Query 022623
Match_columns 294
No_of_seqs 209 out of 1132
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 08:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022623.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022623hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 14.0 82 0.006 20.7 3.5 25 107-131 16-40 (56)
2 d2d8ra1 g.39.1.16 (A:8-93) THA 6.9 55 0.004 22.2 0.4 25 5-29 6-31 (86)
3 d2pv4a1 a.286.1.1 (A:1-144) Un 6.0 82 0.006 24.4 1.0 14 56-69 119-132 (144)
4 d2ct1a1 g.37.1.1 (A:44-71) Tra 5.4 65 0.0047 18.2 0.0 11 7-17 6-16 (28)
5 d1r5sa_ f.50.1.1 (A:) Gap junc 5.3 1.7E+02 0.012 21.7 2.4 38 17-54 78-119 (132)
6 d1knya1 a.24.16.1 (A:126-253) 5.3 72 0.0052 24.3 0.3 13 28-40 46-58 (128)
7 d1d7qa_ b.40.4.5 (A:) Translat 3.2 4.5E+02 0.033 19.3 3.5 18 55-72 95-112 (143)
8 d1wm7a_ g.3.7.2 (A:) Neurotoxi 3.1 1.3E+02 0.0098 16.8 0.1 11 7-17 8-18 (29)
9 d1q90m_ f.23.25.1 (M:) PetM su 3.0 5E+02 0.037 14.8 2.9 19 257-275 12-30 (34)
10 d1q90g_ f.23.26.1 (G:) PetG su 3.0 3.5E+02 0.026 15.2 1.9 8 263-270 7-14 (30)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=13.96 E-value=82 Score=20.72 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 022623 107 TIPSRSNVLQACTVTCGLITALGVI 131 (294)
Q Consensus 107 ~~~~R~~lL~~~~lT~illLiial~ 131 (294)
..|+|++.....-.|.+.++++|.+
T Consensus 16 ~KP~~~Ef~~ia~v~~iG~~i~G~I 40 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKVTALGISLLGII 40 (56)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999988864
No 2
>d2d8ra1 g.39.1.16 (A:8-93) THAP domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.88 E-value=55 Score=22.22 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=13.7
Q ss_pred ccccccceeeeccCCCC-CCCChhhh
Q 022623 5 AINHCSTITYRASNRHP-LCPDSASM 29 (294)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~~~ 29 (294)
++.-|.+-..+..++++ .||-....
T Consensus 6 ~v~~C~~~~~~~~~~~ff~fP~d~~~ 31 (86)
T d2d8ra1 6 AAAGCATTYNKHINISFHRFPLDPKR 31 (86)
T ss_dssp CSSSCCCSCCSSCCCCCEECCSSHHH
T ss_pred EcCCCCCCCCCCCCEEEEECCCCHHH
Confidence 45567665555655543 46755433
No 3
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=6.04 E-value=82 Score=24.41 Aligned_cols=14 Identities=64% Similarity=0.748 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHhhh
Q 022623 56 KKSVKKLKRDRQLR 69 (294)
Q Consensus 56 ~~~~~~~~~~~~~~ 69 (294)
+.++|||||-|+-|
T Consensus 119 Kd~~KqLKKAR~D~ 132 (144)
T d2pv4a1 119 KESVKKLKKARTDR 132 (144)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHccCH
Confidence 44888888887764
No 4
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.36 E-value=65 Score=18.23 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.7
Q ss_pred ccccceeeecc
Q 022623 7 NHCSTITYRAS 17 (294)
Q Consensus 7 ~~~~~~~~~~~ 17 (294)
.||.||.-|.|
T Consensus 6 phc~tiiarks 16 (28)
T d2ct1a1 6 PHCDTVIARKS 16 (28)
T ss_dssp SSSSCEESSHH
T ss_pred Ccchhheeehh
Confidence 58999887765
No 5
