Query 022619
Match_columns 294
No_of_seqs 92 out of 94
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 08:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vhm_A Protein YEBR; structura 97.6 0.0014 4.7E-08 57.2 14.2 81 198-281 88-173 (195)
2 3ksh_A Putative uncharacterize 97.4 0.00043 1.5E-08 59.0 8.4 78 199-279 77-159 (160)
3 3rfb_A Putative uncharacterize 97.3 0.0006 2E-08 58.9 8.1 79 199-280 78-161 (171)
4 2w3g_A DOSS, two component sen 97.3 0.0012 4E-08 50.2 8.7 79 203-281 62-145 (153)
5 3p01_A Two-component response 97.2 0.0019 6.6E-08 52.4 9.8 81 201-281 94-179 (184)
6 3mmh_A FRMSR, methionine-R-sul 97.2 0.0011 3.8E-08 56.2 8.3 77 203-282 83-163 (167)
7 3ci6_A Phosphoenolpyruvate-pro 97.2 0.0076 2.6E-07 45.8 12.3 79 203-281 80-163 (171)
8 3trc_A Phosphoenolpyruvate-pro 97.1 0.01 3.5E-07 45.9 12.3 79 203-281 78-161 (171)
9 3e0y_A Conserved domain protei 97.0 0.0017 5.9E-08 50.6 6.7 79 203-281 83-166 (181)
10 2qyb_A Membrane protein, putat 96.9 0.0014 4.8E-08 52.2 5.5 79 203-282 73-159 (181)
11 1f5m_A GAF; CGMP binding, sign 96.8 0.0049 1.7E-07 52.3 8.6 73 204-279 100-177 (180)
12 2zmf_A CAMP and CAMP-inhibited 96.7 0.013 4.6E-07 46.0 9.9 79 203-281 91-176 (189)
13 3o5y_A Sensor protein; GAF dom 96.7 0.05 1.7E-06 45.1 13.7 79 202-281 59-143 (165)
14 3k2n_A Sigma-54-dependent tran 96.6 0.0021 7E-08 50.7 4.8 79 202-281 77-166 (177)
15 2vjw_A GAF-B, GAF family prote 96.6 0.0042 1.4E-07 50.4 6.5 70 202-281 60-134 (149)
16 3oov_A Methyl-accepting chemot 96.6 0.035 1.2E-06 42.7 11.4 80 202-281 73-162 (169)
17 3hcy_A Putative two-component 96.3 0.0014 4.8E-08 50.8 1.9 78 204-281 56-139 (151)
18 2e4s_A CAMP and CAMP-inhibited 96.1 0.0081 2.8E-07 47.6 5.6 80 202-281 90-176 (189)
19 1mc0_A 3',5'-cyclic nucleotide 94.9 0.05 1.7E-06 48.3 6.8 79 203-281 251-337 (368)
20 3dba_A CONE CGMP-specific 3',5 94.6 0.048 1.7E-06 44.7 5.6 77 203-279 88-171 (180)
21 3ibj_A CGMP-dependent 3',5'-cy 94.1 0.36 1.2E-05 48.1 11.6 80 202-281 250-337 (691)
22 1ykd_A Adenylate cyclase; GAF 93.3 0.092 3.2E-06 47.4 5.2 79 203-281 268-376 (398)
23 2k2n_A Sensor protein, SYB-CPH 93.2 0.18 6.3E-06 40.3 6.3 49 233-281 115-167 (172)
24 4glq_A Methyl-accepting chemot 93.0 0.15 5.1E-06 42.4 5.7 128 148-281 13-154 (171)
25 2lb5_A Sensor histidine kinase 93.0 0.14 4.9E-06 42.0 5.5 49 233-281 145-197 (208)
26 1ykd_A Adenylate cyclase; GAF 91.6 0.086 2.9E-06 47.6 2.7 79 203-281 81-184 (398)
27 1mc0_A 3',5'-cyclic nucleotide 88.8 0.46 1.6E-05 42.0 4.9 76 204-280 82-165 (368)
28 2w1r_A Spovt, stage V sporulat 84.7 3.2 0.00011 33.1 7.4 110 155-279 8-121 (123)
29 3ibj_A CGMP-dependent 3',5'-cy 82.5 0.54 1.8E-05 46.9 2.3 79 202-280 80-165 (691)
30 3cit_A Sensor histidine kinase 82.2 3 0.0001 35.8 6.5 47 235-281 95-147 (160)
31 3bjc_A CGMP-specific 3',5'-cyc 72.4 0.76 2.6E-05 47.6 0.0 79 203-281 413-508 (878)
32 3bjc_A CGMP-specific 3',5'-cyc 58.2 2.1 7.1E-05 44.3 0.0 79 203-281 231-319 (878)
33 4eu0_A PELD; C-DI-GMP, signali 51.3 30 0.001 32.1 6.6 74 203-281 74-152 (298)
34 3nhq_A Bacteriophytochrome; ph 46.6 38 0.0013 33.5 6.9 85 151-251 339-425 (505)
35 3e98_A GAF domain of unknown f 46.4 26 0.00089 31.4 5.2 51 235-285 193-247 (252)
36 4gb7_A 6-aminohexanoate-dimer 43.2 40 0.0014 31.4 6.2 63 156-220 102-164 (422)
37 3im4_C Dual specificity A kina 39.0 9.2 0.00032 26.7 0.8 13 142-154 8-20 (45)
38 1hji_B NUN-protein; bacterioph 28.0 63 0.0022 19.8 3.1 23 258-280 2-24 (26)
39 4b4t_X 26S proteasome regulato 21.7 1.5E+02 0.005 25.2 5.5 57 219-275 65-129 (156)
No 1
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=97.61 E-value=0.0014 Score=57.16 Aligned_cols=81 Identities=17% Similarity=0.271 Sum_probs=69.0
Q ss_pred ccchh-hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHH
Q 022619 198 KLKQG-SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIG 272 (294)
Q Consensus 198 ~~~pG-~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA 272 (294)
.+..| -+|.++.++++++.+.|..-+|+....+ .+++|.||.||-. -|||-+.+..++.||+.|+..++.+|
T Consensus 88 ~i~~GeGi~G~aa~tg~~i~V~Dv~~~p~~~~~~---~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~L~~lA 164 (195)
T 1vhm_A 88 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD---AASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLV 164 (195)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCTTTCTTCCCSC---CCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHH
T ss_pred EecCCCChHHHHHhcCCEEEECCcccCcchhhcC---CCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 34444 3789999999999999999999865543 4789999999954 38999999999999999999999999
Q ss_pred HHHHHHHhh
Q 022619 273 EKLDATLAK 281 (294)
Q Consensus 273 ~KL~~tL~~ 281 (294)
+-+..+++.
