Query 022621
Match_columns 294
No_of_seqs 114 out of 270
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 08:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022621.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022621hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bwga1 a.4.5.6 (A:5-82) Trans 22.2 21 0.0015 23.8 2.1 18 198-215 8-25 (78)
2 d1z84a1 d.13.1.2 (A:23-195) Ga 18.4 42 0.0031 25.9 3.5 16 205-220 106-123 (173)
3 d2h5na1 a.287.1.2 (A:1-132) Hy 15.4 25 0.0018 25.2 1.2 10 211-220 117-126 (132)
4 d1soxa2 d.120.1.1 (A:3-93) Sul 13.6 28 0.0021 24.0 1.0 10 211-220 1-10 (91)
5 d1t27a_ d.129.3.4 (A:) Phoshat 11.9 28 0.002 29.3 0.6 9 211-220 9-17 (269)
6 d1guqa1 d.13.1.2 (A:2-177) Gal 11.9 96 0.007 23.7 4.0 16 205-220 109-126 (176)
7 d2ahob1 a.60.14.1 (B:85-175) E 11.9 1.3E+02 0.0094 20.4 4.3 25 22-46 4-28 (91)
8 d1v4ra1 a.4.5.6 (A:1-100) Tran 11.6 32 0.0023 24.1 0.8 18 197-214 18-35 (100)
9 d1hw1a1 a.4.5.6 (A:5-78) Fatty 11.6 50 0.0037 21.7 1.8 18 198-215 13-30 (74)
10 d3deoa1 b.34.13.2 (A:85-128) C 11.0 32 0.0023 20.9 0.5 7 276-282 21-27 (44)
No 1
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=22.22 E-value=21 Score=23.78 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=16.6
Q ss_pred HHHHHHhcCCCCCCCCcc
Q 022621 198 RERMAAQVFQPMHRLPTM 215 (294)
Q Consensus 198 R~~lq~~VFgpG~~LPTM 215 (294)
+..+..+.|.||..||+.
T Consensus 8 ~~~I~~g~l~~G~~LPse 25 (78)
T d3bwga1 8 ETYIEEHQLQQGDKLPVL 25 (78)
T ss_dssp HHHHHHTTCCTTCBCCCH
T ss_pred HHHHHcCCCCCcCCCcCH
Confidence 889999999999999983
No 2
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.36 E-value=42 Score=25.88 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=14.5
Q ss_pred cCCCCC--CCCcccHHHH
Q 022621 205 VFQPMH--RLPTMSIEEA 220 (294)
Q Consensus 205 VFgpG~--~LPTMTVeE~ 220 (294)
||.|.| +|++||++++
T Consensus 106 i~sp~H~~~l~~~~~e~i 123 (173)
T d1z84a1 106 IESPVHSIQLSDIDPVGI 123 (173)
T ss_dssp ECCSSSSCCGGGSCHHHH
T ss_pred EeCccccCChhhCCHHHH
Confidence 689999 7999999987
No 3
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=15.45 E-value=25 Score=25.21 Aligned_cols=10 Identities=60% Similarity=0.866 Sum_probs=8.8
Q ss_pred CCCcccHHHH
Q 022621 211 RLPTMSIEEA 220 (294)
Q Consensus 211 ~LPTMTVeE~ 220 (294)
.||||||=|.
T Consensus 117 glptmtvmea 126 (132)
T d2h5na1 117 GLPTMTVMEA 126 (132)
T ss_dssp TCCCCCHHHH
T ss_pred CCchhHHHHH
Confidence 6999999876
No 4
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.59 E-value=28 Score=23.98 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=9.0
Q ss_pred CCCcccHHHH
Q 022621 211 RLPTMSIEEA 220 (294)
Q Consensus 211 ~LPTMTVeE~ 220 (294)
+||++|.+|.
T Consensus 1 slP~~T~~Ev 10 (91)
T d1soxa2 1 SYPEYTREEV 10 (91)
T ss_dssp CCCEECHHHH
T ss_pred CCCccCHHHH
Confidence 6999999987
No 5
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.89 E-value=28 Score=29.35 Aligned_cols=9 Identities=44% Similarity=0.748 Sum_probs=8.0
Q ss_pred CCCcccHHHH
Q 022621 211 RLPTMSIEEA 220 (294)
Q Consensus 211 ~LPTMTVeE~ 220 (294)
.|| ||||||
T Consensus 9 ~LP-ltveEY 17 (269)
T d1t27a_ 9 ILP-VSVDEY 17 (269)
T ss_dssp EES-SCHHHH
T ss_pred ecC-CcHHHH
Confidence 488 999999
No 6
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=11.88 E-value=96 Score=23.67 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=14.7
Q ss_pred cCCCCC--CCCcccHHHH
Q 022621 205 VFQPMH--RLPTMSIEEA 220 (294)
Q Consensus 205 VFgpG~--~LPTMTVeE~ 220 (294)
||.|.| +|.+||++++
T Consensus 109 i~sp~H~~~l~~~~~~~i 126 (176)
T d1guqa1 109 CFSPDHSKTLPELSVAAL 126 (176)
T ss_dssp ESCSCTTCCGGGSCHHHH
T ss_pred EECcccccChhhCCHHHH
Confidence 789999 7999999987
No 7
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=11.87 E-value=1.3e+02 Score=20.42 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022621 22 DQRARKIARFKRQRAAESKLQEIKE 46 (294)
Q Consensus 22 ~~R~~KIaryK~eKel~~kL~~L~~ 46 (294)
.+|..||..||.+|....-|..+-.
T Consensus 4 ~qrr~k~~~~k~~qka~~il~~vAe 28 (91)
T d2ahob1 4 DERRKKNLQWKKIQRLDKILELVSQ 28 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999888866
No 8
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=11.63 E-value=32 Score=24.06 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCCCCCCc
Q 022621 197 ERERMAAQVFQPMHRLPT 214 (294)
Q Consensus 197 ~R~~lq~~VFgpG~~LPT 214 (294)
-|+.+..+.|.||..||+
T Consensus 18 i~~~I~~g~l~~G~~LPs 35 (100)
T d1v4ra1 18 FRTLIKSGELAPGDTLPS 35 (100)
T ss_dssp HHHHTTTTSCCTTSBCCC
T ss_pred HHHHHHcCCCCCcCCCcc
Confidence 499999999999999995
No 9
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.59 E-value=50 Score=21.69 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCCCCCCcc
Q 022621 198 RERMAAQVFQPMHRLPTM 215 (294)
Q Consensus 198 R~~lq~~VFgpG~~LPTM 215 (294)
++.+..+.|.||-.||+.
T Consensus 13 ~~~I~~g~~~~G~~LPs~ 30 (74)
T d1hw1a1 13 IESIWNNRFPPGTILPAE 30 (74)
T ss_dssp HHHHHTTSSCTTSBCCCH
T ss_pred HHHHHcCCCCCcCCCccH
Confidence 889999999999999984
No 10
>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.97 E-value=32 Score=20.89 Aligned_cols=7 Identities=43% Similarity=1.260 Sum_probs=5.1
Q ss_pred ccccCCC
Q 022621 276 DWKDDNP 282 (294)
Q Consensus 276 d~KD~np 282 (294)
+|||.|.
T Consensus 21 EWkD~h~ 27 (44)
T d3deoa1 21 EWKDGHS 27 (44)
T ss_dssp EETTCCC
T ss_pred EeccCCC
Confidence 6777775
Done!