Query 022618
Match_columns 294
No_of_seqs 197 out of 553
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 1.4E-69 2.9E-74 483.2 0.3 214 6-286 1-215 (215)
2 PF00564 PB1: PB1 domain; Int 97.4 0.00042 9.1E-09 52.4 5.9 68 174-270 3-71 (84)
3 smart00666 PB1 PB1 domain. Pho 97.1 0.0025 5.5E-08 48.1 7.7 65 175-269 4-69 (81)
4 cd05992 PB1 The PB1 domain is 96.9 0.0053 1.1E-07 46.1 7.4 66 174-269 2-69 (81)
5 cd06407 PB1_NLP A PB1 domain i 96.8 0.0052 1.1E-07 48.6 6.8 55 174-257 2-56 (82)
6 cd06398 PB1_Joka2 The PB1 doma 96.8 0.005 1.1E-07 49.6 6.7 68 174-270 2-72 (91)
7 cd06396 PB1_NBR1 The PB1 domai 96.3 0.015 3.2E-07 46.5 6.4 53 175-257 3-55 (81)
8 cd06401 PB1_TFG The PB1 domain 96.1 0.042 9.1E-07 44.1 8.3 74 174-274 2-79 (81)
9 cd06403 PB1_Par6 The PB1 domai 95.5 0.033 7.2E-07 44.6 5.4 68 175-270 3-71 (80)
10 cd06409 PB1_MUG70 The MUG70 pr 95.1 0.048 1E-06 44.0 5.2 51 182-257 7-59 (86)
11 cd06402 PB1_p62 The PB1 domain 95.1 0.1 2.2E-06 42.2 7.0 59 173-258 1-64 (87)
12 cd06397 PB1_UP1 Uncharacterize 94.9 0.093 2E-06 42.3 6.4 66 175-270 3-69 (82)
13 cd06404 PB1_aPKC PB1 domain is 94.6 0.1 2.2E-06 42.1 5.9 55 175-258 3-57 (83)
14 cd06408 PB1_NoxR The PB1 domai 89.3 1.4 3E-05 35.7 6.3 65 173-269 3-68 (86)
15 cd06399 PB1_P40 The PB1 domain 67.0 9 0.0002 31.6 4.0 37 188-254 22-58 (92)
16 PF10411 DsbC_N: Disulfide bon 49.1 14 0.0003 27.0 2.1 17 243-259 34-50 (57)
17 PF11576 DUF3236: Protein of u 47.6 6.7 0.00014 35.0 0.2 11 12-22 99-109 (154)
18 cd06406 PB1_P67 A PB1 domain i 43.5 1.2E+02 0.0025 24.5 6.6 66 173-269 3-69 (80)
19 cd06395 PB1_Map2k5 PB1 domain 40.9 48 0.001 27.3 4.1 49 180-257 9-57 (91)
20 PF09840 DUF2067: Uncharacteri 34.8 16 0.00034 33.3 0.6 38 231-272 89-126 (190)
21 PF04809 HupH_C: HupH hydrogen 29.9 41 0.00088 28.5 2.2 32 241-272 72-113 (120)
22 COG4019 Uncharacterized protei 28.4 26 0.00056 31.0 0.8 12 12-23 100-111 (156)
23 COG3286 Uncharacterized protei 27.8 25 0.00055 32.7 0.7 40 229-272 90-129 (204)
24 KOG3938 RGS-GAIP interacting p 25.6 1.1E+02 0.0024 30.2 4.6 74 180-283 62-142 (334)
25 KOG3606 Cell polarity protein 21.2 1E+02 0.0022 30.6 3.4 78 172-279 18-101 (358)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=1.4e-69 Score=483.18 Aligned_cols=214 Identities=60% Similarity=0.923 Sum_probs=6.0
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCchhhhhcccccccCCCccccccccccccccceehhhhccccccCCCCCCCCCCC
Q 022618 6 LNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFSVSEAAAGRLFSPRGGGSSNNN 85 (294)
Q Consensus 6 lnlk~TELRLGLPGs~sper~~~~~~~~~~~~~~~~~~~~g~KRgFsda~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 85 (294)
||||+|||||||||+++|+... ...++...+ ++||+|+++|+.+....... .+.....
