Query 022622
Match_columns 294
No_of_seqs 231 out of 2017
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 08:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022622.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022622hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 26.0 21 0.0015 29.1 3.2 44 182-225 76-120 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 25.2 5.9 0.00043 32.5 -0.5 52 44-96 68-119 (290)
3 d1rqja_ a.128.1.1 (A:) Farnesy 23.1 7.7 0.00056 31.9 -0.2 38 181-218 214-262 (299)
4 d1rtra_ a.128.1.1 (A:) Farnesy 17.8 34 0.0025 27.5 2.9 42 183-224 74-116 (290)
5 d1v4ea_ a.128.1.1 (A:) Octopre 10.6 66 0.0048 25.5 2.6 40 184-224 67-106 (280)
6 d1fpsa_ a.128.1.1 (A:) Farnesy 9.3 15 0.0011 30.7 -2.1 32 182-213 230-271 (348)
7 d1te7a_ b.122.1.7 (A:) Hypothe 5.2 1.1E+02 0.0083 20.4 1.2 15 195-209 12-26 (103)
8 d1ezfa_ a.128.1.2 (A:) Squalen 4.6 1.1E+02 0.0077 24.9 0.9 27 182-208 170-196 (333)
9 d2q80a1 a.128.1.1 (A:6-296) Ge 4.0 2E+02 0.015 22.4 2.2 49 46-97 48-96 (291)
10 d1iwga8 f.35.1.1 (A:513-566,A: 3.6 7.3E+02 0.053 17.8 9.1 123 3-127 79-209 (222)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=25.99 E-value=21 Score=29.09 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=33.7
Q ss_pred HHHHHHHHccCCChhh-hHhcCCcccceecchhhHHHHHHHHHHH
Q 022622 182 ISAVMSLLKDIPDEDG-DKQFGFQSISSKLGKENVLRLCVYALFF 225 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e~-D~~~G~~Tl~v~~G~~~a~~l~~~~~~~ 225 (294)
.-.+..+.-|++|.+. |.++|..|.-..+|.+.+....-.++..
T Consensus 76 lH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~ 120 (299)
T d1rqja_ 76 IHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTL 120 (299)
T ss_dssp HHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHH
Confidence 3345567789998886 5899999999999999987666555443
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=25.15 E-value=5.9 Score=32.48 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHHH
Q 022622 44 LSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSL 96 (294)
Q Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l 96 (294)
.+.=++|.++-+.+|+.|.|.|.. ||.+|-...+.....+...+-.+...+.
T Consensus 68 ~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~ 119 (290)
T d1rtra_ 68 IALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAF 119 (290)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHH
Confidence 344589999999999998887653 3455554445555555544444443333
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=23.09 E-value=7.7 Score=31.91 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=28.5
Q ss_pred HHHHHHHHHccCCChh-----------hhHhcCCcccceecchhhHHHH
Q 022622 181 TISAVMSLLKDIPDED-----------GDKQFGFQSISSKLGKENVLRL 218 (294)
Q Consensus 181 ~~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~~G~~~a~~l 218 (294)
.+..++.+..|+.|+. .|.+.|+.|+|+.+|.+.+...
T Consensus 214 ~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~ 262 (299)
T d1rqja_ 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKK 262 (299)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHH
Confidence 3555677777777765 3777899999999999876543
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=17.82 E-value=34 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=31.5
Q ss_pred HHHHHHHccCCChhhh-HhcCCcccceecchhhHHHHHHHHHH
Q 022622 183 SAVMSLLKDIPDEDGD-KQFGFQSISSKLGKENVLRLCVYALF 224 (294)
Q Consensus 183 ~~~~~~~~~~~D~e~D-~~~G~~Tl~v~~G~~~a~~l~~~~~~ 224 (294)
-.+..+.-|++|.++| .++|+.|.-..+|.+.+....-.++.
T Consensus 74 H~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~ 116 (290)
T d1rtra_ 74 HTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLT 116 (290)
T ss_dssp HHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhH
Confidence 3355577789887665 68899999999999988766554443
No 5
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=10.55 E-value=66 Score=25.53 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHHHHHccCCChhhhHhcCCcccceecchhhHHHHHHHHHH
Q 022622 184 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF 224 (294)
Q Consensus 184 ~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~a~~l~~~~~~ 224 (294)
.+..+.-|+.| ++|.++|..|.-..+|...+....-.++.
