEDGIVKLQLHGACGTCPSS-TITLKAGIERALHE---EVPGVIEVEQVFLEH 83 (88)
T ss_dssp SCEEEEEECCSSEEEEEEESSCCSSCHH-HHHHHHHHHHHHHH---HSTTCCEEEEEECCC
T ss_pred CCeEEEEEEECCEEEEEEeecCCCCcch-HHHHHHHHHHHHHH---hCCCceEEEeccccc
Confidence 44433 3356899999886543 2332 3455 499999987 579998888877763
No 7
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=16.16 E-value=98 Score=22.94 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=20.1
Q ss_pred CCHHHHHHhhccCcEEEEEECCEEE-EEecc
Q 022616 99 ITRDMLERANQTAHFRLILVNNKVY-IHKYK 128 (294)
Q Consensus 99 Itre~le~a~~~g~~rv~I~nGklY-v~~~~ 128 (294)
+|.+++.+-...+.+ .+|++|+|| |..+-
T Consensus 8 ~t~~Ev~~h~~~~~~-wv~i~g~VYDvT~f~ 37 (88)
T 3lf5_A 8 VTEEELKKHNKKDDC-WICIRGFVYNVSPYM 37 (88)
T ss_dssp ECHHHHHHCEETTEE-EEEETTEEEECGGGT
T ss_pred eCHHHHHhhCCCCCE-EEEECCEEEECccch
Confidence 568888774334454 678899999 66653
No 8
>3c66_C PRE-mRNA polyadenylation factor FIP1; peptide-protein complex, mRNA processing, nucleus, RNA-bindi transferase, phosphoprotein; HET: MES; 2.60A {Saccharomyces cerevisiae}
Probab=15.89 E-value=42 Score=19.84 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=8.7
Q ss_pred CeEEEeeCCCc
Q 022616 155 DLELMFDCDDR 165 (294)
Q Consensus 155 DmEfvfN~~D~ 165 (294)
|+||+|.++--
T Consensus 1 DvEfIIs~G~D 11 (26)
T 3c66_C 1 DLEVIISLGPD 11 (26)
T ss_dssp CCCEESCSSSS
T ss_pred CeEEEEecCCC
Confidence 78999988743
No 9
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=15.63 E-value=72 Score=23.86 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=20.0
Q ss_pred CCCHHHHHHhhccCcEEEEEECCEEE-EEec
Q 022616 98 GITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (294)
Q Consensus 98 GItre~le~a~~~g~~rv~I~nGklY-v~~~ 127 (294)
-+|+++|.+-...+-+ .+|++|+|| |..+
T Consensus 6 ~~t~~Ev~~h~~~~~~-wv~i~g~VYDvT~f 35 (93)
T 1cyo_A 6 YYTLEEIQKHNNSKST-WLILHYKVYDLTKF 35 (93)
T ss_dssp EECHHHHTTCEETTEE-EEEETTEEEECTTT
T ss_pred ccCHHHHHhhCCCCCE-EEEECCEEEECCCc
Confidence 3678888664334444 789999999 5555
No 10
>3fpn_A Geobacillus stearothermophilus UVRA interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=15.11 E-value=1.3e+02 Score=23.64 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=23.6
Q ss_pred CCCCHHHHHHhhccCcEEEEEECCEEEEEe
Q 022616 97 TGITRDMLERANQTAHFRLILVNNKVYIHK 126 (294)
Q Consensus 97 ~GItre~le~a~~~g~~rv~I~nGklYv~~ 126 (294)
.|--++.++..++.|..|+.| ||++|-..
T Consensus 33 Kg~~~~ll~~l~~~Gf~Rvrv-DGe~~~l~ 61 (119)
T 3fpn_A 33 KGTHAKTLEDIRKQGYVRVRI-DREMRELT 61 (119)
T ss_dssp CSCCHHHHHHHHHTTCCEEEE-TTEEEETT
T ss_pred CCcHHHHHHHHHhCCCeEEEE-CCEEEecC
Confidence 577789999999999998766 89988544
Done!