Query 022622
Match_columns 294
No_of_seqs 231 out of 2017
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:56:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 1.7E-56 3.7E-61 396.2 28.2 279 16-294 2-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 3.2E-53 7E-58 387.2 30.9 287 4-294 18-306 (308)
3 PRK12895 ubiA prenyltransferas 100.0 4.2E-40 9E-45 297.0 27.4 258 3-282 7-269 (286)
4 PLN02809 4-hydroxybenzoate non 100.0 3.1E-38 6.7E-43 286.0 29.3 254 3-278 13-270 (289)
5 PRK12888 ubiA prenyltransferas 100.0 4.1E-38 8.9E-43 284.9 28.5 257 3-280 6-268 (284)
6 PRK13106 ubiA prenyltransferas 100.0 8.1E-38 1.8E-42 284.3 26.6 257 4-282 20-284 (300)
7 PRK12870 ubiA 4-hydroxybenzoat 100.0 1.4E-37 3E-42 282.5 27.3 254 5-282 18-277 (290)
8 TIGR01475 ubiA_other putative 100.0 3.4E-37 7.5E-42 279.4 27.7 255 3-278 6-264 (282)
9 PRK12876 ubiA prenyltransferas 100.0 1.9E-36 4.1E-41 273.5 29.4 266 9-292 15-297 (300)
10 PRK12873 ubiA prenyltransferas 100.0 9.3E-37 2E-41 275.5 27.1 259 4-284 15-283 (294)
11 COG0382 UbiA 4-hydroxybenzoate 100.0 1.5E-36 3.2E-41 276.2 28.4 264 4-290 18-284 (289)
12 TIGR01474 ubiA_proteo 4-hydrox 100.0 5E-36 1.1E-40 271.5 29.4 259 3-283 8-270 (281)
13 PRK12878 ubiA 4-hydroxybenzoat 100.0 4.5E-36 9.9E-41 275.0 29.1 253 4-278 38-296 (314)
14 PRK12874 ubiA prenyltransferas 100.0 4.5E-36 9.8E-41 272.4 28.7 256 3-279 12-273 (291)
15 PRK12886 ubiA prenyltransferas 100.0 6.1E-36 1.3E-40 271.7 29.4 257 3-282 12-273 (291)
16 PRK12848 ubiA 4-hydroxybenzoat 100.0 7.1E-36 1.5E-40 270.7 28.6 255 4-282 13-271 (282)
17 PRK12882 ubiA prenyltransferas 100.0 8.6E-36 1.9E-40 269.5 27.3 259 4-284 9-270 (276)
18 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.3E-35 2.7E-40 268.8 27.8 252 3-278 7-260 (279)
19 PRK12847 ubiA 4-hydroxybenzoat 100.0 2.7E-35 5.8E-40 267.4 29.6 257 5-284 16-276 (285)
20 PRK12392 bacteriochlorophyll c 100.0 3.6E-35 7.8E-40 270.2 27.9 247 4-264 17-271 (331)
21 TIGR01476 chlor_syn_BchG bacte 100.0 5.8E-35 1.3E-39 265.0 28.7 216 4-232 5-223 (283)
22 PRK12884 ubiA prenyltransferas 100.0 7.3E-35 1.6E-39 263.9 28.7 257 4-284 9-267 (279)
23 PRK07566 bacteriochlorophyll/c 100.0 1.4E-34 3E-39 265.7 28.2 216 4-230 32-249 (314)
24 KOG1381 Para-hydroxybenzoate-p 100.0 2.7E-36 5.9E-41 260.9 12.9 264 3-287 71-338 (353)
25 PRK04375 protoheme IX farnesyl 100.0 1.2E-33 2.7E-38 257.6 28.7 260 4-284 15-280 (296)
26 PRK12869 ubiA protoheme IX far 100.0 1.6E-33 3.5E-38 254.8 28.6 261 3-285 6-272 (279)
27 PRK05951 ubiA prenyltransferas 100.0 4.6E-33 1E-37 253.8 30.9 260 4-278 9-278 (296)
28 PRK13595 ubiA prenyltransferas 100.0 1.6E-33 3.5E-38 252.7 26.9 256 4-288 17-277 (292)
29 PLN00012 chlorophyll synthetas 100.0 5.4E-33 1.2E-37 259.1 30.0 263 4-284 90-362 (375)
30 TIGR02056 ChlG chlorophyll syn 100.0 4.2E-33 9.1E-38 255.0 28.5 265 4-285 21-294 (306)
31 TIGR01473 cyoE_ctaB protoheme 100.0 9.7E-33 2.1E-37 250.1 28.9 261 4-285 5-273 (280)
32 PRK06080 1,4-dihydroxy-2-napht 100.0 1.5E-31 3.3E-36 243.8 30.5 223 4-241 8-239 (293)
33 PRK12883 ubiA prenyltransferas 100.0 1.5E-31 3.2E-36 242.0 28.9 199 4-223 8-207 (277)
34 PRK13387 1,4-dihydroxy-2-napht 100.0 1.9E-30 4.2E-35 238.1 30.4 226 4-241 8-260 (317)
35 PRK12871 ubiA prenyltransferas 100.0 1.8E-30 3.8E-35 236.2 29.7 254 4-278 10-279 (297)
36 PRK13362 protoheme IX farnesyl 100.0 3.9E-30 8.4E-35 234.9 28.7 199 4-220 18-220 (306)
37 TIGR00751 menA 1,4-dihydroxy-2 100.0 3.3E-29 7.2E-34 226.5 30.9 220 7-241 1-235 (284)
38 PLN02922 prenyltransferase 100.0 1.1E-27 2.3E-32 219.5 31.5 224 4-241 20-259 (315)
39 PRK07419 1,4-dihydroxy-2-napht 100.0 1.6E-27 3.5E-32 217.1 30.9 222 4-241 17-245 (304)
40 PRK13105 ubiA prenyltransferas 100.0 7.9E-28 1.7E-32 216.6 28.4 207 4-232 6-222 (282)
41 TIGR02235 menA_cyano-plnt 1,4- 100.0 4.8E-27 1E-31 212.6 31.1 222 4-241 4-232 (285)
42 COG1575 MenA 1,4-dihydroxy-2-n 100.0 9E-27 2E-31 208.1 28.4 223 4-241 13-247 (303)
43 PLN02776 prenyltransferase 100.0 1.3E-26 2.9E-31 212.4 30.1 258 5-285 1-266 (341)
44 PF01040 UbiA: UbiA prenyltran 100.0 2.9E-27 6.2E-32 210.8 23.0 188 13-217 4-193 (257)
45 PRK12872 ubiA prenyltransferas 100.0 6.8E-27 1.5E-31 212.4 21.0 192 40-241 39-232 (285)
46 PRK12875 ubiA prenyltransferas 100.0 4.8E-26 1E-30 205.5 25.7 210 4-234 13-229 (282)
47 PRK13591 ubiA prenyltransferas 100.0 3.8E-26 8.2E-31 206.0 24.2 180 43-238 64-247 (307)
48 PRK13592 ubiA prenyltransferas 99.9 6.9E-25 1.5E-29 196.2 25.5 178 38-229 47-232 (299)
49 COG0109 CyoE Polyprenyltransfe 99.9 8.3E-22 1.8E-26 175.9 21.2 194 4-219 23-224 (304)
50 PRK12324 phosphoribose diphosp 99.8 5.6E-19 1.2E-23 160.2 21.8 127 4-140 16-145 (295)
51 PRK08238 hypothetical protein; 99.8 6.7E-18 1.4E-22 162.9 24.5 179 4-203 196-377 (479)
52 KOG4581 Predicted membrane pro 99.2 1.5E-11 3.3E-16 105.1 6.7 217 6-236 68-295 (359)
53 KOG1380 Heme A farnesyltransfe 99.2 8E-12 1.7E-16 111.7 5.0 200 4-226 99-308 (409)
54 COG1575 MenA 1,4-dihydroxy-2-n 94.0 0.22 4.7E-06 45.5 7.5 47 40-88 179-225 (303)
55 PRK13591 ubiA prenyltransferas 94.0 0.52 1.1E-05 43.3 10.0 66 55-123 197-271 (307)
56 PRK12875 ubiA prenyltransferas 93.5 1.3 2.7E-05 40.4 11.5 55 44-101 172-227 (282)
57 PRK13105 ubiA prenyltransferas 93.0 0.71 1.5E-05 42.0 9.1 58 44-103 167-224 (282)
58 PRK12872 ubiA prenyltransferas 92.6 1 2.2E-05 40.7 9.7 43 45-90 169-212 (285)
59 TIGR02235 menA_cyano-plnt 1,4- 89.9 2.8 6.1E-05 38.1 9.6 43 48-92 172-214 (285)
60 PRK13387 1,4-dihydroxy-2-napht 89.3 2.6 5.6E-05 39.0 9.1 49 43-93 195-243 (317)
61 PRK07419 1,4-dihydroxy-2-napht 89.0 3.1 6.8E-05 38.2 9.3 41 48-90 185-225 (304)
62 TIGR01474 ubiA_proteo 4-hydrox 88.9 8.1 0.00018 35.0 11.9 36 43-78 166-202 (281)
63 PLN02922 prenyltransferase 88.9 2.8 6E-05 38.8 8.9 45 44-90 195-239 (315)
64 PRK13592 ubiA prenyltransferas 88.3 4.2 9E-05 37.2 9.4 42 181-223 57-101 (299)
65 COG0382 UbiA 4-hydroxybenzoate 88.0 8.8 0.00019 34.8 11.5 33 181-213 58-91 (289)
66 TIGR01475 ubiA_other putative 88.0 7 0.00015 35.3 10.8 34 44-77 165-199 (282)
67 PRK12847 ubiA 4-hydroxybenzoat 87.9 9.3 0.0002 34.6 11.6 37 42-78 170-207 (285)
68 PRK12884 ubiA prenyltransferas 87.8 4.7 0.0001 36.3 9.6 31 181-212 48-78 (279)
69 PLN00012 chlorophyll synthetas 87.6 4.8 0.0001 38.2 9.8 31 48-78 263-294 (375)
70 PRK07566 bacteriochlorophyll/c 87.5 4.4 9.5E-05 37.4 9.3 30 49-78 201-231 (314)
71 TIGR00751 menA 1,4-dihydroxy-2 87.3 4.9 0.00011 36.5 9.4 42 48-91 175-216 (284)
72 PRK12871 ubiA prenyltransferas 87.2 9.9 0.00022 34.8 11.4 35 44-78 182-217 (297)
73 PRK12888 ubiA prenyltransferas 87.0 14 0.0003 33.6 12.2 35 44-78 166-201 (284)
74 PRK12886 ubiA prenyltransferas 86.8 3.9 8.5E-05 37.3 8.5 33 46-78 171-204 (291)
75 PRK13106 ubiA prenyltransferas 86.5 3.5 7.5E-05 37.9 8.0 35 43-77 183-218 (300)
76 PRK12882 ubiA prenyltransferas 85.7 5 0.00011 36.1 8.6 32 47-78 167-199 (276)
77 PRK09573 (S)-2,3-di-O-geranylg 84.9 4.9 0.00011 36.3 8.1 31 47-77 164-195 (279)
78 PRK06080 1,4-dihydroxy-2-napht 84.5 7.3 0.00016 35.3 9.1 43 46-91 177-220 (293)
79 PRK12392 bacteriochlorophyll c 84.4 4.5 9.7E-05 37.7 7.8 33 45-77 188-221 (331)
80 TIGR02056 ChlG chlorophyll syn 84.2 8.6 0.00019 35.3 9.5 39 48-89 194-233 (306)
81 PRK13595 ubiA prenyltransferas 82.9 14 0.00031 33.7 10.1 23 182-204 59-81 (292)
82 TIGR01476 chlor_syn_BchG bacte 82.8 9.3 0.0002 34.5 9.1 36 49-87 173-209 (283)
83 PRK12848 ubiA 4-hydroxybenzoat 82.1 30 0.00064 31.3 12.0 36 43-78 168-204 (282)
84 PLN02809 4-hydroxybenzoate non 82.1 9.3 0.0002 34.8 8.7 33 181-213 56-89 (289)
85 PRK12883 ubiA prenyltransferas 81.5 8.2 0.00018 34.7 8.2 31 48-78 165-196 (277)
86 PRK12876 ubiA prenyltransferas 80.5 39 0.00084 31.1 12.1 33 46-78 181-214 (300)
87 PF01040 UbiA: UbiA prenyltran 80.5 12 0.00025 32.7 8.7 34 181-214 34-68 (257)
88 PRK12874 ubiA prenyltransferas 79.2 10 0.00022 34.6 8.0 35 44-78 174-209 (291)
89 PRK12324 phosphoribose diphosp 78.8 13 0.00027 34.1 8.4 19 183-201 59-77 (295)
90 PRK12870 ubiA 4-hydroxybenzoat 78.4 17 0.00038 33.0 9.3 37 43-79 172-209 (290)
91 PRK12878 ubiA 4-hydroxybenzoat 74.8 58 0.0013 30.0 11.8 35 44-78 199-234 (314)
92 PRK12887 ubiA tocopherol phyty 73.9 73 0.0016 29.3 14.2 24 188-212 71-94 (308)
93 PRK12873 ubiA prenyltransferas 71.7 77 0.0017 29.0 11.6 34 45-78 178-212 (294)
94 PRK12895 ubiA prenyltransferas 71.2 76 0.0016 28.9 11.4 35 43-77 165-200 (286)
95 PRK05951 ubiA prenyltransferas 70.4 31 0.00067 31.5 8.8 35 48-84 182-216 (296)
96 PRK12869 ubiA protoheme IX far 68.4 31 0.00067 31.1 8.3 24 54-77 176-200 (279)
97 PLN02878 homogentisate phytylt 61.9 37 0.0008 30.9 7.3 41 48-91 167-208 (280)
98 TIGR01473 cyoE_ctaB protoheme 61.7 63 0.0014 29.0 9.0 41 181-221 46-90 (280)
99 PRK04375 protoheme IX farnesyl 61.5 54 0.0012 29.9 8.6 39 182-220 56-98 (296)
100 PRK13362 protoheme IX farnesyl 59.9 64 0.0014 29.6 8.8 40 181-220 58-101 (306)
101 PRK08238 hypothetical protein; 56.5 66 0.0014 31.6 8.7 42 182-223 238-283 (479)
102 PLN02776 prenyltransferase 54.1 1.1E+02 0.0025 28.5 9.5 32 181-212 40-72 (341)
103 cd00867 Trans_IPPS Trans-Isopr 43.3 13 0.00028 32.2 1.4 34 181-214 157-200 (236)
104 COG4147 DhlC Predicted symport 37.2 56 0.0012 32.1 4.6 53 40-99 356-408 (529)
105 PRK04214 rbn ribonuclease BN/u 36.4 2.9E+02 0.0063 26.4 9.6 17 48-64 116-132 (412)
106 PF04971 Lysis_S: Lysis protei 36.4 40 0.00087 23.7 2.6 30 40-69 35-64 (68)
107 PF04341 DUF485: Protein of un 34.7 84 0.0018 23.2 4.4 39 30-68 51-89 (91)
108 PRK10581 geranyltranstransfera 33.2 22 0.00048 32.5 1.3 39 181-219 214-263 (299)
109 KOG4112 Signal peptidase subun 29.2 2.5E+02 0.0054 21.2 5.9 45 89-135 33-79 (101)
110 PRK11383 hypothetical protein; 25.3 3.7E+02 0.0081 21.8 8.8 16 184-199 117-132 (145)
111 PRK10299 PhoPQ regulatory prot 23.2 1.1E+02 0.0023 19.9 2.7 17 51-67 19-35 (47)
112 TIGR02748 GerC3_HepT heptapren 21.8 29 0.00064 32.0 -0.1 32 182-213 202-244 (319)
113 PF11990 DUF3487: Protein of u 21.8 4E+02 0.0087 20.9 6.7 40 64-105 8-51 (121)
114 PRK09669 putative symporter Ya 21.2 2.3E+02 0.005 26.8 6.0 15 55-69 343-357 (444)
115 PF07125 DUF1378: Protein of u 20.7 1.9E+02 0.0042 19.4 3.6 25 43-67 14-39 (59)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=1.7e-56 Score=396.19 Aligned_cols=279 Identities=51% Similarity=0.904 Sum_probs=249.6
Q ss_pred HHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHH
Q 022622 16 GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTS 95 (294)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~ 95 (294)
++.+..++|.+...|.++.++.+++..++++++++.+...+||++|+|+||+|||+||+|||++|+++++.....+.++|
T Consensus 2 ~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg 81 (280)
T PLN02878 2 GITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMS 81 (280)
T ss_pred chhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34455677877777788778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHhhcCCccCcHHHHHH
Q 022622 96 LAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFA 175 (294)
Q Consensus 96 l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~ 175 (294)
+.+++.+|++++..++..++++++.||..+||+|+||++++...|++.+.+...++|+|.++.+.++|++..++++.++.
T Consensus 82 ~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~ 161 (280)
T PLN02878 82 FGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFA 161 (280)
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHH
Confidence 99999999887777766777899999987899999999999888877777788889988887778888655555566655
Q ss_pred HHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 022622 176 AAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAF 255 (294)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 255 (294)
..++.++..+++++||++|+||||+.|+||+|+++|+|++.+++..++.++|+..+..+......+.+.....||.+++.
T Consensus 162 ~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~ 241 (280)
T PLN02878 162 TAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILAS 241 (280)
T ss_pred HHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 55777788899999999999999999999999999999999999999999999888888887777777788999999999
Q ss_pred HHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHhhhhcC
Q 022622 256 LLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294 (294)
Q Consensus 256 ~l~~~~~~~d~~~~~~~~~f~~~i~~~~~~~y~~~~~~~ 294 (294)
.+++|.+.+|.+++++..+||++|||+||+||+++|++|
T Consensus 242 ~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~ 280 (280)
T PLN02878 242 ILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280 (280)
T ss_pred HHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999987
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=3.2e-53 Score=387.23 Aligned_cols=287 Identities=32% Similarity=0.557 Sum_probs=230.9
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCC-hHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLT-PKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM 81 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~ 81 (294)
|++||||.. +.++++++.++|.+...+.. ...+...+..++.+.+.+.+.+.+||++|+|+||+|||+||++||++|+
T Consensus 18 ~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rPiasG~ls~ 97 (308)
T PRK12887 18 KFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSR 97 (308)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCcCCcccCH
Confidence 789999999 99999888877754333221 1123333334444444444444499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHh
Q 022622 82 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 161 (294)
Q Consensus 82 ~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~ 161 (294)
++++....++.++++.+++..|+..+.+++ ++.+++++||. ||.|+||+|.+++.++..+.|.+..+|.+......
T Consensus 98 ~~a~~~~~~~~~lal~la~~~~~~~~~~~~-~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~- 173 (308)
T PRK12887 98 RQGQRIVIITGILALILAALLGPWLLITVG-ISLLIGTAYSL--PPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWL- 173 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHcC--CchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999988777664 68889999995 99999999998887766666777677765432211
Q ss_pred hcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622 162 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 241 (294)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (294)
.+++...++..++..++..+++.+++++||++|+||||+.|+||+|+++|+|++.+++..+..++|+..+..+......+
T Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~ 253 (308)
T PRK12887 174 LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTV 253 (308)
T ss_pred HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 22222344555566667778999999999999999999999999999999999999999999999988877766555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHhhhhcC
Q 022622 242 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLIHFLR 294 (294)
Q Consensus 242 ~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~~~~~y~~~~~~~ 294 (294)
....+.++|.+++.++++|.+.+|.+|+++..+|||+|||+||+||+++|++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 254 NPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC 306 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43455589999999999999999999999999999999999999999999987
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.2e-40 Score=296.97 Aligned_cols=258 Identities=16% Similarity=0.120 Sum_probs=193.2
Q ss_pred cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCcc
Q 022622 3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDL 79 (294)
Q Consensus 3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i 79 (294)
.|+.||+-.. +......|..+|.+..+ ++. .+++..++.+++++++|++||+.|+|+|++|+ ++||+|+|++
T Consensus 7 ~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~i 81 (286)
T PRK12895 7 VDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRI 81 (286)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCC
Confidence 3788995555 54444556777754322 221 23445678899999999999999999999996 4999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622 80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 159 (294)
Q Consensus 80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~ 159 (294)
|++||+.+...+.++++.++.++|+.++.++. .+..+...|++ +||+++++|. ++| ...+++. .+++.