T Consensus 165 ~~ia~ale~ 173 (195)
T 1vhm_A 165 AQLEKVLAT 173 (195)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999873
No 2
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=97.44 E-value=0.00043 Score=59.04 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=66.0
Q ss_pred cchh-hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEec--CC--CeEEEEecCCCcccChhhHHHHHHHHH
Q 022619 199 LKQG-SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPL--GD--KGIAIIGGDTIRGFTTSDQSWIAFIGE 273 (294)
Q Consensus 199 ~~pG-~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPi--g~--~Gvlvlgs~s~R~FT~kDe~WI~~iA~ 273 (294)
+..| -+|.++.++++++.+.|..-+|+....+ +.++|.||.|| ++ =|||-+.+..++.|++.|+.+++.+|+
T Consensus 77 i~~GeGv~G~aa~~~~~i~V~Dv~~~p~~i~~~---~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~ 153 (160)
T 3ksh_A 77 IPIGKGVCGTAVSERRTQVVADVHQFKGHIACD---ANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVK 153 (160)
T ss_dssp EETTSHHHHHHHHHTSCEEESCGGGSTTCCGGG---TTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHhhCCEEEECCcccCccccccC---cccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 4443 4799999999999999999999854432 46899999999 33 389999999999999999999999999
Q ss_pred HHHHHH
Q 022619 274 KLDATL 279 (294)
Q Consensus 274 KL~~tL 279 (294)
-+...+
T Consensus 154 ~la~~~ 159 (160)
T 3ksh_A 154 IIEKQL 159 (160)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988765
No 3
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=97.34 E-value=0.0006 Score=58.89 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=67.1
Q ss_pred cchh-hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEec--CC--CeEEEEecCCCcccChhhHHHHHHHHH
Q 022619 199 LKQG-SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPL--GD--KGIAIIGGDTIRGFTTSDQSWIAFIGE 273 (294)
Q Consensus 199 ~~pG-~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPi--g~--~Gvlvlgs~s~R~FT~kDe~WI~~iA~ 273 (294)
+..| -||.++.++++++.+.|..-+|+....+ +.++|.||.|| ++ =|||-+.+..++.||+.|+.+++.+|+
T Consensus 78 i~~GeGv~G~va~tg~~i~V~Dv~~~p~~i~~~---~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~ 154 (171)
T 3rfb_A 78 IALGKGVCGEAAHFQETVIVGDVTTYLNYISCD---SLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVA 154 (171)
T ss_dssp EETTSHHHHHHHHTTSCEEESCTTSCSSCCCSC---TTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHhhCCEEEECCcccCccccccC---cccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 4443 4799999999999999999999865433 47899999999 33 389999999999999999999999999
Q ss_pred HHHHHHh
Q 022619 274 KLDATLA 280 (294)
Q Consensus 274 KL~~tL~ 280 (294)
-+..++.
T Consensus 155 ~la~~~~ 161 (171)
T 3rfb_A 155 ILLEKTT 161 (171)
T ss_dssp HHHHSCB
T ss_pred HHHHHhc
Confidence 9988763
No 4
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=97.32 E-value=0.0012 Score=50.24 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=64.7
Q ss_pred hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCC----CeEEEEecCCC-cccChhhHHHHHHHHHHHHH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGD----KGIAIIGGDTI-RGFTTSDQSWIAFIGEKLDA 277 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~----~Gvlvlgs~s~-R~FT~kDe~WI~~iA~KL~~ 277 (294)
.++.+++++++++++.|..--|....+.....+.+++++.||-. -|+|.+.+..+ |.||+.|...++.+|+.+..
T Consensus 62 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ 141 (153)
T 2w3g_A 62 GVIGLLIEDPKPLRLDDVSAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGI 141 (153)
T ss_dssp THHHHHHHSCSCEEESSGGGSTTCCCCCTTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCcEEecCcccCchhcCCCCcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46889999999999998765544333333557889999999943 47999999888 89999999999999999998
Q ss_pred HHhh
Q 022619 278 TLAK 281 (294)
Q Consensus 278 tL~~ 281 (294)
.++.
T Consensus 142 ai~~ 145 (153)
T 2w3g_A 142 AVAN 145 (153)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 5
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=97.24 E-value=0.0019 Score=52.38 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=64.2
Q ss_pred hhhHHHHHhhccCceecccccccCCCCCCC-CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHH
Q 022619 201 QGSVYLGVMRSKAQRYLANLLLYPGRSELP-FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKL 275 (294)
Q Consensus 201 pG~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL 275 (294)
..+++.+++++++++.+.|..--|.-.+-+ +-..+.+++++.||-. -|+|.+.+..+|.||+.|...++.+|+.+
T Consensus 94 ~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~q~ 173 (184)
T 3p01_A 94 QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELTLIHLSAQLV 173 (184)
T ss_dssp GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHHHHHHHHHHH
Confidence 367889999999999988876544111111 1223899999999943 58999999999999999999999999999
Q ss_pred HHHHhh
Q 022619 276 DATLAK 281 (294)
Q Consensus 276 ~~tL~~ 281 (294)
..+++.
T Consensus 174 aiAi~n 179 (184)
T 3p01_A 174 AIALTS 179 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 6
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=97.21 E-value=0.0011 Score=56.24 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=66.5
Q ss_pred hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHHH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDAT 278 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~t 278 (294)
-+|.++.++++++.+.|..-+|+....+ .+++|.+|.||-. =|||-+.+..++.||+.|+..++.+|+-+..+
T Consensus 83 Gi~G~v~~~g~~~~v~Dv~~~p~~~~~~---~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~~la~~ 159 (167)
T 3mmh_A 83 GVCGQAWAKGGTVVVGDVDAHPDHIACS---SLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLGELAKILEKR 159 (167)
T ss_dssp HHHHHHHHHTSCEEESCGGGSTTCCCSS---TTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhCCcEEEECCcccCcchhhcC---ccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999854433 5799999999943 47999999999999999999999999999988
Q ss_pred Hhhc
Q 022619 279 LAKY 282 (294)
Q Consensus 279 L~~~ 282 (294)
+.-+
T Consensus 160 i~~~ 163 (167)
T 3mmh_A 160 FEAS 163 (167)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7643
No 7
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=97.20 E-value=0.0076 Score=45.85 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=61.5
Q ss_pred hHHHHHhhccCceecccccccCCCCCCC-CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSELP-FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDA 277 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~ 277 (294)
.++.++++++++++..|..--|....+. +-..+..++++.||-. -|+|.+++..++.||+.|...++.+|+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~ 159 (171)
T 3ci6_A 80 GLVGLVGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQPQDFSEAAESFLVTLCAQLSG 159 (171)
T ss_dssp HHHHHHHHHTSCEEESSGGGSTTC---------CCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHH
T ss_pred CeehhhhccCceEEecCCCcCcchhccccccccccceEEEEeEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4788999999999999876555433332 2556789999999943 4799999999999999999999999999998
Q ss_pred HHhh
Q 022619 278 TLAK 281 (294)
Q Consensus 278 tL~~ 281 (294)
.++.
T Consensus 160 al~~ 163 (171)
T 3ci6_A 160 VIAH 163 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 8
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=97.11 E-value=0.01 Score=45.90 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=64.2
Q ss_pred hHHHHHhhccCceecccccccCCCCCCC-CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSELP-FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDA 277 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~ 277 (294)
.++.++.++++++++.|..--|....+. .-..+..++++.||-. -|++.+++..++.||+.|...++.+|+.+..
T Consensus 78 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~~~f~~~d~~~l~~la~~~a~ 157 (171)
T 3trc_A 78 GLIGLVGEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQLESHHFAEEEEAFCVTLAIHLAA 157 (171)
T ss_dssp HHHHHHHHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEESSSCCCCHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHhcCCeEEeCCCCCCCcccccccCCcccccEEEEEeEEECCEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHH
Confidence 5688899999999999886544333222 1236889999999943 5799999999999999999999999999999
Q ss_pred HHhh
Q 022619 278 TLAK 281 (294)
Q Consensus 278 tL~~ 281 (294)
.++.
