Query 022618
Match_columns 294
No_of_seqs 197 out of 553
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 08:23:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 96.6 0.0069 2.4E-07 47.8 7.8 72 170-269 4-76 (86)
2 1vd2_A Protein kinase C, IOTA 95.5 0.038 1.3E-06 43.5 7.0 58 171-257 5-62 (89)
3 2kkc_A Sequestosome-1; P62, PB 95.2 0.035 1.2E-06 44.7 6.0 71 172-269 5-91 (102)
4 2ktr_A Sequestosome-1; autopha 94.4 0.084 2.9E-06 43.6 6.4 72 171-269 19-106 (117)
5 1q1o_A Cell division control p 92.7 0.38 1.3E-05 38.7 7.4 76 171-269 4-86 (98)
6 1pqs_A Cell division control p 82.7 1.3 4.6E-05 33.8 4.1 57 190-269 8-65 (77)
7 1oey_J P40-PHOX, neutrophil cy 81.8 1.9 6.6E-05 35.2 4.9 40 189-258 28-67 (107)
8 2bkf_A Zinc-finger protein NBR 76.3 6.3 0.00022 31.0 6.2 55 173-257 7-61 (87)
9 1wj6_A KIAA0049 protein, RSGI 72.0 6.7 0.00023 31.7 5.5 63 173-267 15-77 (101)
10 1oey_A P67-PHOX, neutrophil cy 70.7 16 0.00054 28.3 7.1 70 173-273 6-78 (83)
11 3o27_A Putative uncharacterize 59.4 3.6 0.00012 31.2 1.5 22 235-256 38-59 (68)
12 1e8p_A Endoglucanase, dockerin 52.1 4.3 0.00015 28.7 0.8 13 243-255 20-32 (46)
13 3brc_A Conserved protein of un 49.0 4.2 0.00014 35.1 0.4 11 12-22 100-110 (156)
14 2npt_A Dual specificity mitoge 27.3 99 0.0034 25.0 5.1 56 173-257 15-71 (106)
15 2j4m_A Endoglucanase 45A; dock 26.5 13 0.00046 29.9 -0.1 13 243-255 21-33 (100)
16 3c8c_A Methyl-accepting chemot 24.4 26 0.0009 27.9 1.3 35 238-272 203-238 (240)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.64 E-value=0.0069 Score=47.76 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=54.2
Q ss_pred CCcceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcC
Q 022618 170 LGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDK 249 (294)
Q Consensus 170 ~~~~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDk 249 (294)
.+.+-||..-|..--=-.+|-....+|++|..-|+++|... ...|++.|.|.
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~----------------------------~~~f~i~Y~D~ 55 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP----------------------------GLDVLLGYTDA 55 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT----------------------------TCCCEEEEECT
T ss_pred CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC----------------------------CCCEEEEEECC
Confidence 45678899999883333455567789999999999999731 12699999999
Q ss_pred CCCeEEccC-cchhHHhhhce
Q 022618 250 DGDWMLVGD-VPWEMFTDSCR 269 (294)
Q Consensus 250 EGDwMLVGD-VPWemFv~svK 269 (294)
|||++-+-+ .=..+-+.++|
T Consensus 56 dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 56 HGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp TSCEEECCSHHHHHHHTTSSS
T ss_pred CCCEeeecCHHHHHHHHHhCC
Confidence 999998765 45566666777
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.49 E-value=0.038 Score=43.50 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=44.6
Q ss_pred CcceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCC
Q 022618 171 GCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKD 250 (294)
Q Consensus 171 ~~~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkE 250 (294)
+.+=|||+-.|.- |.+.+...-+|++|...|..+|... .+..+++.|.|.|
T Consensus 5 ~~vkvK~~~~gdi--~~~~v~~~i~~~~L~~kv~~~~~~~---------------------------~~~~f~lky~DEe 55 (89)
T 1vd2_A 5 SQVRVKAYYRGDI--MITHFEPSISFEGLCNEVRDMCSFD---------------------------NEQLFTMKWIDEE 55 (89)
T ss_dssp SCEEEEEESSSCE--EEEEECTTCCHHHHHHHHHHHTTCC---------------------------SSCCEEEEECCSS
T ss_pred CeEEEEEEeCCeE--EEEECCCCCCHHHHHHHHHHHhCCC---------------------------CCCeEEEEEECCC
Confidence 4578899999984 4555555679999999999999731 1236999999999
Q ss_pred CCeEEcc
Q 022618 251 GDWMLVG 257 (294)
Q Consensus 251 GDwMLVG 257 (294)
||+.-+-
T Consensus 56 GD~itis 62 (89)
T 1vd2_A 56 GDPCTVS 62 (89)
T ss_dssp SCCEECC
T ss_pred CCccccc
Confidence 9987654
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.18 E-value=0.035 Score=44.72 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=49.0
Q ss_pred cceEEEEEcCc----ccceeeecCC-----------CCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhcc
Q 022618 172 CLYVKVSMDGA----PYLRKVDLKT-----------YSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDL 236 (294)
Q Consensus 172 ~~fVKV~MdG~----pIGRKVDL~~-----------~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dl 236 (294)
++-||++..|. .=-|.+=|.. ..+|++|...++++|...