T Consensus 82 s~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~-~lG---~~~g~~~-l~g~~ 149 (286)
T PRK12895 82 KMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHI-YMG---SIIGLGV-LAGYL 149 (286)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHH-HHH---HHHHhHH-HHHHH
Confidence 99999999999999999999999999888775 45666677775 7999999985 443 3333332 22333
Q ss_pred HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622 160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 239 (294)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 239 (294)
++.| ..+++...+.+.+...+|+.++|++|++||+|+|+|.|+||+|+++|+|++.++...+++++.......+...+
T Consensus 150 Av~g-~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~- 227 (286)
T PRK12895 150 AVIP-AFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR- 227 (286)
T ss_pred HHcC-CCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 4444 32222233344556678999999999999999999999999999999999988877777777666666665554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCChhhH-HHHHH-HHHHH
Q 022622 240 QLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYM-FIWKL 282 (294)
Q Consensus 240 ~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~-~~f~~-~i~~~ 282 (294)
++ .+..+..+.+.++.+|++.+|++|+++| .+||+ |.|.+
T Consensus 228 ~~---~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~N~~ig 269 (286)
T PRK12895 228 TL---WYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNANSFIG 269 (286)
T ss_pred hH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCHHH
Confidence 33 4567888888999999999999999988 66554 54444
No 4
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=3.1e-38 Score=285.99 Aligned_cols=254 Identities=21% Similarity=0.147 Sum_probs=192.8
Q ss_pred cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCcc
Q 022622 3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDL 79 (294)
Q Consensus 3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i 79 (294)
.|+.||.... ..+|+..|..++.......++. .++++.++.+++++++|++||++|+|+|++|+ |+||+|+|++
T Consensus 13 ~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~i 89 (289)
T PLN02809 13 ARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGAL 89 (289)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCC
Confidence 3778888888 8888877676664211112221 24567899999999999999999999999875 4999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622 80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 159 (294)
Q Consensus 80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~ 159 (294)
|++|++.+..++.++++.+.+.+|+.++.+++ .+.+....||. +||++.++|. +.| ...+++.. +++.
T Consensus 90 s~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~-~lg---~~~~~~~l-~g~~ 157 (289)
T PLN02809 90 TPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLLLVFTYPL------MKRFTFWPQA-FLG---LTFNWGAL-LGWA 157 (289)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HHhcCcchHH-HHH---HHHHHHHH-HHHH
Confidence 99999999999999999999888988887775 56777889995 8999999885 443 33333332 2233
Q ss_pred HhhcCCccCcHHHH-HHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622 160 YVLGRPVVITRPLI-FAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS 238 (294)
Q Consensus 160 ~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~ 238 (294)
.+.|. . +...+ .++....+|+.++|+++++||+|||+|.|+||+|+++|+|+..+++. +...++..+...+...+
T Consensus 158 av~g~-~--~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~~ 233 (289)
T PLN02809 158 AVKGS-L--DPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNAG 233 (289)
T ss_pred HHhCC-C--ChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 44442 2 22222 24555667999999999999999999999999999999997666664 55556666666677666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 022622 239 FQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 278 (294)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~ 278 (294)
.++ .+..++.+.+.++.+|++.+|++|+++|.+.|+.
T Consensus 234 ~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~ 270 (289)
T PLN02809 234 LGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFVS 270 (289)
T ss_pred CcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 665 4446777888899999999999999987666654
No 5
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.1e-38 Score=284.85 Aligned_cols=257 Identities=16% Similarity=0.130 Sum_probs=190.2
Q ss_pred cccccchH-HHHHHHHHHHhHhhcc-ccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCc
Q 022622 3 QFFLFPNS-MYQIVGITSIAILPLQ-SFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGD 78 (294)
Q Consensus 3 ~~~~Rp~~-~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~ 78 (294)
.|+.||+. +++......++..|.. ..+.+++. .++++.++.+++|+++|++||++|+|+|++|+ |+||+|+|+
T Consensus 6 ~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 82 (284)
T PRK12888 6 LRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGA 82 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCC
Confidence 37789944 4433333333444431 11223322 24567899999999999999999999999998 599999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHH
Q 022622 79 LSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ 158 (294)
Q Consensus 79 is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~ 158 (294)
+|++|++.+...+..+++.++..+|+.++.++. ++++....|++ .||+++++|. +++. ..+++.. +++
T Consensus 83 is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~-~lg~---~~~~~~l-~g~ 150 (284)
T PRK12888 83 VSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHA-ILGL---AQAVGPV-GAW 150 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhH-HHHH---HHHHHHH-HHH
Confidence 999999999988888888888888998877775 45667789985 7999999885 4443 2233321 223
Q ss_pred HHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622 159 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS 238 (294)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~ 238 (294)
..+.| .. +...+.+.+...+|+.++|++|++||+|+|+|.|+||+|+++|+|++.++...++.+++++....+...+
T Consensus 151 ~a~~g-~~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~ 227 (284)
T PRK12888 151 IAVTG-TW--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVG 227 (284)
T ss_pred HHHcC-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33334 22 3444455556678999999999999999999999999999999999988777777777777666677777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHH-HHH-HHHH
Q 022622 239 FQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFY-MFIW 280 (294)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~-~f~-~~i~ 280 (294)
.++ .+..+..+.+.++.||++.+|++|+++|. .|| .|.|
T Consensus 228 ~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~ 268 (284)
T PRK12888 228 FGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGF 268 (284)
T ss_pred CcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhH
Confidence 665 44567777788999999999999977665 766 4543
No 6
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=8.1e-38 Score=284.28 Aligned_cols=257 Identities=17% Similarity=0.188 Sum_probs=192.5
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is 80 (294)
|+.||+... ...+...|..+|.+..+ ++ ..++++.++.+++++++|++||++|+|+|++|+ ++||+|+|++|
T Consensus 20 ~L~R~~~~~~~l~~~~~g~~la~~~~~--~~---~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is 94 (300)
T PRK13106 20 RFLRIEQTFFSLPMAYLGAFVAIKGIP--PI---STLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIK 94 (300)
T ss_pred HHHccccHHHHHHHHHHHHHHHcCCCC--CH---HHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcC
Confidence 789998877 77767777888754333 22 124567889999999999999999999999985 48999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHH
Q 022622 81 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY 160 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~ 160 (294)
++|++.+...+.+.++.++..+|+.+..++. .+.+....||. .||+++++|.. ++ ...+++.. .++..
T Consensus 95 ~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~-lg---~~~~~~~~-~G~~a 162 (300)
T PRK13106 95 ISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYH-LA---SIQGLAVF-SGAVA 162 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHH-HH---HHHHHHHH-HHHHH
Confidence 9999998877777777778888988877775 45566788985 79999999964 43 33333321 12223
Q ss_pred hhcCCc-c----CcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHH
Q 022622 161 VLGRPV-V----ITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA 235 (294)
Q Consensus 161 ~~g~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~ 235 (294)
+.|... + .+...+.+.....+|+.++|++|++||+|+|+|.|+||+|+++| |++.++...++..+..+....+.
T Consensus 163 ~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~ 241 (300)
T PRK13106 163 VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDL 241 (300)
T ss_pred HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 334211 0 11222334445567999999999999999999999999999999 88888888888877777777777
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 022622 236 SSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKL 282 (294)
Q Consensus 236 ~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~ 282 (294)
..++++ .|..+..+...++.+|+..++++ +++.+.|..|.|.+
T Consensus 242 ~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~ig 284 (300)
T PRK13106 242 YYGLGP---IAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIYSS 284 (300)
T ss_pred HhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccHHH
Confidence 777765 45567777788999999999887 66667776664433
No 7
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.4e-37 Score=282.53 Aligned_cols=254 Identities=16% Similarity=0.146 Sum_probs=186.4
Q ss_pred cccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC-C-CCCccCCccCH
Q 022622 5 FLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-P-DLPLASGDLSM 81 (294)
Q Consensus 5 ~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~-~-~Rpl~sG~is~ 81 (294)
..||.... ..+|+..|..+|.++.++. ..+++++++.+++++++|++||++|+|+|++|+ + +||+|+|++|+
T Consensus 18 ~~kp~~~~l~~~~~~~g~~lA~~~~~~~-----~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~ 92 (290)
T PRK12870 18 WDKPAGRLILMIPALWAVFLAAHGLPPL-----PLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSV 92 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCH
Confidence 34444455 6678888888885443322 123567889999999999999999999998654 4 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHh
Q 022622 82 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 161 (294)
Q Consensus 82 ~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~ 161 (294)
+|+..+..++.++++.++..+|+.++.+++ .+.+...+||. .||++.++|. +++. ..+++. ..++..+
T Consensus 93 ~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~-~lg~---~~~~~~-l~g~~a~ 160 (290)
T PRK12870 93 KVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQL-VLAI---AWGFAV-LISWSAV 160 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhcccccee-eehH---HHHhHH-HHHHHHH
Confidence 999999999999999999999998887775 56677889995 7999998885 4432 223332 1222233
Q ss_pred hcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622 162 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 241 (294)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (294)
.| .. +...+.+.....+|+.++|++|++||+|+|+|+|+||+|+++|+|++.+++. ++.+........++..+.++
T Consensus 161 ~g-~~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 236 (290)
T PRK12870 161 TG-HL--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL 236 (290)
T ss_pred cC-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH
Confidence 33 22 3444455556678999999999999999999999999999999999887766 34444444445566666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCCChhhHHHHHHH-HHHH
Q 022622 242 VKLVSIIGHSTLAFLLWLRAQTV--DLSNNASTYSFYMF-IWKL 282 (294)
Q Consensus 242 ~~~~~~~~~~i~~~~l~~~~~~~--d~~~~~~~~~f~~~-i~~~ 282 (294)
.|..+..+...++.+|+..+ |.+|++.|+++|+. .|.+
T Consensus 237 ---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g 277 (290)
T PRK12870 237 ---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIG 277 (290)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHH
Confidence 34456666778889999988 66678777666664 4444
No 8
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=3.4e-37 Score=279.44 Aligned_cols=255 Identities=17% Similarity=0.200 Sum_probs=190.7
Q ss_pred cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCCccCCcc
Q 022622 3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPLASGDL 79 (294)
Q Consensus 3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~i 79 (294)
-|+.||+... ......+|..+|.++.+++ . ..++++++.+++++++|++||+.|+|+|++| +|+||+|+|++
T Consensus 6 ~~L~r~~~~~~~~~~~~~g~~la~~~~~~~--~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~i 80 (282)
T TIGR01475 6 LELIKFEHTVFALPFAYAGALLAAKGLPGL--K---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLI 80 (282)
T ss_pred HHHHccccHHHHHHHHHHHHHHhcCCCCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCc
Confidence 3789999888 6666666777775433332 1 2456788999999999999999999999998 46999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622 80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 159 (294)
Q Consensus 80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~ 159 (294)
|+++++.+..++.++++.++..+|+.+..++. .+.+..+.||. +||++.++|+ +.|. ..++.. ..++.
T Consensus 81 s~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~-~~g~---~~~~~~-~~g~~ 148 (282)
T TIGR01475 81 SKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHY-VLGS---TYGLAP-LAGWV 148 (282)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHH-HHHH---HHHHHH-HHHHH
Confidence 99999999988888888888888888776664 45667889995 7999998885 4433 222222 12223
Q ss_pred HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622 160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 239 (294)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 239 (294)
.+.| ..+.....+.+.....+|+.+++++||+||+|+|+|.|+||+|+++|+|++.+....+..+++......+...+.
T Consensus 149 a~~g-~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 227 (282)
T TIGR01475 149 AVIG-TISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGN 227 (282)
T ss_pred HHhC-CccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3333 222113334445556679999999999999999999999999999999999888877777777777666666665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHH-HHHH
Q 022622 240 QLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMF 278 (294)
Q Consensus 240 ~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~-f~~~ 278 (294)
++ .+..+..+....+.++.+..|.+|+++|++ |+.+
T Consensus 228 g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~ 264 (282)
T TIGR01475 228 GY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYA 264 (282)
T ss_pred cH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 55 444555566678889999999988887765 5554
No 9
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.9e-36 Score=273.46 Aligned_cols=266 Identities=17% Similarity=0.188 Sum_probs=187.5
Q ss_pred hHHH-HHHHHHHHhHhhcc----ccC---CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCc
Q 022622 9 NSMY-QIVGITSIAILPLQ----SFA---DLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGD 78 (294)
Q Consensus 9 ~~~~-~~~~~~~~~~~a~~----~~~---~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ 78 (294)
||++ .+....+ +.+|.. ..+ .++ +..+.+..++.+.+|+++|++||+.|+|+|++|+| +||+|+|+
T Consensus 15 ht~Falpfa~~~-~~~a~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 15 YALFSALFLSAS-TVFALSLPEISFSLFSLGG---IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHHHHHHHH-HHHHhccccccCCCcCCCC---HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 7888 6666644 666641 111 112 23356788999999999999999999999999985 99999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHH
Q 022622 79 LSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ 158 (294)
Q Consensus 79 is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~ 158 (294)
+|++|++.+...+.++++.++..+|+.+..++. ++++...+||. +||+++++|. ++|. ..+++. .+++
T Consensus 91 is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~-vLGl---~~~~~~-l~~~ 158 (300)
T PRK12876 91 LSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHW-ILGL---VYYLAI-LMNF 158 (300)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHH-HHHH---HHHHHH-HHHH
Confidence 999999999988888888888899999888885 56777789995 8999999884 4543 223332 1223
Q ss_pred HHhhcCCccCcH--HHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022622 159 KYVLGRPVVITR--PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 236 (294)
Q Consensus 159 ~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~ 236 (294)
.++.|++.++.. ..++......+|+.++|++|++||+|+|||.|+||+|+++|++++.++...++.+....+...+..
T Consensus 159 ~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~ 238 (300)
T PRK12876 159 FAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYF 238 (300)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443221100 111223344467789999999999999999999999999999998778777777777777777777
Q ss_pred hhhhHHHHHHHHHHHHHHHH--HHHHHhhccCCChhhHHHHHHH-HHHHH--HHHHHhhhh
Q 022622 237 SSFQLVKLVSIIGHSTLAFL--LWLRAQTVDLSNNASTYSFYMF-IWKLF--YAEYLLIHF 292 (294)
Q Consensus 237 ~~~~~~~~~~~~~~~i~~~~--l~~~~~~~d~~~~~~~~~f~~~-i~~~~--~~~y~~~~~ 292 (294)
.+.+++ .+..+..+.+.. ..+|.+.+|.++++.|.+||+. .|-+. ++..+..|.
T Consensus 239 ~~l~~~--~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~ 297 (300)
T PRK12876 239 VSNKKI--FYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFL 297 (300)
T ss_pred hhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHc
Confidence 777652 233444333333 3455477777788888887775 44333 344444443
No 10
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=9.3e-37 Score=275.51 Aligned_cols=259 Identities=15% Similarity=0.100 Sum_probs=192.5
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~is 80 (294)
|..||.... ..+|...|..++.+..+ +. ...+.++++..++++++|++||+.|+|+|++|+| +||+|+|++|
T Consensus 15 R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is 89 (294)
T PRK12873 15 RWNKPTGRLILLIPAGWSLWLTPSAPP--SL---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKIS 89 (294)
T ss_pred CccccchHHHHHHHHHHHHHHccCCCC--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCC
Confidence 456676666 77788777776643222 21 2245688999999999999999999999998764 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHH
Q 022622 81 MGTGLAITLTLSLTSLAIALSL----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 156 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l~~~l----~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~ 156 (294)
+++|+.+..++..+++.+++.+ |+.+..+++ .+++....||. +||++.++|+ ++|+. .+++. .+
T Consensus 90 ~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~-vlg~~---~a~~~-l~ 157 (294)
T PRK12873 90 LKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQA-ILALC---WGFAV-LI 157 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchH-HHHHH---HHhHH-HH
Confidence 9999999999999998887665 566777764 56667889995 7999999884 55432 23332 12
Q ss_pred HHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022622 157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 236 (294)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~ 236 (294)
++.++.| ..++....++++..+.+|+.++|++|++||+|||+|+|+||+|+++|++ +.+....++.++..++...+..
T Consensus 158 gw~Av~g-~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~ 235 (294)
T PRK12873 158 PWAAAEG-SLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFI 235 (294)
T ss_pred HHHHHhC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 2322223333345666899999999999999999999999999999975 4556666777777777777888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC--hhhH-HHHHHHHHHHHH
Q 022622 237 SSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN--NAST-YSFYMFIWKLFY 284 (294)
Q Consensus 237 ~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~--~~~~-~~f~~~i~~~~~ 284 (294)
.+.++ .|..+..+.+.++.+|++.+|++| +++| +.|.+|.|.+..
T Consensus 236 ~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~~ 283 (294)
T PRK12873 236 AQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGSL 283 (294)
T ss_pred hCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHHH
Confidence 87775 455677777888999999999887 3555 666667776654
No 11
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-36 Score=276.22 Aligned_cols=264 Identities=22% Similarity=0.298 Sum_probs=204.9
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~is 80 (294)
|+.||++.. ..++...|...+.+..++ +...++++++.+++++++|++||+.|+|+||+|+| +||+|||++|
T Consensus 18 r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS 92 (289)
T COG0382 18 RLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVS 92 (289)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCC
Confidence 678888888 888887777777532222 23457789999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHH
Q 022622 81 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY 160 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~ 160 (294)
+++++.+..++.++++.+++.+|+.++.+.+ .+.++.+.|+. +||.+.++|.++ |...+++.. .++..
T Consensus 93 ~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~-~~~~l~~~Y~~------~Kr~~~~~~~~l----g~~~~~~~~-~g~~a 160 (289)
T COG0382 93 VKEALLLAILLLLLGLALALLLNPLAFLLSL-AALVLALAYPF------LKRFTFLPQLVL----GLAFGLGAL-AGAAA 160 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcCCchHHHHH----HHHHHHHHH-HHHHH
Confidence 9999999999999999999999998877774 68889999964 899999998643 333333322 22222
Q ss_pred hhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022622 161 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ 240 (294)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (294)
..| . .+...+++.++..+|+.++|++||+||+|+||+.|+||+|+.+|+|++..++.... .........+...+..
T Consensus 161 ~~~-~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~ 236 (289)
T COG0382 161 VGG-S--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLL 236 (289)
T ss_pred HhC-c--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 323 1 23445566677778999999999999999999999999999999999998887766 3444444445444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHHhh
Q 022622 241 LVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYLLI 290 (294)
Q Consensus 241 ~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~~~~~y~~~ 290 (294)
. ..+..+..+.+..+.+|+..+|.+|++.|++++......-...++..