T Consensus 158 ai~~ 161 (171)
T 3trc_A 158 EIAH 161 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 9
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=96.96 E-value=0.0017 Score=50.64 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=61.1
Q ss_pred hHHHHHhhccCceecccccccCCCCCCC-CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSELP-FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDA 277 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~ 277 (294)
.+|.+++++++++++.|..--|.....+ ....+.+++++.||-. -|+|.+.+..++.||+.|...++.+|+.+..
T Consensus 83 ~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~~l~~la~~~a~ 162 (181)
T 3e0y_A 83 GITGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVSIIANLILT 162 (181)
T ss_dssp SSHHHHHHHCCCEEEEEECCCCCC---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHH
T ss_pred CeeeehhhcCCeEEecCcccCccccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3678899999999999886544432221 2235789999999954 4799999999999999999999999999998
Q ss_pred HHhh
Q 022619 278 TLAK 281 (294)
Q Consensus 278 tL~~ 281 (294)
+++.
T Consensus 163 al~~ 166 (181)
T 3e0y_A 163 AIKL 166 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 10
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=96.87 E-value=0.0014 Score=52.16 Aligned_cols=79 Identities=8% Similarity=0.069 Sum_probs=64.8
Q ss_pred hHHHHHhhccCceecccccccCCCCCC--CCCCCCCCeeEEEecC--CC---eEEEEec-CCCcccChhhHHHHHHHHHH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSEL--PFLPSNTQAVILQPLG--DK---GIAIIGG-DTIRGFTTSDQSWIAFIGEK 274 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef--~~LP~ntqsVlvQPig--~~---Gvlvlgs-~s~R~FT~kDe~WI~~iA~K 274 (294)
.+|.++++++++++..|....|. ..+ .+...|..++++.||. ++ |+|.+.+ ..++.||+.|...++.+|+-
T Consensus 73 ~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~la~~ 151 (181)
T 2qyb_A 73 TYIGEAFLSNRLQFVNDTQYMTK-PLTRELMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLESLAGQ 151 (181)
T ss_dssp SHHHHHHHHTSCEEESCGGGCSC-HHHHHHHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHHHHHH
T ss_pred CchhhhhhcCCCEEecChhcCCc-hhhHHHHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999876653 111 1224579999999983 44 8999999 89999999999999999999
Q ss_pred HHHHHhhc
Q 022619 275 LDATLAKY 282 (294)
Q Consensus 275 L~~tL~~~ 282 (294)
+...+++.
T Consensus 152 ~a~al~~a 159 (181)
T 2qyb_A 152 LAQAVKIV 159 (181)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998764
No 11
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=96.79 E-value=0.0049 Score=52.31 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=63.8
Q ss_pred HHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCC-C----eEEEEecCCCcccChhhHHHHHHHHHHHHHH
Q 022619 204 VYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGD-K----GIAIIGGDTIRGFTTSDQSWIAFIGEKLDAT 278 (294)
Q Consensus 204 I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~-~----Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~t 278 (294)
+|.++.++++.+.+.|..-+|+... ...+++|.+|.||-. + |||-+.+..++.||+.|+..++.+|+-+..+
T Consensus 100 i~G~aa~~g~~v~v~Dv~~dp~~~~---~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~L~~la~~~a~~ 176 (180)
T 1f5m_A 100 VCGTAASTKETQIVPDVNKYPGHIA---CDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINKS 176 (180)
T ss_dssp HHHHHHHHTSCEEESCGGGSTTCCC---SSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhcCCEEEeCCcccCccccc---cCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHHHHHHHHHHHHh
Confidence 6899999999999999998887543 346899999999965 2 8999999999999999999999999998876
Q ss_pred H
Q 022619 279 L 279 (294)
Q Consensus 279 L 279 (294)
+
T Consensus 177 ~ 177 (180)
T 1f5m_A 177 C 177 (180)
T ss_dssp C
T ss_pred c
Confidence 5
No 12
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=96.69 E-value=0.013 Score=45.98 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=60.8
Q ss_pred hHHHHHhhccCceecccccccCCCCCC--CCCCCCCCeeEEEecCC----CeEEEE-ecCCCcccChhhHHHHHHHHHHH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSEL--PFLPSNTQAVILQPLGD----KGIAII-GGDTIRGFTTSDQSWIAFIGEKL 275 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef--~~LP~ntqsVlvQPig~----~Gvlvl-gs~s~R~FT~kDe~WI~~iA~KL 275 (294)
.++.++.++++++.+.|...-|..... .....++++++|.|+-. -|++.+ ....+|.||+.|...++.+|+.+
T Consensus 91 ~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~~ll~~lA~q~ 170 (189)
T 2zmf_A 91 GIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENNFKMFAVFC 170 (189)
T ss_dssp HHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHHHHHHHHHHHH
Confidence 467889999999999988765544333 22334688999999844 356644 56778999999999999999999
Q ss_pred HHHHhh
Q 022619 276 DATLAK 281 (294)
Q Consensus 276 ~~tL~~ 281 (294)
...++.
T Consensus 171 a~Ai~n 176 (189)
T 2zmf_A 171 ALALHC 176 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988865
No 13
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=96.66 E-value=0.05 Score=45.12 Aligned_cols=79 Identities=11% Similarity=0.234 Sum_probs=60.9
Q ss_pred hhHHHHHhhccCceecccccccCCCCCC-C-CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHH
Q 022619 202 GSVYLGVMRSKAQRYLANLLLYPGRSEL-P-FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKL 275 (294)
Q Consensus 202 G~I~~r~~~~~~~iyL~nl~lyPGr~Ef-~-~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL 275 (294)
+.++.++.++++.+-+ |..--|.+--. . +...+.+|++|.||-. -|+|.+++..++.||+.|..+++.+|+.+
T Consensus 59 ~s~~~~v~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~ 137 (165)
T 3o5y_A 59 QSLYWSALDQRQTIFR-SLTDTQDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHL 137 (165)
T ss_dssp TCHHHHHHHHTSCEEE-ESCCTTCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCeEEE-cCcccccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999863 43222211101 1 2356899999999943 57999999999999999999999999999
Q ss_pred HHHHhh
Q 022619 276 DATLAK 281 (294)
Q Consensus 276 ~~tL~~ 281 (294)
...++.
T Consensus 138 aiai~n 143 (165)
T 3o5y_A 138 AVSIEN 143 (165)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998875
No 14
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=96.63 E-value=0.0021 Score=50.69 Aligned_cols=79 Identities=10% Similarity=0.149 Sum_probs=61.8
Q ss_pred hhHHHHHhhccCceecccccccCCCCCCC-------CCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHH
Q 022619 202 GSVYLGVMRSKAQRYLANLLLYPGRSELP-------FLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAF 270 (294)
Q Consensus 202 G~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-------~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~ 270 (294)
+.++.+++++++.+.. |..-.+.+.... ....|++++++.||-. -|+|.+.+..++.||+.|...++.