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l-------------------------- 58 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL-------------------------- 58 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS--------------------------
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc--------------------------
Confidence 56789998762 2345555532 248999999999999731
Q ss_pred CCCCceEEEEEcCCCCeEEccCc-chhHHhhhce
Q 022618 237 LHGSEYVLTYEDKDGDWMLVGDV-PWEMFTDSCR 269 (294)
Q Consensus 237 l~gseyvLtYEDkEGDwMLVGDV-PWemFv~svK 269 (294)
.+..|.|.|.|.|||+.-+-+. =-.+-+.+++
T Consensus 59 -~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 59 -RPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp -CSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred -CCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence 1347999999999999877663 3334444433
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=94.39 E-value=0.084 Score=43.63 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=49.4
Q ss_pred CcceEEEEEcCc----ccceeeecC-----------CCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhc
Q 022618 171 GCLYVKVSMDGA----PYLRKVDLK-----------TYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMD 235 (294)
Q Consensus 171 ~~~fVKV~MdG~----pIGRKVDL~-----------~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~d 235 (294)
.++-||++..|. .=-|++=|. .-.+|++|...++++|...
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L------------------------- 73 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL------------------------- 73 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-------------------------
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-------------------------
Confidence 468999999752 224555553 1359999999999999631
Q ss_pred cCCCCceEEEEEcCCCCeEEccCc-chhHHhhhce
Q 022618 236 LLHGSEYVLTYEDKDGDWMLVGDV-PWEMFTDSCR 269 (294)
Q Consensus 236 ll~gseyvLtYEDkEGDwMLVGDV-PWemFv~svK 269 (294)
.+..|.|.|.|.|||+.-+-.. =..+-+.+++
T Consensus 74 --~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 74 --RPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp --CSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred --CCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence 1347999999999998877653 3344444443
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=92.74 E-value=0.38 Score=38.65 Aligned_cols=76 Identities=17% Similarity=0.386 Sum_probs=55.1
Q ss_pred CcceEEEEEcCcc----c--ceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEE
Q 022618 171 GCLYVKVSMDGAP----Y--LRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVL 244 (294)
Q Consensus 171 ~~~fVKV~MdG~p----I--GRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvL 244 (294)
++.-|||+-+... + .|.|=+..--+|++|...+.+-|..+. +. + . .....|
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~---~~---------~-i----------~~~~kl 60 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH---NN---------N-I----------SPITKI 60 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC---SS---------C-C----------CCCCCE
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc---cc---------c-c----------cceeEE
Confidence 4577888877421 2 366767788899999999999997421 00 0 0 014679
Q ss_pred EEEcCCCCeEEccC-cchhHHhhhce
Q 022618 245 TYEDKDGDWMLVGD-VPWEMFTDSCR 269 (294)
Q Consensus 245 tYEDkEGDwMLVGD-VPWemFv~svK 269 (294)
-|+|.|||+...++ .=|+|-+.+++
T Consensus 61 kYkDEdGD~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 61 KYQDEDGDFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp EEECSSSCEEEECSHHHHHHHHHHHH
T ss_pred EEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 99999999988876 68999988874
No 6
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=82.70 E-value=1.3 Score=33.76 Aligned_cols=57 Identities=21% Similarity=0.438 Sum_probs=41.2