T Consensus 237 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (289)
T COG0382 237 G--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGL 284 (289)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHHHHHH
Confidence 2 24566777778889999999998889999998887666555555443
No 12
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=5e-36 Score=271.46 Aligned_cols=259 Identities=16% Similarity=0.184 Sum_probs=187.2
Q ss_pred cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCcc
Q 022622 3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDL 79 (294)
Q Consensus 3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i 79 (294)
-|+.||+... ..+|..+|..+|... .+.++. ...+++.++.+++++++|++|||+|+|+|++|+ |+||+|+|++
T Consensus 8 ~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~--~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i 84 (281)
T TIGR01474 8 MRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPL--YLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAV 84 (281)
T ss_pred HccccHHHHHHHHHHHHHHHHHHhcc-cCCCcH--HHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCc
Confidence 3788998888 888988888888542 122111 123557788899999999999999999999765 4899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622 80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 159 (294)
Q Consensus 80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~ 159 (294)
|++|++.+..++..+++.+++.+|+.+..+++ ++.+..+.||. .||++.+++. +.+. ..+++.. .++.
T Consensus 85 s~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~-~~g~---~~~~~~~-~g~~ 152 (281)
T TIGR01474 85 SVRQAILFLLVQLLVALGVLLQLNPLTILLGV-ASLALVATYPF------MKRITYWPQL-VLGL---AFGWGAL-MGWA 152 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhch------hcccccccHH-HHHH---HHHHHHH-HHHH
Confidence 99999999999999999998889998887775 67778999995 7999998884 4432 2222221 1222
Q ss_pred HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622 160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 239 (294)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 239 (294)
.+.| . .+...+.+.....+|+.+++++|++||+|+|+|.|+||+|+++|+|++.... .++.+........+...+.
T Consensus 153 a~~g-~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 228 (281)
T TIGR01474 153 AVTG-D--LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLG-GLYALMILLLALAGLIAGL 228 (281)
T ss_pred HHcC-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHH-HHHHHHHHHHHHHHHHhCC
Confidence 3334 2 2333443445566799999999999999999999999999999999864443 3444433334444444455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHH-HHHHH
Q 022622 240 QLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF-IWKLF 283 (294)
Q Consensus 240 ~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~-i~~~~ 283 (294)
++ .+..+..+.+..+.+++..+|.+|+++|+++|+. .+.+.
T Consensus 229 ~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~ 270 (281)
T TIGR01474 229 GP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKANNYVGL 270 (281)
T ss_pred cH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhHHHH
Confidence 44 4445666667788889888888777766666654 44443
No 13
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=4.5e-36 Score=274.98 Aligned_cols=253 Identities=16% Similarity=0.158 Sum_probs=186.4
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccC---CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFA---DLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASG 77 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG 77 (294)
|+.||++.. ..+|+.+|.++|.+... ..++ ...++++++.+++++++|++|||+|+|+|++++ ++||+++|
T Consensus 38 R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG 114 (314)
T PRK12878 38 RWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLL---WHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSG 114 (314)
T ss_pred ccccchhhHHHHHHHHHHHHHhcccccCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Confidence 566999999 99999999998865311 2332 224567899999999999999999999998766 38999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHH
Q 022622 78 DLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHF 157 (294)
Q Consensus 78 ~is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~ 157 (294)
++|++|+..+..++.++|+.+.+..|+.++.+++ .+.+..+.||. .||++.+++. +.| +..+++.. ++
T Consensus 115 ~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~-~~G---l~~~~~~l-~g 182 (314)
T PRK12878 115 QVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGI-ASLAIVAAYPF------MKRITWWPQF-FLG---LAFSWGAL-MG 182 (314)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhcCCcchH-HHH---HHHHHHHH-HH
Confidence 9999999999999999999988888988877775 57778999995 7999888774 333 22333321 12
Q ss_pred HHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022622 158 QKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 237 (294)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~ 237 (294)
+....| .. +...+.+......|+.+++.++++||+|+|+|+|+||+|+++|++++.+.... +.+......+.+...
T Consensus 183 ~~a~~g-~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~-~~~~~~~~~l~~~~~ 258 (314)
T PRK12878 183 WAAHFG-SL--SLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLF-YGLAVLLMGLAFWLA 258 (314)
T ss_pred HHHHhC-CC--chHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHH-HHHHHHHHHHHHHHh
Confidence 222333 33 33444444556679999999999999999999999999999999999877743 333333334344444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 022622 238 SFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 278 (294)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~ 278 (294)
+.++ .+.++.......+.+|...+|++|++.|+++|+.
T Consensus 259 ~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~ 296 (314)
T PRK12878 259 GVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKS 296 (314)
T ss_pred cCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence 4454 3334444555668899999888888777777764
No 14
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.5e-36 Score=272.44 Aligned_cols=256 Identities=18% Similarity=0.187 Sum_probs=187.5
Q ss_pred cccccchHHH-HHHHHHHHhHhhccc---cCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccC
Q 022622 3 QFFLFPNSMY-QIVGITSIAILPLQS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLAS 76 (294)
Q Consensus 3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~s 76 (294)
.|++||+... +.....+|..+|... ...+++ ...+++.++.+++++++|++||++|+|+|++|+ |+||+||
T Consensus 12 ~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~s 88 (291)
T PRK12874 12 SELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGF---KLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVD 88 (291)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC
Confidence 3789997777 666556666666421 112332 224667889999999999999999999999998 4999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHH
Q 022622 77 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 156 (294)
Q Consensus 77 G~is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~ 156 (294)
|++|++|++.+...+.++++.+.+.+|+.+..+++ ..+.....||+ +||++.++|+ +.+.. .+++. ..
T Consensus 89 G~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~-~~g~~---~~~~~-l~ 156 (291)
T PRK12874 89 GRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PFLIVLGGYSY------FKRFSSLAHL-VLGLS---LGLAP-IA 156 (291)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------hcccccccHH-HHHHH---HHHHH-HH
Confidence 99999999999998888888888888998877774 56667889996 7999999885 44432 22221 12
Q ss_pred HHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022622 157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 236 (294)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~ 236 (294)
++.++.| .. +...+.+.+.+.+|+.++|++|++||+|+|+++|+||+|+++|++++.+..........+.....+..
T Consensus 157 G~~av~g-~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (291)
T PRK12874 157 GVVAVLG-EI--PLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWC 233 (291)
T ss_pred HHHHHcC-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334433 22 33334445556689999999999999999999999999999999999887665555555444444444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHH
Q 022622 237 SSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFI 279 (294)
Q Consensus 237 ~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i 279 (294)
.+..+ .+..+..+.+..+.+|++..+.+|++.|+.||.++
T Consensus 234 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~sn 273 (291)
T PRK12874 234 AHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTLN 273 (291)
T ss_pred hcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44443 23445556677888999998877777888877653
No 15
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.1e-36 Score=271.69 Aligned_cols=257 Identities=18% Similarity=0.125 Sum_probs=188.1
Q ss_pred cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCcc
Q 022622 3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDL 79 (294)
Q Consensus 3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i 79 (294)
.|+.||+... ...+..+|..+|.++.++. ..+.++.++.+++++++|++||++|+|+|++|+ ++||+++|++
T Consensus 12 ~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~-----~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~i 86 (291)
T PRK12886 12 LEMIKFSHTLFALPFAGIGAVLAALGLPGA-----SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLI 86 (291)
T ss_pred HHHhCccchHHHHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCc
Confidence 4789998888 7777777788875433322 124567889999999999999999999999998 4899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622 80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 159 (294)
Q Consensus 80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~ 159 (294)
|++|+..+...+.+.++.++...|+.+..+++ .+......||. .||++.+++. +.++.+...++ .++.
T Consensus 87 s~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~-~~g~~~~~~~l----~g~~ 154 (291)
T PRK12886 87 SKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHV-VLGFCLALAPL----GAWI 154 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHH-HHHHHHHHHHH----HHHH
Confidence 99999988766666666667778998877775 46667899995 7999998884 44433222222 2222
Q ss_pred HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622 160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 239 (294)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 239 (294)
.+.| .. +...+.+.+.+.+|+.++|++|++||+|||+|+|+||+|+++|++++.+.........+...+..+...+.
T Consensus 155 a~~g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (291)
T PRK12886 155 AIRG-TI--ELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGL 231 (291)
T ss_pred HHcC-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333 22 34444445556679999999999999999999999999999999999888766666666655555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCh-hhHHH-HHHHHHHH
Q 022622 240 QLVKLVSIIGHSTLAFLLWLRAQTVDLSNN-ASTYS-FYMFIWKL 282 (294)
Q Consensus 240 ~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~-~~~~~-f~~~i~~~ 282 (294)
++ .|..+..+....+.++++..+.+|+ +.|++ |..++|.+
T Consensus 232 ~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~ 273 (291)
T PRK12886 232 GP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYIS 273 (291)
T ss_pred cH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHHH
Confidence 54 3444555556666688888888874 46766 55566655
No 16
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=7.1e-36 Score=270.68 Aligned_cols=255 Identities=16% Similarity=0.156 Sum_probs=183.6
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is 80 (294)
|..||+... ..+|...|..+|.+..++. ...++++++.+++++++|++||++|+|+|++++ |+||+|||++|
T Consensus 13 R~~kp~~~~l~~~p~~~g~~la~~~~~~~-----~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is 87 (282)
T PRK12848 13 RLDKPIGTLLLLWPTLWALWLAADGIPDL-----WVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVS 87 (282)
T ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcC
Confidence 344566666 7778877888775432222 123557788899999999999999999999755 38999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHH
Q 022622 81 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY 160 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~ 160 (294)
++++..++..+.++++.+++.+|+.+..+++ .+.+..++||. .||++.++++ +.+. ..+++. ..++..
T Consensus 88 ~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~-~~g~---~~g~~~-~~g~~a 155 (282)
T PRK12848 88 EKEALALFVVLVLVAFLLVLTLNTLTIWLSV-AALALAWIYPF------MKRYTHLPQV-VLGA---AFGWGI-PMAFAA 155 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HHhcCcccHH-HHHH---HHHHHH-HHHHHH
Confidence 9999999999999999888888998877774 56677889984 6999988885 4332 222222 122222
Q ss_pred hhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022622 161 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ 240 (294)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (294)
. ++. .+...+.+.....+|+...+++|++||+|||+|+|+||+|+++|+|++.+... ++.+........+...+.+
T Consensus 156 ~-~~~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 231 (282)
T PRK12848 156 V-QGS--VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGL-LQLATLALLAWAGWLLGLG 231 (282)
T ss_pred H-hCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHH-HHHHHHHHHHHHHHHhcCc
Confidence 2 322 23444555555667999999999999999999999999999999999877664 3433444444444444544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHH-HHHHHH
Q 022622 241 LVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY-MFIWKL 282 (294)
Q Consensus 241 ~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~-~~i~~~ 282 (294)
+ .+.++..+....+.+|+..+|.+|+++|+++| ++.+.+
T Consensus 232 ~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~~g 271 (282)
T PRK12848 232 W---AYYWGLLVAAALFVYQQKLIRDREREACFKAFLNNNWVG 271 (282)
T ss_pred H---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcHHH
Confidence 4 44456667778889999999988877665555 444444
No 17
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=8.6e-36 Score=269.53 Aligned_cols=259 Identities=20% Similarity=0.221 Sum_probs=182.4
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHH
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG 82 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~ 82 (294)
|+.||++.. +..+...|..+|.+... +. ...++++++.+++++++|++||++|+|+|++|||+||+++|++|++
T Consensus 9 ~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~---~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~ 83 (276)
T PRK12882 9 ELTRPVNAVVAGVAAFIGAFIAGGILS--SP---SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPR 83 (276)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccccc--hH---HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHH
Confidence 689999999 88888888888854321 11 1135678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHhh
Q 022622 83 TGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVL 162 (294)
Q Consensus 83 ~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~ 162 (294)
|++.++..+.++++.+++.+|+.+..++. .+.++.+.||. |+||+++++|..+....|....+| + ...
T Consensus 84 ~a~~~~~~l~~~g~~~~~~l~~~~~~~~~-~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g-----~-~~~ 151 (276)
T PRK12882 84 GALAFSILLFAAGVALAFLLPPLCLAIAL-FNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFG-----G-AAV 151 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHH-----H-HHh
Confidence 99999999999999999989988877764 56667889995 579999888864322222221111 1 222
Q ss_pred cCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 022622 163 GRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLV 242 (294)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (294)
+.. .....+.+.....+++.++|++||+||+|+|+++|+||+|+++|+|++.++...................+.++
T Consensus 152 ~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~- 228 (276)
T PRK12882 152 GTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGL- 228 (276)
T ss_pred ccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-
Confidence 311 11222333444456788999999999999999999999999999999988876655544333332222233333
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhccCCChhhHHHHH-HHHHHHHH
Q 022622 243 KLVSIIGHSTL-AFLLWLRAQTVDLSNNASTYSFY-MFIWKLFY 284 (294)
Q Consensus 243 ~~~~~~~~~i~-~~~l~~~~~~~d~~~~~~~~~f~-~~i~~~~~ 284 (294)
.|.....+. +..+.++.+..|.+|++.|+++| .+.|-+..
T Consensus 229 --~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~g~~ 270 (276)
T PRK12882 229 --WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGMFLALA 270 (276)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 333333333 34445566677777877776644 45665543
No 18
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=268.80 Aligned_cols=252 Identities=18% Similarity=0.201 Sum_probs=179.8
Q ss_pred cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622 3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM 81 (294)
Q Consensus 3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~ 81 (294)
-|+.||+++. ...+...|..+|.+..+++ ..+++++++.+++++++|++||++|+|+|++|+|+||+|+|++|+
T Consensus 7 ~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~-----~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~ 81 (279)
T PRK09573 7 FELIRPKNCIGASIGAIIGYLIASNFKIDL-----KGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISL 81 (279)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHccCCcch-----HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCH
Confidence 3789999999 8888888888875432222 124567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHh
Q 022622 82 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 161 (294)
Q Consensus 82 ~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~ 161 (294)
++++.++..+..+++.++..+|+.+..+++ .+.+..++||. ++||++.++|..+.+..|.... .++.++
T Consensus 82 ~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~-----~g~~~~ 150 (279)
T PRK09573 82 KEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFI-----FGGLAV 150 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHH-----HHHHHH
Confidence 999999999999999998888998877775 56677899994 4799998888654333333221 122223
Q ss_pred hcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622 162 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 241 (294)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (294)
.+ ....+.+.....+|+.+++++||+||+|+|++.|+||+|+++|+|++.++.....................++
T Consensus 151 ~~-----~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (279)
T PRK09573 151 FN-----VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGI 225 (279)
T ss_pred cc-----chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1222333344456788999999999999999999999999999999988876665544444332222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hccCCChhhHHHHHHH
Q 022622 242 VKLVSIIGHSTLAFLLWLRAQ-TVDLSNNASTYSFYMF 278 (294)
Q Consensus 242 ~~~~~~~~~~i~~~~l~~~~~-~~d~~~~~~~~~f~~~ 278 (294)
.|..+..+....+.++.. ..+.+|++.|++-.+.
T Consensus 226 ---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 260 (279)
T PRK09573 226 ---YYLIVVIICDILFIIAMLILLKNPSIEGASKASKY 260 (279)
T ss_pred ---HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344444445555555533 3455566665555443
No 19
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.7e-35 Score=267.42 Aligned_cols=257 Identities=17% Similarity=0.166 Sum_probs=184.8
Q ss_pred cccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccCH
Q 022622 5 FLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLSM 81 (294)
Q Consensus 5 ~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~ 81 (294)
..||.... ..+|+..|..+|.+.. ..++ ...++++++.+++++++|++|||+|+|+|++|+ ++||+++|++|+
T Consensus 16 ~~kp~~~~l~~~~~~~g~~la~~~~-~~~~---~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~ 91 (285)
T PRK12847 16 LHKPIGILLVFFPTLFGLLLASHSL-LPDI---SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSV 91 (285)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCcc-CCcH---HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCH
Confidence 44444555 7778888888875432 1232 224668889999999999999999999999765 489999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHh
Q 022622 82 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 161 (294)
Q Consensus 82 ~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~ 161 (294)
+|+..+...+.++++.+++.+|+.++.++. .+.+..+.||. .||++.+++. +.+ +..+++.. .++...
T Consensus 92 ~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~Y~~------~Kr~~~~~~~-~~g---~~~~~~~l-~~~~a~ 159 (285)
T PRK12847 92 KQALILLFILLLIALVILLLLNKTTIYLSF-IAVILIVLYPL------MKRFFYWPQL-FLG---FTFNMGIL-MAFAAV 159 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhccc------cccCCcccHH-HHH---HHHHHHHH-HHHHHH
Confidence 999999999999999988888988887775 56777899995 7999988884 333 33333321 222233
Q ss_pred hcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622 162 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 241 (294)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (294)
.| .. +...+.+.....+|+.+++++|++||+|+|+|+|+||+|+++|+|++.++.....+..+...+ .+...+..+
T Consensus 160 ~g-~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~ 235 (285)
T PRK12847 160 QN-QL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLI-LGIISSLHN 235 (285)
T ss_pred cC-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHH-HHHHhcCcH
Confidence 23 32 344455555667899999999999999999999999999999999998887666554443333 344444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCChhhHHH-HHHHHHHHHH
Q 022622 242 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMFIWKLFY 284 (294)
Q Consensus 242 ~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~-f~~~i~~~~~ 284 (294)
.+++++.+....+.+++..+|.+|+++|++ |+.+.+.++.
T Consensus 236 ---~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~l 276 (285)
T PRK12847 236 ---IFYLAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVGLL 276 (285)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHHHHH
Confidence 222344445668888999999888766554 4445655544
No 20
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=3.6e-35 Score=270.15 Aligned_cols=247 Identities=19% Similarity=0.277 Sum_probs=170.6
Q ss_pred ccccchHHHHHHHHHHHhHhhcccc-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHH
Q 022622 4 FFLFPNSMYQIVGITSIAILPLQSF-ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG 82 (294)
Q Consensus 4 ~~~Rp~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~ 82 (294)
|+.||++++..+|+..|.++|.+.. ++.+... ..+..+++...+..+++|++|||+|+|+|++|+|.||+++|++|++
T Consensus 17 ~L~kP~t~l~~~p~~~g~~lA~g~~~~~~~~~~-l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl~~G~is~~ 95 (331)
T PRK12392 17 ELLDPVTWISVFPCLAGGVMASGAMQPTLHDYL-LLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEK 95 (331)
T ss_pred HHHCHHHHHHHHHHHHHHHHHcCCCCCChhHHH-HHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCCCCcCCcCHH
Confidence 6789999995555555566775421 2222111 1122234444556678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHH
Q 022622 83 TGLAITLTLSLTSLAIALSLQS-------PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI 155 (294)
Q Consensus 83 ~a~~~~~~~~~l~l~l~~~l~~-------~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~ 155 (294)
+++.....+..+++.++..++. +.+....+++.+++++||. ||+++||+++.++.. ++ ...++...
T Consensus 96 ~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~-vG---l~~~~~~~- 168 (331)
T PRK12392 96 EALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPA-VG---FSYGFITF- 168 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHH-HH---HHHHHHHH-
Confidence 9999999988888877665542 2222322356789999996 999999998876643 32 22222211
Q ss_pred HHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHH
Q 022622 156 HFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA 235 (294)
Q Consensus 156 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~ 235 (294)
..+....|. .+...+.+.....+|+.+++++||++|+|+|++.|+||+|+++|+|++.++......+..+..+..+.
T Consensus 169 ~~~~a~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~ 245 (331)
T PRK12392 169 LSANALFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAW 245 (331)
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 112233342 23444444556667899999999999999999999999999999999998887666566666666666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 022622 236 SSSFQLVKLVSIIGHSTLAFLLWLRAQTV 264 (294)
Q Consensus 236 ~~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 264 (294)
..+.++ .+.....+.+.++.+|.+..