T Consensus 77 ~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~~~f~~~d~~ll~~ 155 (177)
T 3k2n_A 77 GTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVSAEEKLWSDGDKSLLSG 155 (177)
T ss_dssp TSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHH
T ss_pred ccHHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHH
Confidence 4567888888888877 765422222222 3456899999999943 589999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 022619 271 IGEKLDATLAK 281 (294)
Q Consensus 271 iA~KL~~tL~~ 281 (294)
+|+.+..+++.
T Consensus 156 lA~~~a~Ai~n 166 (177)
T 3k2n_A 156 VSSSIAIAVSN 166 (177)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988865
No 15
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=96.59 E-value=0.0042 Score=50.35 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=60.6
Q ss_pred hhHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCC----CeEEEEecC-CCcccChhhHHHHHHHHHHHH
Q 022619 202 GSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGD----KGIAIIGGD-TIRGFTTSDQSWIAFIGEKLD 276 (294)
Q Consensus 202 G~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~----~Gvlvlgs~-s~R~FT~kDe~WI~~iA~KL~ 276 (294)
+.++.+++++++++.+.|..--| ++.++||.||.. -|+|.+... .++.||+.|..-++.+|+...
T Consensus 60 ~g~~g~v~~~g~~v~v~d~~~d~----------~~~s~l~vPL~~~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa 129 (149)
T 2vjw_A 60 DNAIGQAFRDRAPRRLDVLDGPG----------LGGPALVLPLRATDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQAA 129 (149)
T ss_dssp SSHHHHHHHHCCCEEESCCCTTS----------CEEEEEEEEEEETTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhhcCceEEecCcccCC----------CCCeEEEEEEccCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999986544 789999999954 489999988 889999999999999999988
Q ss_pred HHHhh
Q 022619 277 ATLAK 281 (294)
Q Consensus 277 ~tL~~ 281 (294)
..++.
T Consensus 130 ~al~~ 134 (149)
T 2vjw_A 130 VAWQL 134 (149)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 16
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=96.57 E-value=0.035 Score=42.75 Aligned_cols=80 Identities=11% Similarity=0.282 Sum_probs=63.3
Q ss_pred hhHHHHHhhccCceecccccccCCCCC----C-CCCCCCCCeeEEEecCC----CeEEEEecCCC-cccChhhHHHHHHH
Q 022619 202 GSVYLGVMRSKAQRYLANLLLYPGRSE----L-PFLPSNTQAVILQPLGD----KGIAIIGGDTI-RGFTTSDQSWIAFI 271 (294)
Q Consensus 202 G~I~~r~~~~~~~iyL~nl~lyPGr~E----f-~~LP~ntqsVlvQPig~----~Gvlvlgs~s~-R~FT~kDe~WI~~i 271 (294)
..++.+++++++++++.|..-.|.... . ..-..+.+++++.||-. -|+|.+++..+ +.||+.|...++.+
T Consensus 73 ~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~~f~~~d~~~l~~~ 152 (169)
T 3oov_A 73 GGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSRRSLNDTDVDTIKLF 152 (169)
T ss_dssp GHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSSSCCCHHHHHHHHHH
T ss_pred cchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEccccCCCCCHHHHHHHHHH
Confidence 467889999999999998876654321 1 12346889999999944 47899988665 56999999999999
Q ss_pred HHHHHHHHhh
Q 022619 272 GEKLDATLAK 281 (294)
Q Consensus 272 A~KL~~tL~~ 281 (294)
|+.+..+++.
T Consensus 153 a~~~a~ai~n 162 (169)
T 3oov_A 153 ADQASSAIVR 162 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988865
No 17
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=96.30 E-value=0.0014 Score=50.80 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=60.5
Q ss_pred HHHHHhhccCceecccccccCCCCCC--CCCCCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHH
Q 022619 204 VYLGVMRSKAQRYLANLLLYPGRSEL--PFLPSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDA 277 (294)
Q Consensus 204 I~~r~~~~~~~iyL~nl~lyPGr~Ef--~~LP~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~ 277 (294)
+|.+++++++++++.|..--|....+ .....|.+++++.||-. -|++.+....+|.||+.|...++.+|+.+..
T Consensus 56 ~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ 135 (151)
T 3hcy_A 56 PWITGANEPEPIFVENVDDAEFSRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGF 135 (151)
T ss_dssp SCC---CCCCCEEESCGGGSCCCHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHH
T ss_pred chhhhhhcCCcEEEeChhhCcccchhHHHHHhcCchheEEeceEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46778899999999998765532222 23456889999999954 4688899999999999999999999999998
Q ss_pred HHhh
Q 022619 278 TLAK 281 (294)
Q Consensus 278 tL~~ 281 (294)
.+++
T Consensus 136 ai~~ 139 (151)
T 3hcy_A 136 SIQR 139 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 18
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=96.12 E-value=0.0081 Score=47.57 Aligned_cols=80 Identities=11% Similarity=0.110 Sum_probs=63.3
Q ss_pred hhHHHHHhhccCceecccccccCCCCCC--CCCCCCCCeeEEEecCC----CeEEEEecCCCc-ccChhhHHHHHHHHHH
Q 022619 202 GSVYLGVMRSKAQRYLANLLLYPGRSEL--PFLPSNTQAVILQPLGD----KGIAIIGGDTIR-GFTTSDQSWIAFIGEK 274 (294)
Q Consensus 202 G~I~~r~~~~~~~iyL~nl~lyPGr~Ef--~~LP~ntqsVlvQPig~----~Gvlvlgs~s~R-~FT~kDe~WI~~iA~K 274 (294)
..++.++.++++++.+.|..--|..... .+...++.+++|.||-. -|+|.+.+..++ .||+.|...++.+|+-
T Consensus 90 ~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~ 169 (189)
T 2e4s_A 90 KGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENNFKMFAVF 169 (189)
T ss_dssp SHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCEEEecCCCcCcccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999988765432221 12345789999999943 478999988877 9999999999999999
Q ss_pred HHHHHhh
Q 022619 275 LDATLAK 281 (294)
Q Consensus 275 L~~tL~~ 281 (294)
+..+++.
T Consensus 170 ~a~ai~n 176 (189)
T 2e4s_A 170 CALALHC 176 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988865
No 19
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=94.91 E-value=0.05 Score=48.26 Aligned_cols=79 Identities=11% Similarity=0.035 Sum_probs=59.6
Q ss_pred hHHHHHhhccCceecccccccCCCCCC-CC-CCCCCCeeEEEecCCC-----eEEEEecCCCc-ccChhhHHHHHHHHHH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSEL-PF-LPSNTQAVILQPLGDK-----GIAIIGGDTIR-GFTTSDQSWIAFIGEK 274 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef-~~-LP~ntqsVlvQPig~~-----Gvlvlgs~s~R-~FT~kDe~WI~~iA~K 274 (294)
.++.++.++++++.+.|..--|..... +. ..-.++++++.||-.+ |+|.+....++ .||+.|...++.+|+-
T Consensus 251 ~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~ 330 (368)
T 1mc0_A 251 GIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIY 330 (368)
T ss_dssp HHHHHHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHHHHHHHHHHH
T ss_pred ceeeeehhhCCEEEecCcccCcccchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 468889999999999887643321111 00 0113689999999654 89999988885 8999999999999999
Q ss_pred HHHHHhh
Q 022619 275 LDATLAK 281 (294)
Q Consensus 275 L~~tL~~ 281 (294)
+...+++
T Consensus 331 ~a~ai~n 337 (368)
T 1mc0_A 331 CGISIAH 337 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888764
No 20
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=94.63 E-value=0.048 Score=44.68 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=58.0
Q ss_pred hHHHHHhhccCceecccccccCCCCC-CCC-CCCCCCeeEEEecCC----CeEEEEecCCCc-ccChhhHHHHHHHHHHH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSE-LPF-LPSNTQAVILQPLGD----KGIAIIGGDTIR-GFTTSDQSWIAFIGEKL 275 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~E-f~~-LP~ntqsVlvQPig~----~Gvlvlgs~s~R-~FT~kDe~WI~~iA~KL 275 (294)
.|+.++.++++++.+.|..--|.... ++. .-..++|+||.||-. =|||-+...... .||+.|+.-++.+|+-.
