BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022621
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LDQ4|TAP46_ARATH PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1
SV=2
Length = 405
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/295 (70%), Positives = 250/295 (84%), Gaps = 1/295 (0%)
Query: 1 MELVPEEELEAVAQAKPTAFTDQRARKIARFKRQRAAESKLQEIKERKERRGRSTRAAAP 60
MELVP+EELEA ++ A D+RA KIARFKRQ+AAE+KL EIKERKERRGRST+A+A
Sbjct: 111 MELVPDEELEASSRGGSGAPADRRALKIARFKRQKAAEAKLLEIKERKERRGRSTKASAL 170
Query: 61 SAPVEAGEEDVLDDDGEEEREAWLTTISLAVCKALDLLEMLKKEEDMLSAVKERQLKGGE 120
S PVE+GE+D+ DDD EEEREAWL++I+LA+CKA+DLLEMLK+EE+MLSA+KERQLK GE
Sbjct: 171 STPVESGEDDIPDDDSEEEREAWLSSINLAICKAIDLLEMLKREEEMLSAIKERQLKDGE 230
Query: 121 EEFSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCATFAQDVLEGRAKVSQAHEHKHQ 180
FS LD+R+KKAE+WHRDAA R QY+KPAQPITCATFAQDVLEGRA VSQ HEHK+Q
Sbjct: 231 GGFSRDALDDRTKKAETWHRDAAARIQYSKPAQPITCATFAQDVLEGRASVSQGHEHKNQ 290
Query: 181 PMIFGPASLVGGGLTSERERMAAQVFQPMHRLPTMSIEEAGLKEMEMMNKWQEMNVKLME 240
P+IFGPAS+VGG L++ERERM AQVFQP HR+PTM IE+AGL EM +MN WQE K +E
Sbjct: 291 PLIFGPASIVGGPLSTERERMIAQVFQPSHRMPTMCIEDAGLTEMNIMNDWQEQTKKAIE 350
Query: 241 EANSAWYKDN-RKLGTSENDNEDDDDDAVQKARAFDDWKDDNPRGAGNKKLTPCG 294
EA ++WY D + + +++D+D++AV KARAFDDWKDDNPRGAGNKKLTPCG
Sbjct: 351 EATTSWYNDKPLRRKEEDEEDDDEDEEAVMKARAFDDWKDDNPRGAGNKKLTPCG 405
>sp|Q9Y7T1|YCJ5_SCHPO Uncharacterized protein C63.05 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC63.05 PE=3 SV=1
Length = 323
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 113/288 (39%), Gaps = 84/288 (29%)
Query: 9 LEAVAQAKPTAFTDQRARKIARFKRQRAAESKLQEIKERKERRGRSTRAAAPSAPVEAGE 68
L+ + KP D R KIAR++ ++ E +L+ A S E E
Sbjct: 105 LKPMQDEKPKTEADTRTLKIARYRMRQNLEKELK----------------ALSKDSETNE 148
Query: 69 EDVLDDDGEEEREAWLTTISLAVCKALDLLEMLKKEEDMLSAVKERQLKGGE--EEFSEV 126
E +ER+ WLT + +AV LD L ++ E D+L + +K + E+ E
Sbjct: 149 E--------QERKFWLTKLQIAVEDTLDSLPHIEMEIDLLKRAQAELMKSEDSPEKDEET 200
Query: 127 VLDERSKKAE--SWHRDAAIRAQY----TKPAQPITCATFAQDVLEGRAKVSQAHEHKHQ 180
+ E K+ E SW D R + +P QP T
Sbjct: 201 LRREERKQKEGSSWRLDLNTRDKILDKNNRPLQPFT------------------------ 236
Query: 181 PMIFGPASLVGGGLTSERERMAAQVFQPMHRLPTMSIEEAGLKEMEMMNKWQEMNVKLME 240
+ S+R VF + LPTM+++E +EM+
Sbjct: 237 -------------IVSDRNETRKNVFGFGYNLPTMTVDEYLDEEMK-------------- 269
Query: 241 EANSAWYKDNRKLGTSENDNEDDDDDA-VQKARAFDDWKDDNPRGAGN 287
N KDN S+++++ + DA K R +D++K+ NPRG+GN
Sbjct: 270 RGNIISQKDNPPKSDSDDEDDYEKLDAKTMKDRYWDEFKEANPRGSGN 317
>sp|Q9QZ29|IGB1B_MOUSE Immunoglobulin-binding protein 1b OS=Mus musculus GN=Igbp1b PE=2
SV=1