T Consensus 246 ~~~~~~---~~~~~~~~~~~~~~~q~~l~ 271 (331)
T PRK12392 246 SWGFTV---LMYFILVGLVLNIVIQIQLY 271 (331)
T ss_pred HhcccH---HHHHHHHHHHHHHHHHHHHH
Confidence 666654 23344455566677777764
No 21
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=5.8e-35 Score=265.03 Aligned_cols=216 Identities=20% Similarity=0.247 Sum_probs=162.6
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM 81 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~ 81 (294)
|++||+|+. +.+++..|.+.|.....+ ++. ...++.++++..+.++++|.+|||+|+|+|++|+|+||+++|++|+
T Consensus 5 ~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~ 82 (283)
T TIGR01476 5 ELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISL 82 (283)
T ss_pred EecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCH
Confidence 689999999 999998888887432222 221 1223446778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHH
Q 022622 82 GTGLAITLTLSLTSLAIALSLQSPP-LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY 160 (294)
Q Consensus 82 ~~a~~~~~~~~~l~l~l~~~l~~~~-~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~ 160 (294)
++++....++..+++.++..++.+. ..++ ..+.+.+++||. ||+|+||++++++.. ++..-...++. ....
T Consensus 83 ~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~~~~Ys~--~p~~lk~~~~~g~~~-vg~~~~~~~~~----~~~~ 154 (283)
T TIGR01476 83 REVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVLAVIYSM--PPIKLKRNGWLGPPA-VGLSYEGLPWM----AGHA 154 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhheecC--chhhhccCCCccHHH-HHHHHHHHHHH----HHHH
Confidence 9999999999999988888777665 4444 357778999995 999999999888853 33210011111 1112
Q ss_pred hhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 022622 161 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 232 (294)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~ 232 (294)
..+ . .+...+.......+++.+.+++||+||+|+||++|+||+|+++|+|++++++..+..+.++..+.
T Consensus 155 ~~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 223 (283)
T TIGR01476 155 IFA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223 (283)
T ss_pred HhC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 223 2 23333333444556788899999999999999999999999999999999988777766665543
No 22
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.3e-35 Score=263.91 Aligned_cols=257 Identities=19% Similarity=0.266 Sum_probs=185.7
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHH
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG 82 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~ 82 (294)
|+.||+++. +..+...|.++|.+.. ++ ..+++.+++.+++++++|++||++|+|+|++|||+||+++|++|++
T Consensus 9 ~l~R~~~~~~~~~~~~~g~~la~~~~---~~---~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~ 82 (279)
T PRK12884 9 ELLRPEHGLMAGIAVVLGAIIALGGL---PL---DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRR 82 (279)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHCCCC---ch---HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHH
Confidence 689999999 8888888888875432 21 1235577899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHhh
Q 022622 83 TGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVL 162 (294)
Q Consensus 83 ~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~ 162 (294)
+++.++.++.++++.++..+|+....+.+ ++.+.++.||. ++||+++++|.++....|... ..++.+.
T Consensus 83 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~-----~~g~~~~- 150 (279)
T PRK12884 83 EALLLAILLFILGLIAAYLISPLAFLVVI-LVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTF-----IFGGIAV- 150 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----hhccccchhHHHHHHHHHHHH-----HHHHHHh-
Confidence 99999999999999998888988777764 57778999995 479999888854322112111 1112222
Q ss_pred cCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 022622 163 GRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLV 242 (294)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (294)
++. +...+.+.....+|+.+++++||++|+|||++.|+||+|+++|+|++.++........++...........++
T Consensus 151 ~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 226 (279)
T PRK12884 151 GEL---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI- 226 (279)
T ss_pred CCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-
Confidence 221 1233444445557888999999999999999999999999999999998887766666655444333333343
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhccCCChhhHHHHHHHHHHHHH
Q 022622 243 KLVSIIGHSTLAFLLWLRA-QTVDLSNNASTYSFYMFIWKLFY 284 (294)
Q Consensus 243 ~~~~~~~~~i~~~~l~~~~-~~~d~~~~~~~~~f~~~i~~~~~ 284 (294)
.+.....+....+.+++ +..+.+|+++++++..+.+..+.
T Consensus 227 --~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (279)
T PRK12884 227 --LYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITLTAML 267 (279)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34444445556666665 44566667777777555444433
No 23
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=1.4e-34 Score=265.68 Aligned_cols=216 Identities=21% Similarity=0.240 Sum_probs=162.0
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHH-HHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYF-MEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM 81 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~ 81 (294)
+++||+++. +.+++..|.+.+. . .++..... ...+.++++..++++++|++|||+|+|+|++|+|+||+++|++|+
T Consensus 32 ~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~ 109 (314)
T PRK07566 32 QLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISL 109 (314)
T ss_pred HHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCH
Confidence 578999999 9999887776542 2 22322111 112446677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHh
Q 022622 82 GTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYV 161 (294)
Q Consensus 82 ~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~ 161 (294)
++++.++.++..+++.+++.+|+....+++ .+.+.+++||. ||+++||+++++|..+....|....+ .+..+.
T Consensus 110 ~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l-~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~----~g~~~~ 182 (314)
T PRK07566 110 RWVLYLIAVLTVLGLAVAYLLGPWVFLAAL-LGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWW----AGAAAF 182 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHChHHHHHHH-HHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHH----HHHHHh
Confidence 999999999999999988888988777664 57778999996 89999999988886432212221111 112222
Q ss_pred hcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHH
Q 022622 162 LGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS 230 (294)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~ 230 (294)
.++. .+...+.......+++.+++++||++|+|+||++|+||+|+++|+|++.+++..+..+.++..
T Consensus 183 ~~~~--~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~ 249 (314)
T PRK07566 183 GAGL--PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV 249 (314)
T ss_pred ccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence 2222 233344444455567888999999999999999999999999999999988877766666654
No 24
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.7e-36 Score=260.85 Aligned_cols=264 Identities=16% Similarity=0.091 Sum_probs=207.6
Q ss_pred cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCcc
Q 022622 3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGDL 79 (294)
Q Consensus 3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~i 79 (294)
.|+.||..-+ ..+|+.+..++|.+. +..+.. -.+.++-.|++++|+++|++||..|+|+|++.+| .||++||++
T Consensus 71 mRldkPiGTwLLywPCtWSIamaAda--g~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~l 147 (353)
T KOG1381|consen 71 MRLDKPIGTWLLYWPCTWSIAMAADA--GLLPSI-KMLALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSL 147 (353)
T ss_pred HhcCCCceeeeeecchHHHHHhccCC--Cccchh-HHHHHhcccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCc
Confidence 3778897777 888887767776543 222222 2356688999999999999999999999997664 899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622 80 SMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 159 (294)
Q Consensus 80 s~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~ 159 (294)
|++++..+...+..+|+.+..++|+.+..++. .++..++.|+. +||.++++|. ++ |..+++|.. .++.
T Consensus 148 s~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~-~sl~~v~~ypl------~kr~TY~pq~-vL---gltfnwGAl-lGw~ 215 (353)
T KOG1381|consen 148 SPRQAIGFLGAQLSLGLGILLQLNWYSIALGA-SSLALVITYPL------MKRFTYWPQL-VL---GLTFNWGAL-LGWC 215 (353)
T ss_pred chhHHHHHHHHHHHHhHHHHHhccHHHHHhcc-cccccEEEeeh------hhhcchhHHH-HH---hhhcchhhh-hcch
Confidence 99999999999999999999999999988885 67888899996 8999999985 44 566777653 3455
Q ss_pred HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622 160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 239 (294)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 239 (294)
++.|.. .+...+.+++--..|++.+|++|++||+++|.+.|+||.+.+||+++..++.. +-......+..+|+.+++
T Consensus 216 A~~g~~--~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La~aG~~s~q 292 (353)
T KOG1381|consen 216 ALKGSL--SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLAAAGIASDQ 292 (353)
T ss_pred hhcCcc--ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHHHhhhccCC
Confidence 555532 22233455555557999999999999999999999999999999998877764 344455566778888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHH-HHHHHHHHHH
Q 022622 240 QLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM-FIWKLFYAEY 287 (294)
Q Consensus 240 ~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~-~i~~~~~~~y 287 (294)
.| +++.+..+++.++..|..++|.||+++|+++|. |+|.+++..+
T Consensus 293 ~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~ 338 (353)
T KOG1381|consen 293 TW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFS 338 (353)
T ss_pred Cc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHHHHH
Confidence 87 555668888999999999999999888776665 5666665443
No 25
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1.2e-33 Score=257.60 Aligned_cols=260 Identities=15% Similarity=0.100 Sum_probs=180.4
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is 80 (294)
|++||+++. ..+++..|.++|.+. .+++. .+++++++.+++++++|++|||+|+|+|++|+ |+||+|+|++|
T Consensus 15 ~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is 89 (296)
T PRK04375 15 ALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRIS 89 (296)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcC
Confidence 688999999 999988888888543 23322 24567889999999999999999999999977 69999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622 81 MGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 159 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~ 159 (294)
++|+..++..+.++++.++.. .|+.+..++.+........||. ++||++. +|..+.+..+...++ .++.
T Consensus 90 ~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l----~g~~ 159 (296)
T PRK04375 90 PREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL----IGWA 159 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH----HHHH
Confidence 999999999999999888754 5776666554222335678985 4799997 554444332222111 1222
Q ss_pred HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022622 160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 239 (294)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 239 (294)
.+.| . .+...+++.....+|+..++..++++|+|||++.|+||+|+++|+|++.+.............+........
T Consensus 160 a~~g-~--~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (296)
T PRK04375 160 AVTG-S--LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMA 236 (296)
T ss_pred HhCC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2223 2 244444555566779999999999999999999999999999999998877655544333333322222223
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHhhccCCChhh-HHHHHHHHHHHHH
Q 022622 240 QLVKLVSII-GHSTLAFLLWLRAQTVDLSNNAS-TYSFYMFIWKLFY 284 (294)
Q Consensus 240 ~~~~~~~~~-~~~i~~~~l~~~~~~~d~~~~~~-~~~f~~~i~~~~~ 284 (294)
++ .+.. +....+..+.++++..+.+|+++ .+.|+.++|.+..
T Consensus 237 ~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~~~ 280 (296)
T PRK04375 237 GL---LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYLTL 280 (296)
T ss_pred CH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH
Confidence 43 2322 33344556667888887777665 4666666666543
No 26
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=1.6e-33 Score=254.78 Aligned_cols=261 Identities=14% Similarity=0.132 Sum_probs=180.4
Q ss_pred cccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCcc
Q 022622 3 QFFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDL 79 (294)
Q Consensus 3 ~~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i 79 (294)
.|++||++.. ..++...|..+|.+.. .++. .+++..++.+++++++|++||++|+|+|++|+ |+||+|+|++
T Consensus 6 ~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i 80 (279)
T PRK12869 6 LKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLV 80 (279)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhccCC--CCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCc
Confidence 3688999999 8888888888885432 2322 23456788899999999999999999999987 5999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHH
Q 022622 80 SMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ 158 (294)
Q Consensus 80 s~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~ 158 (294)
|++|+..++..+..+++.++.. +|+.+.....+......+.||. ++||++++ |..+.+..|...+++. +
T Consensus 81 s~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g----~ 150 (279)
T PRK12869 81 NRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG----Y 150 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH----H
Confidence 9999999999999999988877 7876543333344567788995 47999985 5455544443333322 2
Q ss_pred HHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622 159 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS 238 (294)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~ 238 (294)
....| .. +...+.+.+.+.+|+.+.....+.+|+|||+++|+||+|+++|+|++.+................+. .+
T Consensus 151 ~a~~g-~~--~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~ 226 (279)
T PRK12869 151 ASGTG-SL--DLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YY 226 (279)
T ss_pred HHHhC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 22233 22 3344444445556877776667889999999999999999999999988776665544444333333 34
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHhhccCCChhhH-HHHHHHHHHHHHH
Q 022622 239 FQLVKLVSIIGHSTL-AFLLWLRAQTVDLSNNAST-YSFYMFIWKLFYA 285 (294)
Q Consensus 239 ~~~~~~~~~~~~~i~-~~~l~~~~~~~d~~~~~~~-~~f~~~i~~~~~~ 285 (294)
.++ .|..+..+. +..+.++.+..+.+|++.| +.|+.+++.+...
T Consensus 227 ~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~~~ 272 (279)
T PRK12869 227 IGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLALF 272 (279)
T ss_pred ccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Confidence 444 343333332 3345566666665555544 5577788887654
No 27
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.6e-33 Score=253.76 Aligned_cols=260 Identities=17% Similarity=0.223 Sum_probs=183.9
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC-----CCCCccCC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-----PDLPLASG 77 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~-----~~Rpl~sG 77 (294)
+..||+|+. +..|+..|.++|.....++++. ..++++++++++|+++|.+|||+|+|.|+.|+ |+||+++|
T Consensus 9 ~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G 85 (296)
T PRK05951 9 IFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAG 85 (296)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccC
Confidence 458999999 9999999999987554566643 34678899999999999999999976655544 68999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHH
Q 022622 78 DLSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF 153 (294)
Q Consensus 78 ~is~~~a~~~~~~~~~l~l~l----~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~ 153 (294)
++|+++++.....+..+++.+ ....++..+.+++ ++.+.++.||. ||+++|++++ |+..+...+|....+|.
T Consensus 86 ~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~-~~~~~~~~Yt~--~P~~lky~gl-Ge~~v~~~~g~~~vlg~ 161 (296)
T PRK05951 86 IMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLAL-LGVFLWTCYMG--PPFFLKYRWL-GEHLVFYAWSHMLVMGL 161 (296)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHcC--CCcccCCCCc-hHHHHHHHHHHHHHHHH
Confidence 999999998888766655433 3344666666664 68889999995 8999998876 88654433444444443
Q ss_pred HHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 022622 154 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 233 (294)
Q Consensus 154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~ 233 (294)
.+++++.. +...+.......+++...+.+||+||+|+||+.|+||+|+++|+|++ ++.......+|+..+..
T Consensus 162 -----~~~~~~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~ 233 (296)
T PRK05951 162 -----IYVWLGNL--SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQIL 233 (296)
T ss_pred -----HHHHhCcc--cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHH
Confidence 23333332 33333344455567778889999999999999999999999999999 66656666677666554
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 022622 234 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 278 (294)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~ 278 (294)
......+++...+.+++-.......++++..|.++++.|.+.+..
T Consensus 234 ~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 234 LIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML 278 (296)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence 444333332234444444444556667777777666666666655
No 28
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=1.6e-33 Score=252.71 Aligned_cols=256 Identities=17% Similarity=0.175 Sum_probs=176.2
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHH
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG 82 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~ 82 (294)
+.+||.+|+ +..++..|...+.+ ..|..+.. .++++......|.+.|.+||++|+|+|++|+|+||+++|++|++
T Consensus 17 ~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~ 92 (292)
T PRK13595 17 LISRPALWVNTVGTLVTGVWLTGH-LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPG 92 (292)
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcC-cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHH
Confidence 578999999 99999888866643 23332232 24456667788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHH
Q 022622 83 TGLAITLTLSL----TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ 158 (294)
Q Consensus 83 ~a~~~~~~~~~----l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~ 158 (294)
+++.+...+.. +++.+++..|+.+..+.. ++.+++++||. ||.|+|++|++++++.. ..| .+++. +
T Consensus 93 ~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~~l~~~YS~--pPlRlK~rp~l~~l~~~-~~g--~p~~~----~ 162 (292)
T PRK13595 93 EVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYAALFVGYSL--PPLRFKARPFLDGLSNA-AYA--LPLAL----P 162 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHcc--CccchhcCcchhHHHHH-HHH--HHHHH----H
Confidence 99886554433 355667778887776664 67789999995 99999999998776542 122 23221 2
Q ss_pred HHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622 159 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS 238 (294)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~ 238 (294)
..+.|.. .. +.......+|..++|++|++||+|+||+.|+||+|+++|+|++.+++..+++++........ .
T Consensus 163 ~~~~g~~---~~--~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~---~ 234 (292)
T PRK13595 163 ALALGAP---VP--WPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS---R 234 (292)
T ss_pred HHHcCCc---ch--HHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc---c
Confidence 2233421 11 11123445788999999999999999999999999999999999998877765433332211 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHH
Q 022622 239 FQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYAEYL 288 (294)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~~~~~y~ 288 (294)
..+ +...+.......+-+ .|.+..+..+.|..++|..+....+
T Consensus 235 ~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~ 277 (292)
T PRK13595 235 LTA------LALWLICGGMALALW-RRPTPETAHRLYPLSIVTPWIVGTV 277 (292)
T ss_pred hHH------HHHHHHHHHHHHHHh-cCCCHHHHhccchHHHHHhHHHHHH
Confidence 111 111111222222223 5655566777788888876665443
No 29
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=5.4e-33 Score=259.06 Aligned_cols=263 Identities=19% Similarity=0.219 Sum_probs=172.5
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHH-HHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKY-FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM 81 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~ 81 (294)
|++||+++. ..+++..|+... +. .++.+.. ...++.++++..++++++|++|||+|+|+|++|+|+||+++|++++
T Consensus 90 ~L~RP~t~~~~~~~v~~G~~~~-g~-~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~ 167 (375)
T PLN00012 90 QLTKPVTWPPLVWGVLCGAAAS-GN-FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 167 (375)
T ss_pred HHhCHHHHHHHHHHHHHHHHHc-CC-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCH
Confidence 689999999 999998887742 22 2222111 1123557778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHH
Q 022622 82 GTGLAITLTLSLTSLAIALSL-------QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 154 (294)
Q Consensus 82 ~~a~~~~~~~~~l~l~l~~~l-------~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~ 154 (294)
++++.....+..+++.++..+ |+..+.+++ ++.+++++||. ||+++||++++||.. +|......++
T Consensus 168 ~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l-~gi~l~~~YS~--pPl~lKr~~~~G~v~-lG~~~~~lp~--- 240 (375)
T PLN00012 168 NEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL-GGSLLSYIYSA--PPLKLKQNGWIGNYA-LGASYISLPW--- 240 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHhhhhcC--CchhhhHhccHhHHH-HHHHHHHHHH---
Confidence 999987766666665555443 444455553 56778999996 999999999988853 3321111111
Q ss_pred HHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 022622 155 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 234 (294)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~ 234 (294)
+. ...+.| . .+...+.+.+..++++.+++++||+||+|+|++.|+||+|+++|+|++.+++.....+.+...+ +
T Consensus 241 ~~-g~a~~g-~--~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~--~ 314 (375)
T PLN00012 241 WA-GQALFG-T--LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA--G 314 (375)
T ss_pred HH-HHHHcC-C--CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH--H
Confidence 11 122334 2 2344444445556788899999999999999999999999999999998887654444433322 2
Q ss_pred HhhhhhHHHHHHH-HHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHH
Q 022622 235 ASSSFQLVKLVSI-IGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFY 284 (294)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~~~ 284 (294)
+...... ..+. .........+.++.+ ...+|+.++...|...-..++
T Consensus 315 ~l~~~~~--~~y~~~~~~l~l~~l~~~~~-~~~~~p~~~~~~~~~~a~~~~ 362 (375)
T PLN00012 315 YLLAIGK--PYYALALLGLIIPQIFFQFK-YFLPDPVKNDVKYQASAQPFL 362 (375)
T ss_pred HHHHHhH--HHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHH
Confidence 2222111 0111 111122233334433 333588888888876443333
No 30
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=4.2e-33 Score=255.04 Aligned_cols=265 Identities=19% Similarity=0.233 Sum_probs=176.7
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCH
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPK-YFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM 81 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~ 81 (294)
|+.||+++. +.+++..|...+ +. .+++.. .....+.+++++.++++++|.+|||+|+|.|+.|+|+||+++|++|+
T Consensus 21 ~l~RP~~~~~~~~~~~~G~~~~-~~-~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~ 98 (306)
T TIGR02056 21 QLMKPITWIPLIWGVVCGAAAS-GN-FHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISE 98 (306)
T ss_pred HHcChHhhHHHHHHHHHHHHHc-CC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCH
Confidence 689999999 999988877753 22 222211 01113445677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHH
Q 022622 82 GTGLAITLTLSLTSLAIALSLQ-------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 154 (294)
Q Consensus 82 ~~a~~~~~~~~~l~l~l~~~l~-------~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~ 154 (294)
++++.....+..+++.++..+. +..+.+++ ++.+.+++||. ||+++||++++++..+.+..+. .+..
