Query 022626
Match_columns 294
No_of_seqs 244 out of 3164
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 1.3E-48 2.9E-53 354.2 17.9 268 7-293 1-300 (531)
2 COG2072 TrkA Predicted flavopr 100.0 1.1E-38 2.3E-43 285.1 23.8 201 6-219 7-208 (443)
3 PLN02172 flavin-containing mon 100.0 4.8E-38 1E-42 281.9 23.9 202 6-219 9-237 (461)
4 KOG1399 Flavin-containing mono 100.0 2.2E-38 4.7E-43 279.3 20.1 201 6-217 5-217 (448)
5 PF13738 Pyr_redox_3: Pyridine 100.0 1.3E-33 2.9E-38 229.0 13.5 189 11-220 1-201 (203)
6 TIGR01292 TRX_reduct thioredox 99.9 3.1E-24 6.8E-29 184.2 20.1 175 8-220 1-175 (300)
7 COG0492 TrxB Thioredoxin reduc 99.9 2.3E-24 4.9E-29 182.7 18.5 175 6-223 2-180 (305)
8 PRK10262 thioredoxin reductase 99.9 1.1E-23 2.3E-28 182.7 19.5 177 4-219 3-179 (321)
9 PRK15317 alkyl hydroperoxide r 99.9 4.5E-23 9.7E-28 189.2 20.7 176 6-220 210-385 (517)
10 KOG0404 Thioredoxin reductase 99.9 1.9E-23 4.1E-28 162.8 12.3 250 7-293 8-276 (322)
11 TIGR03143 AhpF_homolog putativ 99.9 1.6E-22 3.5E-27 186.7 19.7 173 7-219 4-176 (555)
12 PF13434 K_oxygenase: L-lysine 99.9 4E-23 8.6E-28 178.8 13.1 215 7-237 2-246 (341)
13 COG1249 Lpd Pyruvate/2-oxoglut 99.9 8.9E-23 1.9E-27 181.2 15.3 263 6-291 3-294 (454)
14 TIGR03140 AhpF alkyl hydropero 99.9 9.1E-22 2E-26 180.4 20.7 175 6-219 211-385 (515)
15 PRK05249 soluble pyridine nucl 99.9 6.2E-22 1.3E-26 179.8 18.3 208 6-243 4-226 (461)
16 TIGR01421 gluta_reduc_1 glutat 99.9 2.4E-22 5.2E-27 181.4 15.4 199 7-243 2-217 (450)
17 PRK14694 putative mercuric red 99.9 1E-21 2.2E-26 178.4 18.9 192 5-219 4-211 (468)
18 PRK14727 putative mercuric red 99.9 1.7E-21 3.7E-26 177.3 19.1 199 2-219 11-221 (479)
19 PRK06370 mercuric reductase; V 99.9 9.4E-22 2E-26 178.6 15.4 184 6-219 4-204 (463)
20 PRK06467 dihydrolipoamide dehy 99.9 1.8E-21 3.9E-26 176.7 17.0 205 7-243 4-225 (471)
21 PRK08010 pyridine nucleotide-d 99.9 4.5E-21 9.7E-26 173.2 19.0 181 7-219 3-191 (441)
22 PRK06416 dihydrolipoamide dehy 99.9 4.9E-21 1.1E-25 174.0 18.0 186 6-219 3-205 (462)
23 PRK07251 pyridine nucleotide-d 99.9 9E-21 1.9E-25 171.1 19.0 175 7-219 3-190 (438)
24 PLN02507 glutathione reductase 99.9 4.5E-21 9.6E-26 174.9 16.7 205 7-243 25-254 (499)
25 PRK06116 glutathione reductase 99.9 7.5E-21 1.6E-25 172.1 16.9 180 7-219 4-200 (450)
26 PRK06292 dihydrolipoamide dehy 99.9 4.2E-21 9E-26 174.4 14.7 191 7-219 3-202 (460)
27 PRK13748 putative mercuric red 99.9 1.3E-20 2.8E-25 175.2 18.1 190 7-219 98-303 (561)
28 TIGR02053 MerA mercuric reduct 99.9 3.3E-21 7.1E-26 175.1 13.8 184 8-219 1-199 (463)
29 TIGR01424 gluta_reduc_2 glutat 99.9 5.9E-21 1.3E-25 172.4 15.2 182 7-219 2-199 (446)
30 KOG0405 Pyridine nucleotide-di 99.9 3.5E-21 7.6E-26 159.4 11.6 215 5-244 18-241 (478)
31 PTZ00058 glutathione reductase 99.9 3.4E-20 7.3E-25 170.1 18.5 208 6-243 47-288 (561)
32 PTZ00052 thioredoxin reductase 99.9 5.3E-21 1.1E-25 174.5 12.9 191 7-218 5-214 (499)
33 PRK05976 dihydrolipoamide dehy 99.9 3.2E-20 6.9E-25 168.9 17.6 190 7-219 4-213 (472)
34 PRK12779 putative bifunctional 99.9 1.3E-20 2.8E-25 181.7 15.6 161 6-219 305-480 (944)
35 PRK06115 dihydrolipoamide dehy 99.8 7.3E-20 1.6E-24 166.1 19.4 188 7-219 3-207 (466)
36 PRK12831 putative oxidoreducta 99.8 7.4E-21 1.6E-25 171.9 12.8 163 6-219 139-314 (464)
37 TIGR01438 TGR thioredoxin and 99.8 5.9E-20 1.3E-24 166.9 17.2 205 7-243 2-230 (484)
38 PRK07818 dihydrolipoamide dehy 99.8 1.1E-19 2.3E-24 165.2 18.9 191 7-219 4-205 (466)
39 PRK06912 acoL dihydrolipoamide 99.8 7.2E-20 1.6E-24 165.9 17.3 185 9-219 2-203 (458)
40 PLN02546 glutathione reductase 99.8 4.4E-20 9.4E-25 169.4 14.8 199 7-242 79-302 (558)
41 TIGR01316 gltA glutamate synth 99.8 4.2E-20 9.1E-25 166.7 13.5 160 6-219 132-305 (449)
42 TIGR01350 lipoamide_DH dihydro 99.8 1.6E-19 3.5E-24 164.1 16.2 184 8-219 2-203 (461)
43 PRK09564 coenzyme A disulfide 99.8 2.1E-19 4.6E-24 162.6 16.6 171 8-219 1-182 (444)
44 TIGR01423 trypano_reduc trypan 99.8 2.2E-19 4.8E-24 162.9 16.6 219 6-244 2-242 (486)
45 PRK06327 dihydrolipoamide dehy 99.8 6.2E-19 1.4E-23 160.4 18.1 190 7-219 4-216 (475)
46 PRK13512 coenzyme A disulfide 99.8 2.8E-19 6E-24 161.1 15.5 187 8-242 2-198 (438)
47 PRK07845 flavoprotein disulfid 99.8 7.4E-19 1.6E-23 159.5 18.2 191 8-219 2-210 (466)
48 PLN02852 ferredoxin-NADP+ redu 99.8 2.4E-19 5.1E-24 161.1 14.2 162 6-220 25-221 (491)
49 PRK07846 mycothione reductase; 99.8 2.4E-19 5.2E-24 161.9 14.3 191 7-219 1-199 (451)
50 PRK04965 NADH:flavorubredoxin 99.8 4.2E-19 9.1E-24 157.2 15.5 164 8-219 3-174 (377)
51 PRK09754 phenylpropionate diox 99.8 3.9E-19 8.5E-24 158.3 14.8 168 7-219 3-177 (396)
52 PTZ00153 lipoamide dehydrogena 99.8 2.6E-19 5.7E-24 166.4 13.7 212 6-241 115-361 (659)
53 PRK12778 putative bifunctional 99.8 2.5E-19 5.3E-24 171.3 12.9 161 6-219 430-604 (752)
54 COG3634 AhpF Alkyl hydroperoxi 99.8 6.6E-19 1.4E-23 146.1 12.9 182 6-224 210-392 (520)
55 PRK14989 nitrite reductase sub 99.8 1E-18 2.2E-23 167.2 16.1 167 7-219 3-178 (847)
56 COG1252 Ndh NADH dehydrogenase 99.8 4E-19 8.7E-24 154.4 11.3 195 6-245 2-221 (405)
57 PRK09853 putative selenate red 99.8 1.2E-18 2.7E-23 166.2 15.5 158 6-219 538-703 (1019)
58 KOG4716 Thioredoxin reductase 99.8 4.1E-18 9E-23 140.9 16.4 217 5-244 17-249 (503)
59 PRK11749 dihydropyrimidine deh 99.8 5.1E-19 1.1E-23 160.3 12.0 160 6-219 139-307 (457)
60 TIGR02374 nitri_red_nirB nitri 99.8 1E-18 2.2E-23 167.1 14.5 165 10-219 1-173 (785)
61 PRK12770 putative glutamate sy 99.8 1.8E-18 3.8E-23 151.8 14.6 174 5-219 16-206 (352)
62 KOG1335 Dihydrolipoamide dehyd 99.8 1.5E-19 3.3E-24 151.5 6.3 217 6-241 38-272 (506)
63 PRK12775 putative trifunctiona 99.8 2.2E-18 4.8E-23 167.7 14.8 161 7-219 430-605 (1006)
64 PTZ00318 NADH dehydrogenase-li 99.8 2.4E-18 5.2E-23 154.4 12.5 198 6-244 9-239 (424)
65 PRK12814 putative NADPH-depend 99.8 2.6E-18 5.7E-23 161.3 12.1 159 7-219 193-357 (652)
66 TIGR03452 mycothione_red mycot 99.8 3.6E-18 7.9E-23 154.3 12.4 190 7-219 2-202 (452)
67 COG3486 IucD Lysine/ornithine 99.7 4.8E-17 1E-21 138.2 15.1 191 6-219 4-224 (436)
68 TIGR03315 Se_ygfK putative sel 99.7 1.7E-17 3.7E-22 159.2 13.5 157 7-219 537-701 (1012)
69 PRK12810 gltD glutamate syntha 99.7 1.3E-17 2.7E-22 151.6 11.8 159 7-219 143-315 (471)
70 PRK12769 putative oxidoreducta 99.7 3E-17 6.4E-22 154.7 14.1 161 6-219 326-502 (654)
71 TIGR01318 gltD_gamma_fam gluta 99.7 9.8E-17 2.1E-21 145.4 14.5 159 6-219 140-316 (467)
72 PRK12809 putative oxidoreducta 99.7 1.6E-16 3.4E-21 149.3 14.3 161 6-219 309-485 (639)
73 TIGR03169 Nterm_to_SelD pyridi 99.7 1.6E-16 3.5E-21 140.2 12.8 160 9-216 1-181 (364)
74 TIGR01317 GOGAT_sm_gam glutama 99.7 3.3E-16 7.1E-21 142.6 14.9 160 7-219 143-317 (485)
75 PTZ00188 adrenodoxin reductase 99.7 3.4E-16 7.4E-21 138.9 14.4 45 5-49 37-82 (506)
76 TIGR01372 soxA sarcosine oxida 99.7 5.1E-16 1.1E-20 151.9 16.3 176 7-219 163-351 (985)
77 KOG1336 Monodehydroascorbate/f 99.7 1.2E-16 2.5E-21 138.5 8.5 166 7-219 74-246 (478)
78 PRK13984 putative oxidoreducta 99.7 3.8E-16 8.3E-21 146.3 12.2 157 6-216 282-454 (604)
79 KOG1800 Ferredoxin/adrenodoxin 99.7 6.2E-16 1.3E-20 130.0 10.4 169 6-219 19-214 (468)
80 PRK06567 putative bifunctional 99.7 8.4E-16 1.8E-20 145.5 12.3 39 6-44 382-420 (1028)
81 PRK09897 hypothetical protein; 99.6 6.1E-15 1.3E-19 134.3 16.6 191 8-221 2-247 (534)
82 COG1251 NirB NAD(P)H-nitrite r 99.6 1.5E-15 3.3E-20 137.6 12.3 200 7-251 3-217 (793)
83 PRK12771 putative glutamate sy 99.6 4E-15 8.7E-20 138.2 11.9 159 6-219 136-301 (564)
84 COG0493 GltD NADPH-dependent g 99.6 9.8E-15 2.1E-19 130.2 11.1 157 7-217 123-294 (457)
85 COG4529 Uncharacterized protei 99.6 8.4E-13 1.8E-17 115.5 20.0 197 8-221 2-233 (474)
86 COG2081 Predicted flavoprotein 99.5 3.4E-13 7.3E-18 115.2 13.9 135 6-152 2-170 (408)
87 TIGR03385 CoA_CoA_reduc CoA-di 99.5 3.6E-13 7.8E-18 121.4 13.7 157 21-219 1-170 (427)
88 PF13454 NAD_binding_9: FAD-NA 99.5 6.2E-13 1.3E-17 102.8 13.0 126 11-147 1-155 (156)
89 KOG2495 NADH-dehydrogenase (ub 99.5 2.4E-13 5.2E-18 116.3 11.3 202 5-245 53-285 (491)
90 PF03486 HI0933_like: HI0933-l 99.5 2.9E-13 6.4E-18 119.8 9.4 134 8-152 1-169 (409)
91 TIGR02032 GG-red-SF geranylger 99.4 3.9E-12 8.4E-17 108.8 12.9 128 8-149 1-148 (295)
92 TIGR02023 BchP-ChlP geranylger 99.4 9.3E-12 2E-16 110.8 14.7 136 8-149 1-155 (388)
93 PRK04176 ribulose-1,5-biphosph 99.4 8.1E-12 1.7E-16 104.4 12.4 138 7-149 25-173 (257)
94 TIGR00292 thiazole biosynthesi 99.4 1.2E-11 2.6E-16 103.0 12.8 139 6-149 20-170 (254)
95 KOG0399 Glutamate synthase [Am 99.4 2.5E-12 5.4E-17 120.8 9.1 152 7-211 1785-1949(2142)
96 PRK06847 hypothetical protein; 99.3 3.7E-11 8.1E-16 106.5 16.0 133 7-151 4-165 (375)
97 PRK08244 hypothetical protein; 99.3 3.9E-11 8.4E-16 110.2 16.5 134 7-149 2-159 (493)
98 PRK10157 putative oxidoreducta 99.3 3.1E-11 6.7E-16 108.6 15.4 131 7-149 5-164 (428)
99 PF07992 Pyr_redox_2: Pyridine 99.3 1.6E-13 3.6E-18 110.7 0.4 152 9-193 1-159 (201)
100 PF01494 FAD_binding_3: FAD bi 99.3 9.9E-12 2.1E-16 109.0 11.3 134 8-149 2-172 (356)
101 PRK06183 mhpA 3-(3-hydroxyphen 99.3 7.3E-11 1.6E-15 109.4 17.3 138 5-150 8-175 (538)
102 COG1635 THI4 Ribulose 1,5-bisp 99.3 1.4E-11 2.9E-16 96.9 10.3 137 7-148 30-177 (262)
103 PRK08013 oxidoreductase; Provi 99.3 2.9E-11 6.4E-16 108.0 14.0 132 7-150 3-169 (400)
104 COG0644 FixC Dehydrogenases (f 99.3 2.8E-11 6.1E-16 107.9 13.4 133 6-149 2-152 (396)
105 PRK06834 hypothetical protein; 99.3 8.4E-11 1.8E-15 107.4 15.7 131 7-149 3-156 (488)
106 TIGR01790 carotene-cycl lycope 99.3 5.6E-11 1.2E-15 105.9 14.3 129 9-149 1-141 (388)
107 PRK06184 hypothetical protein; 99.3 1.3E-10 2.8E-15 107.0 16.9 134 7-149 3-168 (502)
108 PRK07364 2-octaprenyl-6-methox 99.3 6.9E-11 1.5E-15 106.2 14.7 136 6-150 17-182 (415)
109 PRK08773 2-octaprenyl-3-methyl 99.3 6.3E-11 1.4E-15 105.7 14.3 133 5-149 4-169 (392)
110 PRK08132 FAD-dependent oxidore 99.3 1.6E-10 3.4E-15 107.5 17.3 138 3-149 19-185 (547)
111 PLN02463 lycopene beta cyclase 99.3 4.7E-11 1E-15 107.3 13.4 125 7-149 28-169 (447)
112 PRK07494 2-octaprenyl-6-methox 99.3 5E-11 1.1E-15 106.2 13.3 132 6-149 6-167 (388)
113 PRK07190 hypothetical protein; 99.3 1.4E-10 3.1E-15 105.8 16.1 131 7-149 5-165 (487)
114 PRK10015 oxidoreductase; Provi 99.3 1.6E-10 3.5E-15 104.0 16.2 131 7-149 5-164 (429)
115 PRK07045 putative monooxygenas 99.2 2.5E-10 5.4E-15 101.7 15.5 134 6-149 4-165 (388)
116 PRK06753 hypothetical protein; 99.2 1.9E-10 4.1E-15 101.9 14.6 127 8-149 1-152 (373)
117 PRK05714 2-octaprenyl-3-methyl 99.2 8E-11 1.7E-15 105.5 12.1 132 7-150 2-169 (405)
118 PRK07333 2-octaprenyl-6-methox 99.2 1.8E-10 3.8E-15 103.2 14.1 131 8-150 2-168 (403)
119 PF05834 Lycopene_cycl: Lycope 99.2 1.7E-10 3.7E-15 102.0 13.8 122 9-148 1-141 (374)
120 COG0654 UbiH 2-polyprenyl-6-me 99.2 1.7E-10 3.8E-15 102.6 13.8 131 7-149 2-162 (387)
121 PRK06126 hypothetical protein; 99.2 4.5E-10 9.7E-15 104.4 16.7 138 5-149 5-188 (545)
122 PRK06185 hypothetical protein; 99.2 2.9E-10 6.3E-15 101.9 14.8 136 6-149 5-169 (407)
123 PRK08163 salicylate hydroxylas 99.2 1.3E-10 2.8E-15 103.8 12.4 133 7-151 4-168 (396)
124 TIGR02028 ChlP geranylgeranyl 99.2 3.8E-10 8.3E-15 100.7 15.1 136 8-149 1-160 (398)
125 PRK08020 ubiF 2-octaprenyl-3-m 99.2 1.8E-10 3.9E-15 102.7 12.9 132 6-149 4-169 (391)
126 PLN00093 geranylgeranyl diphos 99.2 3.5E-10 7.6E-15 102.1 14.6 138 6-149 38-199 (450)
127 TIGR01988 Ubi-OHases Ubiquinon 99.2 2.2E-10 4.7E-15 101.9 13.2 130 9-150 1-164 (385)
128 PRK07588 hypothetical protein; 99.2 2E-10 4.3E-15 102.4 12.9 131 8-151 1-160 (391)
129 PRK09126 hypothetical protein; 99.2 3E-10 6.6E-15 101.3 14.0 132 7-150 3-168 (392)
130 PRK07538 hypothetical protein; 99.2 2E-09 4.4E-14 96.6 19.3 136 8-150 1-166 (413)
131 PRK07608 ubiquinone biosynthes 99.2 3.5E-10 7.5E-15 100.8 14.2 130 7-150 5-168 (388)
132 PRK11445 putative oxidoreducta 99.2 4.5E-10 9.8E-15 98.6 14.5 131 8-150 2-158 (351)
133 PRK06617 2-octaprenyl-6-methox 99.2 4E-10 8.8E-15 99.8 13.5 130 8-150 2-161 (374)
134 PRK08243 4-hydroxybenzoate 3-m 99.2 7E-10 1.5E-14 99.0 15.1 132 7-150 2-164 (392)
135 TIGR01989 COQ6 Ubiquinone bios 99.2 3E-10 6.6E-15 102.7 12.7 135 8-150 1-184 (437)
136 COG3380 Predicted NAD/FAD-depe 99.2 1.7E-10 3.8E-15 93.5 9.6 123 9-147 3-158 (331)
137 PF01946 Thi4: Thi4 family; PD 99.2 1.9E-10 4E-15 91.0 9.6 136 7-147 17-163 (230)
138 PRK07236 hypothetical protein; 99.2 1.3E-09 2.9E-14 97.0 16.3 133 5-151 4-156 (386)
139 TIGR01984 UbiH 2-polyprenyl-6- 99.2 2.8E-10 6E-15 101.2 11.7 129 9-149 1-162 (382)
140 PRK08850 2-octaprenyl-6-methox 99.1 6.9E-10 1.5E-14 99.4 13.4 131 7-149 4-168 (405)
141 COG0446 HcaD Uncharacterized N 99.1 5.2E-10 1.1E-14 100.2 12.6 162 10-219 1-169 (415)
142 PRK05732 2-octaprenyl-6-methox 99.1 6.5E-10 1.4E-14 99.3 13.1 131 7-149 3-169 (395)
143 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 9.3E-10 2E-14 98.0 14.0 135 7-150 2-164 (390)
144 PLN02697 lycopene epsilon cycl 99.1 1.3E-09 2.7E-14 99.8 14.8 129 7-149 108-248 (529)
145 TIGR00275 flavoprotein, HI0933 99.1 7.5E-10 1.6E-14 98.8 13.1 126 11-151 1-162 (400)
146 PRK08849 2-octaprenyl-3-methyl 99.1 6.8E-10 1.5E-14 98.8 12.2 132 7-150 3-168 (384)
147 PRK06996 hypothetical protein; 99.1 1.2E-09 2.5E-14 97.7 13.7 131 6-147 10-172 (398)
148 PRK05868 hypothetical protein; 99.1 2.3E-09 4.9E-14 94.9 15.3 130 8-150 2-161 (372)
149 PRK08294 phenol 2-monooxygenas 99.1 2.8E-09 6E-14 100.3 16.5 144 6-150 31-211 (634)
150 PRK06475 salicylate hydroxylas 99.1 1.7E-09 3.7E-14 96.8 14.1 134 8-150 3-168 (400)
151 PF01266 DAO: FAD dependent ox 99.1 5.7E-10 1.2E-14 97.8 10.6 60 78-150 144-204 (358)
152 TIGR03219 salicylate_mono sali 99.1 1.1E-09 2.5E-14 98.3 12.7 129 8-150 1-160 (414)
153 PF12831 FAD_oxidored: FAD dep 99.0 1.3E-10 2.8E-15 104.5 3.9 131 9-147 1-148 (428)
154 PF13450 NAD_binding_8: NAD(P) 99.0 3.3E-10 7.2E-15 74.3 4.7 50 12-61 1-50 (68)
155 PRK05192 tRNA uridine 5-carbox 99.0 2.6E-09 5.7E-14 98.1 12.2 132 6-149 3-157 (618)
156 PRK11259 solA N-methyltryptoph 99.0 6.5E-09 1.4E-13 92.2 13.8 64 78-154 146-209 (376)
157 TIGR01813 flavo_cyto_c flavocy 99.0 1.3E-08 2.9E-13 92.1 16.0 136 9-150 1-193 (439)
158 PLN02661 Putative thiazole syn 99.0 2.8E-09 6.2E-14 91.5 10.5 136 7-147 92-242 (357)
159 PF00070 Pyr_redox: Pyridine n 99.0 9.2E-09 2E-13 70.0 10.7 80 9-125 1-80 (80)
160 TIGR01377 soxA_mon sarcosine o 99.0 9E-09 2E-13 91.4 13.3 60 78-150 142-201 (380)
161 TIGR01789 lycopene_cycl lycope 99.0 8.2E-09 1.8E-13 91.1 12.3 133 9-162 1-149 (370)
162 PLN02985 squalene monooxygenas 99.0 3E-08 6.6E-13 91.0 16.1 137 6-150 42-209 (514)
163 PRK13369 glycerol-3-phosphate 99.0 2.3E-08 5.1E-13 91.9 15.4 138 5-150 4-216 (502)
164 PRK12266 glpD glycerol-3-phosp 99.0 2.2E-08 4.9E-13 92.0 15.1 39 6-44 5-43 (508)
165 PRK11728 hydroxyglutarate oxid 98.9 1.6E-08 3.4E-13 90.4 13.4 58 79-149 147-204 (393)
166 PRK06481 fumarate reductase fl 98.9 5.3E-08 1.1E-12 89.6 16.9 38 7-44 61-98 (506)
167 PF01134 GIDA: Glucose inhibit 98.9 5.1E-09 1.1E-13 91.4 9.6 125 9-147 1-150 (392)
168 PRK05976 dihydrolipoamide dehy 98.9 7.7E-08 1.7E-12 88.0 17.4 105 7-154 180-284 (472)
169 TIGR01350 lipoamide_DH dihydro 98.9 1.1E-07 2.4E-12 86.8 17.0 103 7-154 170-272 (461)
170 PLN02927 antheraxanthin epoxid 98.9 3.7E-08 7.9E-13 92.0 14.0 130 6-149 80-248 (668)