Length = 343
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 24/29 (82%)
Query: 261 EDDDDDAVQKARAFDDWKDDNPRGAGNKK 289
ED+D++A+ + + +DDWKD +PRG GN++
Sbjct: 312 EDEDENALHRMQEWDDWKDTHPRGYGNRQ 340
>sp|O08836|IGBP1_RAT Immunoglobulin-binding protein 1 OS=Rattus norvegicus GN=Igbp1 PE=2
SV=2
Length = 340
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 263 DDDDAVQKARAFDDWKDDNPRGAGNKK 289
+++ A+ + R +DDWKD +PRG GN++
Sbjct: 311 NEEKALHRMREWDDWKDTHPRGYGNRQ 337
>sp|P78318|IGBP1_HUMAN Immunoglobulin-binding protein 1 OS=Homo sapiens GN=IGBP1 PE=1 SV=1
Length = 339
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 267 AVQKARAFDDWKDDNPRGAGNKK 289
+ +AR +DDWKD +PRG GN++
Sbjct: 314 TLHRAREWDDWKDTHPRGYGNRQ 336
>sp|Q61249|IGBP1_MOUSE Immunoglobulin-binding protein 1 OS=Mus musculus GN=Igbp1 PE=1 SV=1
Length = 340
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 264 DDDAVQKARAFDDWKDDNPRGAGNKK 289
++ A+ + R +DDWKD +PRG GN++
Sbjct: 312 EEKALHRMREWDDWKDTHPRGYGNRQ 337
>sp|Q925S8|YMEL1_RAT ATP-dependent zinc metalloprotease YME1L1 OS=Rattus norvegicus
GN=Yme1l1 PE=2 SV=1
Length = 715
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 90 AVCKALDLLEMLKKEEDMLSAVKERQLKGGEEEFSEVVLDERSKKAESWHRDA-AIRAQY 148
A+ A+D EM+ +E L K++ L G E E+ D ++K ++H AI A Y
Sbjct: 496 ALKAAVDGKEMVTMKE--LEFSKDKILMGPERRSVEI--DNKNKTITAYHESGHAIIAYY 551
Query: 149 TKPAQPITCATF 160
TK A PI AT
Sbjct: 552 TKDAMPINKATI 563
>sp|O88967|YMEL1_MOUSE ATP-dependent zinc metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1
PE=2 SV=1
Length = 715
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 90 AVCKALDLLEMLKKEEDMLSAVKERQLKGGEEEFSEVVLDERSKKAESWHRDA-AIRAQY 148
A+ A+D EM+ +E L K++ L G E E+ D ++K ++H AI A Y
Sbjct: 496 ALKAAVDGKEMVTMKE--LEFSKDKILMGPERRSVEI--DNKNKTITAYHESGHAIIAYY 551
Query: 149 TKPAQPITCATF 160
TK A PI AT
Sbjct: 552 TKDAMPINKATI 563
>sp|Q96TA2|YMEL1_HUMAN ATP-dependent zinc metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1
PE=1 SV=2
Length = 773
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 90 AVCKALDLLEMLKKEEDMLSAVKERQLKGGEEEFSEVVLDERSKKAESWHRDA-AIRAQY 148
A+ A+D EM+ +E L K++ L G E E+ D ++K ++H AI A Y
Sbjct: 554 ALKAAVDGKEMVTMKE--LEFSKDKILMGPERRSVEI--DNKNKTITAYHESGHAIIAYY 609
Query: 149 TKPAQPITCATF 160
TK A PI AT
Sbjct: 610 TKDAMPINKATI 621
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,914,315
Number of Sequences: 539616
Number of extensions: 4656479
Number of successful extensions: 23078
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 22412
Number of HSP's gapped (non-prelim): 748
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)