T Consensus 99 ~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~-~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~~-~~~~-- 172 (306)
T TIGR02056 99 PEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLAL-FGSFIAFIYSA--PPLKLKQNGWLGNFALGASYIA-LPWW-- 172 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHHHHcC--ChhhhhhcccHHHHHHHHHHHH-HHHH--
Confidence 9999988888887777665442 44455554 67788999996 9999999998788543222111 1111
Q ss_pred HHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 022622 155 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 234 (294)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~ 234 (294)
+.....| . ++...+......++|+.+.++.||++|+|+|++.|+||+|+++|+|++.+++..+...++.......
T Consensus 173 --~~~a~~g-~--~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~ 247 (306)
T TIGR02056 173 --AGHALFG-E--LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYL 247 (306)
T ss_pred --HHHHHhC-C--CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223 2 2344444444556788899999999999999999999999999999999998877666565554333
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHH
Q 022622 235 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKLFYA 285 (294)
Q Consensus 235 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~i~~~~~~ 285 (294)
......++. . +..........++.+.... |++.....++..-..+++
T Consensus 248 ~~~~~~~~~--~-ll~ll~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 294 (306)
T TIGR02056 248 LAIGENLYA--A-ALVALIIPQITFQDKYFLK-DPLKNDVKYQASAQPFLV 294 (306)
T ss_pred HHhcCcHHH--H-HHHHHHHHHHHHHHHHHHh-ChHhhCcchhhhhhHHHH
Confidence 333333211 1 1122223444455444332 444444555554444443
No 31
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=9.7e-33 Score=250.08 Aligned_cols=261 Identities=17% Similarity=0.117 Sum_probs=183.1
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is 80 (294)
|+.||+++. +.+++..|.++|.+.. +.++. .++++.++.+++++++|++|||+|+|+|++|+ |+||+++|++|
T Consensus 5 ~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is 80 (280)
T TIGR01473 5 QLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRIS 80 (280)
T ss_pred HHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcC
Confidence 789999999 9999888888885432 23322 24567889999999999999999999999876 59999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHH-HHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHH
Q 022622 81 MGTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFL-LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ 158 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l-~~~l~~~~~~~~~~~~~~-~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~ 158 (294)
++++..++..+.++|+.+ ....|+.+..++. .+.+ ..++||. ..||++.+.+ .+.+..|...+++.
T Consensus 81 ~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~-----~lKr~~~~~~-~v~~~~g~~~~l~g----- 148 (280)
T TIGR01473 81 PREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTI-----WLKRRTPQNT-VIGGFAGAVPPLIG----- 148 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcCh-----hhccCCchhH-HHHHHHHHHHHHHH-----
Confidence 999999999999998884 4457887766664 4444 3789994 2799998644 45444443333322
Q ss_pred HHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622 159 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS 238 (294)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~ 238 (294)
....++.. +...+.+.....+|+...+..++++|+||||++|+||+|+++|+|++.+................+....
T Consensus 149 ~~a~~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 226 (280)
T TIGR01473 149 WAAVTGSI--SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG 226 (280)
T ss_pred HHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22233333 3344444455667888887788899999999999999999999999877665554433333333333334
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHhhccCC-Chh-hHHHHHHHHHHHHHH
Q 022622 239 FQLVKLVSI-IGHSTLAFLLWLRAQTVDLS-NNA-STYSFYMFIWKLFYA 285 (294)
Q Consensus 239 ~~~~~~~~~-~~~~i~~~~l~~~~~~~d~~-~~~-~~~~f~~~i~~~~~~ 285 (294)
.++ .|. .+..+.+..+.++++..|.+ |++ +.+.|+.+++.+...
T Consensus 227 ~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~ 273 (280)
T TIGR01473 227 TGW---LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLALL 273 (280)
T ss_pred ccH---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 444 233 34444566777888888766 554 456666677766543
No 32
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=1.5e-31 Score=243.81 Aligned_cols=223 Identities=17% Similarity=0.181 Sum_probs=167.2
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhch--hhhhh--cCCCCCccCCc
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDKV--NKPDLPLASGD 78 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~--~~D~~--n~~~Rpl~sG~ 78 (294)
|+.||+++. +.+|+..|.++|... .++++. ..++.+++.+++|+++|.+|||+|+ |.|+. ++|+||+++|+
T Consensus 8 ~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~ 83 (293)
T PRK06080 8 ELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGG 83 (293)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCC
Confidence 678999999 999999988888532 344432 3466788999999999999999999 46753 55799999999
Q ss_pred cCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHH
Q 022622 79 LSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 154 (294)
Q Consensus 79 is~~~a~~~~~~~~~l~l~l----~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~ 154 (294)
+|+++++..+..+.++++.+ ....+++.+.+++ ++.+.++.||. ||.++|++++ +|+.+....|.....+
T Consensus 84 is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Ys~--~p~~~~~~gl-ge~~~~~~~G~~~~~~-- 157 (293)
T PRK06080 84 ISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGL-LCIAAAILYTG--GPKPYGYTGL-GELFVGVFFGLVIVLG-- 157 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhhhhcC--CCCccCCCCc-HHHHHHHHHHHHHHHH--
Confidence 99999998777776655444 3444666666664 57778999995 8888888876 8864432233332222
Q ss_pred HHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 022622 155 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 234 (294)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~ 234 (294)
..+.+.+. .+...+...+...+++.+.+++||++|+|+||+.|+||+|+++|+|++.++...+..++++..+...
T Consensus 158 ---~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~ 232 (293)
T PRK06080 158 ---TYYLQAGT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLA 232 (293)
T ss_pred ---HHHHhcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHH
Confidence 12233322 2444555556677788999999999999999999999999999999999999999988888777666
Q ss_pred HhhhhhH
Q 022622 235 ASSSFQL 241 (294)
Q Consensus 235 ~~~~~~~ 241 (294)
.....++
T Consensus 233 ~~~~~~~ 239 (293)
T PRK06080 233 LLGLASP 239 (293)
T ss_pred HHhhhhH
Confidence 6555554
No 33
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=1.5e-31 Score=242.03 Aligned_cols=199 Identities=23% Similarity=0.290 Sum_probs=148.6
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHH
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG 82 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~ 82 (294)
|++|||++. ...+...|.++|.+..+++ . ..+.++++.++.++++|++||++|+|+|++|||+||+++|+++++
T Consensus 8 ~l~Rp~~~~~~~~~~~~G~~la~~~~~~~--~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~ 82 (277)
T PRK12883 8 EITRPHNCILAGIVGILGSLVALGGIPPI--K---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRK 82 (277)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHcCCCCcH--H---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHH
Confidence 689999999 8777777788775432222 1 134467788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHhh
Q 022622 83 TGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVL 162 (294)
Q Consensus 83 ~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~ 162 (294)
+++.++.++..+|+.+++.+|+.++.+++ .+...+++||. +.||++.++|..+.+..|.....| +..+
T Consensus 83 ~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g-----~~a~- 150 (277)
T PRK12883 83 AALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYG-----AIAV- 150 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHH-----HHHh-
Confidence 99999999999999888889998877775 56678999996 578888778864432223221111 1112
Q ss_pred cCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHH
Q 022622 163 GRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL 223 (294)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~ 223 (294)
+ .. +...+. ......++.+.++.||+||+|+|++.|+||+|+++|+|++.++.....
T Consensus 151 ~-~~--~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~ 207 (277)
T PRK12883 151 G-RI--GLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG 207 (277)
T ss_pred c-cc--cHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence 2 11 222222 122334566888999999999999999999999999999988765443
No 34
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=1.9e-30 Score=238.14 Aligned_cols=226 Identities=13% Similarity=0.117 Sum_probs=168.4
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC----CCCCccCCc
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK----PDLPLASGD 78 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~----~~Rpl~sG~ 78 (294)
|..||+|+. +..|+..|.++|.....++++. ..++++++++++|.++|.+|||+|.+.|+.++ ++|++++|.
T Consensus 8 ~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ 84 (317)
T PRK13387 8 KLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHG 84 (317)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCC
Confidence 578999999 9999999999986544456643 24667888899999999999999998766554 589999999
Q ss_pred cCHHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHH
Q 022622 79 LSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 154 (294)
Q Consensus 79 is~~~a~~~~~~~~~l~l~----l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~ 154 (294)
+++|+++.....+..++.. +++..|+..+.+++ ++.+.++.||. ||+++||++. ||+.+...+|.....|.
T Consensus 85 ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl-~g~~~~~~Yt~--gP~~l~y~gL-Ge~~v~i~~G~~~v~g~- 159 (317)
T PRK13387 85 LKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGL-ICFAIGILYTG--GPLPLSRMPL-GEIFSGLTMGFGIFLLA- 159 (317)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHhhhhcC--CCcccccCcc-HHHHHHHHHHHHHHHHH-
Confidence 9999999887777666555 66777877766664 68889999995 9999999995 99754433454433332
Q ss_pred HHHHHHhhcCCccCcH------------------HHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHH
Q 022622 155 IHFQKYVLGRPVVITR------------------PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 216 (294)
Q Consensus 155 ~~~~~~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~ 216 (294)
.+++.+..++.. ..+...+...+.+...+..||++|+|+||++|+||+|+++|+|++.
T Consensus 160 ----~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~ 235 (317)
T PRK13387 160 ----VYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGV 235 (317)
T ss_pred ----HHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHH
Confidence 233322211110 0011334444566677999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622 217 RLCVYALFFAYGVSVIVGASSSFQL 241 (294)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (294)
+++..+...+|+..+........++
T Consensus 236 ~l~~~l~~~a~l~~~~~v~~g~lp~ 260 (317)
T PRK13387 236 VLFAILFYASYLAIAVIVLMGYISP 260 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999888887765554443444
No 35
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.8e-30 Score=236.21 Aligned_cols=254 Identities=13% Similarity=0.086 Sum_probs=164.3
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc---------C--CC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN---------K--PD 71 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n---------~--~~ 71 (294)
|++||+++. ...++.+|.++|....+.+++. . +++..+++.++.+++|++|||.|+|.|++| | ++
T Consensus 10 ~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~--~-~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~ 86 (297)
T PRK12871 10 DLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE--L-TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKE 86 (297)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH--H-HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCC
Confidence 678999998 8888778777774211233422 1 232344445555778999999999999865 3 48
Q ss_pred CCccCCccCHHHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhh
Q 022622 72 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQS----PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL 147 (294)
Q Consensus 72 Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~l~~----~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~ 147 (294)
||+++|++|+++++.+.+.+.++|+.++..++. ..+.++ +.+.++++.|+. .||.+.++...+++. .
T Consensus 87 Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p~~~l~G~--~ 157 (297)
T PRK12871 87 RPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYPVAQLLGR--T 157 (297)
T ss_pred CccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------ccccccccHHHHHHH--H
Confidence 999999999999999999998888887766544 233333 345677888884 344432222112221 1
Q ss_pred hhhhHHHHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHH
Q 022622 148 VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY 227 (294)
Q Consensus 148 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~ 227 (294)
..++ ..+.+....| . .+...+....+..+|+.+++++||++|+|||++.|+||+|+++|++++.+....+..+..
T Consensus 158 ~~~~--~~~~g~~~~g-~--~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~ 232 (297)
T PRK12871 158 DFTL--FPAAGYLCYG-Q--PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHF 232 (297)
T ss_pred HHHH--HHHHHHHHhC-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHH
Confidence 1111 1111222333 2 233444445566779999999999999999999999999999999988766554444333
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 022622 228 GVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 278 (294)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~f~~~ 278 (294)
+.. .+...+.++ ..+.....+.+.++.+|.+..+.+|++.|-+-|..
T Consensus 233 l~~--~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 279 (297)
T PRK12871 233 LAA--IFFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPL 279 (297)
T ss_pred HHH--HHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 222 233334443 12233335566778899999988888887665554
No 36
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.98 E-value=3.9e-30 Score=234.89 Aligned_cols=199 Identities=14% Similarity=0.150 Sum_probs=148.2
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is 80 (294)
|++||+++. ..+++..|..+|.++ +.++. ..+.++++..+.++++|++||++|+|+|++++ ++||+|||++|
T Consensus 18 ~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is 92 (306)
T PRK13362 18 QVTKPGIIFGNVISVAGGFFLASKG--HVDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEIS 92 (306)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCC
Confidence 678999999 999998888888433 33422 13456788899999999999999999999754 49999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622 81 MGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 159 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l~-~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~ 159 (294)
+++++.++..+..+|+.+. ...|+.+..+..+.......+||. ++||++.+++. +.+..+...++ .++.
T Consensus 93 ~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~-vgg~~ga~p~l----~G~~ 162 (306)
T PRK13362 93 LGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTL-VGSLSGAMPPV----VGYC 162 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHH-HHHHHHHHHHH----HHHH
Confidence 9999999999999988765 445877655553323345778994 37999997764 44433322221 2222
Q ss_pred HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHH
Q 022622 160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
.+ ++.. +...+.+...+.+|+..++..++++|.|||+++|+||+|+++|+|++.+...
T Consensus 163 a~-~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~ 220 (306)
T PRK13362 163 AV-TGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV 220 (306)
T ss_pred HH-cCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence 33 3332 3445555666778999999999999999999999999999999998876543
No 37
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.97 E-value=3.3e-29 Score=226.54 Aligned_cols=220 Identities=15% Similarity=0.123 Sum_probs=165.1
Q ss_pred cchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhh--hhhc--CCCCCccCCccCH
Q 022622 7 FPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI--DKVN--KPDLPLASGDLSM 81 (294)
Q Consensus 7 Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~--D~~n--~~~Rpl~sG~is~ 81 (294)
||+|+. ++.|+..|.++|.... .+++. ..++++++++++|.++|.+|||+|.+. |+.+ +|.|++++|.+++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 999999 9999999999996553 66643 346688999999999999999999863 6543 4689999999999
Q ss_pred HHHHHHHHHHHHHHH----HHHHHhch------HHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhh
Q 022622 82 GTGLAITLTLSLTSL----AIALSLQS------PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF 151 (294)
Q Consensus 82 ~~a~~~~~~~~~l~l----~l~~~l~~------~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~ 151 (294)
|+++..+..+..++. .+.+..++ +.+.++ +++.+.+++||. ||.++|+++. ||..++..+|.....
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg-~~~~~~~~~Yt~--gP~~l~y~gL-GE~~v~i~~G~l~v~ 152 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG-ALCIAAAITYTV--GSKPYGYAGL-GDISVLVFFGPLAVL 152 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH-HHHHHHhHhhcC--CCCccccCch-HHHHHHHHHHHHHHH
Confidence 999988777665444 44444454 223444 467888999995 9999999997 887654445554444
Q ss_pred HHHHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHH
Q 022622 152 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 231 (294)
Q Consensus 152 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~ 231 (294)
|. .+++.+.. +...++..+...+.+.+.+.+||++|+|+|+++|+||+|+++|+|+++++...+...+|+..+
T Consensus 153 g~-----~yvq~~~~--~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~ 225 (284)
T TIGR00751 153 GT-----QYLQAHRV--DWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF 225 (284)
T ss_pred HH-----HHHhcCCC--CHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence 42 23444433 333343344455677888999999999999999999999999999999999888888887776
Q ss_pred HHHHhhhhhH
Q 022622 232 IVGASSSFQL 241 (294)
Q Consensus 232 ~~~~~~~~~~ 241 (294)
........++
T Consensus 226 ~~~~~~~~p~ 235 (284)
T TIGR00751 226 VFMLATPISW 235 (284)
T ss_pred HHHHHhhchH
Confidence 5544444444
No 38
>PLN02922 prenyltransferase
Probab=99.97 E-value=1.1e-27 Score=219.45 Aligned_cols=224 Identities=20% Similarity=0.225 Sum_probs=162.4
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCCCCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~is 80 (294)
+..||+|+. ++.|+..|.++|....+++++.. .++++++++++|.++|.+|||+|.+ .|+.++..+.-..| |
T Consensus 20 ~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~--s 94 (315)
T PLN02922 20 RAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVG--S 94 (315)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCccc--C
Confidence 568999999 99999999999875545666432 4678999999999999999999987 57654322222234 8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHH--hchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHH
Q 022622 81 MGTGLAITLTLSLTSLA---IALS--LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI 155 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~---l~~~--l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~ 155 (294)
+++.+.....+.+++.. +... .+++.+.++ +++++.+++||. ||+|+||+++ |++.++..+|.....|.|
T Consensus 95 ~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l~v~g~y- 169 (315)
T PLN02922 95 RRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPLATTAFY- 169 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHHHHHHHH-
Confidence 99998877776655543 2212 255555555 478899999995 9999999998 887554444544443332
Q ss_pred HHHHHhhcC---C--c---cCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHH
Q 022622 156 HFQKYVLGR---P--V---VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY 227 (294)
Q Consensus 156 ~~~~~~~g~---~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~ 227 (294)
+++.+ . . .++...+...+...+.+.+.+.+||++|+|+||+.|+||+|+++|+|++.++...+...+|
T Consensus 170 ----~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y 245 (315)
T PLN02922 170 ----LALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLY 245 (315)
T ss_pred ----HHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHH
Confidence 22222 0 0 1233344555666778888999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHhhhhhH
Q 022622 228 GVSVIVGASSSFQL 241 (294)
Q Consensus 228 ~~~~~~~~~~~~~~ 241 (294)
+..+........++
T Consensus 246 ~~~i~~v~~~~~p~ 259 (315)
T PLN02922 246 SLLAALGLLKALPL 259 (315)
T ss_pred HHHHHHHHHhhhhH
Confidence 87776655544443
No 39
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=1.6e-27 Score=217.08 Aligned_cols=222 Identities=18% Similarity=0.155 Sum_probs=165.3
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCCCCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~is 80 (294)
+-.||+|+. ++.|+..|.++|.....++++.. .++++++++++|.++|.+|||+|++ .|+. +++ ...++..+
T Consensus 17 ~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~~~~~~ 91 (304)
T PRK07419 17 AAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-SVVNLTGN 91 (304)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-CcccccCc
Confidence 457999999 99999999999976545677433 4678899999999999999999998 6774 222 23344456
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHH
Q 022622 81 MGTGLAITLTLSLTSL----AIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 156 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l----~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~ 156 (294)
+++.......+..++. .+.+..|++.+.++. ++.+.+++||. ||+++|++++ ||..+.-.+|.+...|.
T Consensus 92 ~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~-~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~--- 164 (304)
T PRK07419 92 KSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVL-LCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFGPLAVAAA--- 164 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH-HHHHHhheccC--CCcccCCCCc-hHHHHHHHHHHHHHHHH---
Confidence 8888877666655544 445556776666664 68889999995 9999999997 99765444555544443
Q ss_pred HHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022622 157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 236 (294)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~ 236 (294)
.+++.+. ++...+...+..++.+.+...+||++|+|+||+.|+||+|+++|+|++.+++..+...+|+..+.....
