Query 022616
Match_columns 294
No_of_seqs 192 out of 393
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 08:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022616.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022616hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1veha_ d.52.8.1 (A:) HIRA-int 26.3 41 0.003 23.7 4.6 48 115-165 40-89 (92)
2 d2ozga1 d.106.1.4 (A:291-395) 20.7 48 0.0035 23.4 4.0 28 87-128 23-50 (105)
3 d1tf5a1 a.162.1.1 (A:227-348) 18.0 27 0.0019 25.9 2.0 33 114-148 79-113 (122)
4 d1xhja_ d.52.8.1 (A:) Nitrogen 18.0 77 0.0056 22.0 4.5 45 115-162 33-79 (88)
5 d1kbia2 d.120.1.1 (A:1-97) Fla 17.4 30 0.0021 24.5 2.1 30 97-127 9-39 (97)
6 d2nvma1 d.326.1.1 (A:2-118) Xi 16.9 32 0.0024 25.6 2.3 18 110-127 69-86 (117)
7 d1nkta1 a.162.1.1 (A:226-349) 14.6 25 0.0018 26.2 1.0 33 114-148 81-115 (124)
8 d1cxya_ d.120.1.1 (A:) Cytochr 14.3 49 0.0036 22.3 2.5 28 99-127 5-33 (81)
9 d1t3ta1 a.5.10.1 (A:153-220) F 13.0 14 0.00099 25.2 -0.9 7 286-292 62-68 (68)
10 d2nlva1 d.326.1.1 (A:1-111) Hy 13.0 66 0.0048 23.6 3.1 18 110-127 56-73 (111)
No 1
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.33 E-value=41 Score=23.72 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=34.5
Q ss_pred EEEECCEEEEEeccCCcc-chhHHHH-HHHHHHHHhcCCCCCCeEEEeeCCCc
Q 022616 115 LILVNNKVYIHKYKQSIQ-TRDVFTI-WGILQLLRKYPGRLPDLELMFDCDDR 165 (294)
Q Consensus 115 v~I~nGklYv~~~~~~~~-~R~~~tl-~~ll~ll~~~p~~LPDmEfvfN~~D~ 165 (294)
+-|.+|.|||.-.+.+.. .-...|+ .+|.++|+. .+|.+.-+..+.|.
T Consensus 40 v~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~---~vpev~~V~~v~~~ 89 (92)
T d1veha_ 40 RGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF---YIPEVEGVEQVSGP 89 (92)
T ss_dssp EEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHH---HCSSCCCEEECSCS
T ss_pred EEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHH---HCCCcceEEEcCCC
Confidence 568899999998764432 1122344 788888887 68999988888774
No 2
>d2ozga1 d.106.1.4 (A:291-395) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=20.74 E-value=48 Score=23.42 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=22.3
Q ss_pred HhhcccccccCCCCHHHHHHhhccCcEEEEEECCEEEEEecc
Q 022616 87 IHEDLSPWKVTGITRDMLERANQTAHFRLILVNNKVYIHKYK 128 (294)
Q Consensus 87 I~~DL~Pw~~~GItre~le~a~~~g~~rv~I~nGklYv~~~~ 128 (294)
|..++.||. .|.+++.|.+|+.-++...
T Consensus 23 V~D~~~~~N--------------~G~~~l~~~~G~~~v~~~~ 50 (105)
T d2ozga1 23 VQDDLLATN--------------QGKFILSVANGKSEVTKGG 50 (105)
T ss_dssp EECSSCGGG--------------SEEEEEEEETTEEEEEECS
T ss_pred EeCCCCccC--------------CceEEEEEeCCeEEEeECC
Confidence 566677775 6889999999999988743
No 3
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=17.99 E-value=27 Score=25.90 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=23.7
Q ss_pred EEEEECCEEEEEec--cCCccchhHHHHHHHHHHHHh
Q 022616 114 RLILVNNKVYIHKY--KQSIQTRDVFTIWGILQLLRK 148 (294)
Q Consensus 114 rv~I~nGklYv~~~--~~~~~~R~~~tl~~ll~ll~~ 148 (294)
.|+|+||++-+.+. |+..+-|.. -.||||+|..