171 PRK11101 glpA sn-glycerol-3-ph 98.9 3.7E-08 7.9E-13 91.4 13.8 137 7-149 6-211 (546)
172 TIGR00136 gidA glucose-inhibit 98.9 4.6E-08 1E-12 89.9 14.1 132 8-149 1-154 (617)
173 KOG2820 FAD-dependent oxidored 98.9 2.8E-08 6E-13 83.3 11.4 145 1-155 1-218 (399)
174 PRK08274 tricarballylate dehyd 98.9 8.3E-08 1.8E-12 87.6 15.8 134 7-149 4-192 (466)
175 PTZ00383 malate:quinone oxidor 98.9 3.8E-08 8.3E-13 89.6 13.4 63 78-150 208-274 (497)
176 PRK07121 hypothetical protein; 98.9 1.1E-07 2.4E-12 87.4 16.4 38 7-44 20-57 (492)
177 PRK01747 mnmC bifunctional tRN 98.9 2.9E-08 6.2E-13 94.4 12.8 60 78-150 405-464 (662)
178 PRK12409 D-amino acid dehydrog 98.9 9.7E-08 2.1E-12 85.7 15.6 65 79-150 195-259 (410)
179 PF00890 FAD_binding_2: FAD bi 98.9 4.2E-08 9.2E-13 88.3 13.2 135 9-150 1-204 (417)
180 COG0579 Predicted dehydrogenas 98.9 3.3E-08 7.1E-13 87.4 12.0 135 6-150 2-212 (429)
181 COG1249 Lpd Pyruvate/2-oxoglut 98.9 5.9E-08 1.3E-12 87.0 13.9 107 5-156 171-277 (454)
182 TIGR03364 HpnW_proposed FAD de 98.9 3.4E-08 7.4E-13 87.3 12.3 34 8-41 1-34 (365)
183 TIGR02053 MerA mercuric reduct 98.9 2.2E-07 4.7E-12 84.8 17.8 104 7-154 166-269 (463)
184 TIGR03329 Phn_aa_oxid putative 98.9 3.1E-08 6.8E-13 90.2 12.2 60 79-152 181-240 (460)
185 KOG2415 Electron transfer flav 98.8 2E-08 4.4E-13 86.3 9.5 142 3-148 72-255 (621)
186 PRK04965 NADH:flavorubredoxin 98.8 8.7E-08 1.9E-12 85.1 14.1 100 7-152 141-240 (377)
187 PRK06416 dihydrolipoamide dehy 98.8 2.4E-07 5.1E-12 84.6 17.1 104 7-154 172-275 (462)
188 PRK13339 malate:quinone oxidor 98.8 1.3E-07 2.8E-12 86.0 15.0 38 6-43 5-44 (497)
189 PRK06912 acoL dihydrolipoamide 98.8 3E-07 6.5E-12 83.7 17.1 102 7-154 170-271 (458)
190 KOG2755 Oxidoreductase [Genera 98.8 5.8E-09 1.3E-13 84.2 5.2 152 9-219 1-165 (334)
191 TIGR01373 soxB sarcosine oxida 98.8 1.4E-07 3E-12 84.6 14.6 37 6-42 29-67 (407)
192 PLN02464 glycerol-3-phosphate 98.8 8.3E-08 1.8E-12 90.3 13.6 39 6-44 70-108 (627)
193 PRK07251 pyridine nucleotide-d 98.8 1.2E-07 2.7E-12 85.8 14.1 100 7-154 157-256 (438)
194 PRK08275 putative oxidoreducta 98.8 3E-07 6.4E-12 85.6 16.5 141 5-150 7-201 (554)
195 TIGR01320 mal_quin_oxido malat 98.8 1.7E-07 3.7E-12 85.5 13.7 66 79-150 176-241 (483)
196 PRK06370 mercuric reductase; V 98.8 2.6E-07 5.7E-12 84.3 14.6 104 7-154 171-274 (463)
197 COG0578 GlpA Glycerol-3-phosph 98.7 2.9E-07 6.3E-12 83.2 14.5 137 6-149 11-225 (532)
198 PRK07057 sdhA succinate dehydr 98.7 5.2E-07 1.1E-11 84.5 16.7 39 6-44 11-49 (591)
199 PRK06263 sdhA succinate dehydr 98.7 2.1E-07 4.4E-12 86.5 13.9 144 1-150 1-198 (543)
200 PRK06854 adenylylsulfate reduc 98.7 3.3E-07 7.2E-12 86.0 14.9 36 7-42 11-48 (608)
201 PRK06327 dihydrolipoamide dehy 98.7 7.5E-07 1.6E-11 81.5 16.9 106 6-154 182-287 (475)
202 PRK08958 sdhA succinate dehydr 98.7 5.1E-07 1.1E-11 84.5 15.9 44 1-44 1-44 (588)
203 PF04820 Trp_halogenase: Trypt 98.7 1.6E-08 3.6E-13 91.5 5.7 59 78-147 151-209 (454)
204 PRK05249 soluble pyridine nucl 98.7 2.6E-07 5.6E-12 84.3 13.6 101 7-154 175-275 (461)
205 PRK07804 L-aspartate oxidase; 98.7 2.5E-07 5.4E-12 85.8 13.6 138 7-150 16-211 (541)
206 PRK09754 phenylpropionate diox 98.7 1.6E-07 3.6E-12 83.8 12.0 99 7-152 144-242 (396)
207 PRK07818 dihydrolipoamide dehy 98.7 7.9E-07 1.7E-11 81.2 16.6 105 7-154 172-276 (466)
208 PRK07208 hypothetical protein; 98.7 4.8E-08 1E-12 89.5 8.5 49 6-54 3-51 (479)
209 PRK09078 sdhA succinate dehydr 98.7 2.2E-07 4.7E-12 87.1 12.7 39 6-44 11-49 (598)
210 PTZ00139 Succinate dehydrogena 98.7 2.6E-07 5.6E-12 86.9 13.1 38 7-44 29-66 (617)
211 KOG1335 Dihydrolipoamide dehyd 98.7 5.4E-07 1.2E-11 76.9 13.4 158 6-209 210-367 (506)
212 TIGR00551 nadB L-aspartate oxi 98.7 4E-07 8.7E-12 83.5 13.8 134 7-150 2-190 (488)
213 COG1233 Phytoene dehydrogenase 98.7 2.6E-08 5.7E-13 91.1 6.0 48 7-54 3-50 (487)
214 PRK06116 glutathione reductase 98.7 4.2E-07 9E-12 82.7 13.8 102 7-154 167-268 (450)
215 PRK07573 sdhA succinate dehydr 98.7 6.8E-07 1.5E-11 84.4 15.4 37 7-43 35-71 (640)
216 PTZ00367 squalene epoxidase; P 98.7 3.3E-07 7.1E-12 84.9 12.9 35 6-40 32-66 (567)
217 PLN00128 Succinate dehydrogena 98.7 3E-07 6.6E-12 86.5 12.9 38 7-44 50-87 (635)
218 PRK06115 dihydrolipoamide dehy 98.7 5.9E-07 1.3E-11 81.9 14.5 107 6-154 173-279 (466)
219 KOG0029 Amine oxidase [Seconda 98.7 2.9E-08 6.3E-13 90.2 5.7 40 5-44 13-52 (501)
220 PRK08641 sdhA succinate dehydr 98.7 1.5E-06 3.2E-11 81.4 17.1 38 7-44 3-40 (589)
221 TIGR01424 gluta_reduc_2 glutat 98.7 4.7E-07 1E-11 82.2 13.4 100 7-153 166-265 (446)
222 PF06039 Mqo: Malate:quinone o 98.7 1.8E-07 4E-12 82.2 10.1 67 79-151 179-246 (488)
223 PRK08401 L-aspartate oxidase; 98.7 4.7E-07 1E-11 82.6 13.2 34 8-41 2-35 (466)
224 PRK13977 myosin-cross-reactive 98.7 3.1E-07 6.6E-12 83.9 11.7 41 6-46 21-65 (576)
225 PRK05257 malate:quinone oxidor 98.6 9E-07 1.9E-11 81.0 14.8 66 79-150 181-247 (494)
226 PRK12839 hypothetical protein; 98.6 2.7E-06 5.8E-11 79.4 18.2 40 6-45 7-46 (572)
227 PRK08255 salicylyl-CoA 5-hydro 98.6 1.4E-07 3E-12 90.9 9.9 113 8-149 1-141 (765)
228 COG0665 DadA Glycine/D-amino a 98.6 4.7E-07 1E-11 80.6 12.7 38 6-43 3-40 (387)
229 PRK00711 D-amino acid dehydrog 98.6 5.2E-07 1.1E-11 81.2 12.9 33 9-41 2-34 (416)
230 PLN02507 glutathione reductase 98.6 6.7E-07 1.4E-11 82.2 13.6 101 7-154 203-303 (499)
231 PRK06452 sdhA succinate dehydr 98.6 1E-06 2.2E-11 82.2 14.6 39 6-44 4-42 (566)
232 TIGR01812 sdhA_frdA_Gneg succi 98.6 1.4E-06 3E-11 81.6 15.4 36 9-44 1-36 (566)
233 PRK07845 flavoprotein disulfid 98.6 8E-07 1.7E-11 81.1 13.6 101 7-154 177-277 (466)
234 PRK12842 putative succinate de 98.6 8.1E-07 1.8E-11 83.1 13.8 39 6-44 8-46 (574)
235 PRK06175 L-aspartate oxidase; 98.6 7.8E-07 1.7E-11 80.3 13.2 37 7-44 4-40 (433)
236 PRK07803 sdhA succinate dehydr 98.6 1.6E-06 3.4E-11 81.9 15.5 37 7-43 8-44 (626)
237 COG1252 Ndh NADH dehydrogenase 98.6 4.9E-07 1.1E-11 79.5 11.3 133 8-196 156-301 (405)
238 PRK12835 3-ketosteroid-delta-1 98.6 1.4E-06 3.1E-11 81.4 15.1 39 6-44 10-48 (584)
239 PRK07846 mycothione reductase; 98.6 7.9E-07 1.7E-11 80.8 13.1 101 7-155 166-266 (451)
240 PRK06292 dihydrolipoamide dehy 98.6 2.7E-06 5.8E-11 77.7 16.6 104 6-154 168-271 (460)
241 TIGR01421 gluta_reduc_1 glutat 98.6 1.2E-06 2.5E-11 79.6 14.1 103 7-154 166-268 (450)
242 PRK06467 dihydrolipoamide dehy 98.6 1.2E-06 2.5E-11 80.1 13.9 104 7-154 174-277 (471)
243 PRK14727 putative mercuric red 98.6 1.2E-06 2.7E-11 80.2 13.8 99 7-154 188-286 (479)
244 PRK08010 pyridine nucleotide-d 98.6 1.2E-06 2.5E-11 79.6 13.5 100 6-153 157-256 (441)
245 PLN02815 L-aspartate oxidase 98.6 1.4E-06 3E-11 81.4 14.3 37 7-44 29-65 (594)
246 PRK06134 putative FAD-binding 98.6 3.9E-06 8.5E-11 78.6 17.2 40 6-45 11-50 (581)
247 PRK09564 coenzyme A disulfide 98.6 8.7E-07 1.9E-11 80.5 12.5 99 7-152 149-247 (444)
248 TIGR01811 sdhA_Bsu succinate d 98.6 2.2E-06 4.7E-11 80.5 15.3 33 10-42 1-33 (603)
249 PRK14694 putative mercuric red 98.6 1.3E-06 2.8E-11 79.8 13.5 99 7-154 178-276 (468)
250 PRK08205 sdhA succinate dehydr 98.6 4.1E-06 8.8E-11 78.5 16.9 37 7-44 5-41 (583)
251 PRK12837 3-ketosteroid-delta-1 98.6 3.6E-06 7.8E-11 77.7 16.3 43 1-44 1-43 (513)
252 PRK05945 sdhA succinate dehydr 98.6 1.1E-06 2.3E-11 82.3 13.0 38 7-44 3-42 (575)
253 PTZ00306 NADH-dependent fumara 98.5 2.7E-06 5.9E-11 85.5 16.2 40 6-45 408-447 (1167)
254 PRK09231 fumarate reductase fl 98.5 1.6E-06 3.5E-11 81.1 13.6 38 7-44 4-43 (582)
255 TIGR03452 mycothione_red mycot 98.5 1.4E-06 3E-11 79.2 12.9 100 7-154 169-268 (452)
256 PRK07233 hypothetical protein; 98.5 3.4E-07 7.3E-12 82.7 8.7 40 9-48 1-40 (434)
257 TIGR01438 TGR thioredoxin and 98.5 2E-06 4.4E-11 78.7 13.7 103 7-154 180-282 (484)
258 KOG1346 Programmed cell death 98.5 5.2E-07 1.1E-11 77.7 9.1 193 7-241 178-401 (659)
259 PRK13512 coenzyme A disulfide 98.5 1E-06 2.2E-11 79.7 11.6 96 7-153 148-243 (438)
260 TIGR03385 CoA_CoA_reduc CoA-di 98.5 1.6E-06 3.5E-11 78.3 12.7 99 7-153 137-235 (427)
261 PRK06069 sdhA succinate dehydr 98.5 2.9E-06 6.2E-11 79.5 14.5 38 7-44 5-45 (577)
262 PRK11883 protoporphyrinogen ox 98.5 1.5E-07 3.3E-12 85.5 5.8 39 8-46 1-41 (451)
263 TIGR01176 fum_red_Fp fumarate 98.5 4.9E-06 1.1E-10 77.7 15.8 38 7-44 3-42 (580)
264 PRK13748 putative mercuric red 98.5 2E-06 4.3E-11 80.5 13.2 99 7-154 270-368 (561)
265 PTZ00058 glutathione reductase 98.5 2.7E-06 5.9E-11 78.9 13.7 103 7-154 237-339 (561)
266 PRK07843 3-ketosteroid-delta-1 98.5 8.8E-06 1.9E-10 75.9 17.1 40 5-44 5-44 (557)
267 PRK09077 L-aspartate oxidase; 98.5 4.2E-06 9.1E-11 77.7 14.7 38 6-44 7-44 (536)
268 PRK14989 nitrite reductase sub 98.5 1.7E-06 3.7E-11 83.9 12.4 103 7-153 145-247 (847)
269 PRK12845 3-ketosteroid-delta-1 98.5 1E-05 2.2E-10 75.3 17.0 39 6-45 15-53 (564)
270 PRK08071 L-aspartate oxidase; 98.5 3E-06 6.5E-11 78.1 13.3 37 7-44 3-39 (510)
271 KOG2614 Kynurenine 3-monooxyge 98.5 1.9E-06 4.2E-11 74.5 11.0 37 7-43 2-38 (420)
272 TIGR01423 trypano_reduc trypan 98.5 3.2E-06 6.9E-11 77.4 13.1 103 6-154 186-291 (486)
273 COG0445 GidA Flavin-dependent 98.5 4.6E-07 9.9E-12 80.9 7.2 134 7-150 4-159 (621)
274 PTZ00052 thioredoxin reductase 98.5 3.5E-06 7.6E-11 77.5 13.3 100 7-154 182-281 (499)
275 COG0562 Glf UDP-galactopyranos 98.5 7.6E-07 1.6E-11 74.4 8.0 75 8-94 2-78 (374)
276 COG3349 Uncharacterized conser 98.4 2.8E-07 6.1E-12 82.0 5.6 41 8-48 1-44 (485)
277 COG1148 HdrA Heterodisulfide r 98.4 5.1E-07 1.1E-11 79.2 6.9 39 7-45 124-162 (622)
278 PLN02576 protoporphyrinogen ox 98.4 5.2E-07 1.1E-11 83.1 7.5 40 6-45 11-51 (496)
279 COG0446 HcaD Uncharacterized N 98.4 3E-06 6.4E-11 75.9 12.2 102 7-152 136-238 (415)
280 PRK12843 putative FAD-binding 98.4 9.4E-06 2E-10 76.0 15.9 40 7-46 16-55 (578)
281 PF00070 Pyr_redox: Pyridine n 98.4 6.1E-07 1.3E-11 61.0 5.9 50 188-243 1-50 (80)
282 TIGR00137 gid_trmFO tRNA:m(5)U 98.4 7.6E-07 1.6E-11 79.1 8.1 35 9-43 2-36 (433)
283 TIGR02733 desat_CrtD C-3',4' d 98.4 4.5E-07 9.7E-12 83.4 6.9 39 8-46 2-40 (492)
284 PLN02268 probable polyamine ox 98.4 2.6E-07 5.6E-12 83.7 5.2 38 8-45 1-38 (435)
285 TIGR02374 nitri_red_nirB nitri 98.4 2.1E-06 4.6E-11 83.0 11.6 101 7-153 140-240 (785)
286 PRK07395 L-aspartate oxidase; 98.4 2.5E-06 5.4E-11 79.2 11.5 38 6-44 8-45 (553)
287 PRK12844 3-ketosteroid-delta-1 98.4 1.2E-05 2.5E-10 75.1 15.8 39 7-45 6-44 (557)
288 PLN02676 polyamine oxidase 98.4 5.7E-07 1.2E-11 82.3 7.0 48 6-53 25-73 (487)
289 TIGR00562 proto_IX_ox protopor 98.4 5E-07 1.1E-11 82.4 6.5 39 7-45 2-44 (462)
290 PRK08626 fumarate reductase fl 98.4 1.1E-05 2.4E-10 76.4 15.4 37 7-43 5-41 (657)
291 PRK12416 protoporphyrinogen ox 98.4 1.1E-06 2.4E-11 80.2 8.0 39 8-46 2-46 (463)
292 TIGR02734 crtI_fam phytoene de 98.4 4.9E-07 1.1E-11 83.4 5.6 37 10-46 1-37 (502)
293 COG1232 HemY Protoporphyrinoge 98.4 5.9E-07 1.3E-11 80.0 5.6 41 8-48 1-43 (444)
294 PTZ00153 lipoamide dehydrogena 98.4 9.4E-06 2E-10 76.5 13.8 111 7-155 312-431 (659)
295 TIGR02730 carot_isom carotene 98.3 7.7E-07 1.7E-11 81.9 6.2 41 8-48 1-41 (493)
296 PTZ00318 NADH dehydrogenase-li 98.3 1.4E-05 3E-10 72.2 14.2 91 8-147 174-278 (424)
297 PRK10262 thioredoxin reductase 98.3 9.2E-06 2E-10 70.5 12.5 106 7-154 146-251 (321)
298 KOG0685 Flavin-containing amin 98.3 7.8E-07 1.7E-11 78.1 5.4 40 7-46 21-61 (498)
299 TIGR00031 UDP-GALP_mutase UDP- 98.3 1E-06 2.3E-11 77.4 6.2 39 8-46 2-40 (377)
300 KOG1298 Squalene monooxygenase 98.3 3.4E-06 7.4E-11 72.2 8.8 136 7-150 45-209 (509)
301 PLN02546 glutathione reductase 98.3 1.4E-05 3E-10 74.3 13.4 103 6-154 251-353 (558)
302 PLN02568 polyamine oxidase 98.3 1.1E-06 2.3E-11 81.3 6.0 42 7-48 5-51 (539)
303 TIGR02485 CobZ_N-term precorri 98.3 8.1E-06 1.8E-10 73.9 11.5 60 80-149 122-183 (432)
304 KOG2404 Fumarate reductase, fl 98.3 7.8E-06 1.7E-10 68.5 9.4 39 8-46 10-48 (477)
305 PRK07512 L-aspartate oxidase; 98.3 1.5E-05 3.2E-10 73.6 12.4 34 6-41 8-41 (513)
306 TIGR02731 phytoene_desat phyto 98.2 1.3E-06 2.9E-11 79.4 5.4 37 9-45 1-37 (453)
307 TIGR03140 AhpF alkyl hydropero 98.2 1.7E-05 3.8E-10 73.3 12.4 101 7-154 352-453 (515)
308 COG1231 Monoamine oxidase [Ami 98.2 1.9E-06 4E-11 75.6 5.5 43 2-44 2-44 (450)
309 TIGR01292 TRX_reduct thioredox 98.2 2.7E-05 5.9E-10 66.6 12.8 99 7-153 141-240 (300)
310 COG1053 SdhA Succinate dehydro 98.2 6.4E-06 1.4E-10 76.1 9.0 40 5-44 4-43 (562)
311 KOG2852 Possible oxidoreductas 98.2 3.1E-05 6.6E-10 64.0 11.8 40 5-44 8-53 (380)
312 TIGR02061 aprA adenosine phosp 98.2 1.8E-05 3.9E-10 74.2 11.9 33 9-41 1-37 (614)
313 PRK13800 putative oxidoreducta 98.2 9E-05 1.9E-09 73.0 16.5 35 7-41 13-47 (897)
314 PF13434 K_oxygenase: L-lysine 98.2 2.3E-05 4.9E-10 68.4 11.1 134 6-147 189-339 (341)
315 COG2907 Predicted NAD/FAD-bind 98.2 2.2E-06 4.9E-11 72.4 4.6 45 2-47 3-47 (447)
316 PLN02529 lysine-specific histo 98.1 3.5E-06 7.6E-11 80.0 5.9 40 6-45 159-198 (738)
317 PTZ00363 rab-GDP dissociation 98.1 3.1E-06 6.6E-11 76.2 5.1 41 7-47 4-44 (443)
318 KOG1336 Monodehydroascorbate/f 98.1 3.5E-05 7.5E-10 68.0 10.6 107 7-157 213-319 (478)
319 PRK15317 alkyl hydroperoxide r 98.1 6.5E-05 1.4E-09 69.6 12.9 100 7-153 351-451 (517)
320 PLN02487 zeta-carotene desatur 98.1 5.8E-06 1.3E-10 76.7 5.9 40 7-46 75-114 (569)
321 TIGR02732 zeta_caro_desat caro 98.1 4.7E-06 1E-10 76.2 5.2 36 9-44 1-36 (474)
322 PLN02328 lysine-specific histo 98.1 6.7E-06 1.5E-10 78.6 5.9 40 6-45 237-276 (808)
323 COG2509 Uncharacterized FAD-de 98.0 5.5E-05 1.2E-09 66.5 10.4 59 81-150 173-231 (486)
324 PLN02612 phytoene desaturase 98.0 1.1E-05 2.4E-10 75.3 5.9 39 6-44 92-130 (567)
325 TIGR03169 Nterm_to_SelD pyridi 98.0 7.8E-05 1.7E-09 65.9 10.9 94 7-152 145-244 (364)
326 TIGR01316 gltA glutamate synth 98.0 0.00013 2.9E-09 66.3 12.5 34 7-40 272-305 (449)
327 PRK05335 tRNA (uracil-5-)-meth 98.0 1.1E-05 2.4E-10 71.4 5.2 35 8-42 3-37 (436)
328 PRK12831 putative oxidoreducta 98.0 0.00015 3.4E-09 66.1 12.7 35 6-40 280-314 (464)
329 TIGR02462 pyranose_ox pyranose 97.9 1.2E-05 2.6E-10 73.9 5.2 40 8-47 1-40 (544)
330 KOG2853 Possible oxidoreductas 97.9 0.00017 3.7E-09 61.1 11.3 34 7-40 86-123 (509)
331 PRK12834 putative FAD-binding 97.9 1.6E-05 3.4E-10 74.2 5.6 39 7-45 4-44 (549)
332 KOG3851 Sulfide:quinone oxidor 97.9 5.4E-05 1.2E-09 63.5 7.6 36 6-41 38-75 (446)
333 PLN03000 amine oxidase 97.9 2E-05 4.4E-10 75.6 5.8 41 7-47 184-224 (881)
334 KOG2311 NAD/FAD-utilizing prot 97.9 9.1E-05 2E-09 65.4 9.2 34 6-39 27-60 (679)
335 PRK12770 putative glutamate sy 97.9 0.00011 2.5E-09 64.6 10.2 33 8-40 173-206 (352)
336 KOG2844 Dimethylglycine dehydr 97.9 7.1E-05 1.5E-09 68.6 8.8 60 78-149 184-243 (856)
337 KOG1276 Protoporphyrinogen oxi 97.9 2.3E-05 5.1E-10 68.1 5.2 39 6-44 10-50 (491)
338 PLN02976 amine oxidase 97.8 2.4E-05 5.2E-10 78.0 5.7 43 6-48 692-734 (1713)
339 PRK01438 murD UDP-N-acetylmura 97.8 4.5E-05 9.8E-10 70.0 7.0 34 7-40 16-49 (480)
340 PRK12778 putative bifunctional 97.8 0.0012 2.6E-08 64.0 16.4 34 7-40 570-604 (752)
341 PF00732 GMC_oxred_N: GMC oxid 97.8 2.5E-05 5.3E-10 67.0 4.2 36 8-43 1-37 (296)
342 COG0029 NadB Aspartate oxidase 97.8 0.00025 5.4E-09 63.1 10.4 33 9-42 9-41 (518)
343 TIGR03143 AhpF_homolog putativ 97.8 0.00036 7.9E-09 65.2 11.9 35 7-41 143-177 (555)
344 PRK11749 dihydropyrimidine deh 97.7 0.00052 1.1E-08 62.6 12.4 101 7-152 273-388 (457)
345 KOG2495 NADH-dehydrogenase (ub 97.7 6.7E-05 1.5E-09 65.3 6.2 103 8-155 219-335 (491)