T Consensus 165 --~yv~t~~--~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~ 240 (304)
T PRK07419 165 --LYSQTPS--WSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL 240 (304)
T ss_pred --HHHhcCC--CCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344443 344444445556667778899999999999999999999999999999999998888888877765555
Q ss_pred hhhhH
Q 022622 237 SSFQL 241 (294)
Q Consensus 237 ~~~~~ 241 (294)
...++
T Consensus 241 g~~p~ 245 (304)
T PRK07419 241 GFWPW 245 (304)
T ss_pred hhhHH
Confidence 44444
No 40
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=7.9e-28 Score=216.61 Aligned_cols=207 Identities=21% Similarity=0.109 Sum_probs=142.6
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHH----hhhhhhhchhhhhhcCCCCCccCCc
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYV----GTVNQVADVEIDKVNKPDLPLASGD 78 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~----~~~Nd~~D~~~D~~n~~~Rpl~sG~ 78 (294)
|.+||++|+ +.+|+..|+.+| ++.+ ++. .++..++++.+. |.+|||+|+|.|+.|++.+.. .|.
T Consensus 6 ~~~rP~~wi~~a~pf~~g~~la-~~~~--~~~-------~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~ 74 (282)
T PRK13105 6 LSSRPISWINTAYPFAAAYLLA-GGEI--DWL-------FVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EGA 74 (282)
T ss_pred HhcccHHHhccHHHHHHHHHHH-CCCC--ChH-------HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCc
Confidence 689999999 999998888888 3222 221 122233344444 455999999999999764332 588
Q ss_pred cCHHHHHHHHHHHH----H-HHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHH
Q 022622 79 LSMGTGLAITLTLS----L-TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF 153 (294)
Q Consensus 79 is~~~a~~~~~~~~----~-l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~ 153 (294)
++++|......... . .++.+....|+.++.++. ++++.++.||. ||+|+|++++.++++..........
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~-~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v--- 148 (282)
T PRK13105 75 VLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLA-VSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPAL--- 148 (282)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHH---
Confidence 99998854333322 2 333334444666666664 68889999996 9999999999655333221111111
Q ss_pred HHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 022622 154 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 232 (294)
Q Consensus 154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~ 232 (294)
.+..++ ++. .++..+.....+.+|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.++++..+.
T Consensus 149 --~G~~~~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~ 222 (282)
T PRK13105 149 --YGLVLA-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA 222 (282)
T ss_pred --HHHHHh-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 112233 432 23444555566677899999999999999999999999999999999999999988887776663
No 41
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.96 E-value=4.8e-27 Score=212.57 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=162.6
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhh--hhhcCCCCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI--DKVNKPDLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~--D~~n~~~Rpl~sG~is 80 (294)
+-.||+|+. ++.|+..|.++|....+++++.. .+++++++++.|.++|.+|||+|.+. |+.+. .+ ..++..+
T Consensus 4 ~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~~-~~~~~~~ 78 (285)
T TIGR02235 4 AAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-HS-IVNLTGS 78 (285)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-CC-cccccCc
Confidence 468999999 99999999999976545666443 45678999999999999999999875 77432 11 2222235
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHH
Q 022622 81 MGTGLAITLTLSLTS----LAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 156 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~----l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~ 156 (294)
+++.......+..++ +.+....+++.+.++. ++++.++.||. ||+++|++++ ||..++..+|.+...+.
T Consensus 79 ~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~-~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~--- 151 (285)
T TIGR02235 79 RSLVFWLANFFLLIGLVGIAALSWRWQITVLALVG-LCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAAA--- 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHHH---
Confidence 677776665555444 3445555665555554 68889999995 9999999998 89765444555544432
Q ss_pred HHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 022622 157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 236 (294)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~ 236 (294)
.+++.+. +++..+...+..++.+.+...+||++|+|+|++.|+||+|+++|+|++.++...+...+|+..+.....
T Consensus 152 --~yvqt~~--~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~ 227 (285)
T TIGR02235 152 --LYAQSQS--FSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG 227 (285)
T ss_pred --HHHhCCc--CcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 344444445566677888899999999999999999999999999999999999998899877765555
Q ss_pred hhhhH
Q 022622 237 SSFQL 241 (294)
Q Consensus 237 ~~~~~ 241 (294)
...+|
T Consensus 228 ~~~p~ 232 (285)
T TIGR02235 228 GFLPW 232 (285)
T ss_pred hhhHH
Confidence 44444
No 42
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.96 E-value=9e-27 Score=208.10 Aligned_cols=223 Identities=17% Similarity=0.215 Sum_probs=163.0
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCC-----CCCcc
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKP-----DLPLA 75 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~--~D~~n~~-----~Rpl~ 75 (294)
+..||||+. ++.|+..|+++|......++ ++-.+++++++++++..+|..|||.|.+ .|.+ +| ++-+.
T Consensus 13 ~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~---~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~-g~~~~~~~g~I~ 88 (303)
T COG1575 13 ELARPKTLPAAIAPVIVGTALAFWYGKSFN---LLVALLALIAAILLQILVNLANDYFDYKKGTDTH-GPDRLKQSGLIV 88 (303)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCC-CCccccccceee
Confidence 578999999 99999999999976644454 3446779999999999999999999987 4643 33 44455
Q ss_pred CCccCHHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhh
Q 022622 76 SGDLSMGTGLAITLTLSLT----SLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF 151 (294)
Q Consensus 76 sG~is~~~a~~~~~~~~~l----~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~ 151 (294)
..+++++..+...+.+... ++.+....|+..+.++ .++.+.+++|+. +|.++++.|+ |++.++..+|.....
T Consensus 89 ~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG~l~v~ 164 (303)
T COG1575 89 RQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFGPLIVL 164 (303)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCCH-HHHHHHHHHHHHHHH
Confidence 5566666666655554333 3333445566645555 478899999996 8999999998 897554345544333
Q ss_pred HHHHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHH
Q 022622 152 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 231 (294)
Q Consensus 152 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~ 231 (294)
+ ..+++.+.. +...+...+.+...+...+..||+||+|+|+|+|++|+|+++|+++++++...++..+|+..+
T Consensus 165 g-----~~yiqt~~~--~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~ 237 (303)
T COG1575 165 G-----AYYIQTGRL--SWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIV 237 (303)
T ss_pred H-----HHHHhcccc--hHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHH
Confidence 3 234554433 344444455666677788899999999999999999999999999999999999988888887
Q ss_pred HHHHhhhhhH
Q 022622 232 IVGASSSFQL 241 (294)
Q Consensus 232 ~~~~~~~~~~ 241 (294)
+........+
T Consensus 238 ~~~i~~~~~~ 247 (303)
T COG1575 238 IFVILGLFPV 247 (303)
T ss_pred HHHHHHhchH
Confidence 6555555554
No 43
>PLN02776 prenyltransferase
Probab=99.96 E-value=1.3e-26 Score=212.43 Aligned_cols=258 Identities=16% Similarity=0.024 Sum_probs=173.6
Q ss_pred cccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcC--CCCCccCCccCH
Q 022622 5 FLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLSM 81 (294)
Q Consensus 5 ~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~ 81 (294)
++||+-.. .......|+.+|.+..+++ ..++++.++.+++++++|++||++|+|+|++|+ ++||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~-----~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAIDL-----PGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 46787777 6666677788885433332 224567889999999999999999999999866 499999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHh-hhhhhhhHHHHHHHH
Q 022622 82 GTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV-FGLVYQFSFFIHFQK 159 (294)
Q Consensus 82 ~~a~~~~~~~~~l~l~l-~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~-~g~~~~~g~~~~~~~ 159 (294)
++|+.+++.+.++|+.+ +..+|+.+..++....++....||. +||++++ |. ++|. .|..-++ +++.
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~-~lG~~~Ga~ppL----~Gw~ 143 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NT-WVGAVVGAIPPL----MGWA 143 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hH-HHHHHHHHHHHH----HHHH
Confidence 99999999999988854 5668988877775323334678995 7999986 43 4432 3322232 2334
Q ss_pred HhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceec--chhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022622 160 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL--GKENVLRLCVYALFFAYGVSVIVGASS 237 (294)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~--G~~~a~~l~~~~~~~~~~~~~~~~~~~ 237 (294)
++.| .. +...+.+...+.+|+........++|.|||++.|++++|+.- |+++++.+....+.+..+.++......
T Consensus 144 Avtg-~~--~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~ 220 (341)
T PLN02776 144 AASG-QL--DAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGV 220 (341)
T ss_pred HHcC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444 33 445555566667899888888888999999999999999965 466665554333333222222222111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-hhhHHHHHHHHHHHHHH
Q 022622 238 SFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN-NASTYSFYMFIWKLFYA 285 (294)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~-~~~~~~f~~~i~~~~~~ 285 (294)
.++ ..+..+..+.+..+.++++..+.+| +...+.|+.+++++...
T Consensus 221 -~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~~l 266 (341)
T PLN02776 221 -TSS--PFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLPAF 266 (341)
T ss_pred -hhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 112 1233444444556777777775544 44667788888887654
No 44
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.96 E-value=2.9e-27 Score=210.75 Aligned_cols=188 Identities=30% Similarity=0.411 Sum_probs=135.8
Q ss_pred HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhh--cCCCCCccCCccCHHHHHHHHHH
Q 022622 13 QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLT 90 (294)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~--n~~~Rpl~sG~is~~~a~~~~~~ 90 (294)
.+.+++.|.+.+.+. ..++. ......++.++.+.++|.+||+.|+|+|+. |+|+||+++|+++++++...+..
T Consensus 4 ~~~~~l~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~ 78 (257)
T PF01040_consen 4 SFLPVLAGLALASGG--PFNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI 78 (257)
T ss_pred HHHHHHHHHHHHHcC--CCCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence 455666653334332 23321 234556667799999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHHhhcCCccCcH
Q 022622 91 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR 170 (294)
Q Consensus 91 ~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~ 170 (294)
+.++++.+++..|+..+.+.. ++.+.++.|| ||.|+||++++++.++....+.... ......++. .+.
T Consensus 79 ~~~l~l~l~~~~~~~~~~~~~-~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~ 146 (257)
T PF01040_consen 79 LLLLGLLLALLLGPWFLLILL-LGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLIL------LGAYAAGGD--PPP 146 (257)
T ss_pred HHHHHHHHHHhcCchhHHHHH-HHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhh------hhhhhcCCc--ccH
Confidence 999999998888888777665 5666779999 7889999999888543221221111 112223322 123
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHH
Q 022622 171 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR 217 (294)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~ 217 (294)
..+....+...+.......+|++|+|+|++.|+||+|+++|++++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 33333333345666777888999999999999999999999999977
No 45
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=6.8e-27 Score=212.35 Aligned_cols=192 Identities=22% Similarity=0.252 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHH
Q 022622 40 LKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLG 118 (294)
Q Consensus 40 ~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~-~~l~~~~~~~~~~~~~~~~ 118 (294)
....++.++.+.++|++||+.|+|+|++|+|+||.++++...+.+.....+...++..+. ...|+..+.+++ ++.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~-~~~~~~ 117 (285)
T PRK12872 39 WLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFI-IPLILG 117 (285)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHH
Confidence 346777889999999999999999999999999988544333333333333334444432 234777666664 567789
Q ss_pred hHhcCCCCcc-ccccccccchhHHHHhhhhhhhhHHHHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhh
Q 022622 119 TAYSVDLPFL-RWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDG 197 (294)
Q Consensus 119 ~~Ys~~~pp~-r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~ 197 (294)
+.||. ||. ++||.|.++|.++...+|....++ ..+..+. .++...+....+...+....+.++|++|+|+
T Consensus 118 ~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~-----~~~~~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~ 188 (285)
T PRK12872 118 ILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLIL-----GVYYYQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEG 188 (285)
T ss_pred HHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHH-----HHHhccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 99996 555 579999889975533343332221 1122222 1233333334445566778899999999999
Q ss_pred hHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022622 198 DKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 241 (294)
Q Consensus 198 D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (294)
|+++|+||+|+++|+|+++++...+....++..+........++
T Consensus 189 D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (285)
T PRK12872 189 DRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPL 232 (285)
T ss_pred HHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 99999999999999999999998888877777765544433333
No 46
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=4.8e-26 Score=205.51 Aligned_cols=210 Identities=20% Similarity=0.224 Sum_probs=132.0
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCC-CChHHHHHHHHHHHHH--HHHHHHHhhhhhhhchhhhhhcCCCCCccCCcc
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSA--VLMNNYVGTVNQVADVEIDKVNKPDLPLASGDL 79 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~--~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~i 79 (294)
|.+||+++. ++.|+..|.++|....++ +++..+ .+++. +..+.+.|.+||++|+|+||.|+|.+. ++.+
T Consensus 13 ~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~-----~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk~~--~r~~ 85 (282)
T PRK12875 13 VLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAV-----ALFAYFLFPANVFLYGVNDVFDADTDELNPKKDR--EREV 85 (282)
T ss_pred HHhCccchHHHHHHHHHHHHHHhccCcccccHHHH-----HHHHHHHHHHHHHHhcchhhhhhhccccCCCccC--CCCc
Confidence 678999999 999999999998654332 343221 22222 223445566899999999999986543 1112
Q ss_pred C--HHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHH
Q 022622 80 S--MGTGLA-ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 156 (294)
Q Consensus 80 s--~~~a~~-~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~ 156 (294)
. .+.+.. .......+++.+....++...... +.+++..+.||. ||+|+|++|+. +..+.+.. . .+. ..
T Consensus 86 ~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS~--pP~rlk~~p~~-~~~~~g~~-~-~~~---~~ 156 (282)
T PRK12875 86 RYRGDRRVLVAVALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYSA--PPLRFKTTPVL-DSLSNGLY-I-LPG---VA 156 (282)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHcC--CCccchhccHH-HHHHHHHH-H-HHH---HH
Confidence 2 122221 222233444444444444333333 356788999995 99999999984 43332221 1 111 01
Q ss_pred HHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 022622 157 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 234 (294)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~ 234 (294)
..+++.+. .++..+ .....+|+.+++++||+||+|+|++.|+||+|+++|+|++.+++..++.++....+..+
T Consensus 157 -~y~~~tg~--~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 157 -AYALVSGS--LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred -HHHHHcCC--CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 12233332 233332 23345788899999999999999999999999999999999888877776655555443
No 47
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.95 E-value=3.8e-26 Score=206.04 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhc
Q 022622 43 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYS 122 (294)
Q Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys 122 (294)
.+.+.+...++|++||++|+|+|++|||+||.+ +++.+..++.+..++|+.+++..|+.. ++ +++.+.++.||
T Consensus 64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS 136 (307)
T PRK13591 64 CIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYS 136 (307)
T ss_pred HHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhc
Confidence 334456678999999999999999999999986 788899999999999999999888753 33 35777899999
Q ss_pred CCC--Cc--cccccccccchhHHHHhhhhhhhhHHHHHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhh
Q 022622 123 VDL--PF--LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGD 198 (294)
Q Consensus 123 ~~~--pp--~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D 198 (294)
.++ +| +|+|+++.+||+.+...+|..+..+ ... ..+ .+ .......++.....++++.+||++|+|+|
T Consensus 137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~----~g~-~~~---~~-~~~~~i~l~~~~~l~~~~iindirDiEGD 207 (307)
T PRK13591 137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI----AGS-YCG---SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGD 207 (307)
T ss_pred CCCCCCCccccccCCCchhHHHHHHHHHHHHHHH----HHh-hhh---hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence 631 24 4789999889975433233211100 000 011 01 11111111111233577789999999999
Q ss_pred HhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 022622 199 KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSS 238 (294)
Q Consensus 199 ~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~ 238 (294)
++.|+||+|+++|++++.++...+...+++..+.......
T Consensus 208 r~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~ 247 (307)
T PRK13591 208 TLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGV 247 (307)
T ss_pred HHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888877765554433
No 48
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=6.9e-25 Score=196.23 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 022622 38 EFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL 117 (294)
Q Consensus 38 ~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~ 117 (294)
+.++..+..++..+++|++|||+|+|+||+|+|+||+|||++|+++++.++..+.++++.+.... .... ...+.
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i-~~~~i 120 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNV-GWFLF 120 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHH
Confidence 34555666778889999999999999999999999999999999999999888877766665443 1121 23345
Q ss_pred HhHh-----cCCCCccccccccccchhHHHHhhhhhh--hhHHHHHH-HHHhhcCCccCcHHHHHHHHHHHHHHHHHHHH
Q 022622 118 GTAY-----SVDLPFLRWKTKPFLAGMCMVTVFGLVY--QFSFFIHF-QKYVLGRPVVITRPLIFAAAIISTISAVMSLL 189 (294)
Q Consensus 118 ~~~Y-----s~~~pp~r~Kr~~~~~~~~v~~~~g~~~--~~g~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (294)
.+.| +. ++||.++.+|+.+....|... +++.+... .....|.+ ......+.+.+...+.++++|+.
T Consensus 121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~ 194 (299)
T PRK13592 121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVC 194 (299)
T ss_pred HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 5666 64 579999999965422223222 11111100 00011211 01111122222333467799999
Q ss_pred ccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 022622 190 KDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 229 (294)
Q Consensus 190 ~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~ 229 (294)
+|++| |||++. .+|+|+++|+|++.+++..+.++..+.
T Consensus 195 KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~ 232 (299)
T PRK13592 195 RKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILT 232 (299)
T ss_pred HhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHH
Confidence 99999 888864 999999999999999987776655443
No 49
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.3e-22 Score=175.88 Aligned_cols=194 Identities=20% Similarity=0.236 Sum_probs=138.5
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~is 80 (294)
++.||+-+. ..+...+|+.+|... ..++. ..+...+|..+..+++|++|++.|+|+|++.+| +||+++|+++
T Consensus 23 ~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~ 97 (304)
T COG0109 23 QLTKPRVISLLLITAFAGMLLAPRG--SINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLIS 97 (304)
T ss_pred HHhCCeeeehHHHHHHHHHHHcccc--cccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccC
Confidence 678998888 888888889888642 22322 246678899999999999999999999999775 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622 81 MGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 159 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l~-~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~ 159 (294)
++|++.++.++.++|..+. ...|+.+-.+++..-++.+.+||.+ +||++.. |.++.|+.|..-++ .++.
T Consensus 98 p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~-NiviGg~aGa~Ppl----iGwa 167 (304)
T COG0109 98 PREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQ-NIVIGGFAGAMPPL----IGWA 167 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCccc-ceeeeecccccccc----ceee
Confidence 9999999999999999877 6778877666665556788999973 6999984 54443333333232 2233
Q ss_pred HhhcCCccCcHHHHHHHHHHHH----HHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHH
Q 022622 160 YVLGRPVVITRPLIFAAAIIST----ISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLC 219 (294)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~ 219 (294)
++.| ..+.+...++...|++. |.++ ++--+|+ +++|+..+|++-|++.+.+-.
