BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022623
MGPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRMRTFASKKSVK
KLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTV
TCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLL
KTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVA
TVFGALHLGSGRKYSFAVCHDLRLPLSGQRLLASHMATRQLYPRALSCQWLLML

High Scoring Gene Products

Symbol, full name Information P value
AT3G26085 protein from Arabidopsis thaliana 1.7e-59

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022623
        (294 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006379 - symbol:AT3G26085 "AT3G26085" speci...   610  1.7e-59   1


>TAIR|locus:505006379 [details] [associations]
            symbol:AT3G26085 "AT3G26085" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0006508
            "proteolysis" evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0016020 "membrane" evidence=IEA] InterPro:IPR003675
            Pfam:PF02517 EMBL:CP002686 EMBL:AB023041 GO:GO:0016020
            GO:GO:0006508 GO:GO:0008233 UniGene:At.37280 UniGene:At.43902
            IPI:IPI00846583 RefSeq:NP_001078210.1 STRING:A8MRZ2
            EnsemblPlants:AT3G26085.2 GeneID:822206 KEGG:ath:AT3G26085
            TAIR:At3g26085 eggNOG:COG1266 HOGENOM:HOG000015195 KO:K07052
            OMA:FAVWASI PhylomeDB:A8MRZ2 ProtClustDB:CLSN2688788
            Genevestigator:A8MRZ2 Uniprot:A8MRZ2
        Length = 322

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 126/215 (58%), Positives = 158/215 (73%)

Query:    47 KFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLV 106
             KF +R  +S+KS+KKLKR+ Q     +G  +  R+ T+++      +E+  D+ TS+  +
Sbjct:    66 KFDVRASSSRKSLKKLKRESQ-----QGKDIGLRNVTDEEVSSPRFEEAQVDSSTSKDSI 120

Query:   107 TI---PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLE 163
              +     R  VLQACTVT GL+ ALG+IIR+ SHVAS EGL   D S +V F FE WHL 
Sbjct:   121 DVFVAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLLVPDCSIDVPFGFETWHLG 180

Query:   164 LITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRG 223
             LI G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEELLFRG
Sbjct:   181 LIAGIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEELLFRG 240

Query:   224 ALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAV 258
             AL+PLFG +W  ++AV  +FG LHLGSGRKYSFAV
Sbjct:   241 ALMPLFGTNWNGIVAVGLIFGLLHLGSGRKYSFAV 275


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      294       294   0.00091  115 3  11 22  0.48    33
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  208 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.21u 0.16s 25.37t   Elapsed:  00:00:02
  Total cpu time:  25.21u 0.16s 25.37t   Elapsed:  00:00:02
  Start:  Fri May 10 08:55:04 2013   End:  Fri May 10 08:55:06 2013

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