BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022619
         (294 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4A9E9|PYRH_MYCHJ Uridylate kinase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934
           / NCTC 10110) GN=pyrH PE=3 SV=1
          Length = 236

 Score = 31.6 bits (70), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 209 MRSKAQRYLA--NLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSD 264
           +R KA +YL   N+L++ G +  PF  +++ A +        I ++G + + G   SD
Sbjct: 113 VREKAMKYLEDNNVLIFVGGTGRPFFTTDSAATLFASEMGANIILVGKNNVNGIFDSD 170


>sp|Q4A7I8|PYRH_MYCH7 Uridylate kinase OS=Mycoplasma hyopneumoniae (strain 7448) GN=pyrH
           PE=3 SV=1
          Length = 236

 Score = 31.6 bits (70), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 209 MRSKAQRYLA--NLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSD 264
           +R KA +YL   N+L++ G +  PF  +++ A +        I ++G + + G   SD
Sbjct: 113 VREKAMKYLEDNNVLIFVGGTGRPFFTTDSAATLFASEMGANIILVGKNNVNGIFDSD 170


>sp|Q600A4|PYRH_MYCH2 Uridylate kinase OS=Mycoplasma hyopneumoniae (strain 232) GN=pyrH
           PE=3 SV=1
          Length = 236

 Score = 31.6 bits (70), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 209 MRSKAQRYLA--NLLLYPGRSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSD 264
           +R KA +YL   N+L++ G +  PF  +++ A +        I ++G + + G   SD
Sbjct: 113 VREKAMKYLEDNNVLIFVGGTGRPFFTTDSAATLFASEMGANIILVGKNNVNGIFDSD 170


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,181,773
Number of Sequences: 539616
Number of extensions: 4102226
Number of successful extensions: 10713
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10713
Number of HSP's gapped (non-prelim): 8
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)