T Consensus 1 ln~~~TELrLGLPG~~~~~~~~--------~~~~~~~~~-~~kR~F~~aid~~~~~~~~~---------~~~~~~~---- 58 (215)
T PF02309_consen 1 LNLKATELRLGLPGSESPDASS--------SSSSKKSSS-GNKRGFSEAIDSSSSNSQSS---------SSSSSDS---- 58 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCchhhhhcccCCCCCCCCccc--------ccccccccC-cccccchhhhhhcccccccc---------ccccccc----
Confidence 7999999999999999997221 223344445 99999999998764111000 0000000
Q ss_pred CCCCCCccccCCCCCCCCcccCCCCcccccCCCCcccccccccCCCCCC-CcCCcccCCCccchhhccccccCCCCCchh
Q 022618 86 NNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKSHEIAP-SKAQVVGWPPIRSYRKNTMSSQSSKNDDDS 164 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~k~qVVGWPPIrs~Rkn~~~~~~~k~~~~~ 164 (294)
.... ......+ . ........+| +++|+|||||||+||+|++...
T Consensus 59 -----~~~~--------------~~~~~~~-----~---~~~~~~~~~p~~~~~~vgwpp~~s~r~n~~~~~-------- 103 (215)
T PF02309_consen 59 -----SSSS--------------SSSSTSS-----S---SSDSSSSSPPASKAQVVGWPPVRSFRKNSLSEK-------- 103 (215)
T ss_dssp ------------------------------------------------------BTTBS----S----------------
T ss_pred -----Cccc--------------ccccccc-----c---ccccccCCCCcccccccCCCccccccccccccc--------
Confidence 0000 0000000 0 0011234456 7899999999999999987721
Q ss_pred hhhcCCCcceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEE
Q 022618 165 EAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVL 244 (294)
Q Consensus 165 ~~k~~~~~~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvL 244 (294)
+.+..++||||+|||+||||||||++|+||++|+.+|++||.+|+| ++|+++ .+++..+.+++++++|+|
T Consensus 104 --~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i--~~~~~~------~~~~~~~~~~~~~~~~~l 173 (215)
T PF02309_consen 104 --QSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSI--EQCGSH------GLNESGLLDLLNGSEYVL 173 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --ccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCc--cccccc------cccchhhccccCCcceeE
Confidence 1123478999999999999999999999999999999999999988 888763 356677888888999999
Q ss_pred EEEcCCCCeEEccCcchhHHhhhceeeEEecCCcccCCChhh
Q 022618 245 TYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRA 286 (294)
Q Consensus 245 tYEDkEGDwMLVGDVPWemFv~svKRLrImk~Sea~glapr~ 286 (294)
||||+||||||||||||+|||++|||||||+.+|++||+|||
T Consensus 174 ~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~ 215 (215)
T PF02309_consen 174 VYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA 215 (215)
T ss_dssp ------------------------------------------
T ss_pred EEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence 999999999999999999999999999999999999999996
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.41 E-value=0.00042 Score=52.38 Aligned_cols=68 Identities=25% Similarity=0.435 Sum_probs=55.0
Q ss_pred eEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCe
Q 022618 174 YVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDW 253 (294)
Q Consensus 174 fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDw 253 (294)
-|||+..|. +=|.+.+..--+|++|...++..|... ...+.|.|.|.||||
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~----------------------------~~~~~l~Y~D~dgD~ 53 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL----------------------------DEDFQLKYKDEDGDL 53 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS----------------------------TSSEEEEEEETTSSE
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC----------------------------CccEEEEeeCCCCCE
Confidence 489999997 333588888889999999999999731 136999999999999
Q ss_pred EEccC-cchhHHhhhcee
Q 022618 254 MLVGD-VPWEMFTDSCRR 270 (294)
Q Consensus 254 MLVGD-VPWemFv~svKR 270 (294)
..+-+ .=|++.+..+++
T Consensus 54 V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 54 VTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHh
Confidence 98875 568888887753
No 3
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=97.15 E-value=0.0025 Score=48.13 Aligned_cols=65 Identities=26% Similarity=0.401 Sum_probs=52.0
Q ss_pred EEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeE
Q 022618 175 VKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM 254 (294)
Q Consensus 175 VKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwM 254 (294)
|||.-.|. -|.+-+..--+|++|.+.+.+.|... ...+.|.|+|.||||.