346 TIGR01318 gltD_gamma_fam gluta 97.7 0.0027 5.9E-08 58.1 16.3 35 7-41 282-317 (467)
347 KOG0042 Glycerol-3-phosphate d 97.7 7E-05 1.5E-09 67.0 5.5 42 6-47 66-107 (680)
348 PRK12769 putative oxidoreducta 97.6 0.0037 7.9E-08 59.7 16.6 34 7-40 468-502 (654)
349 PRK05329 anaerobic glycerol-3- 97.6 9.4E-05 2E-09 66.3 5.2 34 7-40 2-35 (422)
350 KOG2665 Predicted FAD-dependen 97.6 0.00081 1.8E-08 56.6 10.0 38 6-43 47-86 (453)
351 PRK12814 putative NADPH-depend 97.5 0.0064 1.4E-07 58.0 16.6 34 7-40 323-357 (652)
352 PRK12810 gltD glutamate syntha 97.5 0.0017 3.7E-08 59.5 12.0 110 7-152 281-401 (471)
353 PRK02106 choline dehydrogenase 97.5 0.00014 3.1E-09 68.0 5.0 34 7-40 5-39 (560)
354 TIGR01372 soxA sarcosine oxida 97.5 0.0013 2.8E-08 65.6 11.6 96 7-153 317-413 (985)
355 PF06100 Strep_67kDa_ant: Stre 97.4 0.0017 3.6E-08 58.4 10.8 41 7-47 2-46 (500)
356 COG3075 GlpB Anaerobic glycero 97.4 0.00021 4.6E-09 60.3 4.7 34 7-40 2-35 (421)
357 COG3486 IucD Lysine/ornithine 97.4 0.0024 5.1E-08 55.7 11.1 132 7-155 187-344 (436)
358 PRK12779 putative bifunctional 97.4 0.0026 5.6E-08 62.9 12.3 34 7-40 447-480 (944)
359 KOG3855 Monooxygenase involved 97.3 0.005 1.1E-07 53.8 11.9 34 6-39 35-72 (481)
360 PRK12809 putative oxidoreducta 97.3 0.018 3.8E-07 55.0 16.8 34 7-40 451-485 (639)
361 TIGR01317 GOGAT_sm_gam glutama 97.3 0.026 5.6E-07 52.0 17.2 35 7-41 283-318 (485)
362 COG2303 BetA Choline dehydroge 97.3 0.00033 7.3E-09 65.0 4.7 39 2-40 2-40 (542)
363 PLN02172 flavin-containing mon 97.3 0.0012 2.7E-08 60.0 8.2 34 7-40 204-237 (461)
364 TIGR03378 glycerol3P_GlpB glyc 97.2 0.00047 1E-08 61.3 4.9 33 8-40 1-33 (419)
365 COG3573 Predicted oxidoreducta 97.2 0.00053 1.2E-08 58.1 4.5 39 6-44 4-44 (552)
366 KOG2960 Protein involved in th 97.2 0.0001 2.2E-09 58.3 0.2 42 8-49 77-121 (328)
367 PRK09853 putative selenate red 97.2 0.0058 1.3E-07 60.2 12.0 34 7-40 668-703 (1019)
368 COG1206 Gid NAD(FAD)-utilizing 97.1 0.00088 1.9E-08 56.7 5.3 36 8-43 4-39 (439)
369 TIGR01810 betA choline dehydro 97.1 0.00048 1E-08 64.1 4.0 32 9-40 1-33 (532)
370 KOG1346 Programmed cell death 97.1 0.002 4.4E-08 56.2 7.2 101 6-153 346-451 (659)
371 KOG0405 Pyridine nucleotide-di 97.0 0.0029 6.3E-08 54.0 7.6 105 5-155 187-291 (478)
372 KOG3923 D-aspartate oxidase [A 97.0 0.0012 2.5E-08 55.1 5.1 34 7-40 3-43 (342)
373 KOG4254 Phytoene desaturase [C 97.0 0.00061 1.3E-08 59.9 3.6 39 6-44 13-51 (561)
374 PRK12775 putative trifunctiona 97.0 0.012 2.6E-07 58.8 12.8 34 7-40 571-605 (1006)
375 COG0492 TrxB Thioredoxin reduc 97.0 0.011 2.4E-07 50.7 11.0 98 7-153 143-240 (305)
376 PLN02785 Protein HOTHEAD 97.0 0.0011 2.3E-08 62.2 5.1 35 6-41 54-88 (587)
377 PRK12771 putative glutamate sy 96.7 0.047 1E-06 51.3 14.0 34 7-40 267-301 (564)
378 PRK13984 putative oxidoreducta 96.7 0.068 1.5E-06 50.7 15.2 31 7-37 418-454 (604)
379 PF01210 NAD_Gly3P_dh_N: NAD-d 96.7 0.0018 4E-08 49.9 3.9 32 9-40 1-32 (157)
380 TIGR03315 Se_ygfK putative sel 96.7 0.025 5.4E-07 56.1 12.4 35 6-40 665-701 (1012)
381 COG0569 TrkA K+ transport syst 96.6 0.0029 6.3E-08 51.9 4.6 34 8-41 1-34 (225)
382 PF00996 GDI: GDP dissociation 96.5 0.0032 6.8E-08 56.5 4.4 42 7-48 4-45 (438)
383 PF13450 NAD_binding_8: NAD(P) 96.5 0.0033 7.1E-08 41.0 3.3 29 191-219 1-29 (68)
384 PF02737 3HCDH_N: 3-hydroxyacy 96.5 0.0031 6.7E-08 49.8 3.8 32 9-40 1-32 (180)
385 PF13241 NAD_binding_7: Putati 96.4 0.0036 7.9E-08 44.5 3.2 35 184-218 5-39 (103)
386 PRK02705 murD UDP-N-acetylmura 96.4 0.0042 9.1E-08 56.7 4.4 34 9-42 2-35 (459)
387 PF03721 UDPG_MGDP_dh_N: UDP-g 96.3 0.0037 8.1E-08 49.6 3.4 34 8-41 1-34 (185)
388 PRK07066 3-hydroxybutyryl-CoA 96.3 0.0073 1.6E-07 52.2 5.3 34 7-40 7-40 (321)
389 COG1251 NirB NAD(P)H-nitrite r 96.3 0.013 2.9E-07 54.9 6.9 101 7-153 145-245 (793)
390 PF13241 NAD_binding_7: Putati 96.2 0.0049 1.1E-07 43.9 3.3 35 6-40 6-40 (103)
391 PF00743 FMO-like: Flavin-bind 96.2 0.017 3.6E-07 53.7 7.6 35 6-40 182-216 (531)
392 PRK05329 anaerobic glycerol-3- 96.2 0.052 1.1E-06 48.9 10.4 94 11-149 219-318 (422)
393 PRK05335 tRNA (uracil-5-)-meth 96.2 0.005 1.1E-07 54.9 3.8 33 187-219 3-35 (436)
394 PRK07819 3-hydroxybutyryl-CoA 96.2 0.0079 1.7E-07 51.3 4.8 34 8-41 6-39 (286)
395 TIGR01470 cysG_Nterm siroheme 96.2 0.01 2.2E-07 47.9 5.2 34 7-40 9-42 (205)
396 KOG1238 Glucose dehydrogenase/ 96.2 0.0065 1.4E-07 56.1 4.5 37 6-42 56-93 (623)
397 PF01262 AlaDh_PNT_C: Alanine 96.2 0.0088 1.9E-07 46.7 4.7 35 6-40 19-53 (168)
398 PF01488 Shikimate_DH: Shikima 96.2 0.013 2.9E-07 43.9 5.5 35 6-40 11-46 (135)
399 KOG4716 Thioredoxin reductase 96.1 0.021 4.6E-07 48.8 6.9 101 7-147 198-298 (503)
400 PF01593 Amino_oxidase: Flavin 96.1 0.0064 1.4E-07 54.4 4.1 40 99-148 225-264 (450)
401 PRK06719 precorrin-2 dehydroge 96.1 0.012 2.5E-07 45.4 4.9 34 6-39 12-45 (157)
402 TIGR00137 gid_trmFO tRNA:m(5)U 96.0 0.0063 1.4E-07 54.5 3.6 32 188-219 2-33 (433)
403 PRK14106 murD UDP-N-acetylmura 96.0 0.011 2.5E-07 53.8 5.4 34 7-40 5-38 (450)
404 COG1004 Ugd Predicted UDP-gluc 95.9 0.0098 2.1E-07 51.9 4.2 33 8-40 1-33 (414)
405 PRK06129 3-hydroxyacyl-CoA deh 95.9 0.011 2.4E-07 51.0 4.5 33 8-40 3-35 (308)
406 PRK06719 precorrin-2 dehydroge 95.9 0.011 2.4E-07 45.5 3.9 36 183-218 10-45 (157)
407 TIGR03862 flavo_PP4765 unchara 95.9 0.06 1.3E-06 47.6 8.9 60 79-151 84-143 (376)
408 PLN02852 ferredoxin-NADP+ redu 95.8 0.016 3.5E-07 53.0 5.3 35 185-219 25-61 (491)
409 PRK09260 3-hydroxybutyryl-CoA 95.8 0.014 3E-07 49.9 4.6 33 8-40 2-34 (288)
410 PTZ00188 adrenodoxin reductase 95.7 0.019 4.1E-07 52.2 5.3 35 185-219 38-73 (506)
411 PRK06718 precorrin-2 dehydroge 95.7 0.021 4.5E-07 46.0 5.1 34 6-39 9-42 (202)
412 PRK08293 3-hydroxybutyryl-CoA 95.7 0.016 3.5E-07 49.4 4.6 33 8-40 4-36 (287)
413 PF02558 ApbA: Ketopantoate re 95.7 0.018 3.9E-07 43.9 4.4 31 10-40 1-31 (151)
414 COG1148 HdrA Heterodisulfide r 95.6 0.016 3.5E-07 51.8 4.5 36 186-221 124-159 (622)
415 PRK04148 hypothetical protein; 95.6 0.012 2.7E-07 43.6 3.2 83 7-98 17-105 (134)
416 TIGR01470 cysG_Nterm siroheme 95.6 0.016 3.4E-07 46.8 4.0 36 184-219 7-42 (205)
417 PRK07530 3-hydroxybutyryl-CoA 95.6 0.02 4.3E-07 49.0 4.9 33 8-40 5-37 (292)
418 PRK06249 2-dehydropantoate 2-r 95.6 0.024 5.1E-07 49.1 5.4 34 7-40 5-38 (313)
419 TIGR00518 alaDH alanine dehydr 95.6 0.019 4.1E-07 50.8 4.8 35 6-40 166-200 (370)
420 PRK06035 3-hydroxyacyl-CoA deh 95.5 0.018 4E-07 49.2 4.4 33 8-40 4-36 (291)
421 PRK06718 precorrin-2 dehydroge 95.5 0.017 3.7E-07 46.5 3.9 37 183-219 7-43 (202)
422 PRK05708 2-dehydropantoate 2-r 95.5 0.025 5.5E-07 48.7 5.2 34 7-40 2-35 (305)
423 TIGR03197 MnmC_Cterm tRNA U-34 95.4 0.045 9.7E-07 48.7 6.7 61 78-151 132-192 (381)
424 PRK09424 pntA NAD(P) transhydr 95.4 0.021 4.6E-07 52.3 4.6 35 6-40 164-198 (509)
425 PRK07236 hypothetical protein; 95.4 0.019 4.2E-07 51.1 4.1 34 186-219 6-39 (386)
426 PRK06522 2-dehydropantoate 2-r 95.4 0.026 5.6E-07 48.5 4.8 32 9-40 2-33 (304)
427 KOG4405 GDP dissociation inhib 95.3 0.021 4.4E-07 50.0 4.0 48 5-52 6-53 (547)
428 PRK12409 D-amino acid dehydrog 95.3 0.019 4.2E-07 51.5 4.1 33 187-219 2-34 (410)
429 PF01494 FAD_binding_3: FAD bi 95.3 0.02 4.4E-07 49.9 4.0 32 188-219 3-34 (356)
430 PF07992 Pyr_redox_2: Pyridine 95.2 0.02 4.4E-07 45.7 3.5 32 188-219 1-32 (201)
431 COG0493 GltD NADPH-dependent g 95.2 0.043 9.3E-07 49.8 5.8 61 184-245 121-185 (457)
432 PRK12921 2-dehydropantoate 2-r 95.2 0.033 7.1E-07 47.9 4.8 31 9-39 2-32 (305)
433 PF01488 Shikimate_DH: Shikima 95.2 0.034 7.4E-07 41.7 4.3 37 183-219 9-46 (135)
434 PRK06567 putative bifunctional 95.2 0.026 5.6E-07 55.4 4.5 35 184-218 381-415 (1028)
435 PRK05808 3-hydroxybutyryl-CoA 95.1 0.031 6.6E-07 47.6 4.5 33 8-40 4-36 (282)
436 PRK11064 wecC UDP-N-acetyl-D-m 95.1 0.029 6.3E-07 50.5 4.6 34 8-41 4-37 (415)
437 PF01210 NAD_Gly3P_dh_N: NAD-d 95.1 0.017 3.7E-07 44.5 2.7 32 188-219 1-32 (157)
438 PF00899 ThiF: ThiF family; I 95.1 0.028 6.1E-07 42.0 3.8 34 7-40 2-36 (135)
439 PRK14619 NAD(P)H-dependent gly 95.1 0.04 8.8E-07 47.5 5.2 34 7-40 4-37 (308)
440 PRK14618 NAD(P)H-dependent gly 95.1 0.041 8.8E-07 47.9 5.2 33 8-40 5-37 (328)
441 COG1635 THI4 Ribulose 1,5-bisp 95.1 0.041 8.8E-07 44.3 4.6 37 183-219 27-63 (262)
442 cd01075 NAD_bind_Leu_Phe_Val_D 95.0 0.054 1.2E-06 43.6 5.4 35 6-40 27-61 (200)
443 PRK06847 hypothetical protein; 95.0 0.028 6.1E-07 49.7 4.1 34 186-219 4-37 (375)
444 KOG0029 Amine oxidase [Seconda 95.0 0.033 7.1E-07 51.2 4.4 36 184-219 13-48 (501)
445 PRK08229 2-dehydropantoate 2-r 94.9 0.043 9.4E-07 48.0 5.0 33 8-40 3-35 (341)
446 PRK01438 murD UDP-N-acetylmura 94.9 0.035 7.5E-07 51.1 4.6 36 184-219 14-49 (480)
447 PF02254 TrkA_N: TrkA-N domain 94.9 0.036 7.9E-07 40.1 3.8 31 10-40 1-31 (116)
448 TIGR02352 thiamin_ThiO glycine 94.9 0.25 5.4E-06 42.8 9.8 63 77-152 133-196 (337)
449 PRK08268 3-hydroxy-acyl-CoA de 94.9 0.044 9.6E-07 50.6 5.1 35 7-41 7-41 (507)
450 cd05311 NAD_bind_2_malic_enz N 94.9 0.052 1.1E-06 44.5 5.0 35 6-40 24-61 (226)
451 PRK05868 hypothetical protein; 94.9 0.029 6.2E-07 49.8 3.7 33 187-219 2-34 (372)
452 PLN02545 3-hydroxybutyryl-CoA 94.8 0.045 9.8E-07 46.9 4.8 33 8-40 5-37 (295)
453 TIGR02354 thiF_fam2 thiamine b 94.8 0.048 1E-06 43.8 4.6 35 6-40 20-55 (200)
454 PRK04690 murD UDP-N-acetylmura 94.8 0.041 8.9E-07 50.4 4.7 34 7-40 8-41 (468)
455 PRK06130 3-hydroxybutyryl-CoA 94.8 0.051 1.1E-06 46.9 5.1 33 8-40 5-37 (311)
456 PRK08306 dipicolinate synthase 94.8 0.047 1E-06 46.8 4.8 35 6-40 151-185 (296)
457 COG0686 Ald Alanine dehydrogen 94.8 0.031 6.8E-07 47.2 3.5 35 6-40 167-201 (371)
458 PRK08163 salicylate hydroxylas 94.7 0.035 7.7E-07 49.5 4.0 34 186-219 4-37 (396)
459 PRK12549 shikimate 5-dehydroge 94.7 0.052 1.1E-06 46.2 4.8 34 7-40 127-161 (284)
460 TIGR03026 NDP-sugDHase nucleot 94.7 0.041 8.8E-07 49.5 4.3 33 9-41 2-34 (411)
461 PF00056 Ldh_1_N: lactate/mala 94.7 0.066 1.4E-06 40.4 4.8 33 8-40 1-36 (141)
462 PF01266 DAO: FAD dependent ox 94.7 0.037 8.1E-07 48.2 4.0 32 188-219 1-32 (358)
463 PRK07233 hypothetical protein; 94.7 0.032 6.9E-07 50.4 3.6 32 188-219 1-32 (434)
464 TIGR01373 soxB sarcosine oxida 94.7 0.046 9.9E-07 49.1 4.5 49 171-219 15-65 (407)
465 PRK11259 solA N-methyltryptoph 94.6 0.037 8.1E-07 49.0 3.8 33 187-219 4-36 (376)
466 cd00401 AdoHcyase S-adenosyl-L 94.6 0.059 1.3E-06 48.2 5.0 34 7-40 202-235 (413)
467 PRK06753 hypothetical protein; 94.6 0.038 8.2E-07 48.9 3.9 32 188-219 2-33 (373)
468 cd05292 LDH_2 A subgroup of L- 94.6 0.057 1.2E-06 46.6 4.8 33 9-41 2-36 (308)
469 PRK14620 NAD(P)H-dependent gly 94.6 0.056 1.2E-06 47.0 4.8 32 9-40 2-33 (326)
470 TIGR01763 MalateDH_bact malate 94.6 0.068 1.5E-06 46.0 5.2 33 8-40 2-35 (305)
471 PF03446 NAD_binding_2: NAD bi 94.5 0.058 1.3E-06 41.8 4.3 33 8-40 2-34 (163)
472 TIGR02964 xanthine_xdhC xanthi 94.5 0.066 1.4E-06 44.5 4.9 36 6-41 99-134 (246)
473 PF13478 XdhC_C: XdhC Rossmann 94.5 0.036 7.9E-07 41.5 3.0 32 10-41 1-32 (136)
474 KOG1399 Flavin-containing mono 94.5 0.039 8.5E-07 49.9 3.7 34 186-219 6-39 (448)
475 PRK01710 murD UDP-N-acetylmura 94.5 0.056 1.2E-06 49.4 4.7 34 7-40 14-47 (458)
476 PRK11883 protoporphyrinogen ox 94.5 0.042 9.1E-07 49.9 3.9 33 187-219 1-35 (451)
477 PRK03369 murD UDP-N-acetylmura 94.4 0.057 1.2E-06 49.8 4.7 34 7-40 12-45 (488)
478 TIGR01377 soxA_mon sarcosine o 94.4 0.044 9.4E-07 48.6 3.8 32 188-219 2-33 (380)
479 cd01080 NAD_bind_m-THF_DH_Cycl 94.4 0.086 1.9E-06 41.1 5.0 34 6-39 43-77 (168)
480 PRK07364 2-octaprenyl-6-methox 94.4 0.042 9.1E-07 49.4 3.6 34 186-219 18-51 (415)
481 TIGR02032 GG-red-SF geranylger 94.4 0.047 1E-06 46.3 3.8 32 188-219 2-33 (295)
482 PRK00094 gpsA NAD(P)H-dependen 94.4 0.061 1.3E-06 46.7 4.5 33 8-40 2-34 (325)
483 PRK06475 salicylate hydroxylas 94.4 0.045 9.8E-07 49.0 3.8 33 187-219 3-35 (400)
484 cd01080 NAD_bind_m-THF_DH_Cycl 94.3 0.087 1.9E-06 41.0 4.8 37 183-219 41-78 (168)
485 COG0771 MurD UDP-N-acetylmuram 94.2 0.065 1.4E-06 48.3 4.4 37 6-42 6-42 (448)
486 PF02737 3HCDH_N: 3-hydroxyacy 94.2 0.053 1.2E-06 42.8 3.5 32 188-219 1-32 (180)
487 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.2 0.062 1.3E-06 49.6 4.4 35 7-41 5-39 (503)
488 TIGR00561 pntA NAD(P) transhyd 94.2 0.067 1.5E-06 49.0 4.6 34 7-40 164-197 (511)
489 COG0562 Glf UDP-galactopyranos 94.2 0.068 1.5E-06 45.5 4.1 32 188-219 3-34 (374)
490 PRK05562 precorrin-2 dehydroge 94.2 0.074 1.6E-06 43.3 4.3 35 184-218 23-57 (223)
491 COG0578 GlpA Glycerol-3-phosph 94.2 0.13 2.8E-06 47.3 6.2 55 186-240 12-77 (532)
492 PRK00066 ldh L-lactate dehydro 94.1 0.11 2.4E-06 44.9 5.5 35 6-40 5-41 (315)
493 PRK07045 putative monooxygenas 94.1 0.057 1.2E-06 48.1 3.8 33 187-219 6-38 (388)
494 TIGR02853 spore_dpaA dipicolin 94.1 0.083 1.8E-06 45.0 4.6 35 6-40 150-184 (287)
495 PRK04308 murD UDP-N-acetylmura 94.1 0.1 2.2E-06 47.6 5.4 35 7-41 5-39 (445)
496 PRK12475 thiamine/molybdopteri 94.1 0.084 1.8E-06 46.1 4.7 34 7-40 24-58 (338)
497 PRK07588 hypothetical protein; 94.0 0.058 1.3E-06 48.1 3.8 32 188-219 2-33 (391)
498 PRK02472 murD UDP-N-acetylmura 94.0 0.08 1.7E-06 48.2 4.8 34 7-40 5-38 (447)
499 PRK09126 hypothetical protein; 94.0 0.054 1.2E-06 48.3 3.6 33 187-219 4-36 (392)
500 PLN02268 probable polyamine ox 94.0 0.059 1.3E-06 48.9 3.9 33 187-219 1-33 (435)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=1.3e-48 Score=354.20 Aligned_cols=268 Identities=33% Similarity=0.547 Sum_probs=174.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC---------CCCCcEEEecCCccccCCCCCCCCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK---------YSYDRLRLHLAKQFCQLPHLPFPSSYPMF 77 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (294)
+++|+|||||++||++|+.|.+.|+++++|||++.+||+|++ ..|+++.++.++.++.|+++|+|++++.|
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 369999999999999999999999999999999999999985 35889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCC---CCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA---TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+++.++.+|++.|++++++..+|+|+++|+++++.++ .+.|.|++++.+ ..++ ..||+||+|||+++.|++|
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g----~~~~-~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDG----KEET-EEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTT----EEEE-EEECEEEEEE-SSSCESB-
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCC----eEEE-EEeCeEEEcCCCcCCCCCC
Confidence 9999999999999999999999999999999988653 368999886532 2345 5799999999999999999
Q ss_pred C--CCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchh-----------
Q 022626 155 D--IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMV----------- 221 (294)
Q Consensus 155 ~--i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~----------- 221 (294)
. +||++.| +|.++|+.+|++++.+++|+|+|||+|+||+|+|.+|+..+++|++++|++.|
T Consensus 156 ~~~~~G~e~F------~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P 229 (531)
T PF00743_consen 156 EPSFPGLEKF------KGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYP 229 (531)
T ss_dssp ----CTGGGH------CSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------------
T ss_pred hhhhhhhhcC------CeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccc
Confidence 5 9999999 99999999999999999999999999999999999999999999999999933
