Query 022622
Match_columns 294
No_of_seqs 231 out of 2017
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 44.4 12 0.00039 33.1 2.6 40 181-220 207-257 (297)
2 3lsn_A Geranyltranstransferase 35.8 7.3 0.00025 34.5 -0.2 40 181-220 214-264 (304)
3 3lom_A Geranyltranstransferase 35.3 7.8 0.00027 34.5 -0.1 40 181-220 221-271 (313)
4 3ts7_A Geranyltranstransferase 34.3 7.4 0.00025 34.8 -0.4 39 182-220 221-270 (324)
5 3kra_B Geranyl diphosphate syn 30.5 47 0.0016 28.7 4.2 42 184-225 74-115 (274)
6 3p8r_A Geranyltranstransferase 29.8 12 0.0004 33.1 0.2 39 182-220 221-270 (302)
7 3p8l_A Geranyltranstransferase 29.7 9.6 0.00033 33.7 -0.4 39 182-220 218-267 (302)
8 4f62_A Geranyltranstransferase 29.2 9.9 0.00034 33.9 -0.4 40 182-221 214-264 (317)
9 2h8o_A Geranyltranstransferase 27.8 11 0.00037 33.9 -0.5 39 182-220 254-303 (335)
10 3uca_A Geranyltranstransferase 26.2 12 0.00042 33.4 -0.4 39 182-220 243-292 (324)
11 3llw_A Geranyltranstransferase 26.1 12 0.00039 33.3 -0.6 40 181-220 221-269 (311)
12 1rqj_A Geranyltranstransferase 23.8 18 0.00063 31.7 0.3 38 182-219 215-263 (299)
13 2j1p_A Geranylgeranyl pyrophos 22.4 15 0.00053 32.1 -0.5 37 181-220 224-260 (293)
14 1rtr_A Geranyltranstransferase 22.0 15 0.00052 32.3 -0.6 40 181-220 209-259 (301)
15 3pde_A Farnesyl-diphosphate sy 20.9 19 0.00064 31.9 -0.3 39 182-220 217-266 (309)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=44.44 E-value=12 Score=33.07 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=25.0
Q ss_pred HHHHHHHHHccCCChhh-----------hHhcCCcccceecchhhHHHHHH
Q 022622 181 TISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
.+..++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....
T Consensus 207 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~ 257 (297)
T 3m0g_A 207 ALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAA 257 (297)
T ss_dssp HHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHH
Confidence 45668889999999865 66789999999999998876654
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=35.84 E-value=7.3 Score=34.50 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=26.9
Q ss_pred HHHHHHHHHccCCChhh-----------hHhcCCcccceecchhhHHHHHH
Q 022622 181 TISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
.+..++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....
T Consensus 214 ~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~ 264 (304)
T 3lsn_A 214 AIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYAL 264 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHH
Confidence 35567788888888765 66789999999999998876654
No 3
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=35.34 E-value=7.8 Score=34.48 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=26.9
Q ss_pred HHHHHHHHHccCCChhh-----------hHhcCCcccceecchhhHHHHHH
Q 022622 181 TISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
....++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....
T Consensus 221 ~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~ 271 (313)
T 3lom_A 221 HIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIA 271 (313)
T ss_dssp HHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHH
Confidence 34556777777777754 66889999999999998876654
No 4
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=34.27 E-value=7.4 Score=34.81 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=25.8
Q ss_pred HHHHHHHHccCCChhh-----------hHhcCCcccceecchhhHHHHHH
Q 022622 182 ISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
...++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....
T Consensus 221 lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~ 270 (324)
T 3ts7_A 221 IGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAE 270 (324)
T ss_dssp HHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHH
Confidence 4456677777777654 77889999999999998876654
No 5
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=30.54 E-value=47 Score=28.69 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=30.7
Q ss_pred HHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHHH
Q 022622 184 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 225 (294)
Q Consensus 184 ~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~~ 225 (294)
.+..+-.|+++.++|.++|+.|.-..+|.+.+....-.++..
T Consensus 74 ~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~ 115 (274)
T 3kra_B 74 AAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPF 115 (274)
T ss_dssp HHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHH
Confidence 355678899844445579999999999999886665544443
No 6
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=29.79 E-value=12 Score=33.07 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=24.1
Q ss_pred HHHHHHHHccCCChh-----------hhHhcCCcccceecchhhHHHHHH
Q 022622 182 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
+..++.+..|+.|+. .|.+.|+.|+|+.+|.+.+.....