T Consensus 88 gi~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~lL~~lA~~a 167 (180)
T 3dba_A 88 GIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEVFKKYLNFI 167 (180)
T ss_dssp SHHHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999875442211 111 113579999999954 478888887765 99999999999999876
Q ss_pred HHHH
Q 022619 276 DATL 279 (294)
Q Consensus 276 ~~tL 279 (294)
...+
T Consensus 168 a~~i 171 (180)
T 3dba_A 168 SLVL 171 (180)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6554
No 21
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=94.11 E-value=0.36 Score=48.15 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=60.3
Q ss_pred hhHHHHHhhccCceecccccccCCCC-CCC-CCCCCCCeeEEEecCCC-----eEEEEecCCCc-ccChhhHHHHHHHHH
Q 022619 202 GSVYLGVMRSKAQRYLANLLLYPGRS-ELP-FLPSNTQAVILQPLGDK-----GIAIIGGDTIR-GFTTSDQSWIAFIGE 273 (294)
Q Consensus 202 G~I~~r~~~~~~~iyL~nl~lyPGr~-Ef~-~LP~ntqsVlvQPig~~-----Gvlvlgs~s~R-~FT~kDe~WI~~iA~ 273 (294)
..++.++.++++++.+.|..--|... +.+ ..-.++++++|.||-.+ |||.+....++ .||+.|+.-++.+|+
T Consensus 250 ~gi~g~v~~~g~~v~i~d~~~d~~~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~~ll~~lA~ 329 (691)
T 3ibj_A 250 QGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSI 329 (691)
T ss_dssp SHHHHHHHHHCSCEEESCSTTSTTC------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTTHHHHHHHH
T ss_pred CCHHHHHHHhCCEEEecCcccCccccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 35788999999999999876544321 111 11235789999999553 89999888776 799999999999999
Q ss_pred HHHHHHhh
Q 022619 274 KLDATLAK 281 (294)
Q Consensus 274 KL~~tL~~ 281 (294)
.+..+++.
T Consensus 330 ~~aiAIen 337 (691)
T 3ibj_A 330 YCGISIAH 337 (691)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887754
No 22
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=93.28 E-value=0.092 Score=47.45 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=60.2
Q ss_pred hHHHHHhhccCceecc-cccccCCCCCC---C-CCCCCCCeeEEEecCC-C----eEEEEecCC----------------
Q 022619 203 SVYLGVMRSKAQRYLA-NLLLYPGRSEL---P-FLPSNTQAVILQPLGD-K----GIAIIGGDT---------------- 256 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~-nl~lyPGr~Ef---~-~LP~ntqsVlvQPig~-~----Gvlvlgs~s---------------- 256 (294)
.++.++.++++.+... |..--|..... + .....+++++|.||-. + |+|.+....
T Consensus 268 ~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~~~~~~~~~~~~~ 347 (398)
T 1ykd_A 268 GFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKKTGEFPPYNPETWPIA 347 (398)
T ss_dssp HHHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECCSSCCCCCCGGGTTCC
T ss_pred chhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCCccccccccccccccc
Confidence 4678889999999988 76544432111 0 0122489999999963 3 789888887
Q ss_pred ----CcccChhhHHHHHHHHHHHHHHHhh
Q 022619 257 ----IRGFTTSDQSWIAFIGEKLDATLAK 281 (294)
Q Consensus 257 ----~R~FT~kDe~WI~~iA~KL~~tL~~ 281 (294)
++.||+.|..-++.+|+.+...+++
T Consensus 348 ~~~~~~~f~~~d~~ll~~la~~~a~al~n 376 (398)
T 1ykd_A 348 PECFQASFDRNDEEFMEAFNIQAGVALQN 376 (398)
T ss_dssp CGGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988865
No 23
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=93.17 E-value=0.18 Score=40.31 Aligned_cols=49 Identities=10% Similarity=0.280 Sum_probs=43.9
Q ss_pred CCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHHHHhh
Q 022619 233 PSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAK 281 (294)
Q Consensus 233 P~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~tL~~ 281 (294)
..+++|+|+.||-. -|+|.+-...+|.||+.|...++.+|+.+..++++
T Consensus 115 ~~~~~s~l~vPi~~~~~l~G~l~~~~~~~~~~~~~e~~~l~~la~~~a~ai~~ 167 (172)
T 2k2n_A 115 SMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQ 167 (172)
T ss_dssp TTTCSEEEECCCSCSSCCCEEEEEEECSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCeEEEEEEEEECCEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999943 58999999999999999999999999999988875
No 24
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=93.00 E-value=0.15 Score=42.39 Aligned_cols=128 Identities=13% Similarity=0.200 Sum_probs=80.6
Q ss_pred HHhHHHHHHHHhhhccccEEEEE-EC----CeEEEEEeeccC-CCCCccchhhcccccchhhHHHHHhhccCceeccccc
Q 022619 148 VSELLWAWESLSAVTCCRSLVVV-YD----GIYLLQIGMAAE-SGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLL 221 (294)
Q Consensus 148 k~ELAWas~~LLtnT~a~svlV~-~~----G~vllrRG~~~~-~~~~g~a~~~d~~~~~pG~I~~r~~~~~~~iyL~nl~ 221 (294)
.+=|.-+...+...+.+.-++|| ++ |+++.. -.-.. ++-.|... ..+.| | +-+....++++.+.+.|..