Q ss_pred -------hhhhHhhccCCHHHHHHHHHHHHHHHhcCccccCCCCCCCCcchhcccCCCceEEccchhhhhhcCeEEEee
Q 022626 222 -------YLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVIN 293 (294)
Q Consensus 222 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~p~~~~~~~~~i~~G~i~v~~ 293 (294)
+....+.+.+|..+.+.+.+......+ +...+|+. |.++.+. +.|++++.+++.|.+|+|++||
T Consensus 230 ~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl~-p~~~~~~------~~~~ind~l~~~i~~G~i~vk~ 300 (531)
T PF00743_consen 230 FDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRF-DHENYGLK-PKHRFFS------QHPTINDELPNRIRSGRIKVKP 300 (531)
T ss_dssp -----------------------------------------------------------------------------EE
T ss_pred cccccccccccccccccccccccccccccccccc-cccccccc-ccccccc------cccccccccccccccccccccc
Confidence 111112223444443333322222222 45567774 6655443 7899999999999999999998
No 2
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=285.08 Aligned_cols=201 Identities=35% Similarity=0.632 Sum_probs=188.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (294)
..++|+|||||++|+++|.+|.++|.+ ++||||++.+||+|+.++|++++++.++..+.|++.|++ +...++...++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~~ 85 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEIK 85 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccHH
Confidence 457999999999999999999999998 999999999999999999999999999999999999997 445677777799
Q ss_pred HHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022626 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (294)
Q Consensus 85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~ 164 (294)
+|+..+++++++..++.+++.|+.+.++++++.|.|+++++.. .+ +.+|+||+|||+++.|++|.|+|.+.|
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~-----~~-~~a~~vV~ATG~~~~P~iP~~~G~~~f-- 157 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT-----GE-LTADFVVVATGHLSEPYIPDFAGLDEF-- 157 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe-----ee-EecCEEEEeecCCCCCCCCCCCCccCC--
Confidence 9999999999999999999999999999888899999998643 34 579999999999999999999999999
Q ss_pred CCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.|.++|+.++.+...+++|+|+|||+|+||+|+|.+|.+.|++||++.|++
T Consensus 158 ----~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 158 ----KGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred ----CceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 999999999999999999999999999999999999999999999999999
No 3
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=4.8e-38 Score=281.93 Aligned_cols=202 Identities=26% Similarity=0.439 Sum_probs=182.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC--------------------CCCcEEEecCCccccC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------------------SYDRLRLHLAKQFCQL 65 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~--------------------~~~~~~~~~~~~~~~~ 65 (294)
..++|+|||||++||+||+.|++.|++|+|||+++.+||.|.+. +|.+++++.|+..+.|
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 45899999999999999999999999999999999999999752 4778889999999999
Q ss_pred CCCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEee
Q 022626 66 PHLPFPSS-------YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (294)
Q Consensus 66 ~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 138 (294)
+++|++.. .+.|+++.++.+|++++++++++..+|+++++|++++..+ +.|.|++.+++. ...+ ..|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~---~~~~-~~~ 162 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGG---FSKD-EIF 162 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCC---ceEE-EEc
Confidence 99988653 3678999999999999999999998889999999998754 689999875421 1235 689
Q ss_pred CEEEEccCCCCCCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEcc
Q 022626 139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (294)
Q Consensus 139 d~vv~AtG~~~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~ 218 (294)
|+||+|||+++.|++|++||++.| .|.++|+..++.+..+++|+|+|||+|.||+|+|.+|...+++|++++|+
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~~f------~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcccC------CceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999997
Q ss_pred c
Q 022626 219 P 219 (294)
Q Consensus 219 ~ 219 (294)
+
T Consensus 237 ~ 237 (461)
T PLN02172 237 S 237 (461)
T ss_pred c
Confidence 5
No 4
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-38 Score=279.29 Aligned_cols=201 Identities=35% Similarity=0.559 Sum_probs=183.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC--------C-CCcEEEecCCccccCCCCCCCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------S-YDRLRLHLAKQFCQLPHLPFPSSYPM 76 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (294)
.+++|+|||||||||++|+.|.++|+++++|||.+.+||+|.+. . |.+++++.|+.++.++++|+++..+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 36799999999999999999999999999999999999999987 5 99999999999999999999999666
Q ss_pred C-CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022626 77 F-VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (294)
Q Consensus 77 ~-~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~ 155 (294)
+ +++.++.+||+.||++|++..+|+|+++|..++...+ +.|.|.+.+..+. ... .-||.|++|||++..|++|.
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~---~~~-~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ---IEE-EIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc---eeE-EEeeEEEEcccCcCCCCCCc
Confidence 5 8999999999999999999999999999988876543 7899999875431 245 68999999999987799999
Q ss_pred CCC--ccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEc
Q 022626 156 IRG--LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217 (294)
Q Consensus 156 i~g--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r 217 (294)
++| ++.| +|+++|+.+|+.++.+.+|+|+|||+|+||+|++.+++..+++|+++.+
T Consensus 160 ~~g~~~~~f------~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~ 217 (448)
T KOG1399|consen 160 IPGPGIESF------KGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV 217 (448)
T ss_pred CCCCchhhc------CCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee
Confidence 988 6788 9999999999999999999999999999999999999999999988865
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=100.00 E-value=1.3e-33 Score=228.96 Aligned_cols=189 Identities=35% Similarity=0.607 Sum_probs=137.4
Q ss_pred EEECCChHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCcEEEecCCcc---ccCCCCCCCC--------CCCCCC
Q 022626 11 IMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQF---CQLPHLPFPS--------SYPMFV 78 (294)
Q Consensus 11 vIIGaG~aGl~aA~~L~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~ 78 (294)
+||||||+||++|..|.++|.+ ++|||+++.+||.|... +....+..+..+ +.++++.... ....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 7999999999999999999998 99999999999999842 333333333322 1222221110 124568
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022626 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (294)
Q Consensus 79 ~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g 158 (294)
+.+++.+|++++++++++.. +++++|+++.+++ +.|.|+++++ ++ +.||+||+|||.++.|..|++||
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i--~~~~~V~~v~~~~--~~w~v~~~~~-------~~-~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEI--RFNTRVESVRRDG--DGWTVTTRDG-------RT-IRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGE--ETS--EEEEEEET--TTEEEEETTS--------E-EEEEEEEE---SSCSB---S-TT
T ss_pred CHHHHHHHHHHHHhhcCccc--ccCCEEEEEEEec--cEEEEEEEec-------ce-eeeeeEEEeeeccCCCCcccccc
Confidence 99999999999999999874 9999999999986 5599999875 46 89999999999988999999999
Q ss_pred ccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccch
Q 022626 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPM 220 (294)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~ 220 (294)
..+ . ..+|+.++.+...+++++|+|||+|.||+|+|..|++.|++|++++|++.
T Consensus 148 -~~~------~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 148 -SAF------R-PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp -GGC------S-EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred -ccc------c-ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 222 3 78999999888888999999999999999999999999999999999974
No 6
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.93 E-value=3.1e-24 Score=184.23 Aligned_cols=175 Identities=25% Similarity=0.378 Sum_probs=135.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL 87 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (294)
+||+|||||++|+++|..|.+.|++|+|||+++ .||.|.... .+..++.+ +......++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 589999999999999999999999999999987 666543221 01111111 1223556889999
Q ss_pred HHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCC
Q 022626 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSAT 167 (294)
Q Consensus 88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~~ 167 (294)
.++++++++.. ++ ++|++++..+ ..|.|++.++ .+ +.||+||+||| +.|..|.+||.+.+
T Consensus 64 ~~~~~~~gv~~--~~-~~v~~v~~~~--~~~~v~~~~~-------~~-~~~d~liiAtG--~~~~~~~i~g~~~~----- 123 (300)
T TIGR01292 64 KEQAVKFGAEI--IY-EEVIKVDLSD--RPFKVKTGDG-------KE-YTAKAVIIATG--ASARKLGIPGEDEF----- 123 (300)
T ss_pred HHHHHHcCCeE--EE-EEEEEEEecC--CeeEEEeCCC-------CE-EEeCEEEECCC--CCcccCCCCChhhc-----
Confidence 99999998776 66 7899988754 5688887653 46 89999999999 77888889998766
Q ss_pred CCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccch
Q 022626 168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPM 220 (294)
Q Consensus 168 ~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~ 220 (294)
.+..++.....+.....+++++|||+|.+|+|+|..|.+.+.+|++++|++.
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~ 175 (300)
T TIGR01292 124 -LGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK 175 (300)
T ss_pred -CCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence 5555555544444455689999999999999999999999999999999863
No 7
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-24 Score=182.70 Aligned_cols=175 Identities=24% Similarity=0.369 Sum_probs=138.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCC-eEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCC---CCHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMF---VSRA 81 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 81 (294)
..+||+||||||+||+||.++.+.+.+ ++|+|+. .+||... .. ..-+++|.+ .+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~~------~~-------------~~venypg~~~~~~g~ 61 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQLT------KT-------------TDVENYPGFPGGILGP 61 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCccc------cc-------------eeecCCCCCccCCchH
Confidence 358999999999999999999999998 5555554 3443211 10 011122333 3678
Q ss_pred HHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022626 82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS 161 (294)
Q Consensus 82 ~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~ 161 (294)
++.+.+.+.+..++.+. .. ..|..++... +.+.|.+++ .+ +++++||+||| ..++.|.+||..+
T Consensus 62 ~L~~~~~~~a~~~~~~~--~~-~~v~~v~~~~--~~F~v~t~~--------~~-~~ak~vIiAtG--~~~~~~~~~~e~e 125 (305)
T COG0492 62 ELMEQMKEQAEKFGVEI--VE-DEVEKVELEG--GPFKVKTDK--------GT-YEAKAVIIATG--AGARKLGVPGEEE 125 (305)
T ss_pred HHHHHHHHHHhhcCeEE--EE-EEEEEEeecC--ceEEEEECC--------Ce-EEEeEEEECcC--CcccCCCCCcchh
Confidence 89999999999888775 44 6677776544 278888876 35 89999999999 7777788888778
Q ss_pred cccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchhhh
Q 022626 162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVYL 223 (294)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~~ 223 (294)
| .|+-+|++..++. .+++++|+|||+|++|+|.|..|.+.+++||+++|++-++.
T Consensus 126 ~------~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra 180 (305)
T COG0492 126 F------EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA 180 (305)
T ss_pred h------cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc
Confidence 8 8999999999998 88899999999999999999999999999999999975543
No 8
>PRK10262 thioredoxin reductase; Provisional
Probab=99.92 E-value=1.1e-23 Score=182.65 Aligned_cols=177 Identities=18% Similarity=0.305 Sum_probs=137.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHH
Q 022626 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (294)
Q Consensus 4 ~~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (294)
+...+||+||||||+|++||..|.+.|+++++||+. ..||.+.... ....++. .+...+.+++
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~----------~~~~~~~------~~~~~~~~~~ 65 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT----------EVENWPG------DPNDLTGPLL 65 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc----------eECCCCC------CCCCCCHHHH
Confidence 345789999999999999999999999999999965 5676543210 0111111 1223466788
Q ss_pred HHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022626 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (294)
Q Consensus 84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~ 163 (294)
.+++.+++..++.+. +++ +|+.++..+ +.|.+..+. .. +.||+||+||| +.|..|++||.+.|
T Consensus 66 ~~~~~~~~~~~~~~~--~~~-~v~~v~~~~--~~~~v~~~~--------~~-~~~d~vilAtG--~~~~~~~i~g~~~~- 128 (321)
T PRK10262 66 MERMHEHATKFETEI--IFD-HINKVDLQN--RPFRLTGDS--------GE-YTCDALIIATG--ASARYLGLPSEEAF- 128 (321)
T ss_pred HHHHHHHHHHCCCEE--Eee-EEEEEEecC--CeEEEEecC--------CE-EEECEEEECCC--CCCCCCCCCCHHHc-
Confidence 999999999887653 444 566776644 567776542 35 78999999999 77888999998877
Q ss_pred cCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+..+++..+.+.....+++++|||+|.+|+|+|..|.+.+.+||+++|++
T Consensus 129 -----~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 129 -----KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred -----CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 777778777776666678999999999999999999999999999999985
No 9
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.91 E-value=4.5e-23 Score=189.20 Aligned_cols=176 Identities=19% Similarity=0.269 Sum_probs=140.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..+||+||||||+|++||..|++.|++|+++++. +||.|... + .+..++ . ..+....++.+
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~-~------------~~~~~~---~-~~~~~~~~l~~ 270 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDT-M------------GIENFI---S-VPETEGPKLAA 270 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeecc-C------------cccccC---C-CCCCCHHHHHH
Confidence 4589999999999999999999999999999864 78877521 0 001110 0 11356778999
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
++.+.++++++.. +++++|+++...+ +.|.|.+.++ .. +.||.||+||| ++|+.|++||.+.|
T Consensus 271 ~l~~~~~~~gv~i--~~~~~V~~I~~~~--~~~~V~~~~g-------~~-i~a~~vViAtG--~~~r~~~ipG~~~~--- 333 (517)
T PRK15317 271 ALEEHVKEYDVDI--MNLQRASKLEPAA--GLIEVELANG-------AV-LKAKTVILATG--ARWRNMNVPGEDEY--- 333 (517)
T ss_pred HHHHHHHHCCCEE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEcCEEEECCC--CCcCCCCCCCHHHh---
Confidence 9999999998776 8899999998754 6788887653 46 89999999999 67778899998777
Q ss_pred CCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccch
Q 022626 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPM 220 (294)
Q Consensus 166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~ 220 (294)
.+..+++....+.....+++|+|||+|++|+|+|..|+..+.+|++++|++.