T Consensus 4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~~----------------------------~~~~~l~Y~Dedgd~v 53 (81)
T smart00666 4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGLD----------------------------NQSFTLKYQDEDGDLV 53 (81)
T ss_pred EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCCC----------------------------CCCeEEEEECCCCCEE
Confidence 68887554 67888888999999999999999731 1268999999999998
Q ss_pred EccC-cchhHHhhhce
Q 022618 255 LVGD-VPWEMFTDSCR 269 (294)
Q Consensus 255 LVGD-VPWemFv~svK 269 (294)
.+.+ .=|.+.+..++
T Consensus 54 ~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 54 SLTSDEDLEEAIEEYD 69 (81)
T ss_pred EecCHHHHHHHHHHHH
Confidence 7665 57777777665
No 4
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.90 E-value=0.0053 Score=46.07 Aligned_cols=66 Identities=27% Similarity=0.406 Sum_probs=52.0
Q ss_pred eEEEEEcCcccceeeecC-CCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCC
Q 022618 174 YVKVSMDGAPYLRKVDLK-TYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGD 252 (294)
Q Consensus 174 fVKV~MdG~pIGRKVDL~-~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGD 252 (294)
-|||+-.|. -|.+=+. ..-+|++|...|.+.|... . ..+.+.|.|.|||
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~-----~-----------------------~~~~l~y~D~e~d 51 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD-----A-----------------------VSFKLKYPDEDGD 51 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC-----C-----------------------CcEEEEeeCCCCC
Confidence 378888876 4555555 8899999999999999731 0 2589999999999
Q ss_pred eEEccC-cchhHHhhhce
Q 022618 253 WMLVGD-VPWEMFTDSCR 269 (294)
Q Consensus 253 wMLVGD-VPWemFv~svK 269 (294)
|..+.+ .=|++.++.++
T Consensus 52 ~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 52 LVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEEeCCHHHHHHHHHHHh
Confidence 999887 67777777765
No 5
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=96.79 E-value=0.0052 Score=48.56 Aligned_cols=55 Identities=24% Similarity=0.404 Sum_probs=44.1
Q ss_pred eEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCe
Q 022618 174 YVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDW 253 (294)
Q Consensus 174 fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDw 253 (294)
-|||...|. -+.+-|..--+|++|...+.++|.. . +.+.|.|-|.|.||||
T Consensus 2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~-----~----------------------~~~~f~LkY~Ddegd~ 52 (82)
T cd06407 2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL-----D----------------------DMSAFDLKYLDDDEEW 52 (82)
T ss_pred EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC-----C----------------------CCCeeEEEEECCCCCe
Confidence 489999887 5556666667999999999999973 1 1147999999999999
Q ss_pred EEcc
Q 022618 254 MLVG 257 (294)
Q Consensus 254 MLVG 257 (294)
.++-
T Consensus 53 v~lt 56 (82)
T cd06407 53 VLLT 56 (82)
T ss_pred EEee
Confidence 8764
No 6
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=96.76 E-value=0.005 Score=49.63 Aligned_cols=68 Identities=26% Similarity=0.290 Sum_probs=50.1
Q ss_pred eEEEEEcCcccceeeecC---CCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCC
Q 022618 174 YVKVSMDGAPYLRKVDLK---TYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKD 250 (294)
Q Consensus 174 fVKV~MdG~pIGRKVDL~---~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkE 250 (294)
-|||.-+|.-+=-++++. ..-+|++|...+.+.|... ...+|+|.|.|.|
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~---------------------------~~~~~~l~Y~Ded 54 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS---------------------------PDADLSLTYTDED 54 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC---------------------------CCCcEEEEEECCC
Confidence 489999998444455543 4679999999999999631 1247999999999
Q ss_pred CCeEEccCcchhHHhhhcee
Q 022618 251 GDWMLVGDVPWEMFTDSCRR 270 (294)
Q Consensus 251 GDwMLVGDVPWemFv~svKR 270 (294)
|||..+-+. +.|...+.+
T Consensus 55 gd~V~l~~D--~DL~~a~~~ 72 (91)
T cd06398 55 GDVVTLVDD--NDLTDAIQY 72 (91)
T ss_pred CCEEEEccH--HHHHHHHHH
Confidence 999988765 444444443
No 7
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.27 E-value=0.015 Score=46.53 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=45.0
Q ss_pred EEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeE
Q 022618 175 VKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM 254 (294)
Q Consensus 175 VKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwM 254 (294)
|||.-.|.-+--+++-+..-+|++|...+.++|.. + .+.|.|-|.||||.