T Consensus 168 Avtg-~~~~~a~~Lf~IiF~WtPpHfwALA---l~~~~DY---~~AgiPMlPvv~G~~~t~~~I 224 (304)
T COG0109 168 AVTG-SISLGAILLFAIIFLWTPPHFWALA---LKYKDDY---KAAGIPMLPVVKGERRTKRQI 224 (304)
T ss_pred eeeC-CCCchHHHHHHHHHHhccHHHHHHH---HHHHHHH---HHcCCCcccccccHHHHHHHH
Confidence 4545 23333323333444442 3332 2223455 999999999999999886554
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.84 E-value=5.6e-19 Score=160.25 Aligned_cols=127 Identities=27% Similarity=0.404 Sum_probs=97.5
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~is 80 (294)
|++|||.|. ..+.+.. .+++.+. .+.+. +...++.+++..++++++|++||+.|+|+||+| ||+||++||++|
T Consensus 16 ~L~RP~~w~~nll~~~~-~~~a~~~-~~~~~--~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is 91 (295)
T PRK12324 16 KLLRPKQWIKNLFVFAA-PIFAGNL-LNPGA--LLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVS 91 (295)
T ss_pred HHhCchHHHHHHHHHHH-HHHHHhh-cccch--HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccC
Confidence 689999999 7776554 3444321 22211 222344556667889999999999999999986 679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhH
Q 022622 81 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMC 140 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~ 140 (294)
++++..++.++..+|+.+++.+|+.+..+. ...++..+.||. ++||++.+++++
T Consensus 92 ~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~ 145 (295)
T PRK12324 92 VSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFC 145 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHH
Confidence 999999999999999999888888766655 356778899996 579999876643
No 51
>PRK08238 hypothetical protein; Validated
Probab=99.81 E-value=6.7e-18 Score=162.89 Aligned_cols=179 Identities=25% Similarity=0.307 Sum_probs=126.7
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc--CCCCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~is 80 (294)
|++|||.+. ..+.+. +.+++.+ ..+.+ .+...++.+++..++++++|++||+.|+|+||+| ||+||++||++|
T Consensus 196 ~l~Rp~q~~kn~l~~~-p~l~a~~-~~~~~--~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is 271 (479)
T PRK08238 196 KALRVHQWAKNLLVFV-PLLAAHQ-FGDLQ--ALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALP 271 (479)
T ss_pred HHhCCcHHHHHHHHHH-HHHHhcc-cCChH--HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCC
Confidence 689999999 666554 4555532 22222 1233455677777999999999999999999998 579999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHHH
Q 022622 81 MGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY 160 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l~~~l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~~ 160 (294)
+++|+.++.++.++|+.+++.+|+.+.... +..+++..+||. ++||+++++++ +++ ...++.+.. +..
T Consensus 272 ~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lKr~~~~~~~-~la---~~~~lr~~~--G~~ 339 (479)
T PRK08238 272 IPFGLAAAPLLLLAGLALALALGPAFLLVL-LAYLALTLAYSL-----RLKRKVLVDVL-TLA---ALYTLRIIA--GAA 339 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhH-----HhcCCccccch-HHH---HHHHHHHHH--HHH
Confidence 999999999999999999988888655444 467778899996 57999998875 343 222333221 122
Q ss_pred hhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCC
Q 022622 161 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGF 203 (294)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~ 203 (294)
..+ .+.+.|++. +..+........|...|.+++++.|.
T Consensus 340 a~~----~~~s~wll~-~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 340 AIG----VALSFWLLA-FSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred Hhc----cCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 222 133444322 22234446678999999999988886
No 52
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.24 E-value=1.5e-11 Score=105.14 Aligned_cols=217 Identities=16% Similarity=0.137 Sum_probs=139.5
Q ss_pred ccchHHH-HHHHHHHHhHhhccc--cCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhhcCCCCCccCCccC
Q 022622 6 LFPNSMY-QIVGITSIAILPLQS--FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLPLASGDLS 80 (294)
Q Consensus 6 ~Rp~~~~-~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~is 80 (294)
.||.++. ++.|..-|.++|.-+ ..|++.. ...++.++.+.+|.++|.+|.|+|.. +|++...+|.++..-+.
T Consensus 68 lrpws~sasl~p~~lgsalayrs~~~~d~~l~---~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddrtlvd~il~ 144 (359)
T KOG4581|consen 68 LRPWSFSASLTPTALGSALAYRSHGAEDFRLA---TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRTLVDHILE 144 (359)
T ss_pred hcccccccccchHhhhhHHHHhhccccchhHH---HHHHHHhhheeeecccchhhhhhhhhhccccccccchhHHHHhcC
Confidence 5899999 888998888888532 2344321 12345666778899999999999964 78877778999998888
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHhchH---HHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHH
Q 022622 81 MGTGLAITLTLSLTSLA---IALSLQSP---PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 154 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~---l~~~l~~~---~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~ 154 (294)
+.+...+...++..|-. ....+++. .+.+.-..++--..+|+. -+.+|+... +.+.++..+|. +.+.
T Consensus 145 ~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytg---gigfkyial-gdliili~fgp---iavl 217 (359)
T KOG4581|consen 145 KDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTG---GIGFKYIAL-GDLIILILFGP---IAVL 217 (359)
T ss_pred hhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEec---ccceEEEec-cCEEEEEeech---HHHH
Confidence 88888887777655432 33344442 122222234445677884 345677665 56544333332 2211
Q ss_pred HHHHHHhhcCCccCcHHHHHHHHHHHHHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 022622 155 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 234 (294)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~~~~~~~~~~ 234 (294)
....++.++..+.+... ......-+=+..+.|+.+|.|.||++|+-|+++..|+..+-.++..++...|......+
T Consensus 218 --faf~~q~g~l~~~~l~y--aiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~ 293 (359)
T KOG4581|consen 218 --FAFAIQTGHLAIFPLGY--AIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFA 293 (359)
T ss_pred --HHHHHhcCceeEEeehh--eeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333433322111 11222334466789999999999999999999999999998888878888887665444
Q ss_pred Hh
Q 022622 235 AS 236 (294)
Q Consensus 235 ~~ 236 (294)
.-
T Consensus 294 ~~ 295 (359)
T KOG4581|consen 294 LH 295 (359)
T ss_pred HH
Confidence 33
No 53
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.23 E-value=8e-12 Score=111.69 Aligned_cols=200 Identities=14% Similarity=0.124 Sum_probs=122.1
Q ss_pred ccccchHHH-HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCC--CCCccCCccC
Q 022622 4 FFLFPNSMY-QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLPLASGDLS 80 (294)
Q Consensus 4 ~~~Rp~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~is 80 (294)
|+.||+--. ......+|.++|=+. .++ -.++...+|..++.++.|.+||+++.+.|++.+| +||+++|+++
T Consensus 99 eLsK~rLT~LVV~tt~~gYalap~p-~s~-----~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~is 172 (409)
T KOG1380|consen 99 ELSKPRLTMLVVLTTMTGYALAPGP-FSF-----PTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRIS 172 (409)
T ss_pred HhcccceEEEEeeeccccccccccC-CCc-----chhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccC
Confidence 344554333 333334555555332 222 2346678899999999999999999999998765 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhHhcCCCCccccccccccchhHHHHhhhhhhhhHHHHHHHH
Q 022622 81 MGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQK 159 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l~~~-l~~~~~~~~~~~~~~~~~~Ys~~~pp~r~Kr~~~~~~~~v~~~~g~~~~~g~~~~~~~ 159 (294)
+.+|..++.+....|..+..+ .|+....++..-.++...+|+ ++||... .|..+.++.|.+-|+ +++.
T Consensus 173 p~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihi-inTWvGavVGAIPPL----MGwA 241 (409)
T KOG1380|consen 173 PLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHI-INTWVGAVVGAIPPL----MGWA 241 (409)
T ss_pred hHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhh-hhhHHHHHhccCCcc----chhh
Confidence 999999999988888776544 788766666433455677888 3899877 343322223333332 2233
Q ss_pred HhhcCCccCcHHHHHHHHHHHHHHH--HHHHHccC-CChhhhHhcCCcccceec---chhhHHHHHHHHHHHH
Q 022622 160 YVLGRPVVITRPLIFAAAIISTISA--VMSLLKDI-PDEDGDKQFGFQSISSKL---GKENVLRLCVYALFFA 226 (294)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~D~e~D~~~G~~Tl~v~~---G~~~a~~l~~~~~~~~ 226 (294)
+..| . .++..+.+...+..|.+ -..+..++ .|+ ++.|.|.+++.= -++.+++....++.++
T Consensus 242 Aasg-~--l~~ga~iLa~~LyaWQfPHFnaLS~~lR~DY---s~~GY~Mma~~np~l~rr~alr~s~a~~~L~ 308 (409)
T KOG1380|consen 242 AASG-L--LDPGAMILAGILYAWQFPHFNALSWNLRNDY---SKAGYRMMAVTNPGLCRRVALRYSLAFLPLS 308 (409)
T ss_pred hhcc-C--CCccHHHHHHHHHHhcccchhhhhhhhchhh---hhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence 3333 2 23333333333334433 22233333 344 889999998853 3444555555554443
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=94.04 E-value=0.22 Score=45.49 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHH
Q 022622 40 LKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAIT 88 (294)
Q Consensus 40 ~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~ 88 (294)
++.-+.+....+..+..|+..|.|+|++|+|+.+... +..+.++.+.
T Consensus 179 ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavr--LG~~~~~~l~ 225 (303)
T COG1575 179 LLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVR--LGRKNARKLY 225 (303)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeee--eccHhHHHHH
Confidence 3344555566778889999999999999987554332 4445554433
No 55
>PRK13591 ubiA prenyltransferase; Provisional
Probab=94.04 E-value=0.52 Score=43.28 Aligned_cols=66 Identities=26% Similarity=0.336 Sum_probs=37.3
Q ss_pred hhhhhhchhhhhhcCC-CCCccCCccCHHHHHHHHHHHHHHH---HHHHHHh-----chHHHHHHHHHHHHHHhHhcC
Q 022622 55 TVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSLTS---LAIALSL-----QSPPLIFGLIVWFLLGTAYSV 123 (294)
Q Consensus 55 ~~Nd~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~~~~~~~l~---l~l~~~l-----~~~~~~~~~~~~~~~~~~Ys~ 123 (294)
.+||+.|.|.||.+.. .-|..=| ++.+..+.....+.+ +.....+ .|.....+++.++...+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 6899999999998763 4455334 344443333322221 1111121 233344455677888899995
No 56
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=93.49 E-value=1.3 Score=40.37 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCccCHHHHHHHHHHHHHHHHHHHHH
Q 022622 44 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALS 101 (294)
Q Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~ 101 (294)
++..+...+...+||+.|+|.|++.+ +.-|. ++..+.+..+...+..++..+-..
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~ 227 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAA 227 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHH
Confidence 33445556668999999999999754 34444 344566666666665555444333
No 57
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=93.03 E-value=0.71 Score=41.98 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHHHHHHHHhc
Q 022622 44 LSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ 103 (294)
Q Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~l~ 103 (294)
.+..+...+...+||+-|.|.||++.. |.+|. ++.+|.+..++..+..++......++
T Consensus 167 ~~~~~~~~a~~ii~~irDie~Dr~~G~-~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 167 AAFFLWGMASHAFGAVQDVVADREAGI-ASIAT-VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHHhCcchHhHHHcCC-ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344667789999999999998653 33333 45567777777777666655444444
No 58
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=92.64 E-value=1 Score=40.70 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCccCHHHHHHHHHH
Q 022622 45 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLT 90 (294)
Q Consensus 45 ~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~ 90 (294)
..++....-+.+||.-|+|.||+++ +.-|..-|+ +.+......
T Consensus 169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~ 212 (285)
T PRK12872 169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLI 212 (285)
T ss_pred HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHH
Confidence 3334455666889999999999865 455554453 444444333
No 59
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=89.86 E-value=2.8 Score=38.15 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=27.8
Q ss_pred HHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHH
Q 022622 48 LMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLS 92 (294)
Q Consensus 48 l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~ 92 (294)
+...+....||+-|+|+||.+.++ .++- ++.++.+......+.
T Consensus 172 l~~~~iL~~Nn~rD~e~D~~~Gk~-TL~v-~lG~~~a~~l~~~l~ 214 (285)
T TIGR02235 172 LATTLILFCSHFHQVEDDLAHGKR-SPVV-RLGTKLAAKIVPWVI 214 (285)
T ss_pred HHHHHHHHhcCCccchhHHHcCCc-ceeh-eecHHhHHHHHHHHH
Confidence 555677789999999999987642 2222 344566655444433
No 60
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=89.33 E-value=2.6 Score=38.98 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHH
Q 022622 43 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSL 93 (294)
Q Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~ 93 (294)
.+...+..+.....||+.|+|.||.+.++ .++. ++.++.+......+..
T Consensus 195 slp~g~l~~~ill~Nn~~D~e~D~~~gk~-TL~v-~lG~~~a~~l~~~l~~ 243 (317)
T PRK13387 195 SLPIIFTIANIMLANNLRDLDEDIKNHRY-TLVY-YIGREKGVVLFAILFY 243 (317)
T ss_pred HHHHHHHHHHHHHhcCCccchhHHHcCCe-eeee-eEcHHhHHHHHHHHHH
Confidence 34444555666899999999999987642 2222 3445666554444433
No 61
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=88.99 E-value=3.1 Score=38.22 Aligned_cols=41 Identities=15% Similarity=0.055 Sum_probs=26.0
Q ss_pred HHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHH
Q 022622 48 LMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLT 90 (294)
Q Consensus 48 l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~ 90 (294)
+..+.....||+-|+|+||.+.++ .++- ++.++.+......
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~-TL~v-~lG~~~a~~ly~~ 225 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKR-SPIV-RLGTKRGAQLLPW 225 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCc-ceee-eechHhHHHHHHH
Confidence 445677789999999999987642 2222 3445555544333
No 62
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=88.89 E-value=8.1 Score=34.95 Aligned_cols=36 Identities=25% Similarity=0.176 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhc-CCCCCccCCc
Q 022622 43 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 78 (294)
Q Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 78 (294)
.++.++-...-..+|++.|+|.|++. .|.-|..-|+
T Consensus 166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 44555666677789999999999975 4666766664
No 63
>PLN02922 prenyltransferase
Probab=88.87 E-value=2.8 Score=38.78 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHH
Q 022622 44 LSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLT 90 (294)
Q Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~ 90 (294)
+..-+..+.....||+.|+|.||+++++.... ++.++.+......
T Consensus 195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~~ 239 (315)
T PLN02922 195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVRW 239 (315)
T ss_pred HHHHHHHHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHHH
Confidence 33345556778899999999999987532222 2445555544333
No 64
>PRK13592 ubiA prenyltransferase; Provisional
Probab=88.25 E-value=4.2 Score=37.24 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=26.3
Q ss_pred HHHHHHHHHccCCChhhhHhcCCcccceecc---hhhHHHHHHHHH
Q 022622 181 TISAVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCVYAL 223 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G---~~~a~~l~~~~~ 223 (294)
+.+.+-.++||+.|+|-||.+ +..=|.-=| ++.++..+..+.
T Consensus 57 ~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~ 101 (299)
T PRK13592 57 GFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIV 101 (299)
T ss_pred HHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHH
Confidence 344566799999999999665 444444334 455555554443
No 65
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=88.01 E-value=8.8 Score=34.81 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=24.1
Q ss_pred HHHHHHHHHccCCChhhhHhcCC-cccceecchh
Q 022622 181 TISAVMSLLKDIPDEDGDKQFGF-QSISSKLGKE 213 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~~ 213 (294)
....+...+||+.|+|-||++-+ |.=|.-=|+-
T Consensus 58 ~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~v 91 (289)
T COG0382 58 LARSAGYVINDLADREIDRINPRTKNRPLPSGRV 91 (289)
T ss_pred HHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCC
Confidence 34456678999999999999876 4555555554
No 66
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=88.00 E-value=7 Score=35.33 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCC
Q 022622 44 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 77 (294)
Q Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG 77 (294)
+..++-+..-..+||..|+|.|++.+ |.-|..-|
T Consensus 165 ~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G 199 (282)
T TIGR01475 165 IGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG 199 (282)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence 34445556667899999999998654 56666556
No 67
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=87.89 E-value=9.3 Score=34.58 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622 42 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 78 (294)
Q Consensus 42 ~~l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 78 (294)
..+..++....-...|++.|+|.|++++ |.-|..-|+
T Consensus 170 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 170 LYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 3444556666667899999999999764 556655554
No 68
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=87.78 E-value=4.7 Score=36.26 Aligned_cols=31 Identities=19% Similarity=0.071 Sum_probs=24.8
Q ss_pred HHHHHHHHHccCCChhhhHhcCCcccceecch
Q 022622 181 TISAVMSLLKDIPDEDGDKQFGFQSISSKLGK 212 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 212 (294)
+...+-..+||+.|.|.|++. +++=|..-|+
T Consensus 48 l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 48 FASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 344566789999999999998 6777777775
No 69
>PLN00012 chlorophyll synthetase; Provisional
Probab=87.60 E-value=4.8 Score=38.17 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=23.0
Q ss_pred HHHHHHhhhhhhhchhhhhhc-CCCCCccCCc
Q 022622 48 LMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 78 (294)
Q Consensus 48 l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 78 (294)
+...+....||+-|+|.|++. ++.-|..-|+
T Consensus 263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 455667789999999999975 4566665554
No 70
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=87.52 E-value=4.4 Score=37.37 Aligned_cols=30 Identities=27% Similarity=0.280 Sum_probs=21.8
Q ss_pred HHHHHhhhhhhhchhhhhhc-CCCCCccCCc
Q 022622 49 MNNYVGTVNQVADVEIDKVN-KPDLPLASGD 78 (294)
Q Consensus 49 ~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 78 (294)
...+....||+.|+|.||++ +|.-|..-|+
T Consensus 201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 34556789999999999975 4556665554
No 71
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=87.35 E-value=4.9 Score=36.54 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=26.3
Q ss_pred HHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHH
Q 022622 48 LMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTL 91 (294)
Q Consensus 48 l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~ 91 (294)
+...+....||+.|+|.|+.+.++. ++. ++.++.+......+
T Consensus 175 ~l~~~il~~Nn~~D~~~D~~~Gk~T-l~v-~lG~~~a~~l~~~l 216 (284)
T TIGR00751 175 LLACAVLNINNLRDIPTDARAGKNT-LAV-RLGDARTRMYHQGL 216 (284)
T ss_pred HHHHHHHHHcCcccchhHHHcCCEe-ehh-hcchHhHHHHHHHH
Confidence 3446666799999999999876432 222 34456665544433
No 72
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=87.19 E-value=9.9 Score=34.79 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622 44 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 78 (294)
Q Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 78 (294)
+..++-+..-...||+.|+|.|++++ |.-|+.-|+
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 44455566777999999999999754 567776665
No 73
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=87.00 E-value=14 Score=33.56 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622 44 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 78 (294)
Q Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 78 (294)
+...+-..+-..+|++.|+|.|++.+ |.-|..-|+
T Consensus 166 ~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 166 LAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 34445556677999999999999754 566655554
No 74
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=86.79 E-value=3.9 Score=37.29 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhhhhhchhhhhhc-CCCCCccCCc
Q 022622 46 AVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 78 (294)
Q Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 78 (294)
.++-+.+-..+|++.|+|.|++. .|.-|..-|+
T Consensus 171 ~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 171 VLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 33444555578889999999864 4667776665
No 75
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=86.48 E-value=3.5 Score=37.85 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCC
Q 022622 43 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 77 (294)
Q Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG 77 (294)
.++.++-..+-.++|+..|+|.|++.+ +.-|+.=|
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 445556666677999999999998654 56666445
No 76
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=85.67 E-value=5 Score=36.11 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622 47 VLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 78 (294)
Q Consensus 47 ~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 78 (294)
++...+-..+||+.|+|.|++++ |.-|..-|+
T Consensus 167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~ 199 (276)
T PRK12882 167 ALATLAREIIKDVEDIEGDRAEGARTLPILIGV 199 (276)
T ss_pred HHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence 34445667999999999999765 455554443
No 77
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=84.85 E-value=4.9 Score=36.29 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhhhhchhhhhhcC-CCCCccCC
Q 022622 47 VLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 77 (294)
Q Consensus 47 ~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG 77 (294)
++.+.+-..+||+.|+|.|++++ |.-|..-|
T Consensus 164 f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G 195 (279)
T PRK09573 164 FFSTWSREIVKDIEDIEGDLKENVITLPIKYG 195 (279)
T ss_pred HHHHHHHHHHhhhhhhhhHHHCCCccccHHhh
Confidence 34445566789999999999754 56666555
No 78
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=84.52 E-value=7.3 Score=35.33 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhhhhchhhhhhcCC-CCCccCCccCHHHHHHHHHHH
Q 022622 46 AVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTL 91 (294)
Q Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~~~~~ 91 (294)
..+........||+.|+|.||.+++ .-|. ++.++.+......+
T Consensus 177 ~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l 220 (293)
T PRK06080 177 CGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAAL 220 (293)
T ss_pred HHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHH
Confidence 3445566678999999999998653 3333 23345544444333
No 79
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=84.45 E-value=4.5 Score=37.68 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCC
Q 022622 45 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 77 (294)
Q Consensus 45 ~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG 77 (294)
...+...+-..+||+.|+|.|+... +.-|+.=|
T Consensus 188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G 221 (331)
T PRK12392 188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221 (331)
T ss_pred HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence 3445556667899999999999754 45555434
No 80
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=84.20 E-value=8.6 Score=35.29 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=25.2
Q ss_pred HHHHHHhhhhhhhchhhhhhcC-CCCCccCCccCHHHHHHHHH
Q 022622 48 LMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITL 89 (294)
Q Consensus 48 l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~ 89 (294)
+...+....||+.|+|.|+++. +.-|..-| ++.+.....