T Consensus 13 ~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE-~~~~~~~s~lg~~~--~~~~~-~-~~~~~~~~~g~~~~I~Dv~ 87 (171)
T 4glq_A 13 QAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAE-SVAEGWPQARDQVI--EDPCF-R-EHWVEAYRQGRIQATTDIF 87 (171)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEE-EECTTSCCCTTCEE--CCTHH-H-HHTHHHHHTTCCEEESCGG
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEE-EcCCCCccccCCcc--Ccccc-H-HHHHHHHHcCCEEEEcCcC
Confidence 34455667777788888888877 33 444432 11111 11111100 00111 1 2234567788888888765
Q ss_pred ccCCCCCC--CC-CCCCCCeeEEEecC--C--CeEEEEec-CCCcccChhhHHHHHHHHHHHHHHHhh
Q 022619 222 LYPGRSEL--PF-LPSNTQAVILQPLG--D--KGIAIIGG-DTIRGFTTSDQSWIAFIGEKLDATLAK 281 (294)
Q Consensus 222 lyPGr~Ef--~~-LP~ntqsVlvQPig--~--~Gvlvlgs-~s~R~FT~kDe~WI~~iA~KL~~tL~~ 281 (294)
. ++..+- +| -.-|.+|.|+.||- + -|+|.+-. ..+|.||+.|..++..+|+.+..++.+
T Consensus 88 ~-~~~~~~~~~~l~~~~v~S~L~vPi~~~~~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~ql~iAi~q 154 (171)
T 4glq_A 88 K-AGLTECHLNQLRPLKVRANLVVPMVIDDQLFGLLIAHQASEPRQWQEIEIDQFSELASTGSLVLER 154 (171)
T ss_dssp G-TTCCHHHHHHHGGGTEEEEEEEEEEETTEEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCHHHHHHHHhcCCcEEEEEEEEECCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 222211 22 25689999999983 3 57888877 689999999999999999999999876
No 25
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=92.96 E-value=0.14 Score=41.99 Aligned_cols=49 Identities=10% Similarity=0.280 Sum_probs=43.6
Q ss_pred CCCCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHHHHhh
Q 022619 233 PSNTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATLAK 281 (294)
Q Consensus 233 P~ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~tL~~ 281 (294)
..|++|+||.||-. -|+|.+-...+|.||+.|...++.+|+-+..++++
T Consensus 145 ~~~~~S~l~vPi~~~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~ 197 (208)
T 2lb5_A 145 SMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQ 197 (208)
T ss_dssp HTTCSEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcEEEEEEEEECCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999943 47999999999999999999999999999988875
No 26
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=91.60 E-value=0.086 Score=47.64 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=59.3
Q ss_pred hHHHHHhhccCceecccccccCCCCCCC-CC----CCCCCeeEEEecCC-----CeEEEEecC---------------CC
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSELP-FL----PSNTQAVILQPLGD-----KGIAIIGGD---------------TI 257 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~L----P~ntqsVlvQPig~-----~Gvlvlgs~---------------s~ 257 (294)
.+|..+.++++.+.+.|...-..+..|. .+ ..+++++++.||-. -|+|.+... .+
T Consensus 81 g~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~~~~~~~~~~~l~~~~~~ 160 (398)
T 1ykd_A 81 GIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNKLKPYSPPDALLAERIDN 160 (398)
T ss_dssp HHHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEEBCSCCCTTCCHHHHBCT
T ss_pred chhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEeccCCccccccccccccccc
Confidence 4788899999999998875421123331 11 24688999999953 378888877 78
Q ss_pred cccChhhHHHHHHHHHHHHHHHhh
Q 022619 258 RGFTTSDQSWIAFIGEKLDATLAK 281 (294)
Q Consensus 258 R~FT~kDe~WI~~iA~KL~~tL~~ 281 (294)
+.||+.|+.-++.+|+.+...++.
T Consensus 161 ~~f~~~d~~~l~~~a~~~~~al~~ 184 (398)
T 1ykd_A 161 QGFTSADEQLFQEFAPSIRLILES 184 (398)
T ss_dssp TCCCHHHHHHGGGTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888877753
No 27
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=88.81 E-value=0.46 Score=42.04 Aligned_cols=76 Identities=20% Similarity=0.089 Sum_probs=55.2
Q ss_pred HHHHHhhccCceecccccccCCCCCCC-CCCCCCCeeEEEecCCC------eEEEEecCCC-cccChhhHHHHHHHHHHH
Q 022619 204 VYLGVMRSKAQRYLANLLLYPGRSELP-FLPSNTQAVILQPLGDK------GIAIIGGDTI-RGFTTSDQSWIAFIGEKL 275 (294)
Q Consensus 204 I~~r~~~~~~~iyL~nl~lyPGr~Ef~-~LP~ntqsVlvQPig~~------Gvlvlgs~s~-R~FT~kDe~WI~~iA~KL 275 (294)
+|..+.++++++.+.|..--|- .+++ ..-.+++++++.||-.+ |+|.+.+..+ +.||+.|+.-+..+|+-+
T Consensus 82 ~~g~~~~~~~~~~i~d~~~~~~-~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d~~~l~~la~~~ 160 (368)
T 1mc0_A 82 RLGQVVEDKQCIQLKDLTSDDV-QQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDEHVIQHCFHYT 160 (368)
T ss_dssp SHHHHHHHCCCEEGGGSCHHHH-HHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEecccccccc-cccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHHHHHHHHHHHHH
Confidence 6788999999999998764331 1111 01123899999999544 7787666554 579999999999999888
Q ss_pred HHHHh
Q 022619 276 DATLA 280 (294)
Q Consensus 276 ~~tL~ 280 (294)
...+.
T Consensus 161 ~~al~ 165 (368)
T 1mc0_A 161 GTVLT 165 (368)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 28
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=84.72 E-value=3.2 Score=33.10 Aligned_cols=110 Identities=8% Similarity=0.096 Sum_probs=71.0
Q ss_pred HHHHhhhccccEEEEEECCeEEEEEeeccCCCCCccchhhcccccchhhHHHHHhhccCceecccccccCCCCCCCCCCC
Q 022619 155 WESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELPFLPS 234 (294)
Q Consensus 155 s~~LLtnT~a~svlV~~~G~vllrRG~~~~~~~~g~a~~~d~~~~~pG~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ 234 (294)
.+.|...|.+ .|.|..+.+++-..|.-.. --.+ .+. ++..+++|++++.++..|...++--.+-+ .
T Consensus 8 AeiI~~~~~~-aV~ItD~~~ilA~~G~g~~-------~~~~-~~i--s~~~~~~i~~~k~~~~~~~~~~~~~~~~~---~ 73 (123)
T 2w1r_A 8 ADALYDSLGH-SVLICDRDVYIAVSGSSKK-------DYLN-KSI--SEMLERTMDQRSSVLESDAKSVQLVNGID---E 73 (123)
T ss_dssp HHHHHHHHCS-EEEEECSSBEEEEESSCHH-------HHBT-CBB--CHHHHHHHHHCSCEEESSCEEEESBTTCE---E
T ss_pred HHHHHHHHCC-eEEEEcCccEEEEEecChh-------hcCC-Ccc--CHHHHHHHHcCCEEEEcCCccccccCCCC---C
Confidence 4678889999 9999888888765663111 0011 122 45688899999999887665443322111 1
Q ss_pred CCCeeEEEecCC----CeEEEEecCCCcccChhhHHHHHHHHHHHHHHH
Q 022619 235 NTQAVILQPLGD----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDATL 279 (294)
Q Consensus 235 ntqsVlvQPig~----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~tL 279 (294)
...+.++.||-. -|.|.+- ...+.|++.++.-.+++|+-|..-+
T Consensus 74 ~~~s~ii~PI~~~g~viG~i~l~-~~~~~~~~~~~~la~gla~lls~Qm 121 (123)
T 2w1r_A 74 DMNSYTVGPIVANGDPIGAVVIF-SKDQTMGEVEHKAVETAAGFLARQM 121 (123)
T ss_dssp EESEEEEEEEEETTEEEEEEEEE-ESSSCCCHHHHHHHHHHHHHHC---
T ss_pred CeeEEEEEEEEECCEEEEEEEEE-EcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 246889999843 4566666 4444599999998888887765543
No 29
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=82.48 E-value=0.54 Score=46.92 Aligned_cols=79 Identities=18% Similarity=0.078 Sum_probs=55.8
Q ss_pred hhHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCCC------eEEEEecC-CCcccChhhHHHHHHHHHH
Q 022619 202 GSVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGDK------GIAIIGGD-TIRGFTTSDQSWIAFIGEK 274 (294)
Q Consensus 202 G~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~~------Gvlvlgs~-s~R~FT~kDe~WI~~iA~K 274 (294)
|.|+.++.++++++.+.|..--|-+.........+++++|.||-.+ |+|.+... .++.||+.|+.-+..+|.-
T Consensus 80 ~Gi~g~v~~~~~pv~i~d~~~~~~~~~~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d~~lL~~la~~ 159 (691)
T 3ibj_A 80 TGCLGQVVEDKKSIQLKDLTSEDVQQLQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDEHVIQHCFHY 159 (691)
T ss_dssp CSSSHHHHHHCCCEEGGGSCHHHHHHHHHHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHCCeEEeccchhccccccccccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 3578889999999999988643311000111223899999999665 77776655 4468999999999998877
Q ss_pred HHHHHh
Q 022619 275 LDATLA 280 (294)
Q Consensus 275 L~~tL~ 280 (294)
+...+.