>d1r5sa_ f.50.1.1 (A:) Gap junction alpha-1 protein, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.35 E-value=1.7e+02 Score=21.69 Aligned_cols=38 Identities=24% Similarity=0.111 Sum_probs=25.7
Q ss_pred cCCC---CCCCChhhhhhhhhhcccccccccc-cchhhhhhh
Q 022623 17 SNRH---PLCPDSASMRAKFIGLHNAGKSHNV-LKFRMRTFA 54 (294)
Q Consensus 17 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 54 (294)
||.| |.||+.....+|+.-.|+.+-.--. -+-+-||.+
T Consensus 78 snsHaQ~Fd~pd~~~~~Kk~~~~hElqPla~~d~RP~SRAss 119 (132)
T d1r5sa_ 78 SNSHAQPFDFPDDNQNAKKVAAGHELQPLAIVDQRPSSRASS 119 (132)
T ss_dssp CCSCCCSCCCTTSSHHHHHHHTTTTSCSCSSCSSSCSSTTTT
T ss_pred cccccccCCCccchhhhhhcccccccCchhhhccCccchhhh
Confidence 5666 6899999999999988888763222 224445443
No 6
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase (KNTase), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=5.34 E-value=72 Score=24.29 Aligned_cols=13 Identities=38% Similarity=0.427 Sum_probs=10.9
Q ss_pred hhhhhhhhccccc
Q 022623 28 SMRAKFIGLHNAG 40 (294)
Q Consensus 28 ~~~~~~~~~~~~~ 40 (294)
..++.+|||||+-
T Consensus 46 ~~gAmligLhNr~ 58 (128)
T d1knya1 46 MAGAMLIGLHHRI 58 (128)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhh
Confidence 6789999999863
No 7
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.19 E-value=4.5e+02 Score=19.29 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=11.6
Q ss_pred chhhHHHHHHHHhhhhhh
Q 022623 55 SKKSVKKLKRDRQLRLAE 72 (294)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~ 72 (294)
++.-+++|++....+...
T Consensus 95 ~~~e~~~L~~~~~ip~~~ 112 (143)
T d1d7qa_ 95 NADEARSLKAYGELPEHA 112 (143)
T ss_dssp CTTTHHHHHHHTSSCTTC
T ss_pred CHHHHHHHHHCCCCChhh
Confidence 345678888876665443
No 8
>d1wm7a_ g.3.7.2 (A:) Neurotoxin bmp01 {Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]}
Probab=3.08 E-value=1.3e+02 Score=16.84 Aligned_cols=11 Identities=45% Similarity=0.776 Sum_probs=8.3
Q ss_pred ccccceeeecc
Q 022623 7 NHCSTITYRAS 17 (294)
Q Consensus 7 ~~~~~~~~~~~ 17 (294)
.||+|-.-||.
T Consensus 8 ehc~tq~arak 18 (29)
T d1wm7a_ 8 EHCATQNARAK 18 (29)
T ss_dssp TTTTTTTCEEE
T ss_pred HHhhhhhhhhh
Confidence 68988777764
No 9
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.01 E-value=5e+02 Score=14.78 Aligned_cols=19 Identities=26% Similarity=0.011 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 022623 257 AVCHDLRLPLSGQRLLASH 275 (294)
Q Consensus 257 ~i~a~llGliLG~vYl~TG 275 (294)
++-.+++|+..|++.++-.
T Consensus 12 mig~tl~glaigfvllrve 30 (34)
T d1q90m_ 12 MVGMTLVGLAIGFVLLRVE 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheeeH
Confidence 4455678888888877643
No 10
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.99 E-value=3.5e+02 Score=15.25 Aligned_cols=8 Identities=13% Similarity=-0.267 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 022623 263 RLPLSGQR 270 (294)
Q Consensus 263 lGliLG~v 270 (294)
.|+++|.+
T Consensus 7 ~GivlGli 14 (30)
T d1q90g_ 7 CGIVLGLV 14 (30)
T ss_dssp HHHHHHHH
T ss_pred HhHHHhhH
Confidence 44444443
Done!