T Consensus 334 ---~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 334 ---RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred ---cCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 6766666655554556789999999999999999999999999999999863
No 10
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-23 Score=162.81 Aligned_cols=250 Identities=18% Similarity=0.256 Sum_probs=172.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
..+|+|||+||++.+||.++++...+.++||-.- .+|. -++-.+........|+.+ |+-....++++.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~~i-----~pGGQLtTTT~veNfPGF------Pdgi~G~~l~d~ 75 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-ANGI-----APGGQLTTTTDVENFPGF------PDGITGPELMDK 75 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeee-ccCc-----CCCceeeeeeccccCCCC------CcccccHHHHHH
Confidence 3499999999999999999999999999999543 1111 111111111122222222 222367899999
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCc--ccccc
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL--CSFCS 164 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~--~~~~~ 164 (294)
+++.++++|.+ .+..+|.+++... ..+.+.++. +. +.+|.||+||| ...+...+||. ..|
T Consensus 76 mrkqs~r~Gt~---i~tEtVskv~~ss--kpF~l~td~--------~~-v~~~avI~atG--AsAkRl~~pg~ge~~f-- 137 (322)
T KOG0404|consen 76 MRKQSERFGTE---IITETVSKVDLSS--KPFKLWTDA--------RP-VTADAVILATG--ASAKRLHLPGEGEGEF-- 137 (322)
T ss_pred HHHHHHhhcce---eeeeehhhccccC--CCeEEEecC--------Cc-eeeeeEEEecc--cceeeeecCCCCcchH--
Confidence 99999999987 4556688887654 667777755 45 78999999999 55555566665 336
Q ss_pred CCCCCceEEeccCCCCCC--CCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchhhhhhHhhcc-CCHHHHHHHHH
Q 022626 165 SATGTGEVIHSTQYKNGK--PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVYLGVVLFKY-VPFGWVDTLMV 241 (294)
Q Consensus 165 ~~~~~g~~~~~~~~~~~~--~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~ 241 (294)
..+-+.++..++.. .+++|..+|||+|-+|+|-|..|...+.+|++++|++-++.+..|++. .....++.+.+
T Consensus 138 ----WqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~n 213 (322)
T KOG0404|consen 138 ----WQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYN 213 (322)
T ss_pred ----HhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhcCCCeEEEec
Confidence 66778888888854 488999999999999999999999999999999999977777665542 22333333444
Q ss_pred HHHHHHhcCcccc-CCC--C---------CCCCcchhcccCCCceE--EccchhhhhhcCeEEEee
Q 022626 242 MLSRLVYGDLSKY-GIP--K---------PREGPFFMKAAYGKYPV--IDAGTCEKIKSGQIQVIN 293 (294)
Q Consensus 242 ~~~~~~~~~~~~~-g~~--~---------~~~~~~~~~~~~g~~p~--~~~~~~~~i~~G~i~v~~ 293 (294)
...-..+|+.... ++. . |..|.|+ ..|+.|. +-++.++.-.+|+|+++|
T Consensus 214 t~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf---~IGH~Pat~~l~gqve~d~~GYi~t~p 276 (322)
T KOG0404|consen 214 TVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFF---AIGHSPATKFLKGQVELDEDGYIVTRP 276 (322)
T ss_pred hhhhhhccCcccccceEEEecccCcccccccceeEE---EecCCchhhHhcCceeeccCceEEecc
Confidence 4444455553222 111 1 2233332 4578884 446677777789999997
No 11
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.90 E-value=1.6e-22 Score=186.69 Aligned_cols=173 Identities=21% Similarity=0.388 Sum_probs=133.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.+||+||||||||++||..|++.|++|+|||++ .+||.+.... ....++. ....+..++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~----------~i~~~pg-------~~~~~~~~l~~~ 65 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS----------EVVNYPG-------ILNTTGPELMQE 65 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc----------ccccCCC-------CcCCCHHHHHHH
Confidence 589999999999999999999999999999996 4676543210 0000111 012356788899
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~ 166 (294)
+++.++++++.. .+++|+.++.+. ..+.|.+.+ .. +.+++||+||| +.|..|++||.+.+
T Consensus 66 l~~~~~~~gv~~---~~~~V~~i~~~~--~~~~V~~~~--------g~-~~a~~lVlATG--a~p~~~~ipG~~~~---- 125 (555)
T TIGR03143 66 MRQQAQDFGVKF---LQAEVLDVDFDG--DIKTIKTAR--------GD-YKTLAVLIATG--ASPRKLGFPGEEEF---- 125 (555)
T ss_pred HHHHHHHcCCEE---eccEEEEEEecC--CEEEEEecC--------CE-EEEeEEEECCC--CccCCCCCCCHHHh----
Confidence 999999888763 467888887643 456676644 35 78899999999 78888999998766
Q ss_pred CCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 167 ~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+..++++..++.....+++++|||+|++|+|+|..|.+.|.+|++++|++
T Consensus 126 --~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 126 --TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred --CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 666666655555455678999999999999999999999999999999986
No 12
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.90 E-value=4e-23 Score=178.82 Aligned_cols=215 Identities=27% Similarity=0.359 Sum_probs=132.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCC-CCeEEEecCCCCCCCcCCCC-CCcEEEecCC--ccccCCCCCCCCCC--------
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLAK--QFCQLPHLPFPSSY-------- 74 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g-~~v~iie~~~~~gg~w~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~-------- 74 (294)
.+|+++||.||++|++|..|.+.+ .++..||+++.+ .|+..+ .++..+..+- .+..+.+...+..+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 479999999999999999999986 899999998764 487653 2344333331 11111111111110
Q ss_pred ---------CCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCC--CcEEEEEeccCCCCceeEEEEeeCEEEE
Q 022626 75 ---------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT--NMWNVKASNLLSPGREIEEYYSGRFLVV 143 (294)
Q Consensus 75 ---------~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~d~vv~ 143 (294)
..+|++.++.+|+++.++++.... +++++|++|+..... ..|+|.+.+.++ ...+ +.++.||+
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v--~~~~~V~~I~~~~~~~~~~~~V~~~~~~g---~~~~-~~ar~vVl 153 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQV--RYGSEVTSIEPDDDGDEDLFRVTTRDSDG---DGET-YRARNVVL 153 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTE--EESEEEEEEEEEEETTEEEEEEEEEETTS----EEE-EEESEEEE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCce--EECCEEEEEEEecCCCccEEEEEEeecCC---CeeE-EEeCeEEE
Confidence 145899999999999999998545 999999999887643 258998864222 2367 89999999
Q ss_pred ccCCCCCCCCCCCCCccccccCCCCCceEEeccCCCCCC--CCCCCeEEEEccCCcHHHHHHHHhhccC--eEEEEEccc
Q 022626 144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK--PYGGKNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP 219 (294)
Q Consensus 144 AtG~~~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~v~VvG~G~~~~e~a~~l~~~~~--~v~~~~r~~ 219 (294)
|+| ..|.+|..-..... ...++|+.++.... ...+++|+|||+|.||.|++..|.+.+. +|+++.|++
T Consensus 154 a~G--~~P~iP~~~~~~~~------~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 154 ATG--GQPRIPEWFQDLPG------SPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ------EE---GGGGGGTT-------TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CcC--CCCCCCcchhhcCC------CCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 999 88888864221111 35789999886632 5567999999999999999999999875 899999999
Q ss_pred hh---hhhhHhhccCCHHHHH
Q 022626 220 MV---YLGVVLFKYVPFGWVD 237 (294)
Q Consensus 220 ~~---~~~~~~~~~~~~~~~~ 237 (294)
-+ +.++..++++..+.++
T Consensus 226 ~~~~~d~s~f~ne~f~P~~v~ 246 (341)
T PF13434_consen 226 GFFPMDDSPFVNEIFSPEYVD 246 (341)
T ss_dssp S-EB----CCHHGGGSHHHHH
T ss_pred ccCCCccccchhhhcCchhhh
Confidence 32 3333334444444444
No 13
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.90 E-value=8.9e-23 Score=181.25 Aligned_cols=263 Identities=17% Similarity=0.188 Sum_probs=163.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCcEEEecCCcc-ccCCCCC--CCCCCCC-CCCH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQF-CQLPHLP--FPSSYPM-FVSR 80 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~-~~~~ 80 (294)
..||++|||+||+|..||.++++.|.+|.++|+...+|| |.+..|.|+..+...... ..+.... +.-.... -.+.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 468999999999999999999999999999999976666 556677777654333222 1222111 1111111 2456
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCc-EEEEEEEcC-CCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022626 81 AQFIEHLDHYVSHFNIGPSIRYQR-SVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (294)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~~i~~~~-~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g 158 (294)
+++.++.++..+.........+.. .|+-+.-.. -.+..+|.+... +. ++ ++++++|+||| |+|..|+++|
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~-~~----~~-~~a~~iiIATG--S~p~~~~~~~ 154 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE-DK----ET-ITADNIIIATG--SRPRIPPGPG 154 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC-Cc----eE-EEeCEEEEcCC--CCCcCCCCCC
Confidence 666666665333321110001111 222221110 011234555432 11 57 89999999999 9999999988
Q ss_pred ccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchhhhhhHhhccCCHHHHHH
Q 022626 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVYLGVVLFKYVPFGWVDT 238 (294)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~ 238 (294)
.+.. .++.+.+..... ..|++++|||+|++|+|+|..++++|.+||+++|+ +++++.++.++.+.
T Consensus 155 ~~~~--------~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~------~~iLp~~D~ei~~~ 219 (454)
T COG1249 155 IDGA--------RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERG------DRILPGEDPEISKE 219 (454)
T ss_pred CCCC--------eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC------CCCCCcCCHHHHHH
Confidence 7743 456666644434 56899999999999999999999999999999999 56667777777777
Q ss_pred HHHHHHHHHh---cC-----cc--ccCCCC-CCCC---cc---hhcccCCCceEEccchhhhhh-----cCeEEE
Q 022626 239 LMVMLSRLVY---GD-----LS--KYGIPK-PREG---PF---FMKAAYGKYPVIDAGTCEKIK-----SGQIQV 291 (294)
Q Consensus 239 ~~~~~~~~~~---~~-----~~--~~g~~~-~~~~---~~---~~~~~~g~~p~~~~~~~~~i~-----~G~i~v 291 (294)
+...+.+.-. -+ .+ +-++.. -..+ .. .+..+.|+.|.++...++++- .|.|+|
T Consensus 220 ~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~V 294 (454)
T COG1249 220 LTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKV 294 (454)
T ss_pred HHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEe
Confidence 7766655200 00 00 000110 0111 12 233467999999987777632 377876
No 14
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.89 E-value=9.1e-22 Score=180.38 Aligned_cols=175 Identities=19% Similarity=0.294 Sum_probs=133.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..+||+||||||+|++||..|++.|++|+|++. .+||.+... . .+..+... .+....++.+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~-~---------~~~~~~~~-------~~~~~~~l~~ 271 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT-V---------GIENLISV-------PYTTGSQLAA 271 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC-c---------Cccccccc-------CCCCHHHHHH
Confidence 458999999999999999999999999999975 478776421 0 00001110 1235678888
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
++.+.+++++++. +.+++|+++..+. +.|.+++.++ .. +.||++|+||| +.|..|++||.+.+
T Consensus 272 ~l~~~l~~~gv~i--~~~~~V~~I~~~~--~~~~v~~~~g-------~~-i~~d~lIlAtG--a~~~~~~ipG~~~~--- 334 (515)
T TIGR03140 272 NLEEHIKQYPIDL--MENQRAKKIETED--GLIVVTLESG-------EV-LKAKSVIVATG--ARWRKLGVPGEKEY--- 334 (515)
T ss_pred HHHHHHHHhCCeE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCEEEECCC--CCcCCCCCCCHHHc---
Confidence 9999998888776 8889999997654 5677877653 46 89999999999 67778889997655
Q ss_pred CCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+..++.....+.....+++|+|||+|++|+|+|..|+..+.+||++++.+
T Consensus 335 ---~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 335 ---IGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred ---CCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 444444444444334568999999999999999999999999999998875
No 15
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.89 E-value=6.2e-22 Score=179.83 Aligned_cols=208 Identities=16% Similarity=0.195 Sum_probs=130.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCCcEEEecC-CccccCCCCCCCC--CCCCCCCHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLA-KQFCQLPHLPFPS--SYPMFVSRA 81 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~ 81 (294)
..+||+||||||+|++||..|++.|.+|++||+.+.+||+|. ..|.|+..+... ..+..+...+... ..+...+.+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 468999999999999999999999999999999888888764 445554322211 1111111000000 011223455
Q ss_pred HHHHHHHH-----------HHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 82 QFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 82 ~~~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
++.++.++ ..++.++.. +.+ ++..+ +...+.|...++ .... +.||+||+||| +.
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~----~~~~~~v~~~~g-----~~~~-~~~d~lviATG--s~ 148 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDL--IQG-RARFV----DPHTVEVECPDG-----EVET-LTADKIVIATG--SR 148 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEE--EEE-EEEEe----cCCEEEEEeCCC-----ceEE-EEcCEEEEcCC--CC
Confidence 55554433 333444443 333 23333 224556665443 1246 89999999999 88
Q ss_pred CCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchhhhhhHhhcc
Q 022626 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVYLGVVLFKY 230 (294)
Q Consensus 151 p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~ 230 (294)
|..|++++... ..++++.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|++ .+++.
T Consensus 149 p~~p~~~~~~~--------~~v~~~~~~~~-~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~------~~l~~ 213 (461)
T PRK05249 149 PYRPPDVDFDH--------PRIYDSDSILS-LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD------RLLSF 213 (461)
T ss_pred CCCCCCCCCCC--------CeEEcHHHhhc-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC------CcCCc
Confidence 88887766432 12444444333 22357999999999999999999999999999999984 33344
Q ss_pred CCHHHHHHHHHHH
Q 022626 231 VPFGWVDTLMVML 243 (294)
Q Consensus 231 ~~~~~~~~~~~~~ 243 (294)
++.+..+.+...+
T Consensus 214 ~d~~~~~~l~~~l 226 (461)
T PRK05249 214 LDDEISDALSYHL 226 (461)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555554444
No 16
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.89 E-value=2.4e-22 Score=181.38 Aligned_cols=199 Identities=17% Similarity=0.220 Sum_probs=123.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC-cCCCCCCcEEEecCCcc-c---cCCCCCCCCCCCCCCCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQF-C---QLPHLPFPSSYPMFVSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~-w~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 81 (294)
.+||+||||||+|++||..|++.|.+|+|+|+.. +||+ .+..|.|+..+..+... . ....+..+.......+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 5899999999999999999999999999999964 6775 45566666432221111 0 111111111111113444
Q ss_pred HHHHHHHHHHH-----------HcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 82 QFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 82 ~~~~~l~~~~~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
++.++.+++++ +.+++. +.++.+. . +..+|.+.. .. +.||+||+||| ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~~----~---~~~~v~v~~--------~~-~~~d~vIiAtG--s~ 140 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHARF----T---KDGTVEVNG--------RD-YTAPHILIATG--GK 140 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEEE----c---cCCEEEECC--------EE-EEeCEEEEecC--CC
Confidence 55544333333 334333 4443221 1 112354432 46 89999999999 88
Q ss_pred CCCC-CCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchhhhhhHhhc
Q 022626 151 PFTP-DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVYLGVVLFK 229 (294)
Q Consensus 151 p~~p-~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~ 229 (294)
|..| ++||.+.. ..+..+.. ....+++++|||+|++|+|+|..|++.|.+||+++|++ .+++
T Consensus 141 p~~p~~i~g~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~------~il~ 203 (450)
T TIGR01421 141 PSFPENIPGAELG----------TDSDGFFA-LEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE------RVLR 203 (450)
T ss_pred CCCCCCCCCCcee----------EcHHHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC------CCCc
Confidence 8888 88886421 22222222 11236899999999999999999999999999999983 3334
Q ss_pred cCCHHHHHHHHHHH
Q 022626 230 YVPFGWVDTLMVML 243 (294)
Q Consensus 230 ~~~~~~~~~~~~~~ 243 (294)
.++..+.+.+...+
T Consensus 204 ~~d~~~~~~~~~~l 217 (450)
T TIGR01421 204 SFDSMISETITEEY 217 (450)
T ss_pred ccCHHHHHHHHHHH
Confidence 45555555444443
No 17
>PRK14694 putative mercuric reductase; Provisional
Probab=99.89 E-value=1e-21 Score=178.40 Aligned_cols=192 Identities=15% Similarity=0.189 Sum_probs=126.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCcEEEecCCcc-ccCCCCCCCCCC---CCCCC
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQF-CQLPHLPFPSSY---PMFVS 79 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~ 79 (294)
...+||+||||||+|++||..|++.|.+|+|||+. .+||+|.. .|.|+..+...... ......++.... ..-.+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 35789999999999999999999999999999997 57887754 33333222111010 111111111111 11246
Q ss_pred HHHHHHHHHHHHHHcC-------C----CceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCC
Q 022626 80 RAQFIEHLDHYVSHFN-------I----GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (294)
Q Consensus 80 ~~~~~~~l~~~~~~~~-------l----~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~ 148 (294)
+.++.++.++.+..+. + ... ....+++.+ +...|.|++.+++ ..+ ++||+||+|||
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~~g~v~~i----d~~~~~V~~~~g~-----~~~-~~~d~lViATG-- 149 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILRENAAIT-VLNGEARFV----DERTLTVTLNDGG-----EQT-VHFDRAFIGTG-- 149 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcCCCeE-EEEEEEEEe----cCCEEEEEecCCC-----eEE-EECCEEEEeCC--
Confidence 6677766666544321 0 111 222244444 2356888887642 146 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 149 ~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
++|..|++||.+.. .++++.+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+..
T Consensus 150 s~p~~p~i~G~~~~--------~~~~~~~~~~-l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 150 ARPAEPPVPGLAET--------PYLTSTSALE-LDHIPERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CCCCCCCCCCCCCC--------ceEcchhhhc-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 89999999997643 2344433222 22347899999999999999999999999999998763
No 18
>PRK14727 putative mercuric reductase; Provisional
Probab=99.88 E-value=1.7e-21 Score=177.29 Aligned_cols=199 Identities=17% Similarity=0.189 Sum_probs=124.0
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCcEEEecCCcccc-CCCCC---CCCCCCC
Q 022626 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-LPHLP---FPSSYPM 76 (294)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~ 76 (294)
..+..++||+||||||+|+++|..|++.|.+|+++|+.+.+||+|.. .|.|+..+..+..... ....+ ++...+
T Consensus 11 ~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~- 89 (479)
T PRK14727 11 TRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAP- 89 (479)
T ss_pred ccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCC-
Confidence 34456799999999999999999999999999999998889998754 4556544322211111 11111 111111
Q ss_pred CCCHHHHHHHHHHHHHHcC---CCceeeeCcEEEEE----EEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 77 FVSRAQFIEHLDHYVSHFN---IGPSIRYQRSVESA----SYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~---l~~~i~~~~~V~~i----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
-.+...+..+.+....+.. ....+..+..|+-+ ... +...+.|...++ +..+ +.||+||+||| +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~-~~~~v~v~~~~g-----~~~~-~~~d~lViATG--s 160 (479)
T PRK14727 90 SIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFK-DGNTLVVRLHDG-----GERV-LAADRCLIATG--S 160 (479)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEe-cCCEEEEEeCCC-----ceEE-EEeCEEEEecC--C
Confidence 1244555544444333221 00000011112111 122 234566665443 1247 89999999999 8
Q ss_pred CCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 150 ~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+|..|++||.+.. .++++.+... ....+++++|||+|++|+|+|..+.+.|.+||+++|+.