T Consensus 160 ~a~al~ 165 (691)
T 3ibj_A 160 TSTVLT 165 (691)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 30
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=82.16 E-value=3 Score=35.83 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=38.2
Q ss_pred CCCeeEEEec-CCCe----EEEE-ecCCCcccChhhHHHHHHHHHHHHHHHhh
Q 022619 235 NTQAVILQPL-GDKG----IAII-GGDTIRGFTTSDQSWIAFIGEKLDATLAK 281 (294)
Q Consensus 235 ntqsVlvQPi-g~~G----vlvl-gs~s~R~FT~kDe~WI~~iA~KL~~tL~~ 281 (294)
-|++|+|.|+ +.+| ++++ -.-...+|++.|..=++.+|.-+...++.
T Consensus 95 ~t~svl~vPL~~~~g~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~aien 147 (160)
T 3cit_A 95 HLPCVLLLPLRGADEGSFGTLVLANSVAISAPDGEDIESLQLLATLLAAHLEN 147 (160)
T ss_dssp SSCEEEEEEEECSSSSEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeecCCCcEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999 6654 5555 55555589999999999999999888765
No 31
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=72.38 E-value=0.76 Score=47.57 Aligned_cols=79 Identities=6% Similarity=0.013 Sum_probs=0.0
Q ss_pred hHHHHHhhccCceecccccccCCCCC-CCCCC----CCCCeeEEEecCCC------eEEEEecCCC------cccChhhH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSE-LPFLP----SNTQAVILQPLGDK------GIAIIGGDTI------RGFTTSDQ 265 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~E-f~~LP----~ntqsVlvQPig~~------Gvlvlgs~s~------R~FT~kDe 265 (294)
.++..+.++++.+.+.|..--|--.. .+... .++++++|.||-.+ |||.+....+ |.||+.|+
T Consensus 413 gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~~~~~G~~~~Ft~~d~ 492 (878)
T 3bjc_A 413 MYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGKVKPFNRNDE 492 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHhhcCCeeeecCcccccccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcCCCcccCCCCCCHHHH
Confidence 35777888899988887642221000 01111 34889999999654 7888877665 79999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 022619 266 SWIAFIGEKLDATLAK 281 (294)
Q Consensus 266 ~WI~~iA~KL~~tL~~ 281 (294)
..++.+|.-+...++.
T Consensus 493 ~lL~~lA~~aaiAIen 508 (878)
T 3bjc_A 493 QFLEAFVIFCGLGIQN 508 (878)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988777654
No 32
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=58.22 E-value=2.1 Score=44.31 Aligned_cols=79 Identities=15% Similarity=0.047 Sum_probs=0.0
Q ss_pred hHHHHHhhccCceecccccccCCCCCC-CC-CCCCCCeeEEEecCC-----CeEEEEecCCCc---ccChhhHHHHHHHH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSEL-PF-LPSNTQAVILQPLGD-----KGIAIIGGDTIR---GFTTSDQSWIAFIG 272 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef-~~-LP~ntqsVlvQPig~-----~Gvlvlgs~s~R---~FT~kDe~WI~~iA 272 (294)
.++..+.++++++.+.|...-|..... +. ...++++++|.||-. -|+|.+.+..++ .||+.|+.-++.+|
T Consensus 231 gi~g~v~~~g~pv~I~D~~~dp~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~D~~lL~~lA 310 (878)
T 3bjc_A 231 GIVGHVAALGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDFAAYL 310 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHhcCceEEeCCcccCcccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHH
Confidence 367889999999999987654432222 11 123588999999965 368888877654 99999999999999
Q ss_pred HHHHHHHhh
Q 022619 273 EKLDATLAK 281 (294)
Q Consensus 273 ~KL~~tL~~ 281 (294)
+-+...|+.
T Consensus 311 ~~~a~AL~n 319 (878)
T 3bjc_A 311 AFCGIVLHN 319 (878)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 988887763
No 33
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=51.27 E-value=30 Score=32.11 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=53.2
Q ss_pred hHHHHHhhccCceecccccccCCCCCCCCCCCCCCeeEEEecCC-----CeEEEEecCCCcccChhhHHHHHHHHHHHHH
Q 022619 203 SVYLGVMRSKAQRYLANLLLYPGRSELPFLPSNTQAVILQPLGD-----KGIAIIGGDTIRGFTTSDQSWIAFIGEKLDA 277 (294)
Q Consensus 203 ~I~~r~~~~~~~iyL~nl~lyPGr~Ef~~LP~ntqsVlvQPig~-----~Gvlvlgs~s~R~FT~kDe~WI~~iA~KL~~ 277 (294)
++++.++++++..|+.+...--+. .++.++.++|-|+-+ -|++++.-=-..+|++..=.-+.-++.....
T Consensus 74 pLVr~alet~~l~~v~~~~~~~~~-----~~~~sryL~viPLld~~g~i~Gvl~V~~mpF~a~~~~~LqlL~VL~g~~ad 148 (298)
T 4eu0_A 74 LLVRTCLERGELVSVRQELLERGE-----QRAHSAAAVCVPLVDTDGRILALLAVEQMPFFVFNERTFSLLAILAGHIAD 148 (298)
T ss_dssp HHHHHHHHHTSCEECCC------------------CCEEEEEECTTSCEEEEEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCceeechhhhhccc-----cccccceEEEEEeecCCCcEEEEEEEecCCccccCHhHHHHHHHHHHHHHH
Confidence 678999999999999875433332 356889999999642 6899999999999999999999888888777
Q ss_pred HHhh
Q 022619 278 TLAK 281 (294)
Q Consensus 278 tL~~ 281 (294)
.+..
T Consensus 149 ~i~~ 152 (298)
T 4eu0_A 149 LLQS 152 (298)
T ss_dssp HHGG
T ss_pred HHHh
Confidence 6654
No 34
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=46.59 E-value=38 Score=33.54 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhccccEEEEEECCeEEEEEeeccCCCCCccchhhcccccchhhHHHHHhhccCceecccccccCCCCCCC
Q 022619 151 LLWAWESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANLLLYPGRSELP 230 (294)
Q Consensus 151 LAWas~~LLtnT~a~svlV~~~G~vllrRG~~~~~~~~g~a~~~d~~~~~pG~I~~r~~~~~~~iyL~nl~lyPGr~Ef~ 230 (294)
|.-.+.-|+.-..|.+++||++|++. ..|...+. + .--.|.++..+....+|-.| .||+..+..