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l----------------------------~--~f~lKYlDde~e~v 52 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL----------------------------N--DIQIKYVDEENEEV 52 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC----------------------------C--cceeEEEcCCCCEE
Confidence 79999998777777777788999999999999973 1 47899999999998
Q ss_pred Ecc
Q 022618 255 LVG 257 (294)
Q Consensus 255 LVG 257 (294)
++-
T Consensus 53 ~ls 55 (81)
T cd06396 53 SVN 55 (81)
T ss_pred EEE
Confidence 874
No 8
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=96.13 E-value=0.042 Score=44.08 Aligned_cols=74 Identities=18% Similarity=0.436 Sum_probs=50.7
Q ss_pred eEEEEEcCcccceeeecCCCC-ChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCC
Q 022618 174 YVKVSMDGAPYLRKVDLKTYS-SYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGD 252 (294)
Q Consensus 174 fVKV~MdG~pIGRKVDL~~~~-sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGD 252 (294)
-+|+.-.|. -|.+=+..-. +|.+|...+.+.|.. .+.+ ...+.+.|.|.|||
T Consensus 2 iiK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~------~~~~-------------------~~~flIKYkD~dGD 54 (81)
T cd06401 2 ILKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRG------KLGS-------------------SDDVLIKYKDEDGD 54 (81)
T ss_pred eEEEEeCCe--EEEEeccCccccHHHHHHHHHHHhcc------ccCC-------------------cccEEEEEECCCCC
Confidence 367777776 4665554433 999999999999973 1111 13799999999999
Q ss_pred eEEccCc---chhHHhhhceeeEEe
Q 022618 253 WMLVGDV---PWEMFTDSCRRLRIM 274 (294)
Q Consensus 253 wMLVGDV---PWemFv~svKRLrIm 274 (294)
+.-+.+- -|-.-+...+||+|.