T Consensus 161 ~p~~p~i~G~~~~--------~~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 161 TPTIPPIPGLMDT--------PYWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CCCCCCCCCcCcc--------ceecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 9999999997532 2233322222 12346899999999999999999999999999998863
No 19
>PRK06370 mercuric reductase; Validated
Probab=99.88 E-value=9.4e-22 Score=178.55 Aligned_cols=184 Identities=14% Similarity=0.180 Sum_probs=117.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC-cCCCCCCcEEEecCCccc-c---CCCCCCCCCCCCCCCH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFC-Q---LPHLPFPSSYPMFVSR 80 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~-w~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 80 (294)
..+||+||||||+|++||..|++.|++|+|||+.. +||+ .+..|.|+..+..+.... . ...+.++.......+.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 35899999999999999999999999999999975 5554 444555543221111000 0 0011111000012355
Q ss_pred HHHHHHHHHHHHH-----------c-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCC
Q 022626 81 AQFIEHLDHYVSH-----------F-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (294)
Q Consensus 81 ~~~~~~l~~~~~~-----------~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~ 148 (294)
+.+.++.++.+++ . +++. +.++.+ .+ +..+|.++. .+ +.||+||+|||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v--~~g~~~-~~------~~~~v~v~~--------~~-~~~d~lViATG-- 142 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLRGLEGVDV--FRGHAR-FE------SPNTVRVGG--------ET-LRAKRIFINTG-- 142 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCCcEE--EEEEEE-Ec------cCCEEEECc--------EE-EEeCEEEEcCC--
Confidence 5556555443332 2 3322 333322 11 123354432 46 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 149 ~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
++|..|++||.+.. .++++.+..+. ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+
T Consensus 143 s~p~~p~i~G~~~~--------~~~~~~~~~~~-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 143 ARAAIPPIPGLDEV--------GYLTNETIFSL-DELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred CCCCCCCCCCCCcC--------ceEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 89999999997642 24444444332 2347999999999999999999999999999999985
No 20
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.88 E-value=1.8e-21 Score=176.65 Aligned_cols=205 Identities=16% Similarity=0.103 Sum_probs=124.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC-cCCCCCCcEEEec-CCccc---cCCCCCCCCCCCCCCCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHL-AKQFC---QLPHLPFPSSYPMFVSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~-w~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~ 81 (294)
++||+||||||+|++||..|++.|.+|+|+|+.+.+||+ ++..|+|+..+.. ...+. ....+-.... ....+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 82 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDID 82 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCHH
Confidence 689999999999999999999999999999998778884 4556776643221 11111 0101000000 1123455
Q ss_pred HHHHHHHHHHHH-----------cCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 82 QFIEHLDHYVSH-----------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 82 ~~~~~l~~~~~~-----------~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
.+.++.+...++ .++.. ..+ ++..+ +.....|...++ +..+ +.||+||+||| ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~--~~g-~a~~~----~~~~v~v~~~~g-----~~~~-~~~d~lViATG--s~ 147 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTV--VNG-LGKFT----GGNTLEVTGEDG-----KTTV-IEFDNAIIAAG--SR 147 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEc----cCCEEEEecCCC-----ceEE-EEcCEEEEeCC--CC
Confidence 665555444332 34432 322 23222 123344443332 1256 89999999999 77
Q ss_pred CCC-CCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchhhhhhHhhc
Q 022626 151 PFT-PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVYLGVVLFK 229 (294)
Q Consensus 151 p~~-p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~ 229 (294)
|.. |.+++... .++.+.+.... ...+++++|||+|.+|+|+|..|.+.|.+||++++.+ .+++
T Consensus 148 p~~~p~~~~~~~---------~v~~~~~~~~~-~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~------~il~ 211 (471)
T PRK06467 148 PIQLPFIPHDDP---------RIWDSTDALEL-KEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD------QVIP 211 (471)
T ss_pred CCCCCCCCCCCC---------cEEChHHhhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC------CCCC
Confidence 763 44554321 23444333332 2246899999999999999999999999999999984 3333
Q ss_pred cCCHHHHHHHHHHH
Q 022626 230 YVPFGWVDTLMVML 243 (294)
Q Consensus 230 ~~~~~~~~~~~~~~ 243 (294)
.++....+.+...+
T Consensus 212 ~~d~~~~~~~~~~l 225 (471)
T PRK06467 212 AADKDIVKVFTKRI 225 (471)
T ss_pred cCCHHHHHHHHHHH
Confidence 44455444444443
No 21
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.87 E-value=4.5e-21 Score=173.18 Aligned_cols=181 Identities=19% Similarity=0.238 Sum_probs=116.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC-CCCCCcC-CCCCCcEEEecCCccccCCCCCCCCCCCC-CCCHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWK-KYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQF 83 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~-~~gg~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (294)
.+||+||||||+|++||..|+++|.+|+|||+.+ .+||+|. ..|.++..+..+.. . ..++.. ....+++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~------~--~~~~~~~~~~~~~~ 74 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ------Q--HTDFVRAIQRKNEV 74 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc------c--CCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999986 4788764 34433321110000 0 000000 0011222
Q ss_pred HHHHHH-----HHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022626 84 IEHLDH-----YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (294)
Q Consensus 84 ~~~l~~-----~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g 158 (294)
..+++. ..+..++.. . ..+++.+ +.+.+.|...++ ..+ +.||+||+||| ++|..|++||
T Consensus 75 ~~~~~~~~~~~~~~~~gv~~--~-~g~~~~i----~~~~~~v~~~~g------~~~-~~~d~lviATG--s~p~~p~i~G 138 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNIDV--I-DGQAEFI----NNHSLRVHRPEG------NLE-IHGEKIFINTG--AQTVVPPIPG 138 (441)
T ss_pred HHHHHHhHHHHHhhcCCcEE--E-EEEEEEe----cCCEEEEEeCCC------eEE-EEeCEEEEcCC--CcCCCCCCCC
Confidence 233321 111113321 2 2234443 234566665442 136 89999999999 8899999999
Q ss_pred ccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+.+ .+ ++++..... ....+++++|||+|.+|+|+|..|.+.|.+||+++|++
T Consensus 139 ~~~~------~~-v~~~~~~~~-~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 139 ITTT------PG-VYDSTGLLN-LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred ccCC------CC-EEChhHhhc-ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 8654 44 444443333 22357899999999999999999999999999999984
No 22
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.87 E-value=4.9e-21 Score=173.96 Aligned_cols=186 Identities=19% Similarity=0.243 Sum_probs=118.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC-cCCCCCCcEEEecCCcccc----CCCCCCCCCCCCCCCH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR 80 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~-w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (294)
..+||+||||||+|++||..|++.|++|+|+|++. +||+ ++..|.|+..+........ ...+.+... ....+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 46899999999999999999999999999999987 7775 4666666543322211111 111111100 113466
Q ss_pred HHHHHHHHHHHH-----------HcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 81 AQFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 81 ~~~~~~l~~~~~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
.++.+|.++.++ +.+++. +.+ +++.+ +...+.|...++ . .+ +.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~~----~~~~~~v~~~~~-----~-~~-~~~d~lViAtG--s 144 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDI--IRG-EAKLV----DPNTVRVMTEDG-----E-QT-YTAKNIILATG--S 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEc----cCCEEEEecCCC-----c-EE-EEeCEEEEeCC--C
Confidence 677777555433 334332 332 23333 123344443221 1 56 89999999999 7
Q ss_pred CCCCCCCCCccccccCCCCCce-EEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 150 NPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 150 ~p~~p~i~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+|..| ||.+. .+. ++++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|.+
T Consensus 145 ~p~~~--pg~~~-------~~~~v~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 145 RPREL--PGIEI-------DGRVIWTSDEALN-LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred CCCCC--CCCCC-------CCCeEEcchHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 77543 45542 333 334333332 22346899999999999999999999999999999984
No 23
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.87 E-value=9e-21 Score=171.05 Aligned_cols=175 Identities=17% Similarity=0.148 Sum_probs=114.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC-CCCC-cCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASI-WKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~-~gg~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (294)
.+||+||||||+|++||..|++.|++|+|||+++. +||+ .+..|.|+..+...... ..+..++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--------------~~~~~~~~ 68 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK--------------NLSFEQVM 68 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc--------------CCCHHHHH
Confidence 58999999999999999999999999999999874 5775 34444443322111110 01223333
Q ss_pred HHHH-----------HHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 85 EHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 85 ~~l~-----------~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
.+.+ +...+.++.. +.++ +..+ +..+|.+..++. ..+ +.||+||+||| ++|..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~gV~~--~~g~-~~~~------~~~~v~v~~~~~----~~~-~~~d~vViATG--s~~~~ 132 (438)
T PRK07251 69 ATKNTVTSRLRGKNYAMLAGSGVDL--YDAE-AHFV------SNKVIEVQAGDE----KIE-LTAETIVINTG--AVSNV 132 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-EEEc------cCCEEEEeeCCC----cEE-EEcCEEEEeCC--CCCCC
Confidence 3322 2223333332 2222 2111 122344433211 146 89999999999 88888
Q ss_pred CCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 154 p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
|++||.+.. . .++++.+.... ...+++++|||+|.+|+|+|..+++.|.+|++++|++
T Consensus 133 p~i~G~~~~------~-~v~~~~~~~~~-~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 133 LPIPGLADS------K-HVYDSTGIQSL-ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred CCCCCcCCC------C-cEEchHHHhcc-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 999997543 2 23444443332 2347899999999999999999999999999999985
No 24
>PLN02507 glutathione reductase
Probab=99.87 E-value=4.5e-21 Score=174.86 Aligned_cols=205 Identities=15% Similarity=0.130 Sum_probs=127.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEec---------CCCCCCCc-CCCCCCcEEEecCCccc----cCCCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER---------ENCYASIW-KKYSYDRLRLHLAKQFC----QLPHLPFPS 72 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~---------~~~~gg~w-~~~~~~~~~~~~~~~~~----~~~~~~~~~ 72 (294)
.|||+||||||+|+.||..+++.|.+|+|||+ ...+||+| +..|+|+..+..+.... ....+-...
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 47999999999999999999999999999996 35678865 55677765542221110 001110100
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-----------cCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEE
Q 022626 73 SYPMFVSRAQFIEHLDHYVSH-----------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (294)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~-----------~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~v 141 (294)
....-.+...+.+++...+++ .+++ ....++..+ +...+.|...++ ++.+ +.||+|
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~i~g~a~~v----d~~~v~V~~~~g-----~~~~-~~~d~L 171 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK---LYEGEGKIV----GPNEVEVTQLDG-----TKLR-YTAKHI 171 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEEEEEEe----cCCEEEEEeCCC-----cEEE-EEcCEE
Confidence 000123455555544333332 2332 122233333 234566766543 2246 899999
Q ss_pred EEccCCCCCCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchh
Q 022626 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMV 221 (294)
Q Consensus 142 v~AtG~~~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~ 221 (294)
|+||| ++|..|.+||.+.. .++.+..... ..+++++|||+|.+|+|+|..+.+.|.+|++++|.+
T Consensus 172 IIATG--s~p~~p~ipG~~~~----------~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-- 236 (499)
T PLN02507 172 LIATG--SRAQRPNIPGKELA----------ITSDEALSLE-ELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-- 236 (499)
T ss_pred EEecC--CCCCCCCCCCccce----------echHHhhhhh-hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC--
Confidence 99999 88888999886421 2222222211 236899999999999999999999999999999984
Q ss_pred hhhhHhhccCCHHHHHHHHHHH
Q 022626 222 YLGVVLFKYVPFGWVDTLMVML 243 (294)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~ 243 (294)
.+++.++.+..+.+...+
T Consensus 237 ----~~l~~~d~~~~~~l~~~l 254 (499)
T PLN02507 237 ----LPLRGFDDEMRAVVARNL 254 (499)
T ss_pred ----CcCcccCHHHHHHHHHHH
Confidence 223334555544444333
No 25
>PRK06116 glutathione reductase; Validated
Probab=99.86 E-value=7.5e-21 Score=172.14 Aligned_cols=180 Identities=22% Similarity=0.255 Sum_probs=116.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCcEEEecCCccc----c-CCCCCCCCCCCCCCCH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFC----Q-LPHLPFPSSYPMFVSR 80 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~ 80 (294)
.+||+||||||+|++||..|++.|++|+|||+. .+||+| +..|.|+..+....... . ...+.+... ....+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT-ENKFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC-CCCcCH
Confidence 589999999999999999999999999999996 577754 44566554322111110 0 000000000 011233
Q ss_pred HHHHHHHHH-----------HHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 81 AQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 81 ~~~~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
..+.++.++ ..++.+++. ..+ +++.++ ..+|++ ++ .+ +.||+||+||| +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~v~------~~~v~~-~g-------~~-~~~d~lViATG--s 141 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDL--IEG-FARFVD------AHTVEV-NG-------ER-YTADHILIATG--G 141 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc------CCEEEE-CC-------EE-EEeCEEEEecC--C
Confidence 444443332 233344443 333 344331 234555 32 56 89999999999 8
Q ss_pred CCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 150 ~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+|..|++||.+. .+++.+.... ...+++++|||+|.+|+|+|..|.+.|.+|++++|++
T Consensus 142 ~p~~p~i~g~~~----------~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 142 RPSIPDIPGAEY----------GITSDGFFAL-EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CCCCCCCCCcce----------eEchhHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 899999988653 2333333321 2246899999999999999999999999999999985
No 26
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.86 E-value=4.2e-21 Score=174.38 Aligned_cols=191 Identities=17% Similarity=0.202 Sum_probs=117.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-CCCCcEEEecCC-ccc---cCCCCCCCCCCCCCCCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAK-QFC---QLPHLPFPSSYPMFVSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~ 81 (294)
.+||+||||||+|++||..|++.|.+|+|||+ ..+||+|.. .|.|+..+.... .+. .+..+..... ....+..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence 58999999999999999999999999999999 678887753 444432211110 000 1111111111 1345778
Q ss_pred HHHHHHHHHHHHcCCCc-eeeeC-cEEEEEEEcC-CCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022626 82 QFIEHLDHYVSHFNIGP-SIRYQ-RSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (294)
Q Consensus 82 ~~~~~l~~~~~~~~l~~-~i~~~-~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g 158 (294)
++.+++++.++.+.... ...+. ..|+-+.... ..+.+.+.+. + .+ +.||+||+||| +. .|.+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~-~-------~~-~~~d~lIiATG--s~--~p~ipg 147 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVN-G-------ER-IEAKNIVIATG--SR--VPPIPG 147 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEEC-c-------EE-EEeCEEEEeCC--CC--CCCCCC
Confidence 88888877776542111 00000 0111111000 0012344442 1 56 89999999999 55 456666
Q ss_pred ccccccCCCCCc-eEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 159 LCSFCSSATGTG-EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 159 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+.. .+ .++++.+... ....+++++|||+|.+|+|+|..|.+.|.+|++++|++
T Consensus 148 ~~~~------~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 148 VWLI------LGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred Cccc------CCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 5432 22 2333333222 23357999999999999999999999999999999985
No 27
>PRK13748 putative mercuric reductase; Provisional
Probab=99.86 E-value=1.3e-20 Score=175.16 Aligned_cols=190 Identities=17% Similarity=0.159 Sum_probs=122.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCCcEEEecCCccc-cCCCCCCCCCC---CCCCCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC-QLPHLPFPSSY---PMFVSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~ 81 (294)
.+||+||||||+|++||..|++.|.+|+|||++ .+||+|. ..|.|+..+..+.... .....++...+ ......+
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 589999999999999999999999999999998 6888774 3556654332221110 11111110011 1123566
Q ss_pred HHHHHHHHHHHHcCC-----------CceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 82 QFIEHLDHYVSHFNI-----------GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 82 ~~~~~l~~~~~~~~l-----------~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
.+.++.++...++.. ... .+..+++.+ +...+.|...++. ..+ ++||+||+||| ++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~~~~~----~~~~~~v~~~~g~-----~~~-~~~d~lviAtG--s~ 243 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAIT-VLHGEARFK----DDQTLIVRLNDGG-----ERV-VAFDRCLIATG--AS 243 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeE-EEEEEEEEe----cCCEEEEEeCCCc-----eEE-EEcCEEEEcCC--CC
Confidence 666665554433210 011 112223322 2345566654431 146 89999999999 88
Q ss_pred CCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 151 p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
|..|++||.+.. .++++.+... ....+++++|||+|.+|+|+|..|.+.|.+|++++|+.
T Consensus 244 p~~p~i~g~~~~--------~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 244 PAVPPIPGLKET--------PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CCCCCCCCCCcc--------ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 999999997642 2233332221 22346899999999999999999999999999999874
No 28
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.86 E-value=3.3e-21 Score=175.10 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=117.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCCcEEEecCCccccC-CCCCCCCC-CCCCCCHHHHH
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQL-PHLPFPSS-YPMFVSRAQFI 84 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 84 (294)
+||+||||||+|++||..|++.|.+|+|||++. +||+|. ..|.|+..+......... ....+... .....+...+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 689999999999999999999999999999987 677654 455554432221111111 00001000 01122344444
Q ss_pred HHHHHH------------HHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022626 85 EHLDHY------------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 85 ~~l~~~------------~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~ 152 (294)
.+.++. .++.+++. ..+ ++..+ +..+|.+.++ ... +.+|+||+||| ++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~~------~~~~v~v~~g------~~~-~~~~~lIiATG--s~p~ 141 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDY--LRG-RARFK------DPKTVKVDLG------REV-RGAKRFLIATG--ARPA 141 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEE--EEE-EEEEc------cCCEEEEcCC------eEE-EEeCEEEEcCC--CCCC
Confidence 333332 33334332 222 22221 1234655432 145 78999999999 8899
Q ss_pred CCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 153 ~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.|++||.+.. .++++.+..... ..+++++|||+|.+|+|+|..|.+.|.+||+++|++
T Consensus 142 ~p~i~G~~~~--------~~~~~~~~~~~~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 142 IPPIPGLKEA--------GYLTSEEALALD-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CCCCCCcccC--------ceECchhhhCcc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 9999997653 244444433322 236899999999999999999999999999999984
No 29
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.86 E-value=5.9e-21 Score=172.40 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=116.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCcEEEecCCcc----ccCCCCCCCCCCCCCCCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQF----CQLPHLPFPSSYPMFVSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 81 (294)
+|||+||||||+|++||..+++.|++|+|+|++ .+||++ +..|.|+..+..+... .....+..... ..-.+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence 589999999999999999999999999999996 577754 4566666533221111 11111111000 0012332
Q ss_pred H-----------HHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 82 Q-----------FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 82 ~-----------~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
. +.++++...++.+++. .. .++..++. ....+. .++ .. +.||+||+||| ++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~~-g~~~~v~~----~~v~v~-~~g-------~~-~~~d~lIiATG--s~ 141 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVEL--LE-GRARLVGP----NTVEVL-QDG-------TT-YTAKKILIAVG--GR 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEE--EE-EEEEEecC----CEEEEe-cCC-------eE-EEcCEEEEecC--Cc
Confidence 2 3334444445555543 33 34554432 223332 121 56 89999999999 88
Q ss_pred CCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 151 p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
|..|++||.+.. +.+.+... ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+
T Consensus 142 p~~p~i~G~~~~----------~~~~~~~~-l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 142 PQKPNLPGHELG----------ITSNEAFH-LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred CCCCCCCCccce----------echHHhhc-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 998999986521 22222222 11247899999999999999999999999999999884
No 30
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=3.5e-21 Score=159.37 Aligned_cols=215 Identities=17% Similarity=0.183 Sum_probs=144.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCcEEEecCCcc----ccCCCCCCCCCCCCCCC
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQF----CQLPHLPFPSSYPMFVS 79 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 79 (294)
...+|+.|||||-.|+++|+..++.|.++.++|..-.+||++ +..|-|...+.....+ ....++-|+.+-..-.+
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 356899999999999999999999999999999987777754 4556665544332221 11222233332222335
Q ss_pred HHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEc---CCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022626 80 RAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (294)
Q Consensus 80 ~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~ 155 (294)
+..+.+-..+|+.++ ++-.+..-+..|.-++-. ..++...|...++ .... |+++++++||| ++|.+|+
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~-----~~~~-Ytak~iLIAtG--g~p~~Pn 169 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDG-----TKIV-YTAKHILIATG--GRPIIPN 169 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCC-----eeEE-EecceEEEEeC--CccCCCC
Confidence 666666555566554 222111223334333211 1234445555554 2256 89999999999 9999999
Q ss_pred CCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchhhhhhHhhccCCHHH
Q 022626 156 IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVYLGVVLFKYVPFGW 235 (294)
Q Consensus 156 i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~ 235 (294)
|||.+. -+.|..+.+.+ ..+++++|||+|++|+|+|..++.+|.+++++.|. ..+++-|+..+
T Consensus 170 IpG~E~----------gidSDgff~Le-e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~------~kvLR~FD~~i 232 (478)
T KOG0405|consen 170 IPGAEL----------GIDSDGFFDLE-EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQ------EKVLRGFDEMI 232 (478)
T ss_pred CCchhh----------ccccccccchh-hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEec------chhhcchhHHH
Confidence 999763 25666666633 35899999999999999999999999999999999 55566666666
Q ss_pred HHHHHHHHH
Q 022626 236 VDTLMVMLS 244 (294)
Q Consensus 236 ~~~~~~~~~ 244 (294)
.+.....+.