T Consensus 67 ~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~ 106 (280)
T d1v4ea_ 67 LASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLV 106 (280)
T ss_dssp HHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHH
Confidence 34456677777 67889999999999999988666544443
No 6
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.27 E-value=15 Score=30.65 Aligned_cols=32 Identities=16% Similarity=-0.099 Sum_probs=23.7
Q ss_pred HHHHHHHHccCCChh----------hhHhcCCcccceecchh
Q 022622 182 ISAVMSLLKDIPDED----------GDKQFGFQSISSKLGKE 213 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e----------~D~~~G~~Tl~v~~G~~ 213 (294)
+..++.+..|+.|+. +|.+.|++|+|+.+..+
T Consensus 230 lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~ 271 (348)
T d1fpsa_ 230 MGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQ 271 (348)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHH
T ss_pred cchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHH
Confidence 455667777777665 47788999999998664
No 7
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=5.19 E-value=1.1e+02 Score=20.40 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=12.2
Q ss_pred hhhhHhcCCccccee
Q 022622 195 EDGDKQFGFQSISSK 209 (294)
Q Consensus 195 ~e~D~~~G~~Tl~v~ 209 (294)
.|.|...|+||+-++
T Consensus 12 fe~dIlsGkKTITIR 26 (103)
T d1te7a_ 12 FQDDILAGRKTITIR 26 (103)
T ss_dssp HHHHHHTCCCEEEEE
T ss_pred hhHHHhcCCceEEec
Confidence 578999999998664
No 8
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.56 E-value=1.1e+02 Score=24.93 Aligned_cols=27 Identities=19% Similarity=0.046 Sum_probs=22.8
Q ss_pred HHHHHHHHccCCChhhhHhcCCcccce
Q 022622 182 ISAVMSLLKDIPDEDGDKQFGFQSISS 208 (294)
Q Consensus 182 ~~~~~~~~~~~~D~e~D~~~G~~Tl~v 208 (294)
+..+....|=++|+.+|.+.|+--+|.
T Consensus 170 lG~AlQltNIlRDi~eD~~~gR~YlP~ 196 (333)
T d1ezfa_ 170 MGLFLQKTNIIRDYLEDQQGGREFWPQ 196 (333)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTCCCSCH
T ss_pred HHHHHHHHHHHHhhHHHHhCCcEECCH
Confidence 444667888899999999999999985
No 9
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.97 E-value=2e+02 Score=22.40 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccCHHHHHHHHHHHHHHHHH
Q 022622 46 AVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLA 97 (294)
Q Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~ 97 (294)
.=++|.+.-+.+|+.|-+.=| |.+|-...+.....|...+-.++..+.-
T Consensus 48 iEllH~asLihDDi~D~~~~R---Rg~pt~~~~~G~~~Ail~gd~l~~~a~~ 96 (291)
T d2q80a1 48 TEMLHNASLLIDDIEDNSKLR---RGFPVAHSIYGIPSVINSANYVYFLGLE 96 (291)
T ss_dssp HHHHHHHHHHHHHHHHTCSEE---TTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCcccc---cCCCccccccchhhhhhHHHHHHHHHHH
Confidence 348999999999997655433 3444444445555665555555554443
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.63 E-value=7.3e+02 Score=17.84 Aligned_cols=123 Identities=8% Similarity=-0.064 Sum_probs=0.0
Q ss_pred cccccchHHH--HHHHHHHHhHhhccccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhhcCCCCCccCCccC
Q 022622 3 QFFLFPNSMY--QIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLS 80 (294)
Q Consensus 3 ~~~~Rp~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is 80 (294)
+.+..|--.. ..++++++.....-...+++.....+.. .+.+.....+....+++.+.+.++..++++.+..+.-.
T Consensus 79 rS~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i--~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~ 156 (222)
T d1iwga8 79 ESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLL--TTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRM 156 (222)
T ss_dssp CSSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccc--chhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh------chHHHHHHHHHHHHHHhHhcCCCCc
Q 022622 81 MGTGLAITLTLSLTSLAIALSL------QSPPLIFGLIVWFLLGTAYSVDLPF 127 (294)
Q Consensus 81 ~~~a~~~~~~~~~l~l~l~~~l------~~~~~~~~~~~~~~~~~~Ys~~~pp 127 (294)
.......+.+..++++.-.... -...+......+++...+.+...=|
T Consensus 157 ~~~~i~~t~ltti~gf~pl~~~~~~g~~~~~~la~~v~~Gll~s~~~~l~~~P 209 (222)
T d1iwga8 157 RLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVP 209 (222)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHHHTTTTSSSS
T ss_pred HhhhhhhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!