T Consensus 339 l~~~~~~l~~ll~adg~al~~~~~~~-~~G~~P~~-----~--------~i~~l~~wl~~~~~~v~~Td--~~p~a~~~~ 402 (505)
T 3nhq_A 339 LAHPDDGIAALIPCDGALVMLGGRTL-SIRGDFER-----Q--------AGNVLQRLQRDPERDIYHTD--NWPQPSEDS 402 (505)
T ss_dssp HHCTTTSHHHHTTCSEEEEEETTEEE-EESSCCHH-----H--------HHHHHHHHHTCTTCSEEEES--CC-------
T ss_pred HHHhhHHHHHHhCCCeEEEEECCeEE-ecCCCCCH-----H--------HHHHHHHHHHhcCCCeEEeC--CCcchhhcc
Confidence 34446667888899999999999865 45644321 1 11344566555554477777 888766532
Q ss_pred CCCCCCCeeEEEecCC--CeEEE
Q 022619 231 FLPSNTQAVILQPLGD--KGIAI 251 (294)
Q Consensus 231 ~LP~ntqsVlvQPig~--~Gvlv 251 (294)
.+.+...|++..||.. +.+|+
T Consensus 403 ~~~~~~~G~lai~ls~~~~~~l~ 425 (505)
T 3nhq_A 403 PDGGDCCGVLAIRFHRQESGWIF 425 (505)
T ss_dssp ----CCCEEEEEEEETTTTEEEE
T ss_pred ccccccceEEEEEecCCCCcEEE
Confidence 2468889999999965 45544
No 35
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=46.37 E-value=26 Score=31.44 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=41.6
Q ss_pred CCCeeEEEecCC---CeEEEEecCCCcccCh-hhHHHHHHHHHHHHHHHhhccCC
Q 022619 235 NTQAVILQPLGD---KGIAIIGGDTIRGFTT-SDQSWIAFIGEKLDATLAKYSNI 285 (294)
Q Consensus 235 ntqsVlvQPig~---~Gvlvlgs~s~R~FT~-kDe~WI~~iA~KL~~tL~~~~~~ 285 (294)
..+|+.|-|++. -|+|++||.-+.-|++ .+--+++-+|+.+...|.+-...
T Consensus 193 ~v~S~AllpL~~~~~~GlLalGS~D~~rF~p~mgT~fL~~La~vvs~~L~r~~~~ 247 (252)
T 3e98_A 193 EIGSAAVVSLSFQGLHGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPRFSSP 247 (252)
T ss_dssp GCCEEEEEEEESSSEEEEEEEEESSTTGGGSTTTTHHHHHHHHHHHHHGGGC---
T ss_pred cccceEEEEcCCCCceEEEEEcCCChhhcCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 578999999965 4799999999888875 58889999999999999875443
No 36
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis}
Probab=43.24 E-value=40 Score=31.40 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=37.0
Q ss_pred HHHhhhccccEEEEEECCeEEEEEeeccCCCCCccchhhcccccchhhHHHHHhhccCceecccc
Q 022619 156 ESLSAVTCCRSLVVVYDGIYLLQIGMAAESGNSGEAVIVDASKLKQGSVYLGVMRSKAQRYLANL 220 (294)
Q Consensus 156 ~~LLtnT~a~svlV~~~G~vllrRG~~~~~~~~g~a~~~d~~~~~pG~I~~r~~~~~~~iyL~nl 220 (294)
+..|..|.|.++||..+|+++..+ |.+.-..+.--.+..++|..-+-++-.+.++++. .|-+.
T Consensus 102 ~~~l~~~~t~a~lV~k~GkIv~E~-Y~~~~~~dt~~~i~SvtKs~ta~~i~~lve~G~l-~ldd~ 164 (422)
T 4gb7_A 102 KELLDDNKTDAFVVVHNGQLVYER-YFNGYNESEPHGMASLAKVFTGAIIQSLAEENRI-DLEKT 164 (422)
T ss_dssp HHHHHHTTEEEEEEEETTEEEEEE-ECTTCCTTSCEECGGGGHHHHHHHHHHHHHTTSS-CTTSB
T ss_pred HHHHHhcCCCEEEEEECCEEEEEe-CCCCCCCCCeeeeeeccHHHHHHHHHHHHHcCCc-ccCcc
Confidence 566788999999999999988766 4443212222223334452234444555566554 55554
No 37
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=39.04 E-value=9.2 Score=26.65 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=9.1
Q ss_pred CCCHHHHHhHHHH
Q 022619 142 YLPDSVVSELLWA 154 (294)
Q Consensus 142 ~Lsd~~k~ELAWa 154 (294)
.-+|..|+||||-
T Consensus 8 ~~~D~aqEEMAWq 20 (45)
T 3im4_C 8 GNTDEAQEELAWK 20 (45)
T ss_dssp ---CHHHHHHHHH
T ss_pred CCchHHHHHHHHH
Confidence 3468899999994
No 38
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=27.96 E-value=63 Score=19.77 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.0
Q ss_pred cccChhhHHHHHHHHHHHHHHHh
Q 022619 258 RGFTTSDQSWIAFIGEKLDATLA 280 (294)
Q Consensus 258 R~FT~kDe~WI~~iA~KL~~tL~ 280 (294)
|++|..|+.=|+.|-+++.-.|.
T Consensus 2 rgltsrdrrriarwekriayalk 24 (26)
T 1hji_B 2 RGLTSRDRRRIARWEKRIAYALK 24 (26)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHh
Confidence 88999999999999988876653
No 39
>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A
Probab=21.65 E-value=1.5e+02 Score=25.16 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=33.4
Q ss_pred cccccCCCCCCCCCCCCCCe-eEEEecCCCeEEEEecC-------CCcccChhhHHHHHHHHHHH
Q 022619 219 NLLLYPGRSELPFLPSNTQA-VILQPLGDKGIAIIGGD-------TIRGFTTSDQSWIAFIGEKL 275 (294)
Q Consensus 219 nl~lyPGr~Ef~~LP~ntqs-VlvQPig~~Gvlvlgs~-------s~R~FT~kDe~WI~~iA~KL 275 (294)
++.+|||..+|.-+|.-+-+ |.+-=+.+.--..-+-. .+.-||++|+.+++.+-+-|
T Consensus 65 dlii~P~d~~f~~v~~c~tGRVyvLkFss~~r~fFWmQe~~~~~~~~~~~s~kD~~~~~~vn~lL 129 (156)
T 4b4t_X 65 SLILIPGETMWVPIKSSKSGRIFALVFSSNERYFFWLQEKNSGNLPLNELSAKDKEIYNKMIGVL 129 (156)
T ss_dssp EECCCTTTSEEECCSSCSSCCEEEEECSSSCCEEEEECSSCSSSSSSCCCSSSSHHHHHHHHHHH
T ss_pred ceEEcCCceEEEEcCCCCCcEEEEEEecCCCcEEEEeecCCccCCcccccchhHHHHHHHHHHHh
Confidence 67889999999888865443 44433422111222222 23458999998765554433
Done!