T Consensus 194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~~~ 233 (306)
T TIGR02056 194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWICV 233 (306)
T ss_pred HHHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHHHH
Confidence 3455666899999999999765 44454334 444444333
No 81
>PRK13595 ubiA prenyltransferase; Provisional
Probab=82.87 E-value=14 Score=33.74 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=18.6
Q ss_pred HHHHHHHHccCCChhhhHhcCCc
Q 022622 182 ISAVMSLLKDIPDEDGDKQFGFQ 204 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e~D~~~G~~ 204 (294)
.+.....+||+-|+|.|+++-+|
T Consensus 59 ~n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 59 FNLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHHHhhhhhhhhccCCCC
Confidence 45566789999999999977655
No 82
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=82.78 E-value=9.3 Score=34.49 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=23.7
Q ss_pred HHHHHhhhhhhhchhhhhhcC-CCCCccCCccCHHHHHHH
Q 022622 49 MNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAI 87 (294)
Q Consensus 49 ~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~ 87 (294)
...+....||+.|+|.||+++ +.-|..-| .|.+..+
T Consensus 173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG---~~~a~~l 209 (283)
T TIGR01476 173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIG---VKRAAIV 209 (283)
T ss_pred HHHHHHHHHhccchhhHHHcCCcCcceEEc---HHHHHHH
Confidence 345567899999999999864 44555444 3444443
No 83
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=82.09 E-value=30 Score=31.29 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622 43 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 78 (294)
Q Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 78 (294)
.+..++-...-...|++.|+|.|++.+ |.-|..-|.
T Consensus 168 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 168 FLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 344445555666889999999999755 566665554
No 84
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=82.08 E-value=9.3 Score=34.85 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=24.9
Q ss_pred HHHHHHHHHccCCChhhhHhcCC-cccceecchh
Q 022622 181 TISAVMSLLKDIPDEDGDKQFGF-QSISSKLGKE 213 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~~ 213 (294)
+...+-..+||+.|.|-|++..| |+=|..=|+-
T Consensus 56 ~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~i 89 (289)
T PLN02809 56 LLRGAGCTINDLLDRDIDKKVERTKLRPIASGAL 89 (289)
T ss_pred HHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCC
Confidence 34456679999999999998766 5677766753
No 85
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=81.51 E-value=8.2 Score=34.75 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred HHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622 48 LMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 78 (294)
Q Consensus 48 l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 78 (294)
+...+-...||+.|+|.|++.+ |.-|..-|+
T Consensus 165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 3444566789999999999754 566665553
No 86
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=80.53 E-value=39 Score=31.06 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622 46 AVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 78 (294)
Q Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 78 (294)
..+...+-.++.+..|+|.||+++ +.-|..-|.
T Consensus 181 ~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~ 214 (300)
T PRK12876 181 FGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGE 214 (300)
T ss_pred HHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCc
Confidence 333334445778899999999765 455654454
No 87
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=80.52 E-value=12 Score=32.74 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=23.2
Q ss_pred HHHHHHHHHccCCChhhhHhc-CCcccceecchhh
Q 022622 181 TISAVMSLLKDIPDEDGDKQF-GFQSISSKLGKEN 214 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~D~~~-G~~Tl~v~~G~~~ 214 (294)
........+||+.|.|.|+.. +++.-|..-|+-+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 345566789999999999996 3344455444443
No 88
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=79.16 E-value=10 Score=34.57 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhc-CCCCCccCCc
Q 022622 44 LSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 78 (294)
Q Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 78 (294)
+..++-+.+-..+|++.|+|.|++. .|.-|..-|+
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 4445666677789999999999865 4666665554
No 89
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=78.81 E-value=13 Score=34.14 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.8
Q ss_pred HHHHHHHccCCChhhhHhc
Q 022622 183 SAVMSLLKDIPDEDGDKQF 201 (294)
Q Consensus 183 ~~~~~~~~~~~D~e~D~~~ 201 (294)
..+...+||+.|.|.||+.
T Consensus 59 ~sa~y~iND~~D~e~Dr~~ 77 (295)
T PRK12324 59 SSAVYLVNDIRDVEADRLH 77 (295)
T ss_pred HHHHHHHHhHHHHHhhccC
Confidence 3455689999999999996
No 90
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=78.39 E-value=17 Score=33.03 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCcc
Q 022622 43 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDL 79 (294)
Q Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~i 79 (294)
.+..++-..+-..+|++.|+|.|++.. +.-|+.-|+-
T Consensus 172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~ 209 (290)
T PRK12870 172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRY 209 (290)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccc
Confidence 345566667777999999999999754 5556544543
No 91
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=74.80 E-value=58 Score=30.00 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhc-CCCCCccCCc
Q 022622 44 LSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 78 (294)
Q Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 78 (294)
+..++-+..-..++++.|+|.|++. .|.-|..-|+
T Consensus 199 ~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 199 AGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 3444555566677899999999965 4666665565
No 92
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=73.89 E-value=73 Score=29.26 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=18.6
Q ss_pred HHccCCChhhhHhcCCcccceecch
Q 022622 188 LLKDIPDEDGDKQFGFQSISSKLGK 212 (294)
Q Consensus 188 ~~~~~~D~e~D~~~G~~Tl~v~~G~ 212 (294)
.+||+.|+|-|+.+ +++-|..=|+
T Consensus 71 ~iNd~~D~~iD~in-kp~rPiasG~ 94 (308)
T PRK12887 71 GLNQLTDIEIDRIN-KPHLPLAAGE 94 (308)
T ss_pred HHhhhhhHHHHhcC-CCCCCcCCcc
Confidence 39999999999965 4777765555
No 93
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=71.70 E-value=77 Score=29.01 Aligned_cols=34 Identities=24% Similarity=0.142 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCCc
Q 022622 45 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 78 (294)
Q Consensus 45 ~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 78 (294)
+.++-+..-..+-.+.|+|.|++.+ |.-|..-|+
T Consensus 178 ~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 178 ATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence 3444444445677788999999765 667776675
No 94
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=71.19 E-value=76 Score=28.90 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhcC-CCCCccCC
Q 022622 43 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 77 (294)
Q Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG 77 (294)
.++.++-..+-.++.++.|+|.|++.. +.-|.-=|
T Consensus 165 ~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 165 FISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence 334445555556999999999999765 44454334
No 95
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=70.35 E-value=31 Score=31.45 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=23.0
Q ss_pred HHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHH
Q 022622 48 LMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTG 84 (294)
Q Consensus 48 l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a 84 (294)
+........||+.|+|.||++.++ .++. ++.++.+
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~-Tlav-~lG~~~a 216 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIP-TLAV-IFGRRGA 216 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCe-eeee-eEcHhhH
Confidence 334567789999999999987642 2222 3445555
No 96
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=68.40 E-value=31 Score=31.13 Aligned_cols=24 Identities=21% Similarity=0.014 Sum_probs=15.4
Q ss_pred hhhhhhhchhhhhhc-CCCCCccCC
Q 022622 54 GTVNQVADVEIDKVN-KPDLPLASG 77 (294)
Q Consensus 54 ~~~Nd~~D~~~D~~n-~~~Rpl~sG 77 (294)
...|++.|+|.|+.. .|.-|..-|
T Consensus 176 ~~~l~~~d~edd~~~G~~tlpv~~G 200 (279)
T PRK12869 176 IWSLALKYREDYRRAGVPMLPAVVG 200 (279)
T ss_pred HHHHHHHhHHhHHHcCCeecceeec
Confidence 344677899999754 355565545
No 97
>PLN02878 homogentisate phytyltransferase
Probab=61.86 E-value=37 Score=30.86 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=25.6
Q ss_pred HHHHHHhhhhhhhchhhhhhcC-CCCCccCCccCHHHHHHHHHHH
Q 022622 48 LMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTL 91 (294)
Q Consensus 48 l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~~ 91 (294)
+.......+||+-|.|-||+.+ +.-|+. +.++.+...+..+
T Consensus 167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~---lG~~~~~~i~~~l 208 (280)
T PLN02878 167 FFSVVIALFKDIPDVEGDRIFGIRSFSVR---LGQKRVFWLCVNL 208 (280)
T ss_pred HHHHHHHHHhhCcCchhHHHCCCceechh---hChHHHHHHHHHH
Confidence 3344556999999999999754 445543 3345555444333
No 98
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=61.69 E-value=63 Score=29.05 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=25.0
Q ss_pred HHHHHHHHHccCCChhhhHhcCC-cccceecc---hhhHHHHHHH
Q 022622 181 TISAVMSLLKDIPDEDGDKQFGF-QSISSKLG---KENVLRLCVY 221 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G---~~~a~~l~~~ 221 (294)
+...+-..+||+.|.|-|++..+ ++=|..=| ++.+..+...
T Consensus 46 l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~ 90 (280)
T TIGR01473 46 LAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLL 90 (280)
T ss_pred HHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 34446679999999999997543 33344334 3444444433
No 99
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=61.51 E-value=54 Score=29.85 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHHHHHHccCCChhhhHhcCC-cccceecch---hhHHHHHH
Q 022622 182 ISAVMSLLKDIPDEDGDKQFGF-QSISSKLGK---ENVLRLCV 220 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~---~~a~~l~~ 220 (294)
...+-..+||+.|.|-|++..+ ++=|..=|+ +.+..+..
T Consensus 56 ~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~ 98 (296)
T PRK04375 56 VAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGL 98 (296)
T ss_pred HHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence 4446679999999999998643 333433344 44444433
No 100
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=59.93 E-value=64 Score=29.61 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=25.2
Q ss_pred HHHHHHHHHccCCChhhhHhcCC-cccceecch---hhHHHHHH
Q 022622 181 TISAVMSLLKDIPDEDGDKQFGF-QSISSKLGK---ENVLRLCV 220 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~---~~a~~l~~ 220 (294)
+...+-..+||+.|.|-|++..+ +.=|..=|+ +.+..+..
T Consensus 58 l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~ 101 (306)
T PRK13362 58 LVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGL 101 (306)
T ss_pred HHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 34456679999999999997654 233444454 44444443
No 101
>PRK08238 hypothetical protein; Validated
Probab=56.54 E-value=66 Score=31.57 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=26.0
Q ss_pred HHHHHHHHccCCChhhhHhcCC-cccceecch---hhHHHHHHHHH
Q 022622 182 ISAVMSLLKDIPDEDGDKQFGF-QSISSKLGK---ENVLRLCVYAL 223 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~---~~a~~l~~~~~ 223 (294)
...+..++||+-|.|.||+.-+ |.=|..=|+ +.+..+...+.
T Consensus 238 ~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~ 283 (479)
T PRK08238 238 CASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLL 283 (479)
T ss_pred HHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3445668999999999999743 344544444 44444443333
No 102
>PLN02776 prenyltransferase
Probab=54.12 E-value=1.1e+02 Score=28.54 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=22.2
Q ss_pred HHHHHHHHHccCCChhhhHhcCC-cccceecch
Q 022622 181 TISAVMSLLKDIPDEDGDKQFGF-QSISSKLGK 212 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~ 212 (294)
+...+-..+||+.|.|-|++..| +.=|..=|+
T Consensus 40 l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGr 72 (341)
T PLN02776 40 LCAASANTLNQVFEVKNDSKMKRTMRRPLPSGR 72 (341)
T ss_pred HHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCC
Confidence 34456679999999999988665 344444444
No 103
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=43.28 E-value=13 Score=32.20 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=27.9
Q ss_pred HHHHHHHHHccCCChhhhH----------hcCCcccceecchhh
Q 022622 181 TISAVMSLLKDIPDEDGDK----------QFGFQSISSKLGKEN 214 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~D~----------~~G~~Tl~v~~G~~~ 214 (294)
....++.+.+|++|+.+|. +.|+.|+|..+..+.
T Consensus 157 ~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~ 200 (236)
T cd00867 157 ALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARER 200 (236)
T ss_pred HHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHH
Confidence 3556778999999998887 899999999988443
No 104
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=37.23 E-value=56 Score=32.08 Aligned_cols=53 Identities=8% Similarity=0.068 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHHHHHH
Q 022622 40 LKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA 99 (294)
Q Consensus 40 ~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~ 99 (294)
.+...+..++..++-.-+|++|.-+|+.-..++++ +.++....+..+++..++
T Consensus 356 aLstaaGL~l~iasavsHDiY~~vik~~ase~~~v-------~vaRi~~v~~~vva~~lg 408 (529)
T COG4147 356 ALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKEV-------RVARIAVVILGVVAILLG 408 (529)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhCCCCCcccee-------hhHHHHHHHHHHHHHHhe
Confidence 44566667777777888999988777642222332 334444444555554443
No 105
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=36.45 E-value=2.9e+02 Score=26.38 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=10.8
Q ss_pred HHHHHHhhhhhhhchhh
Q 022622 48 LMNNYVGTVNQVADVEI 64 (294)
Q Consensus 48 l~~~a~~~~Nd~~D~~~ 64 (294)
+++.--.++|++++.++
T Consensus 116 ~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 116 LLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 45555567788876543
No 106
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=36.39 E-value=40 Score=23.72 Aligned_cols=30 Identities=7% Similarity=0.093 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhhhhhcC
Q 022622 40 LKALLSAVLMNNYVGTVNQVADVEIDKVNK 69 (294)
Q Consensus 40 ~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~ 69 (294)
.+.+++++++...++..|=|+-+++||.+.
T Consensus 35 aIGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 35 AIGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred hHHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 345677777888999999999999998653
No 107
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=34.70 E-value=84 Score=23.22 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhc
Q 022622 30 DLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN 68 (294)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n 68 (294)
..+...+.++..+.++..+...+...-|..+|...|++.
T Consensus 51 ~~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 51 SLTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 356666677888888888888899999999999888754
No 108
>PRK10581 geranyltranstransferase; Provisional
Probab=33.20 E-value=22 Score=32.54 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=30.5
Q ss_pred HHHHHHHHHccCCChhh-----------hHhcCCcccceecchhhHHHHH
Q 022622 181 TISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLC 219 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~~G~~~a~~l~ 219 (294)
.+..++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+....
T Consensus 214 ~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a 263 (299)
T PRK10581 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_pred HHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHH
Confidence 45667788888888754 5678999999999988776554
No 109
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.19 E-value=2.5e+02 Score=21.17 Aligned_cols=45 Identities=13% Similarity=0.291 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhch-HHHHHHHHHHHHHHhHhcCCCCcccc-ccccc
Q 022622 89 LTLSLTSLAIALSLQS-PPLIFGLIVWFLLGTAYSVDLPFLRW-KTKPF 135 (294)
Q Consensus 89 ~~~~~l~l~l~~~l~~-~~~~~~~~~~~~~~~~Ys~~~pp~r~-Kr~~~ 135 (294)
.+..++|++..+.... ......+.+++++..+-+ +||+++ .|+++
T Consensus 33 ti~aiVg~i~Gf~~Qqls~tvy~vg~~~v~t~li~--LPpwP~y~rn~L 79 (101)
T KOG4112|consen 33 TIGAIVGFIYGFAQQQLSVTVYIVGAGFVFTLLIT--LPPWPWYRRNPL 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhhcCcc
Confidence 3344555555544321 112222234556666666 488876 44443
No 110
>PRK11383 hypothetical protein; Provisional
Probab=25.30 E-value=3.7e+02 Score=21.83 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=11.5
Q ss_pred HHHHHHccCCChhhhH
Q 022622 184 AVMSLLKDIPDEDGDK 199 (294)
Q Consensus 184 ~~~~~~~~~~D~e~D~ 199 (294)
-+..+.|+.||...++
T Consensus 117 gai~vQKn~RD~~~~~ 132 (145)
T PRK11383 117 GAVAVQKNIRDAGINP 132 (145)
T ss_pred HHHHHHhhhhhhhhcc
Confidence 3556899999995543
No 111
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=23.22 E-value=1.1e+02 Score=19.88 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=13.8
Q ss_pred HHHhhhhhhhchhhhhh
Q 022622 51 NYVGTVNQVADVEIDKV 67 (294)
Q Consensus 51 ~a~~~~Nd~~D~~~D~~ 67 (294)
.+..++|.+.|.++|=.
T Consensus 19 lyl~ald~~CDQg~~F~ 35 (47)
T PRK10299 19 LWAQVFNMMCDQDVQFF 35 (47)
T ss_pred HHHHHHHHHhcCCccce
Confidence 67788999999997643
No 112
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=21.78 E-value=29 Score=31.97 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCChh-----------hhHhcCCcccceecchh
Q 022622 182 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKE 213 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~~G~~ 213 (294)
+.+++.+..|+.|+. +|.+.|+.|+|+.+..+
T Consensus 202 lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~ 244 (319)
T TIGR02748 202 VGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAME 244 (319)
T ss_pred HHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhc
No 113
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=21.76 E-value=4e+02 Score=20.91 Aligned_cols=40 Identities=18% Similarity=0.025 Sum_probs=23.1
Q ss_pred hhhhcCCCCCccCCccCHHHHHHHHHHHHHHHH----HHHHHhchH
Q 022622 64 IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSL----AIALSLQSP 105 (294)
Q Consensus 64 ~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l----~l~~~l~~~ 105 (294)
-||.|+ .|.+=+-+|..|....+.+..++++ .+++..+++
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~ 51 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWW 51 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478875 3444445788887766555544443 444455554
No 114
>PRK09669 putative symporter YagG; Provisional
Probab=21.24 E-value=2.3e+02 Score=26.76 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=9.8
Q ss_pred hhhhhhchhhhhhcC
Q 022622 55 TVNQVADVEIDKVNK 69 (294)
Q Consensus 55 ~~Nd~~D~~~D~~n~ 69 (294)
.+.|..|+|+.+..+
T Consensus 343 m~ad~~d~~e~~~G~ 357 (444)
T PRK09669 343 MFSDVVDYEEKRSGR 357 (444)
T ss_pred HHHhhhhhhhhhcCc
Confidence 566777777766544
No 115
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=20.72 E-value=1.9e+02 Score=19.41 Aligned_cols=25 Identities=12% Similarity=0.095 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHh-hhhhhhchhhhhh
Q 022622 43 LLSAVLMNNYVG-TVNQVADVEIDKV 67 (294)
Q Consensus 43 ~l~~~l~~~a~~-~~Nd~~D~~~D~~ 67 (294)
+++++-.-++|+ .+-||+.+++|..
T Consensus 14 vVcaLYLvsGGyk~IRnY~r~Kid~a 39 (59)
T PF07125_consen 14 VVCALYLVSGGYKVIRNYFRRKIDDA 39 (59)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 334444444555 8899998888753
Done!