T Consensus 233 ~~~v~~~~~ 241 (478)
T KOG0405|consen 233 SDLVTEHLE 241 (478)
T ss_pred HHHHHHHhh
Confidence 665555443
No 31
>PTZ00058 glutathione reductase; Provisional
Probab=99.85 E-value=3.4e-20 Score=170.08 Aligned_cols=208 Identities=18% Similarity=0.244 Sum_probs=124.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCcEEEecCCcccc-C---CCCCCCCCCCCCCCH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ-L---PHLPFPSSYPMFVSR 80 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~ 80 (294)
.++||+||||||+|++||..+++.|.+|+|||++. +|| |.+..|.|+..+........ . ..+-... ..-.+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~--~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDT--QFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCc--cCccCH
Confidence 46899999999999999999999999999999974 666 55667777665443322211 0 0111100 011234
Q ss_pred HHHHHHHHHH-----------HHHcCCCceeeeCcE-EEE---EE--------E--c-CCCCcEEEEEe---ccCCCCce
Q 022626 81 AQFIEHLDHY-----------VSHFNIGPSIRYQRS-VES---AS--------Y--D-EATNMWNVKAS---NLLSPGRE 131 (294)
Q Consensus 81 ~~~~~~l~~~-----------~~~~~l~~~i~~~~~-V~~---i~--------~--~-~~~~~~~v~~~---~~~~~~~~ 131 (294)
..+.++.+++ .++.+++. ..+.- +.+ +. . + .+++..+|+.. ..+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g--- 198 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEY--FEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG--- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEE--EEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC---
Confidence 4444444333 23333332 22221 111 00 0 0 00112222110 00011
Q ss_pred eEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCe
Q 022626 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (294)
Q Consensus 132 ~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~ 211 (294)
.. ++||+||+||| ++|..|++||.+. ++.+.++..... +++++|||+|.+|+|+|..+.+.|.+
T Consensus 199 -~~-i~ad~lVIATG--S~P~~P~IpG~~~----------v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~ 262 (561)
T PTZ00058 199 -QV-IEGKNILIAVG--NKPIFPDVKGKEF----------TISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAE 262 (561)
T ss_pred -cE-EECCEEEEecC--CCCCCCCCCCcee----------EEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCc
Confidence 46 89999999999 8999999998641 234444433222 79999999999999999999999999
Q ss_pred EEEEEccchhhhhhHhhccCCHHHHHHHHHHH
Q 022626 212 TSLVVRSPMVYLGVVLFKYVPFGWVDTLMVML 243 (294)
Q Consensus 212 v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (294)
||++++++ .+++.++....+.+...+
T Consensus 263 Vtli~~~~------~il~~~d~~i~~~l~~~L 288 (561)
T PTZ00058 263 SYIFARGN------RLLRKFDETIINELENDM 288 (561)
T ss_pred EEEEEecc------cccccCCHHHHHHHHHHH
Confidence 99999983 334445555554444433
No 32
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.85 E-value=5.3e-21 Score=174.49 Aligned_cols=191 Identities=16% Similarity=0.220 Sum_probs=121.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC--------CCCCC-cCCCCCCcEEEecCCcccc-C----CCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASI-WKKYSYDRLRLHLAKQFCQ-L----PHLPFPS 72 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~--------~~gg~-w~~~~~~~~~~~~~~~~~~-~----~~~~~~~ 72 (294)
.+||+||||||+|++||..|++.|.+|+|+|+.. .+||+ .+..|+|+..+..+..... + ..+.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~- 83 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK- 83 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC-
Confidence 5899999999999999999999999999999732 37775 4556777543322111100 0 011111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCceeeeCc---EEEEEEEcC-CCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCC
Q 022626 73 SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQR---SVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (294)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~---~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~ 148 (294)
.+.-.+..++.+++++.+++++... .... .|+-+.... ..+.++|.+.+.+. ... ++||+||+|||
T Consensus 84 -~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~----~~~-i~~d~lIIATG-- 153 (499)
T PTZ00052 84 -TSSSFNWGKLVTTVQNHIRSLNFSY--RTGLRSSKVEYINGLAKLKDEHTVSYGDNSQ----EET-ITAKYILIATG-- 153 (499)
T ss_pred -CCCCcCHHHHHHHHHHHHHHhhHHH--HHHhhhcCcEEEEEEEEEccCCEEEEeeCCC----ceE-EECCEEEEecC--
Confidence 0113567888888888777654322 2211 122221000 01234455433211 156 89999999999
Q ss_pred CCCCCCC-CCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEcc
Q 022626 149 TNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (294)
Q Consensus 149 ~~p~~p~-i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~ 218 (294)
+.|..|. +||.+.+ .+.+.+... ....+++++|||+|.+|+|+|..|++.|.+||+++++
T Consensus 154 s~p~~p~~i~G~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 154 GRPSIPEDVPGAKEY---------SITSDDIFS-LSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CCCCCCCCCCCccce---------eecHHHHhh-hhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 8888874 8886532 222333222 1224679999999999999999999999999999876
No 33
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.85 E-value=3.2e-20 Score=168.89 Aligned_cols=190 Identities=19% Similarity=0.170 Sum_probs=116.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCCcEEEecCCcc-ccCC---CCCCCCCCCCCCCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQF-CQLP---HLPFPSSYPMFVSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~ 81 (294)
.+||+||||||+|++||..|++.|.+|+|+|+. .+||+|. ..|.|+..+...... .... .+-.... ....+..
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 81 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVS-GPALDFA 81 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCC-CCccCHH
Confidence 689999999999999999999999999999997 6788764 445555432211111 1000 0000000 0112333
Q ss_pred HHHHHHHH-----------HHHHcCCCceeeeCcEEEEEEEc---CCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCC
Q 022626 82 QFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (294)
Q Consensus 82 ~~~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~ 147 (294)
.+.++.++ ..++.+++. .. .+++.++.. +..+.+.|.+.++. ..+ +.||+||+|||
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~--~~-g~a~~i~~~~~~~~~~~~~v~~~~g~-----~~~-~~~d~lViATG- 151 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDV--FH-GIGRILGPSIFSPMPGTVSVETETGE-----NEM-IIPENLLIATG- 151 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEeCCCCCcCCceEEEEEeCCCc-----eEE-EEcCEEEEeCC-
Confidence 44443322 223334442 33 345555332 11235666654431 156 89999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCce-EEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 148 TTNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 148 ~~~p~~p~i~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
++|..+ |+.. + .+. ++++.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|.+
T Consensus 152 -s~p~~~--p~~~-~------~~~~~~~~~~~~~-~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 152 -SRPVEL--PGLP-F------DGEYVISSDEALS-LETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred -CCCCCC--CCCC-C------CCceEEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 777543 3332 1 222 444444333 22246899999999999999999999999999999984
No 34
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.85 E-value=1.3e-20 Score=181.72 Aligned_cols=161 Identities=20% Similarity=0.267 Sum_probs=118.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..++|+|||||||||+||..|++.|++|+|||+.+.+||..++. .|.|....++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG------------------------IP~~rlp~~vi~ 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG------------------------IPEFRLPNQLID 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc------------------------CCCCcChHHHHH
Confidence 46899999999999999999999999999999999999986532 123333456667
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
...+.++..|+.. +.++.+- ..+++++. .. ..||+|++|||+ ..|+.+++||.+.
T Consensus 361 ~~i~~l~~~Gv~f--~~n~~vG----------~dit~~~l-------~~-~~yDAV~LAtGA-~~pr~l~IpG~dl---- 415 (944)
T PRK12779 361 DVVEKIKLLGGRF--VKNFVVG----------KTATLEDL-------KA-AGFWKIFVGTGA-GLPTFMNVPGEHL---- 415 (944)
T ss_pred HHHHHHHhhcCeE--EEeEEec----------cEEeHHHh-------cc-ccCCEEEEeCCC-CCCCcCCCCCCcC----
Confidence 6677777788766 6666441 12445442 33 578999999995 3688888998652
Q ss_pred CCCCceEEeccCCC---------------CCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 166 ATGTGEVIHSTQYK---------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 166 ~~~~g~~~~~~~~~---------------~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.| +....++. ......+++|+|||+|++|+|+|..+.+.|++||+++|++
T Consensus 416 ---~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 416 ---LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred ---cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 23 12211111 0112357999999999999999999999999999999884
No 35
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.85 E-value=7.3e-20 Score=166.06 Aligned_cols=188 Identities=18% Similarity=0.180 Sum_probs=114.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCcEEEecCCccc-cCCCC---CCCCCCCCCCCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFC-QLPHL---PFPSSYPMFVSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~ 81 (294)
.+||+||||||+|++||..+++.|.+|+|+|++..+||++ +..|.|+..+......+ ..... .+.-....-.+..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 4899999999999999999999999999999877788854 55566665432221111 11100 0000001112344
Q ss_pred HHHHHHHHHHH-----------HcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 82 QFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 82 ~~~~~l~~~~~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
++.++.+..+. ..++.. ..+. . .+ . +.....|...++ .+.+ ++||+||+||| ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-a-~~--~-~~~~v~v~~~~g-----~~~~-~~~d~lVIATG--s~ 147 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDW--IKGW-G-RL--D-GVGKVVVKAEDG-----SETQ-LEAKDIVIATG--SE 147 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-E-EE--c-cCCEEEEEcCCC-----ceEE-EEeCEEEEeCC--CC
Confidence 44444433322 122221 2111 1 11 1 123344444332 2246 89999999999 66
Q ss_pred CCCCCCCCccccccCCCCCc-eEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 151 PFTPDIRGLCSFCSSATGTG-EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 151 p~~p~i~g~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
|. .+||.+. .+ .++++.+.... ...+++++|||+|.+|+|+|..+.+.|.+||++++.+
T Consensus 148 p~--~ipg~~~-------~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 148 PT--PLPGVTI-------DNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CC--CCCCCCC-------CCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 64 4566542 23 24444433332 2347999999999999999999999999999999884
No 36
>PRK12831 putative oxidoreductase; Provisional
Probab=99.85 E-value=7.4e-21 Score=171.91 Aligned_cols=163 Identities=23% Similarity=0.299 Sum_probs=116.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..++|+||||||+|++||..|++.|++|+|||+.+.+||.+.+. ++.+.+ +.+++..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~l--------~~~~~~~ 195 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------------IPEFRL--------PKETVVK 195 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------------CCCccC--------CccHHHH
Confidence 45899999999999999999999999999999999899876432 111111 1234666
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
+..++++++++.. ++++.+.. .+..++.. .. +.||+||+|||+ +.|..+++||.+.
T Consensus 196 ~~~~~~~~~gv~i--~~~~~v~~----------~v~~~~~~------~~-~~~d~viiAtGa-~~~~~l~ipG~~~---- 251 (464)
T PRK12831 196 KEIENIKKLGVKI--ETNVVVGK----------TVTIDELL------EE-EGFDAVFIGSGA-GLPKFMGIPGENL---- 251 (464)
T ss_pred HHHHHHHHcCCEE--EcCCEECC----------cCCHHHHH------hc-cCCCEEEEeCCC-CCCCCCCCCCcCC----
Confidence 6667777788765 77775511 12222210 23 579999999994 2577888998753
Q ss_pred CCCCceEEeccCC----------C---CCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 166 ATGTGEVIHSTQY----------K---NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 166 ~~~~g~~~~~~~~----------~---~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.| ++...++ . +.....+++|+|||+|++|+|+|..+.+.|.+||+++|++
T Consensus 252 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 252 ---NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred ---cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 22 2222111 1 1123467999999999999999999999999999999875
No 37
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.84 E-value=5.9e-20 Score=166.93 Aligned_cols=205 Identities=18% Similarity=0.190 Sum_probs=125.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC--------CCCCC-cCCCCCCcEEEecCCcccc----CCCCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASI-WKKYSYDRLRLHLAKQFCQ----LPHLPFPSS 73 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~--------~~gg~-w~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 73 (294)
++||+|||+||+|+.+|..+++.|.+|+++|+.. .+||+ .+..|.|+..+........ ...+-+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5799999999999999999999999999999731 46775 4557788765433221111 011101000
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-----------CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEE
Q 022626 74 YPMFVSRAQFIEHLDHYVSHF-----------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (294)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~-----------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv 142 (294)
.....+...+.++.++.+.+. +++. +.....-+ +.....|...+++ ..+ +.||+||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~---i~G~a~f~----~~~~v~v~~~~g~-----~~~-~~~d~lV 148 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNY---ENAYAEFV----DKHRIKATNKKGK-----EKI-YSAERFL 148 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEE---EEEEEEEc----CCCEEEEeccCCC-----ceE-EEeCEEE
Confidence 001235556666555544433 2221 11111111 1223333322221 156 8999999
Q ss_pred EccCCCCCCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchhh
Q 022626 143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVY 222 (294)
Q Consensus 143 ~AtG~~~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~ 222 (294)
+||| ++|..|++||.+.. .+.+.+... ....+++++|||+|.+|+|+|..|++.|.+||++.|..
T Consensus 149 IATG--s~p~~p~ipG~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~--- 213 (484)
T TIGR01438 149 IATG--ERPRYPGIPGAKEL---------CITSDDLFS-LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI--- 213 (484)
T ss_pred EecC--CCCCCCCCCCccce---------eecHHHhhc-ccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc---
Confidence 9999 89999999987432 233333322 12346789999999999999999999999999998752
Q ss_pred hhhHhhccCCHHHHHHHHHHH
Q 022626 223 LGVVLFKYVPFGWVDTLMVML 243 (294)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ 243 (294)
+++.++..+.+.+...+
T Consensus 214 ----~l~~~d~~~~~~l~~~L 230 (484)
T TIGR01438 214 ----LLRGFDQDCANKVGEHM 230 (484)
T ss_pred ----cccccCHHHHHHHHHHH
Confidence 23444555555444433
No 38
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.84 E-value=1.1e-19 Score=165.25 Aligned_cols=191 Identities=13% Similarity=0.116 Sum_probs=113.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccc-cC----CCCCCCCCCCCCCCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFC-QL----PHLPFPSSYPMFVSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~ 81 (294)
.+||+||||||+|++||..|++.|.+|+|||++...|.+.+..|.|+..+....... .+ ..+-... ....+..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~--~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG--EVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc--CcccCHH
Confidence 589999999999999999999999999999997543444455566543222111100 00 0000000 1123455
Q ss_pred HHHHHHHHHHHHc--CCCceeeeC-cEEEEEEEc---CCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022626 82 QFIEHLDHYVSHF--NIGPSIRYQ-RSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (294)
Q Consensus 82 ~~~~~l~~~~~~~--~l~~~i~~~-~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~ 155 (294)
.+..+.++..++. ++.. .+. ..|+.+... .+...+.|...++ +..+ +.||+||+||| +.|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~g~~~~~~~~~v~v~~~~g-----~~~~-~~~d~lViATG--s~p~~~- 150 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHF--LMKKNKITEIHGYGTFTDANTLEVDLNDG-----GTET-VTFDNAIIATG--SSTRLL- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHhCCCEEEEEEEEEcCCCEEEEEecCC-----CeeE-EEcCEEEEeCC--CCCCCC-
Confidence 5555554443322 1111 111 123333211 1223444444332 1256 89999999999 777653
Q ss_pred CCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 156 IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 156 i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
||.+. .+.++.+.+... ....+++++|||+|.+|+|+|..|++.|.+|+++++++
T Consensus 151 -pg~~~-------~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 151 -PGTSL-------SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred -CCCCC-------CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 55431 223444333222 12347899999999999999999999999999999884
No 39
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.84 E-value=7.2e-20 Score=165.89 Aligned_cols=185 Identities=15% Similarity=0.222 Sum_probs=117.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCcccc-C---C--CCCCCCCCCCCCCHHH
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ-L---P--HLPFPSSYPMFVSRAQ 82 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~ 82 (294)
+|+||||||+|++||..|++.|.+|+|||+++..|.+.+..|.|+..+........ . . ..+.+.. ....+.+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNG-SISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCC-CCccCHHH
Confidence 89999999999999999999999999999987555566667777654422111100 0 0 1111100 11235566
Q ss_pred HHHHHHHHHHHc-----------CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCC
Q 022626 83 FIEHLDHYVSHF-----------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (294)
Q Consensus 83 ~~~~l~~~~~~~-----------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p 151 (294)
+.++.++..++. +++ .+..++..+ +.....|..+++ ..+ ++||+||+||| ++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~----~~~~v~v~~~~~------~~~-~~~d~lviATG--s~p 144 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFE----TDHRVRVEYGDK------EEV-VDAEQFIIAAG--SEP 144 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEc----cCCEEEEeeCCC------cEE-EECCEEEEeCC--CCC
Confidence 666655544432 221 112222222 223444444221 146 89999999999 778
Q ss_pred CCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 152 FTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 152 ~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
..|++++.+. ..++++.+... ....+++++|||+|.+|+|+|..+.+.|.+|++++|++
T Consensus 145 ~~~p~~~~~~--------~~v~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 145 TELPFAPFDG--------KWIINSKHAMS-LPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CCCCCCCCCC--------CeEEcchHHhC-ccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 7777766432 12444433332 22346899999999999999999999999999999984
No 40
>PLN02546 glutathione reductase
Probab=99.84 E-value=4.4e-20 Score=169.42 Aligned_cols=199 Identities=15% Similarity=0.178 Sum_probs=122.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecC---------CCCCC-CcCCCCCCcEEEecCCcccc-C---CCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE---------NCYAS-IWKKYSYDRLRLHLAKQFCQ-L---PHLPFPS 72 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~---------~~~gg-~w~~~~~~~~~~~~~~~~~~-~---~~~~~~~ 72 (294)
.|||+|||+||+|+.||..+++.|.+|+|+|+. ..+|| |.+..|.|+..+........ + ..+-+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 489999999999999999999999999999962 34566 44556666654432211111 1 1111100
Q ss_pred CCCCCCCHHHHHHHHHH-----------HHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEE
Q 022626 73 SYPMFVSRAQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (294)
Q Consensus 73 ~~~~~~~~~~~~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~v 141 (294)
....-.++..+.++.++ ..++.+++. +. .+++.++ . ..|.++ + +. +.||+|
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~--i~-G~a~~vd----~--~~V~v~-G-------~~-~~~D~L 220 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTL--IE-GRGKIVD----P--HTVDVD-G-------KL-YTARNI 220 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--EE-eEEEEcc----C--CEEEEC-C-------EE-EECCEE
Confidence 00111344444444333 333333332 22 2233332 1 235443 2 56 899999
Q ss_pred EEccCCCCCCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchh
Q 022626 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMV 221 (294)
Q Consensus 142 v~AtG~~~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~ 221 (294)
|+||| ++|..|++||.+.. +++.+... ....+++++|||+|.+|+|+|..|.+.+.+|++++|.+
T Consensus 221 VIATG--s~p~~P~IpG~~~v----------~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-- 285 (558)
T PLN02546 221 LIAVG--GRPFIPDIPGIEHA----------IDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-- 285 (558)
T ss_pred EEeCC--CCCCCCCCCChhhc----------cCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc--
Confidence 99999 89999999986532 22222222 22357899999999999999999999999999999884
Q ss_pred hhhhHhhccCCHHHHHHHHHH
Q 022626 222 YLGVVLFKYVPFGWVDTLMVM 242 (294)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~ 242 (294)
.+++.++....+.+...
T Consensus 286 ----~il~~~d~~~~~~l~~~ 302 (558)
T PLN02546 286 ----KVLRGFDEEVRDFVAEQ 302 (558)
T ss_pred ----ccccccCHHHHHHHHHH
Confidence 33334555544444433
No 41
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.83 E-value=4.2e-20 Score=166.70 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=112.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+. ++ .+....++..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip---------~~~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IP---------EFRLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CC---------CccCCHHHHH
Confidence 45799999999999999999999999999999999888875422 11 1111234555
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
...+.+++.++.. +.++.+ .+.+.+++ .. ..||+||+|||+ +.|..|++||.+.