T Consensus 55 lVTIts~~dL~~A~~~~~~~~l~~~ 79 (81)
T cd06401 55 LITIFDSSDLSFAIQCSRILKLTLF 79 (81)
T ss_pred EEEeccHHHHHHHHhcCcceEEEEe
Confidence 9999874 444334444555553
No 9
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=95.52 E-value=0.033 Score=44.63 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=49.1
Q ss_pred EEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeE
Q 022618 175 VKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM 254 (294)
Q Consensus 175 VKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwM 254 (294)
||..-|..=-=-.+|.....+|+++++-|+.||.... ..|+|-|.|.+||.+
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~----------------------------~~f~i~Y~D~~gDLL 54 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPN----------------------------VDFLIGYTDPHGDLL 54 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCC----------------------------CcEEEEEeCCCCCEe
Confidence 5666666622224455556999999999999997421 269999999999999
Q ss_pred Ecc-CcchhHHhhhcee
Q 022618 255 LVG-DVPWEMFTDSCRR 270 (294)
Q Consensus 255 LVG-DVPWemFv~svKR 270 (294)
-+- |+-+..-+.++++
T Consensus 55 PInNDdNf~kAlssa~p 71 (80)
T cd06403 55 PINNDDNFLKALSSANP 71 (80)
T ss_pred cccCcHHHHHHHHcCCC
Confidence 775 4566666667763
No 10
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=95.09 E-value=0.048 Score=43.98 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=38.0
Q ss_pred cccceeeecC--CCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeEEcc
Q 022618 182 APYLRKVDLK--TYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVG 257 (294)
Q Consensus 182 ~pIGRKVDL~--~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwMLVG 257 (294)
.|-||.+=++ ...||.+|.+++.+-|+.... ....|.|.|.|.||||.|.-
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~-------------------------~~~~~~L~YlDDEgD~VllT 59 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDF-------------------------ETHLYALSYVDDEGDIVLIT 59 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc-------------------------cCCcccEEEEcCCCCEEEEe
Confidence 4567765554 478999999999999974210 01369999999999999874
No 11
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=95.07 E-value=0.1 Score=42.17 Aligned_cols=59 Identities=24% Similarity=0.468 Sum_probs=43.7
Q ss_pred ceEEEEEcC---cccceeeec--CCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEE
Q 022618 173 LYVKVSMDG---APYLRKVDL--KTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYE 247 (294)
Q Consensus 173 ~fVKV~MdG---~pIGRKVDL--~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYE 247 (294)
+.||.+..| .+=-|.+=| ....+|++|...+.++|.. + .+..|+|.|.
T Consensus 1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~--l-------------------------~~~~ftlky~ 53 (87)
T cd06402 1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS--L-------------------------RGKNFQLFWK 53 (87)
T ss_pred CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc--c-------------------------CCCcEEEEEE
Confidence 367888777 333454444 6667999999999999963 1 1247999999
Q ss_pred cCCCCeEEccC
Q 022618 248 DKDGDWMLVGD 258 (294)
Q Consensus 248 DkEGDwMLVGD 258 (294)
|.|||..-+..
T Consensus 54 DeeGDlvtIss 64 (87)
T cd06402 54 DEEGDLVAFSS 64 (87)
T ss_pred CCCCCEEeecC
Confidence 99999987765
No 12
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=94.95 E-value=0.093 Score=42.26 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=51.1
Q ss_pred EEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeE
Q 022618 175 VKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM 254 (294)
Q Consensus 175 VKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwM 254 (294)
-||+-+|. .|++-...-=+|.+|++.|+.+|....+ .+.|||.|.|||..
T Consensus 3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~~----------------------------~~~vtYiDeD~D~I 52 (82)
T cd06397 3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPEI----------------------------KVGVTYIDNDNDEI 52 (82)
T ss_pred EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCChh----------------------------HeEEEEEcCCCCEE
Confidence 48888887 8999988899999999999999984211 38899999999987
Q ss_pred EccC-cchhHHhhhcee
Q 022618 255 LVGD-VPWEMFTDSCRR 270 (294)
Q Consensus 255 LVGD-VPWemFv~svKR 270 (294)
-+-| .=.+.|..-..|
T Consensus 53 Tlssd~eL~d~~~~~~~ 69 (82)
T cd06397 53 TLSSNKELQDFYRLSHR 69 (82)
T ss_pred EecchHHHHHHHHhccc
Confidence 5544 555666554433
No 13
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=94.63 E-value=0.1 Score=42.09 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=43.4
Q ss_pred EEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeE
Q 022618 175 VKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM 254 (294)
Q Consensus 175 VKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwM 254 (294)
||++-.|.-.--.+|. .-+|++|.+.+..||... .+..|++.|.|.|||--
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~---------------------------~~q~ft~kw~DEEGDp~ 53 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFH---------------------------NDQPFTLKWIDEEGDPC 53 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCC---------------------------CCCcEEEEEECCCCCce
Confidence 7999999855555555 778999999999999741 12369999999999987
Q ss_pred EccC
Q 022618 255 LVGD 258 (294)
Q Consensus 255 LVGD 258 (294)
-+..
