Query 022623
Match_columns 294
No_of_seqs 209 out of 1132
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 08:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ww9_B Protein transport prote 9.5 2.7E+02 0.0093 21.0 3.5 27 105-131 38-64 (80)
2 1rh5_B Preprotein translocase 9.2 2.9E+02 0.0098 20.5 3.5 26 106-131 26-51 (74)
3 3sjd_D Golgi to ER traffic pro 9.2 1.1E+02 0.0036 21.0 1.0 20 57-76 17-36 (46)
4 3mp7_B Preprotein translocase 8.3 2.7E+02 0.0094 19.8 2.9 25 107-131 23-47 (61)
5 2wwb_B SEC61gamma, protein tra 6.6 2.3E+02 0.0079 20.6 1.9 25 107-131 26-50 (68)
6 1lyp_A CAP18; lipopolysacchari 6.1 2.5E+02 0.0086 17.4 1.5 21 47-68 3-23 (32)
7 2pv4_A Uncharacterized protein 6.0 1.8E+02 0.006 24.4 1.0 14 56-69 120-133 (145)
8 3bej_E Nuclear receptor coacti 5.7 70 0.0024 19.3 -1.2 10 36-45 8-17 (26)
9 4b1v_M Phosphatase and actin r 5.3 1.2E+02 0.0041 19.1 -0.3 11 216-226 18-28 (32)
10 3zs9_C Golgi to ER traffic pro 5.1 2.3E+02 0.0079 18.6 0.9 17 58-74 8-24 (38)
No 1
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=9.49 E-value=2.7e+02 Score=20.99 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=22.8
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHH
Q 022623 105 LVTIPSRSNVLQACTVTCGLITALGVI 131 (294)
Q Consensus 105 l~~~~~R~~lL~~~~lT~illLiial~ 131 (294)
.-..|.|.+....+-.|.+.++++|++
T Consensus 38 ~~~KPdr~Ef~~iak~t~iG~~imG~I 64 (80)
T 2ww9_B 38 KCKKPDLKEYTKIVKAVGIGFIAVGII 64 (80)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999988865
No 2
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=9.24 E-value=2.9e+02 Score=20.47 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=21.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHH
Q 022623 106 VTIPSRSNVLQACTVTCGLITALGVI 131 (294)
Q Consensus 106 ~~~~~R~~lL~~~~lT~illLiial~ 131 (294)
-..|.|++....+-.|.+.++++|.+
T Consensus 26 ~~KPdr~EF~~iak~~~iG~~imG~I 51 (74)
T 1rh5_B 26 LKKPTKDEYLAVAKVTALGISLLGII 51 (74)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999988888864
No 3
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=9.16 E-value=1.1e+02 Score=21.00 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=14.1
Q ss_pred hhHHHHHHHHhhhhhhcCCC
Q 022623 57 KSVKKLKRDRQLRLAEKGNG 76 (294)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~ 76 (294)
.-..+++||+++.|-.+++|
T Consensus 17 ~EkaRLrRERR~aKi~~G~a 36 (46)
T 3sjd_D 17 AEKRRLLRERRQKKFSNGGA 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHccch
Confidence 35678899998887665543
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=8.29 E-value=2.7e+02 Score=19.75 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=20.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 022623 107 TIPSRSNVLQACTVTCGLITALGVI 131 (294)
Q Consensus 107 ~~~~R~~lL~~~~lT~illLiial~ 131 (294)
..|.|++....+-.+.+.++++|.+
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~i 47 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLI 47 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888998888888888888764
No 5
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=6.55 E-value=2.3e+02 Score=20.64 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 022623 107 TIPSRSNVLQACTVTCGLITALGVI 131 (294)
Q Consensus 107 ~~~~R~~lL~~~~lT~illLiial~ 131 (294)
..|.|.+....+-.|.+.++++|.+
T Consensus 26 ~KPdr~Ef~~iak~~~iG~~i~G~I 50 (68)
T 2wwb_B 26 TKPDRKEFQKIAMATAIGFAIMGFI 50 (68)
T ss_dssp CCCCTHHHHHHHHHSSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999988888864
No 6
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=6.12 E-value=2.5e+02 Score=17.38 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=12.0
Q ss_pred chhhhhhhchhhHHHHHHHHhh
Q 022623 47 KFRMRTFASKKSVKKLKRDRQL 68 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~ 68 (294)
+.+.|.|. .|-+.|+++-.|+
T Consensus 3 rkrlrkfr-nkikeklkkigqk 23 (32)
T 1lyp_A 3 RKRLRKFR-NKIKEKLKKIGQK 23 (32)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHH
Confidence 34556662 3445567776665
No 7
>2pv4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.95A {Shewanella amazonensis} SCOP: a.286.1.1
Probab=6.03 E-value=1.8e+02 Score=24.36 Aligned_cols=14 Identities=64% Similarity=0.748 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHhhh
Q 022623 56 KKSVKKLKRDRQLR 69 (294)
Q Consensus 56 ~~~~~~~~~~~~~~ 69 (294)
+-+||||||-|+.|
T Consensus 120 Ke~vKkLKKARtdr 133 (145)
T 2pv4_A 120 KESVKKLKKARTDR 133 (145)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHccCH
Confidence 34889998888765
No 8
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=5.68 E-value=70 Score=19.33 Aligned_cols=10 Identities=20% Similarity=0.046 Sum_probs=5.6
Q ss_pred cccccccccc
Q 022623 36 LHNAGKSHNV 45 (294)
Q Consensus 36 ~~~~~~~~~~ 45 (294)
|.+++||+|.
T Consensus 8 L~EkHkILHr 17 (26)
T 3bej_E 8 LTERHKILHR 17 (26)
T ss_pred HHHHHHHHHH
Confidence 5556666553
No 9
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=5.32 E-value=1.2e+02 Score=19.10 Aligned_cols=11 Identities=55% Similarity=0.721 Sum_probs=8.2
Q ss_pred HHHHHHHHHhH
Q 022623 216 SEELLFRGALL 226 (294)
Q Consensus 216 ~EELLFRGiLl 226 (294)
-||++=||++.
T Consensus 18 reelikrgvlk 28 (32)
T 4b1v_M 18 REELIKRGVLK 28 (32)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHhhhhh
Confidence 38888888764
No 10
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=5.06 E-value=2.3e+02 Score=18.63 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=11.9
Q ss_pred hHHHHHHHHhhhhhhcC
Q 022623 58 SVKKLKRDRQLRLAEKG 74 (294)
Q Consensus 58 ~~~~~~~~~~~~~~~~~ 74 (294)
-..+++||+++.|-.++
T Consensus 8 ekaRlrRERR~aKi~~G 24 (38)
T 3zs9_C 8 EKRRLLRERRQKKFSNG 24 (38)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 35678888888775544
Done!