Q ss_pred cCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeEEccC-cchhHHhhhc
Q 022618 190 LKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGD-VPWEMFTDSC 268 (294)
Q Consensus 190 L~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwMLVGD-VPWemFv~sv 268 (294)
...--+|++|...+.+-|..+ .+.+ . .....|-|+|.|||+...++ .=|+|-+.++
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~-------~~~~------~----------~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT-------HNNN------I----------SPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT-------TSSC------S----------CSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHccc-------cccc------c----------cceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 445568999999999988632 0000 0 12567999999999987765 6899998887
Q ss_pred e
Q 022618 269 R 269 (294)
Q Consensus 269 K 269 (294)
|
T Consensus 65 ~ 65 (77)
T 1pqs_A 65 A 65 (77)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=81.80 E-value=1.9 Score=35.19 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=33.0
Q ss_pred ecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeEEccC
Q 022618 189 DLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGD 258 (294)
Q Consensus 189 DL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwMLVGD 258 (294)
||+..-.|.+|..-..+-|..+ +-.|-|.|.|||+.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~------------------------------DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE------------------------------DIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS------------------------------SEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhccc------------------------------ceeeeeecCCCCEEEEcc
Confidence 6788889999999999999742 456899999999976544
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=76.26 E-value=6.3 Score=31.02 Aligned_cols=55 Identities=11% Similarity=0.203 Sum_probs=40.8
Q ss_pred ceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCC
Q 022618 173 LYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGD 252 (294)
Q Consensus 173 ~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGD 252 (294)
.-+||.--|...=--|.-..--++++|-..+..+|+. +.++|+|-|.|||
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L------------------------------~~~~ikY~DEenD 56 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------------------NTIQIKYLDEENE 56 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC------------------------------SSEEEEEECTTSC
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC------------------------------CceEEEEEcCCCC
Confidence 4578899998433335334477899999999998862 2589999999999
Q ss_pred eEEcc
Q 022618 253 WMLVG 257 (294)
Q Consensus 253 wMLVG 257 (294)
-.-|=
T Consensus 57 ~v~i~ 61 (87)
T 2bkf_A 57 EVSIN 61 (87)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87653
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=71.99 E-value=6.7 Score=31.69 Aligned_cols=63 Identities=10% Similarity=0.198 Sum_probs=45.5
Q ss_pred ceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCC
Q 022618 173 LYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGD 252 (294)
Q Consensus 173 ~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGD 252 (294)
.-+||.--|...=--|.-..--++++|-..|..+|.. +.++|.|.|.|||
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L------------------------------~~~~IkY~DEenD 64 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------------------NTIQIKYLDEENE 64 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCC------------------------------SSBCCEEECTTSC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCC------------------------------CceEEEEecCCCC
Confidence 4679999998433346444477899999999999962 2478999999999
Q ss_pred eEEccCcchhHHhhh
Q 022618 253 WMLVGDVPWEMFTDS 267 (294)
Q Consensus 253 wMLVGDVPWemFv~s 267 (294)
-.-|=- +.+|-+.