T Consensus 221 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~ 270 (302)
T 3p8r_A 221 VGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAH 270 (302)
T ss_dssp HHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHH
Confidence 444566666666664 467889999999999988866554
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=29.74 E-value=9.6 Score=33.68 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=24.0
Q ss_pred HHHHHHHHccCCChh-----------hhHhcCCcccceecchhhHHHHHH
Q 022622 182 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
+..++.+..|+.|+. +|.+.|+.|+|+.+|.+++.....
T Consensus 218 lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~ 267 (302)
T 3p8l_A 218 YGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALT 267 (302)
T ss_dssp HHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHH
Confidence 445666777776663 578889999999999998876654
No 8
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=29.23 E-value=9.9 Score=33.87 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHHHccCCChh-----------hhHhcCCcccceecchhhHHHHHHH
Q 022622 182 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLCVY 221 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~~G~~~a~~l~~~ 221 (294)
...++.+..|+.|+. .|.+.|+.|+|+.+|.+.+.....-
T Consensus 214 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~ 264 (317)
T 4f62_A 214 IGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVR 264 (317)
T ss_dssp HHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 445667777777764 4678899999999999988776643
No 9
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=27.83 E-value=11 Score=33.88 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=24.5
Q ss_pred HHHHHHHHccCCChh-----------hhHhcCCcccceecchhhHHHHHH
Q 022622 182 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
...++.+..|+.|+. +|.+.|+.|+|+.+|.+.+.....
T Consensus 254 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~ 303 (335)
T 2h8o_A 254 IGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQ 303 (335)
T ss_dssp HHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHH
Confidence 445667777777765 467789999999999887765543
No 10
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=26.22 E-value=12 Score=33.38 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=22.9
Q ss_pred HHHHHHHHccCCChh-----------hhHhcCCcccceecchhhHHHHHH
Q 022622 182 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
...++.+..|+.|+. .|.+.|+.|+|+.+|.+++.....
T Consensus 243 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~ 292 (324)
T 3uca_A 243 LGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCV 292 (324)
T ss_dssp HHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHH
Confidence 445666777776664 477889999999999998876654
No 11
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=26.12 E-value=12 Score=33.31 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=29.1
Q ss_pred HHHHHHHHHccCCChhhhH---------hcCCcccceecchhhHHHHHH
Q 022622 181 TISAVMSLLKDIPDEDGDK---------QFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~D~---------~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
.+..++.+..|+.|+.+|. +.|+.|.|+.+|.+++.....
T Consensus 221 ~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~ 269 (311)
T 3llw_A 221 KMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQ 269 (311)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHH
Confidence 3556778888999988775 579999999999998865543
No 12
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=23.79 E-value=18 Score=31.71 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=28.2
Q ss_pred HHHHHHHHccCCChhh-----------hHhcCCcccceecchhhHHHHH
Q 022622 182 ISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLC 219 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~~G~~~a~~l~ 219 (294)
...++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+....
T Consensus 215 lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~ 263 (299)
T 1rqj_A 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHH
Confidence 4556677777777654 5677999999999998765544
No 13
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=22.43 E-value=15 Score=32.11 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=28.7
Q ss_pred HHHHHHHHHccCCChhhhHhcCCcccceecchhhHHHHHH
Q 022622 181 TISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
....++.+..|+.|+.+|. ++|+|+.+|.+.+.....
T Consensus 224 ~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~ 260 (293)
T 2j1p_A 224 CIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAE 260 (293)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHH
Confidence 4566788999999999998 899999999887766553
No 14
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=21.96 E-value=15 Score=32.30 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=25.4
Q ss_pred HHHHHHHHHccCCChhh-----------hHhcCCcccceecchhhHHHHHH
Q 022622 181 TISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
.+..++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....
T Consensus 209 ~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~ 259 (301)
T 1rtr_A 209 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLT 259 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHH
Confidence 35557778888888754 56779999999999887765543
No 15
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=20.90 E-value=19 Score=31.90 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=28.8
Q ss_pred HHHHHHHHccCCChh-----------hhHhcCCcccceecchhhHHHHHH
Q 022622 182 ISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRLCV 220 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~~G~~~a~~l~~ 220 (294)
...++.+..|+.|+. .|.+.|+.|+|+.+|.+++.....
T Consensus 217 lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~ 266 (309)
T 3pde_A 217 FGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALI 266 (309)
T ss_dssp HHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHH
Confidence 445667777777774 577889999999999998865543
Done!