T Consensus 54 tiSS 57 (83)
T cd06404 54 TISS 57 (83)
T ss_pred eecC
Confidence 6654
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=89.34 E-value=1.4 Score=35.72 Aligned_cols=65 Identities=22% Similarity=0.395 Sum_probs=51.4
Q ss_pred ceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCC
Q 022618 173 LYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGD 252 (294)
Q Consensus 173 ~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGD 252 (294)
.-|||+-.|. .|-|-+..--+|++|...+..+|.. . ..+.|-|.|. ||
T Consensus 3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-----~------------------------~~~~iKykDE-GD 50 (86)
T cd06408 3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-----K------------------------RRLKIKMKDD-GD 50 (86)
T ss_pred EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-----C------------------------CceEEEEEcC-CC
Confidence 4589999898 6777777788899999999999973 1 2589999999 99
Q ss_pred eEEccCc-chhHHhhhce
Q 022618 253 WMLVGDV-PWEMFTDSCR 269 (294)
Q Consensus 253 wMLVGDV-PWemFv~svK 269 (294)
..-++|- =-++-+.++|
T Consensus 51 ~iti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 51 MITMGDQDDLDMAIDTAR 68 (86)
T ss_pred CccccCHHHHHHHHHHHH
Confidence 9988873 4455555555
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=67.05 E-value=9 Score=31.63 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=30.3
Q ss_pred eecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeE
Q 022618 188 VDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM 254 (294)
Q Consensus 188 VDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwM 254 (294)
=||+..-+|.+|..-..+-|..+ +-.|-|.|.|||..
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~~------------------------------dIaLNYrD~EGDLI 58 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQRE------------------------------DIALNYRDAEGDLI 58 (92)
T ss_pred cccccCccHHHHHHHHHHHhchh------------------------------heeeeeecCCCCEE
Confidence 37888899999999888888643 34588999999975
No 16
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=49.10 E-value=14 Score=27.04 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=14.4
Q ss_pred EEEEEcCCCCeEEccCc
Q 022618 243 VLTYEDKDGDWMLVGDV 259 (294)
Q Consensus 243 vLtYEDkEGDwMLVGDV 259 (294)
-+.|.|.||+++++|+.
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 37899999999999974
No 17
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=47.60 E-value=6.7 Score=34.98 Aligned_cols=11 Identities=64% Similarity=0.936 Sum_probs=7.5
Q ss_pred ccccCCCCCCC
Q 022618 12 ELRLGLPGSES 22 (294)
Q Consensus 12 ELRLGLPGs~s 22 (294)
.=|||.|||.|
T Consensus 99 RGRLGvPGSGS 109 (154)
T PF11576_consen 99 RGRLGVPGSGS 109 (154)
T ss_dssp EEE-SSTTS-E
T ss_pred cccccCCCCcc
Confidence 34999999987
No 18
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=43.50 E-value=1.2e+02 Score=24.51 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=48.8
Q ss_pred ceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCC-
Q 022618 173 LYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDG- 251 (294)
Q Consensus 173 ~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEG- 251 (294)
.-|||+-.+ .=.|-...=-+|.+|...|.+-+.. ++.+-+|.|.|.+.