T Consensus 65 ~V~i~S--q~E~eEA 77 (101)
T 1wj6_A 65 EVSINS--QGEYEEA 77 (101)
T ss_dssp EECCCS--HHHHHHH
T ss_pred EEEEec--HHHHHHH
Confidence 887643 4444443
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=70.69 E-value=16 Score=28.28 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=53.5
Q ss_pred ceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEc-CCC
Q 022618 173 LYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYED-KDG 251 (294)
Q Consensus 173 ~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYED-kEG 251 (294)
.=|||+-. +.-.|....=-+|.+|...|.+-+..- + .+-+|-|.| .+|
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~----~------------------------~~~~LsYk~~~s~ 54 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR----L------------------------EHTKLSYRPRDSN 54 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC----G------------------------GGCCEEECCTTCS
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC----c------------------------ceeEEEeeCCCCC
Confidence 45677766 677888888899999999999877520 1 134589999 688
Q ss_pred CeEEccCcchhHHhhhce--eeEE
Q 022618 252 DWMLVGDVPWEMFTDSCR--RLRI 273 (294)
Q Consensus 252 DwMLVGDVPWemFv~svK--RLrI 273 (294)
.|++.+|.=|+.-...++ ||++
T Consensus 55 ~~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 55 ELVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp SCEECCTTTHHHHHTTCBTTEEEE
T ss_pred CeeccChHHHHHHHHhccCCcEEE
Confidence 999999999998887755 4544
No 11
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=59.39 E-value=3.6 Score=31.20 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=18.1
Q ss_pred ccCCCCceEEEEEcCCCCeEEc
Q 022618 235 DLLHGSEYVLTYEDKDGDWMLV 256 (294)
Q Consensus 235 dll~gseyvLtYEDkEGDwMLV 256 (294)
++..|.++.++++|++|+.+|+
T Consensus 38 gIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 38 DIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCTTCCEEEEEEEETTEEEEE
T ss_pred CCCCCCEEEEEEecCCCeEEEE
Confidence 3445668999999999999886
No 12
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=52.14 E-value=4.3 Score=28.69 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.2
Q ss_pred EEEEEcCCCCeEE
Q 022618 243 VLTYEDKDGDWML 255 (294)
Q Consensus 243 vLtYEDkEGDwML 255 (294)
.++|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4899999999954
No 13
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=49.04 E-value=4.2 Score=35.06 Aligned_cols=11 Identities=64% Similarity=0.936 Sum_probs=9.4
Q ss_pred ccccCCCCCCC
Q 022618 12 ELRLGLPGSES 22 (294)
Q Consensus 12 ELRLGLPGs~s 22 (294)
.=|||.|||.|
T Consensus 100 RGRLGvPGSGS 110 (156)
T 3brc_A 100 RGRLGVPGSGS 110 (156)
T ss_dssp EEECSSTTSCE
T ss_pred cccccCCCCcc
Confidence 44999999987
No 14
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=27.28 E-value=99 Score=24.95 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=38.3
Q ss_pred ceEEEEEc-CcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCC
Q 022618 173 LYVKVSMD-GAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDG 251 (294)
Q Consensus 173 ~fVKV~Md-G~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEG 251 (294)
.-+.+... |..+--.||-..+=+|.+|..++.+....-| --.+-|||.+|
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT-----------------------------~TAFeYEDE~g 65 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEAT-----------------------------TTAFEYEDEDG 65 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSC-----------------------------CSEEEEECTTS
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccce-----------------------------eeeeeeccccC
Confidence 44555554 5557777777777799999999888765322 12367999999
Q ss_pred CeEEcc
Q 022618 252 DWMLVG 257 (294)
Q Consensus 252 DwMLVG 257 (294)
|..-|-
T Consensus 66 DRITVR 71 (106)
T 2npt_A 66 DRITVR 71 (106)
T ss_dssp CEEEEC
T ss_pred CeeEEc
Confidence 988774
No 15
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=26.47 E-value=13 Score=29.92 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.1
Q ss_pred EEEEEcCCCCeEE
Q 022618 243 VLTYEDKDGDWML 255 (294)
Q Consensus 243 vLtYEDkEGDwML 255 (294)
.|+|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 5889999999954
No 16
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=24.39 E-value=26 Score=27.90 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=27.8
Q ss_pred CCCceEEEEEcC-CCCeEEccCcchhHHhhhceeeE
Q 022618 238 HGSEYVLTYEDK-DGDWMLVGDVPWEMFTDSCRRLR 272 (294)
Q Consensus 238 ~gseyvLtYEDk-EGDwMLVGDVPWemFv~svKRLr 272 (294)
+|.+|.+.|.-- ..+|.+|.-+|...+...+++|+
T Consensus 203 ~g~~~~~~~~~~~~~~W~vv~~~p~~~~~~~~~~~~ 238 (240)
T 3c8c_A 203 NGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELR 238 (240)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEECHHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCCCCeEEEEEeCHHHHHHHHHHHh
Confidence 456777877654 45999999999999998887764
Done!