T Consensus 79 ~YiV~~~~v~ivDe~TGR~~~gr~~--~~GlhQaiEa 113 (122)
T d1tf5a1 79 DYVVEDGQVVIVDSFTGRLMKGRRY--SEGLHQAIEA 113 (122)
T ss_dssp TEEEETTEEEEBCTTTCCBCTTCCC--STTHHHHHHH
T ss_pred ceeecCCeEEEEeccCCCCccCccc--CcHHHHHHHH
Confidence 59999999998883 454444421 3599999975
No 4
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=17.96 E-value=77 Score=21.96 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=30.9
Q ss_pred EEEECCEEEEEeccCCcc-chhHHHH-HHHHHHHHhcCCCCCCeEEEeeC
Q 022616 115 LILVNNKVYIHKYKQSIQ-TRDVFTI-WGILQLLRKYPGRLPDLELMFDC 162 (294)
Q Consensus 115 v~I~nGklYv~~~~~~~~-~R~~~tl-~~ll~ll~~~p~~LPDmEfvfN~ 162 (294)
+-|.+|.+||.-.|.+-. .-...|+ .+|.++|+. .+|++.-+.++
T Consensus 33 v~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~---~vpev~~V~~V 79 (88)
T d1xhja_ 33 VDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHE---EVPGVIEVEQV 79 (88)
T ss_dssp EECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHH---HSTTCCEEEEE
T ss_pred EeccCCEEEEEecCCCCCCccHHHHHHHHHHHHHHH---HCCCCceEEEe
Confidence 557899999988764332 1123455 889999987 58887766664
No 5
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.36 E-value=30 Score=24.48 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=21.7
Q ss_pred CCCCHHHHHHhhccCcEEEEEECCEEE-EEec
Q 022616 97 TGITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (294)
Q Consensus 97 ~GItre~le~a~~~g~~rv~I~nGklY-v~~~ 127 (294)
..||.++|.+-...+-+ .+|++|+|| +..+
T Consensus 9 ~~it~~EV~~H~~~~d~-Wvvi~g~VYDvT~f 39 (97)
T d1kbia2 9 QKISPAEVAKHNKPDDC-WVVINGYVYDLTRF 39 (97)
T ss_dssp CCBCTTHHHHCEETTEE-EEEETTEEEECTTT
T ss_pred CccCHHHHHHhCCCCCE-EEEECCEEEecchh
Confidence 35888888774444555 789999999 5554
No 6
>d2nvma1 d.326.1.1 (A:2-118) XisI {Anabaena variabilis [TaxId: 1172]}
Probab=16.89 E-value=32 Score=25.58 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.6
Q ss_pred cCcEEEEEECCEEEEEec
Q 022616 110 TAHFRLILVNNKVYIHKY 127 (294)
Q Consensus 110 ~g~~rv~I~nGklYv~~~ 127 (294)
...+|+-|+|||++++..
T Consensus 69 g~~iHidIkd~KIWIq~D 86 (117)
T d2nvma1 69 HIILYLQIQNGKIWIEED 86 (117)
T ss_dssp EEEEEEEEETTEEEEEEC
T ss_pred EEEEEEEEeCCeEEEEeC
Confidence 356899999999999984
No 7
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.57 E-value=25 Score=26.19 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=23.8
Q ss_pred EEEEECCEEEEEec--cCCccchhHHHHHHHHHHHHh
Q 022616 114 RLILVNNKVYIHKY--KQSIQTRDVFTIWGILQLLRK 148 (294)
Q Consensus 114 rv~I~nGklYv~~~--~~~~~~R~~~tl~~ll~ll~~ 148 (294)
.|+|.||++-+.+. |+..+-|.. -.||||+|..
T Consensus 81 dYiV~d~~v~ivDe~TGR~~~grr~--s~GLHQaiEa 115 (124)
T d1nkta1 81 DYIVRDGEVLIVDEFTGRVLIGRRY--NEGMHQAIEA 115 (124)
T ss_dssp TEEECSSCEEEBCSSSCCBCTTCCC--STTHHHHHHH
T ss_pred eEEEecCeEEEEeccCCCcccCCCc--ChHHHHHHHH
Confidence 59999999998873 454444421 3599999976
No 8
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}
Probab=14.28 E-value=49 Score=22.26 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=19.1
Q ss_pred CCHHHHHHhhccCcEEEEEECCEEE-EEec
Q 022616 99 ITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (294)
Q Consensus 99 Itre~le~a~~~g~~rv~I~nGklY-v~~~ 127 (294)
+|.+++.+-...+-+ .+|++|+|| +..+
T Consensus 5 ~t~~ev~~H~~~~d~-Wivi~g~VYDvT~f 33 (81)
T d1cxya_ 5 FTLEQVAEHHSPDDC-WMAIHGKVYDLTPY 33 (81)
T ss_dssp CCHHHHTTCEETTEE-EEEETTEEEECTTT
T ss_pred cCHHHHHhhCCCCCE-EEEECCEEEeccce
Confidence 678888664334445 688999999 5544
No 9
>d1t3ta1 a.5.10.1 (A:153-220) FGAM synthase PurL, linker domain {Salmonella typhimurium [TaxId: 90371]}
Probab=13.03 E-value=14 Score=25.15 Aligned_cols=7 Identities=29% Similarity=1.051 Sum_probs=4.6
Q ss_pred cccccCC
Q 022616 286 ASQCAHR 292 (294)
Q Consensus 286 ~d~C~yr 292 (294)
++||+||
T Consensus 62 SEHCrHK 68 (68)
T d1t3ta1 62 SEHCRHK 68 (68)
T ss_dssp SHHHHCH
T ss_pred hhhccCC
Confidence 4677775
No 10
>d2nlva1 d.326.1.1 (A:1-111) Hypothetical protein Ava3825 {Anabaena variabilis [TaxId: 1172]}
Probab=12.99 E-value=66 Score=23.55 Aligned_cols=18 Identities=6% Similarity=0.303 Sum_probs=15.6
Q ss_pred cCcEEEEEECCEEEEEec
Q 022616 110 TAHFRLILVNNKVYIHKY 127 (294)
Q Consensus 110 ~g~~rv~I~nGklYv~~~ 127 (294)
...+|+-|+|||++++..
T Consensus 56 g~~iHldI~d~KIWIq~D 73 (111)
T d2nlva1 56 RCVIHFDIKDGKIWLQQN 73 (111)
T ss_dssp EEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEeCCeEEEEeC
Confidence 356899999999999984
Done!