T Consensus 3 ~vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl----------------------------~~e~i~LsYkde~s~ 51 (80)
T cd06406 3 YVVKVHFKY---TVAIQVARGLSYATLLQKISSKLEL----------------------------PAEHITLSYKSEASG 51 (80)
T ss_pred eEEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCC----------------------------CchhcEEEeccCCCC
Confidence 358999997 3345666677899999999987752 01246789998874
Q ss_pred CeEEccCcchhHHhhhce
Q 022618 252 DWMLVGDVPWEMFTDSCR 269 (294)
Q Consensus 252 DwMLVGDVPWemFv~svK 269 (294)
+...++|-=|+.-.+.|+
T Consensus 52 ~~v~l~d~dle~aws~~~ 69 (80)
T cd06406 52 EDVILSDTNMEDVWSQAK 69 (80)
T ss_pred CccCcChHHHHHHHHhhc
Confidence 554559999998888887
No 19
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=40.90 E-value=48 Score=27.25 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=34.8
Q ss_pred cCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeEEcc
Q 022618 180 DGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVG 257 (294)
Q Consensus 180 dG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwMLVG 257 (294)
+|..+--.||...+=+|.++..++.+....-|. -.+-|||.|||..-|-
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT~-----------------------------tAFeYEDE~gDRITVR 57 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPEATT-----------------------------TAFEYEDEDGDRITVR 57 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhcccccc-----------------------------cceeeccccCCeeEec
Confidence 344466677777778899998888876653221 2256999999988774
No 20
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=34.80 E-value=16 Score=33.30 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=31.3
Q ss_pred hhhhccCCCCceEEEEEcCCCCeEEccCcchhHHhhhceeeE
Q 022618 231 SRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLR 272 (294)
Q Consensus 231 ~~l~dll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLr 272 (294)
.-|.+.|.-.+|..-|.+. .|..|.||+.+++.++||.
T Consensus 89 d~L~~~L~~~G~~ae~~~~----~i~T~a~~eev~~l~~~Ls 126 (190)
T PF09840_consen 89 DLLVDALKLLGYKAEYRED----VIKTDAPLEEVVELAERLS 126 (190)
T ss_pred HHHHHHHHhCCCeeEEeCC----eEEecCCHHHHHHHHHHHH
Confidence 3466777767899999765 8899999999999999873
No 21
>PF04809 HupH_C: HupH hydrogenase expression protein, C-terminal conserved region; InterPro: IPR006894 This entry represents the C-terminal conserved domain found in bacterial hydrogenase expression proteins (HupH), which are necessary for hydrogenase synthesis. The precise function of HupH is unknown [].; PDB: 3SB1_A.
Probab=29.91 E-value=41 Score=28.50 Aligned_cols=32 Identities=47% Similarity=0.677 Sum_probs=23.7
Q ss_pred ceEEEEEcCCC----CeEEccCcch------hHHhhhceeeE
Q 022618 241 EYVLTYEDKDG----DWMLVGDVPW------EMFTDSCRRLR 272 (294)
Q Consensus 241 eyvLtYEDkEG----DwMLVGDVPW------emFv~svKRLr 272 (294)
=|.+.|.|.+| |.+-||++|= +.|..++.||+
T Consensus 72 VWrV~~~n~~~~~i~d~iEV~~vP~~v~aa~eD~~ds~~rL~ 113 (120)
T PF04809_consen 72 VWRVRYFNSDGRLILDTIEVGDVPEVVRAAPEDLADSAARLR 113 (120)
T ss_dssp EEEEEEE-TTS-EEEEEEEESSS-GGGS--HHHHHHHHHHH-
T ss_pred EEEEEEECCCCCEeeeeEEEeCCcHHHhccHhhHHHHHHHHh
Confidence 59999999986 6778999996 46777877775
No 22
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.44 E-value=26 Score=31.04 Aligned_cols=12 Identities=58% Similarity=0.791 Sum_probs=9.7
Q ss_pred ccccCCCCCCCC
Q 022618 12 ELRLGLPGSESP 23 (294)
Q Consensus 12 ELRLGLPGs~sp 23 (294)
.=|||.|||.|=
T Consensus 100 RGRLGvPGSGsm 111 (156)
T COG4019 100 RGRLGVPGSGSM 111 (156)
T ss_pred eccccCCCCCcE
Confidence 349999999873
No 23
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.79 E-value=25 Score=32.74 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=32.1
Q ss_pred chhhhhccCCCCceEEEEEcCCCCeEEccCcchhHHhhhceeeE
Q 022618 229 SESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLR 272 (294)
Q Consensus 229 ~e~~l~dll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLr 272 (294)
+-.-|.|.|..-+|.+-|.+ || |=-+.||..|++.|++|.
T Consensus 90 p~~vl~daLk~~GyrVevr~---~~-l~T~ap~~ev~E~vreLs 129 (204)
T COG3286 90 PPDVLIDALKLLGYRVEVRG---GE-LKTNAPWSEVVELVRELS 129 (204)
T ss_pred CHHHHHHHHHhCCceEEeeC---ce-eecCCCHHHHHHHHHHHH
Confidence 33457788888899999864 44 889999999999999863
No 24
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.62 E-value=1.1e+02 Score=30.20 Aligned_cols=74 Identities=26% Similarity=0.388 Sum_probs=51.1
Q ss_pred cCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEc--CCCCeEEcc
Q 022618 180 DGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYED--KDGDWMLVG 257 (294)
Q Consensus 180 dG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYED--kEGDwMLVG 257 (294)
+|.|.|| +..|++-+||++.+..-|.... .|- .-+|.-+ -|=+.||-|
T Consensus 62 HGSptg~---Ie~fsnv~ELY~kIAe~F~Is~-------------~dI--------------lfcTlNshKvDM~~llgG 111 (334)
T KOG3938|consen 62 HGSPTGR---IEGFSNVRELYQKIAEAFDISP-------------DDI--------------LFCTLNSHKVDMKRLLGG 111 (334)
T ss_pred cCCccce---ecccccHHHHHHHHHHHhcCCc-------------cce--------------EEEecCCCcccHHHHhcC
Confidence 5667887 4678999999999999886421 010 0112112 344568888
Q ss_pred CcchhHHhh-----hceeeEEecCCcccCCC
Q 022618 258 DVPWEMFTD-----SCRRLRIMKSSDAIGLA 283 (294)
Q Consensus 258 DVPWemFv~-----svKRLrImk~Sea~gla 283 (294)
-.-.+.|+= -.|-++|+|+.++.||.
T Consensus 112 qigleDfiFAHvkGq~kEv~v~KsedalGlT 142 (334)
T KOG3938|consen 112 QIGLEDFIFAHVKGQAKEVEVVKSEDALGLT 142 (334)
T ss_pred ccChhhhhhhhhcCcceeEEEEecccccceE
Confidence 888888774 56779999999998874
No 25
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=21.21 E-value=1e+02 Score=30.60 Aligned_cols=78 Identities=28% Similarity=0.392 Sum_probs=54.1
Q ss_pred cceEEEEEcCcccceeeecC--CCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcC
Q 022618 172 CLYVKVSMDGAPYLRKVDLK--TYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDK 249 (294)
Q Consensus 172 ~~fVKV~MdG~pIGRKVDL~--~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDk 249 (294)
.+-||-..|-. =|..-|. .-.+|++++.-|+++-... +.++.|-|.|.
T Consensus 18 ~veVKSKFdaE--fRRfsl~r~~~~~f~~F~~Lv~~~H~i~----------------------------nvdvllgY~d~ 67 (358)
T KOG3606|consen 18 TVEVKSKFDAE--FRRFSLPRHSASSFDEFYSLVEHLHHIP----------------------------NVDVLLGYADT 67 (358)
T ss_pred eEEeeccccch--hheecccccCcccHHHHHHHHHHHhcCC----------------------------CceEEEEEecC
Confidence 34555555544 4544444 4468999999999877531 23688999999
Q ss_pred CCCeEEcc-CcchhHHhhhce---eeEEecCCcc
Q 022618 250 DGDWMLVG-DVPWEMFTDSCR---RLRIMKSSDA 279 (294)
Q Consensus 250 EGDwMLVG-DVPWemFv~svK---RLrImk~Sea 279 (294)
-||.+-+- |.-+.--+.+++ ||-|-|..|+
T Consensus 68 hgDLLPinNDDn~~ka~~sa~PlLR~~iQkr~ea 101 (358)
T KOG3606|consen 68 HGDLLPINNDDNLHKALSSARPLLRLLIQKREEA 101 (358)
T ss_pred CCceecccCchhHHHHhhccCchhhhhhhhhhhh
Confidence 99999764 566776777777 6777777665
Done!