T Consensus 188 ~~~~~l~~~gv~~--~~~~~v----------~~~v~~~~--------~~-~~yd~viiAtGa-~~p~~~~ipG~~~---- 241 (449)
T TIGR01316 188 TEIKTLKKLGVTF--RMNFLV----------GKTATLEE--------LF-SQYDAVFIGTGA-GLPKLMNIPGEEL---- 241 (449)
T ss_pred HHHHHHHhCCcEE--EeCCcc----------CCcCCHHH--------HH-hhCCEEEEeCCC-CCCCcCCCCCCCC----
Confidence 5555566666655 666543 11233332 12 468999999994 3688888888752
Q ss_pred CCCCceEEeccCCC--------------CCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 166 ~~~~g~~~~~~~~~--------------~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.| +++..++. ......+++|+|||+|++|+|+|..+.+.|.+||+++|++
T Consensus 242 ---~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 242 ---CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred ---CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 22 22222111 1112357999999999999999999999999999999985
No 42
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.83 E-value=1.6e-19 Score=164.10 Aligned_cols=184 Identities=16% Similarity=0.180 Sum_probs=114.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcC-CCCCCcEEEecCCccc----cCCCCCCCCCCCCCCCHHH
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRAQ 82 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 82 (294)
+||+||||||+|++||..|++.|.+|+|||+ +.+||+|. ..|+|+..+....... ....+..... ....+...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHHH
Confidence 7999999999999999999999999999999 77888654 4455553322111110 0111111000 11234444
Q ss_pred HHHHHHHHHH-----------HcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCC
Q 022626 83 FIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (294)
Q Consensus 83 ~~~~l~~~~~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p 151 (294)
+.++.+...+ +.+++. ..+ ++..+ +...+.+...++ ..+ +.||+||+||| ++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~----~~~~~~v~~~~g------~~~-~~~d~lVlAtG--~~p 143 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTV--IKG-EAKFL----DPGTVLVTGENG------EET-LTAKNIIIATG--SRP 143 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEc----cCCEEEEecCCC------cEE-EEeCEEEEcCC--CCC
Confidence 4444333322 233332 222 22222 224455554332 146 89999999999 788
Q ss_pred CCCCCC-CccccccCCCCCce-EEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 152 FTPDIR-GLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 152 ~~p~i~-g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
..|++| +. .+. +.++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|++
T Consensus 144 ~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 144 RSLPGPFDF---------DGEVVITSTGALN-LKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CCCCCCCCC---------CCceEEcchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 777765 32 222 333332222 22346899999999999999999999999999999985
No 43
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.83 E-value=2.1e-19 Score=162.55 Aligned_cols=171 Identities=17% Similarity=0.297 Sum_probs=115.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
++|+|||||++|+++|..|++.+ .+|+|||+++..+ |... .++... + ..+....++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------------~~~~~~-~---~~~~~~~~~~~ 60 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------------GLPYFV-G---GFFDDPNTMIA 60 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------------CCceEe-c---cccCCHHHhhc
Confidence 37999999999999999999875 5899999998643 1100 000000 0 01122234444
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEe--eCEEEEccCCCCCCCCCCCCCccccc
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS--GRFLVVASGETTNPFTPDIRGLCSFC 163 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~vv~AtG~~~~p~~p~i~g~~~~~ 163 (294)
+..+.+++.+++. +++++|++++.++ . .|++.+..++ .+ +. ||+||+||| ++|..|++||.+.
T Consensus 61 ~~~~~~~~~gv~~--~~~~~V~~id~~~--~--~v~~~~~~~~----~~-~~~~yd~lviAtG--~~~~~~~i~g~~~-- 125 (444)
T PRK09564 61 RTPEEFIKSGIDV--KTEHEVVKVDAKN--K--TITVKNLKTG----SI-FNDTYDKLMIATG--ARPIIPPIKNINL-- 125 (444)
T ss_pred CCHHHHHHCCCeE--EecCEEEEEECCC--C--EEEEEECCCC----CE-EEecCCEEEECCC--CCCCCCCCCCcCC--
Confidence 4445556667665 7889999997654 3 3444431111 23 45 999999999 8888888988752
Q ss_pred cCCCCCceEEeccCCCCC-------CCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 164 SSATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
. .+.+...+.+. ....+++++|||+|.+|+|+|..+.+.|.+|+++++++
T Consensus 126 -----~-~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 126 -----E-NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred -----C-CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 1 23333332221 12347899999999999999999999999999998884
No 44
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.83 E-value=2.2e-19 Score=162.90 Aligned_cols=219 Identities=14% Similarity=0.114 Sum_probs=127.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC-CCCeEEEecC--------CCCCCC-cCCCCCCcEEEecCCccc-cCC---CCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERE--------NCYASI-WKKYSYDRLRLHLAKQFC-QLP---HLPFP 71 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~-g~~v~iie~~--------~~~gg~-w~~~~~~~~~~~~~~~~~-~~~---~~~~~ 71 (294)
..+||+|||+||+|..||..+++. |.+|+|||++ ..+||+ .+..|.|+..+..+.... ... .+-..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 468999999999999999999996 9999999984 457774 555677765443222111 111 11000
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHcC--CCceeeeCcEEEEEEEcC-CCCcEEEEEeccCC-CCceeEEEEeeCEEEEccC
Q 022626 72 -SSYPMFVSRAQFIEHLDHYVSHFN--IGPSIRYQRSVESASYDE-ATNMWNVKASNLLS-PGREIEEYYSGRFLVVASG 146 (294)
Q Consensus 72 -~~~~~~~~~~~~~~~l~~~~~~~~--l~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~d~vv~AtG 146 (294)
.....-.+...+.++.++..++.. ....+.-...|+-+.-.. -.+..+|.+....+ ++...++ +.||+||+|||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~-~~~d~lIIATG 160 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKER-LQAEHILLATG 160 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceE-EECCEEEEecC
Confidence 000112355666666665444321 000000001122221100 01223344432100 0001257 89999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhc---cCeEEEEEccchhhh
Q 022626 147 ETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLVVRSPMVYL 223 (294)
Q Consensus 147 ~~~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~---~~~v~~~~r~~~~~~ 223 (294)
++|..|++||.+.. +.+.+... ....+++++|||+|++|+|+|..+..+ |.+||++++.+
T Consensus 161 --s~p~~p~i~G~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~---- 223 (486)
T TIGR01423 161 --SWPQMLGIPGIEHC----------ISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN---- 223 (486)
T ss_pred --CCCCCCCCCChhhe----------echhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC----
Confidence 88999999986532 22222222 112478999999999999999877665 89999999883
Q ss_pred hhHhhccCCHHHHHHHHHHHH
Q 022626 224 GVVLFKYVPFGWVDTLMVMLS 244 (294)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~ 244 (294)
.+++.++.++.+.+...+.
T Consensus 224 --~il~~~d~~~~~~l~~~L~ 242 (486)
T TIGR01423 224 --MILRGFDSTLRKELTKQLR 242 (486)
T ss_pred --ccccccCHHHHHHHHHHHH
Confidence 3344556666555555443
No 45
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.82 E-value=6.2e-19 Score=160.44 Aligned_cols=190 Identities=15% Similarity=0.195 Sum_probs=114.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEec------CCCCCCCcCC-CCCCcEEEec-CCccccCC----CCCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER------ENCYASIWKK-YSYDRLRLHL-AKQFCQLP----HLPFPSSY 74 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~------~~~~gg~w~~-~~~~~~~~~~-~~~~~~~~----~~~~~~~~ 74 (294)
.+||+||||||+|++||..+++.|.+|+|+|+ ...+||+|.. .|.|+..+.. ...+..+. .+-....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~- 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD- 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC-
Confidence 58999999999999999999999999999998 3567776643 3444322111 11111110 0000000
Q ss_pred CCCCCHHHHHHHHHHH-----------HHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEE
Q 022626 75 PMFVSRAQFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (294)
Q Consensus 75 ~~~~~~~~~~~~l~~~-----------~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~ 143 (294)
..-.+...+.++.++. .+..+++. ...++..++... ..++|.+...+. .+ ++||+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~~~~~~~~~--~~~~v~v~~~~~-----~~-~~~d~lVi 151 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITV---LKGRGSFVGKTD--AGYEIKVTGEDE-----TV-ITAKHVII 151 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE---EEEEEEEecCCC--CCCEEEEecCCC-----eE-EEeCEEEE
Confidence 0012344444443332 22334332 233344444322 457777653211 46 89999999
Q ss_pred ccCCCCCCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 144 AtG~~~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
||| +.|..+ |+.. + .+..++.++........+++++|||+|.+|+|+|..+.+.|.+||+++|++
T Consensus 152 ATG--s~p~~~--p~~~-~------~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 152 ATG--SEPRHL--PGVP-F------DNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred eCC--CCCCCC--CCCC-C------CCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 999 776533 2222 1 233233322211122357999999999999999999999999999999985
No 46
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.82 E-value=2.8e-19 Score=161.13 Aligned_cols=187 Identities=17% Similarity=0.183 Sum_probs=117.2
Q ss_pred CeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
++|+|||||++|+.||..|++. +.+|+|||+++..+ |... ..+.... ......+++..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-------~~~~--~lp~~~~-----------~~~~~~~~~~~ 61 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-------FANC--ALPYYIG-----------EVVEDRKYALA 61 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-------cccC--Ccchhhc-----------CccCCHHHccc
Confidence 4899999999999999999987 67999999998643 1100 0000000 00111222222
Q ss_pred HH-HHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022626 86 HL-DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (294)
Q Consensus 86 ~l-~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~ 164 (294)
+. ..+.++.++.. +.+++|++++.+. . .|.+.++.++ .... +.||+||+||| ++|..|++++...
T Consensus 62 ~~~~~~~~~~~i~v--~~~~~V~~Id~~~--~--~v~~~~~~~~--~~~~-~~yd~lviAtG--s~~~~~~~~~~~~--- 127 (438)
T PRK13512 62 YTPEKFYDRKQITV--KTYHEVIAINDER--Q--TVTVLNRKTN--EQFE-ESYDKLILSPG--ASANSLGFESDIT--- 127 (438)
T ss_pred CCHHHHHHhCCCEE--EeCCEEEEEECCC--C--EEEEEECCCC--cEEe-eecCEEEECCC--CCCCCCCCCCCCe---
Confidence 22 23345556655 7889999997654 3 4555443211 1245 68999999999 8887776543221
Q ss_pred CCCCCceEEeccCCCCC-------CCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchhhhhhHhhccCCHHHHH
Q 022626 165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVYLGVVLFKYVPFGWVD 237 (294)
Q Consensus 165 ~~~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~ 237 (294)
+......+. ....+++++|||+|.+|+|+|..|.+.|.+||++++++ .+.+.++.+..+
T Consensus 128 --------~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~------~l~~~~d~~~~~ 193 (438)
T PRK13512 128 --------FTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD------KINKLMDADMNQ 193 (438)
T ss_pred --------EEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc------ccchhcCHHHHH
Confidence 111111111 12246899999999999999999999999999999984 333344455444
Q ss_pred HHHHH
Q 022626 238 TLMVM 242 (294)
Q Consensus 238 ~~~~~ 242 (294)
.+...
T Consensus 194 ~l~~~ 198 (438)
T PRK13512 194 PILDE 198 (438)
T ss_pred HHHHH
Confidence 44433
No 47
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.82 E-value=7.4e-19 Score=159.49 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=115.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCcEEEecCC-ccc---cCCCCCCCCC--CCCCCCH
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAK-QFC---QLPHLPFPSS--YPMFVSR 80 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~-~~~---~~~~~~~~~~--~~~~~~~ 80 (294)
++|+|||+|++|+.+|..+++.|.+|+++|++. +||++ +..|.|+..+.... ... ....+-.... -....+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 489999999999999999999999999999986 67654 44555554322110 000 0000000000 0001234
Q ss_pred HHHHHHHHHH-----------HHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 81 AQFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 81 ~~~~~~l~~~-----------~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
+.+.++.++. ++..+++. +. .+++.++...+.....|...++ ...+ +.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~~-g~~~~~~~~~~~~~v~V~~~~g-----~~~~-~~~d~lViATG--s 149 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRV--IA-GRGRLIDPGLGPHRVKVTTADG-----GEET-LDADVVLIATG--A 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEE--EE-EEEEEeecccCCCEEEEEeCCC-----ceEE-EecCEEEEcCC--C
Confidence 4444444333 33344443 33 3344432111224455555443 1146 89999999999 7
Q ss_pred CCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 150 ~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.|..|+.++.. ...++++.+..+.. ..+++++|||+|.+|+|+|..|++.|.+||++++.+
T Consensus 150 ~p~~~p~~~~~--------~~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~ 210 (466)
T PRK07845 150 SPRILPTAEPD--------GERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD 210 (466)
T ss_pred CCCCCCCCCCC--------CceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 77766544332 11344555444322 246899999999999999999999999999999884
No 48
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.81 E-value=2.4e-19 Score=161.14 Aligned_cols=162 Identities=19% Similarity=0.170 Sum_probs=111.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHh--CCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSL--QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~--~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (294)
.+++|+||||||||++||..|++ .|++|+|||+.+.+||.+++..- |.++....+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k~v 81 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETKNV 81 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhHHH
Confidence 45799999999999999999987 69999999999999988764310 233344556
Q ss_pred HHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022626 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (294)
Q Consensus 84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~ 163 (294)
...+.++.++.++.. +.+..+. ..+..++ -. ..||.||+|||.. .+..+++||.+.
T Consensus 82 ~~~~~~~~~~~~v~~--~~nv~vg----------~dvtl~~--------L~-~~yDaVIlAtGa~-~~~~l~IpG~d~-- 137 (491)
T PLN02852 82 TNQFSRVATDDRVSF--FGNVTLG----------RDVSLSE--------LR-DLYHVVVLAYGAE-SDRRLGIPGEDL-- 137 (491)
T ss_pred HHHHHHHHHHCCeEE--EcCEEEC----------ccccHHH--------Hh-hhCCEEEEecCCC-CCCCCCCCCCCC--
Confidence 666666666655543 5554441 1133333 12 4689999999942 235667888652
Q ss_pred cCCCCCceEEeccCC----------CC--CCCCCCCeEEEEccCCcHHHHHHHHhhc--------------------c-C
Q 022626 164 SSATGTGEVIHSTQY----------KN--GKPYGGKNVLVVGSGNSGMEIALDLANH--------------------A-A 210 (294)
Q Consensus 164 ~~~~~~g~~~~~~~~----------~~--~~~~~~~~v~VvG~G~~~~e~a~~l~~~--------------------~-~ 210 (294)
.| ++...++ .. .....+++|+|||+|++|+|+|..|.+. + .
T Consensus 138 -----~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~ 211 (491)
T PLN02852 138 -----PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVR 211 (491)
T ss_pred -----CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCC
Confidence 22 2222221 00 0123579999999999999999998764 4 5
Q ss_pred eEEEEEccch
Q 022626 211 KTSLVVRSPM 220 (294)
Q Consensus 211 ~v~~~~r~~~ 220 (294)
+|+++.|++.
T Consensus 212 ~V~iv~RRg~ 221 (491)
T PLN02852 212 KVYLVGRRGP 221 (491)
T ss_pred EEEEEEcCCh
Confidence 7999999983
No 49
>PRK07846 mycothione reductase; Reviewed
Probab=99.81 E-value=2.4e-19 Score=161.85 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=118.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccc-cCCC---CCCCCCCCCCCCHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFC-QLPH---LPFPSSYPMFVSRAQ 82 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~ 82 (294)
++||+|||+||+|.+||.. ..|.+|+++|++...|.|.+..|.|+..+..+.... .... +-.... ..-.+..+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~ 77 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWPD 77 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHHH
Confidence 3799999999999998876 469999999997644445566677765433221111 1110 101000 11246777
Q ss_pred HHHHHHHHHHHcCCC-ceee-eC-cEEEEEEEcC-CCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022626 83 FIEHLDHYVSHFNIG-PSIR-YQ-RSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (294)
Q Consensus 83 ~~~~l~~~~~~~~l~-~~i~-~~-~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g 158 (294)
+.++.+...++..-. .... +. ..|+-+.... ..+..+|.+.++ ++ +.||+||+||| ++|..|++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g-------~~-~~~d~lViATG--s~p~~p~i~g 147 (451)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDG-------EE-ITADQVVIAAG--SRPVIPPVIA 147 (451)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCC-------CE-EEeCEEEEcCC--CCCCCCCCCC
Confidence 888776666654111 0001 10 1121111000 012345666543 46 89999999999 8999999988
Q ss_pred ccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+.. .+..+.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|++
T Consensus 148 ~~~~--------~~~~~~~~~~-l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 148 DSGV--------RYHTSDTIMR-LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred cCCc--------cEEchHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 5432 1223333222 22347899999999999999999999999999999984
No 50
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.81 E-value=4.2e-19 Score=157.23 Aligned_cols=164 Identities=20% Similarity=0.325 Sum_probs=114.5
Q ss_pred CeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
++|+|||||+||+.+|..|++. ..+|+|+++++... |.... .+. .+......+++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~--l~~------------~~~~~~~~~~~~~ 61 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPD--LSH------------VFSQGQRADDLTR 61 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCc--CcH------------HHhCCCCHHHhhc
Confidence 5899999999999999999886 45899999987421 21110 000 0111123334443
Q ss_pred -HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022626 86 -HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (294)
Q Consensus 86 -~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~ 164 (294)
...++++++++.. +++++|++++.+. +.|.+++ .. +.||+||+||| +.|..|++||.+.
T Consensus 62 ~~~~~~~~~~gv~~--~~~~~V~~id~~~----~~v~~~~--------~~-~~yd~LVlATG--~~~~~p~i~G~~~--- 121 (377)
T PRK04965 62 QSAGEFAEQFNLRL--FPHTWVTDIDAEA----QVVKSQG--------NQ-WQYDKLVLATG--ASAFVPPIPGREL--- 121 (377)
T ss_pred CCHHHHHHhCCCEE--ECCCEEEEEECCC----CEEEECC--------eE-EeCCEEEECCC--CCCCCCCCCCCce---
Confidence 2456667777665 8889999987543 4566532 56 89999999999 8888889988642
Q ss_pred CCCCCceEEeccCCCC-----CCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 165 ~~~~~g~~~~~~~~~~-----~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
++......+ .....+++++|||+|.+|+|+|..|.+.+.+|+++++.+
T Consensus 122 -------v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 122 -------MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred -------EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 222221111 111246899999999999999999999999999999985
No 51
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.81 E-value=3.9e-19 Score=158.30 Aligned_cols=168 Identities=18% Similarity=0.234 Sum_probs=108.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (294)
.++|+|||||++|++||..|++.+. +|+++++++... |... ..++.+..-. ..+ ..+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~--~l~~~~~~~~---~~~--~~~~~----- 63 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERP--PLSKSMLLED---SPQ--LQQVL----- 63 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCC--CCCHHHHCCC---Ccc--ccccC-----
Confidence 4689999999999999999999876 799999987533 2111 1111110000 000 00000
Q ss_pred HHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022626 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (294)
Q Consensus 85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~ 164 (294)
-.++..+.+++. +.++.|..++.+. ..|.+.++ .+ +.||+||+||| +.|..+++++...
T Consensus 64 --~~~~~~~~~i~~--~~g~~V~~id~~~----~~v~~~~g-------~~-~~yd~LViATG--s~~~~~p~~~~~~--- 122 (396)
T PRK09754 64 --PANWWQENNVHL--HSGVTIKTLGRDT----RELVLTNG-------ES-WHWDQLFIATG--AAARPLPLLDALG--- 122 (396)
T ss_pred --CHHHHHHCCCEE--EcCCEEEEEECCC----CEEEECCC-------CE-EEcCEEEEccC--CCCCCCCCCCcCC---
Confidence 012233456555 7888898886543 45666553 46 89999999999 7776666554321
Q ss_pred CCCCCceEEeccCCCCC-----CCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 165 SATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 165 ~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
. .++......+. ....+++++|||+|.+|+|+|..|.+.|.+||++++.+
T Consensus 123 ----~-~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 123 ----E-RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred ----C-CEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 1 12222111111 11246899999999999999999999999999999884
No 52
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.81 E-value=2.6e-19 Score=166.38 Aligned_cols=212 Identities=15% Similarity=0.154 Sum_probs=126.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecC-CCCCCC-cCCCCCCcEEEecCCccc-cCC------CC-----CCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCYASI-WKKYSYDRLRLHLAKQFC-QLP------HL-----PFP 71 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~-~~~gg~-w~~~~~~~~~~~~~~~~~-~~~------~~-----~~~ 71 (294)
..|||+|||+|++|..||..+++.|.+|+|||+. ..+||+ .+..|.|+..+......+ .+. .+ .++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~ 194 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFK 194 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecccc
Confidence 3689999999999999999999999999999975 357774 455666665432221110 000 00 000
Q ss_pred --------CC----CCCCCCHHHHHHHHHHHHHHcC--CCce-----eeeCcEEEEEEEcC--CCCcEEEEEeccCCCCc
Q 022626 72 --------SS----YPMFVSRAQFIEHLDHYVSHFN--IGPS-----IRYQRSVESASYDE--ATNMWNVKASNLLSPGR 130 (294)
Q Consensus 72 --------~~----~~~~~~~~~~~~~l~~~~~~~~--l~~~-----i~~~~~V~~i~~~~--~~~~~~v~~~~~~~~~~ 130 (294)
.. ...-.+...+.++.+...++.. +... +....+...+.... -.+..+|.... .+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~--~g-- 270 (659)
T PTZ00153 195 NGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEK--SG-- 270 (659)
T ss_pred ccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEcc--CC--
Confidence 00 0112467788888777666542 1110 00111112221111 00112233321 11
Q ss_pred eeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccC
Q 022626 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA 210 (294)
Q Consensus 131 ~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~ 210 (294)
++ +.||+||+||| ++|..|++++.+.. .++.+.+... ....+++++|||+|.+|+|+|..+.+.|.
T Consensus 271 --~~-i~ad~lIIATG--S~P~~P~~~~~~~~--------~V~ts~d~~~-l~~lpk~VvIVGgG~iGvE~A~~l~~~G~ 336 (659)
T PTZ00153 271 --KE-FKVKNIIIATG--STPNIPDNIEVDQK--------SVFTSDTAVK-LEGLQNYMGIVGMGIIGLEFMDIYTALGS 336 (659)
T ss_pred --EE-EECCEEEEcCC--CCCCCCCCCCCCCC--------cEEehHHhhh-hhhcCCceEEECCCHHHHHHHHHHHhCCC
Confidence 56 89999999999 88888876554321 3444443332 22247899999999999999999999999
Q ss_pred eEEEEEccchhhhhhHhhccCCHHHHHHHHH
Q 022626 211 KTSLVVRSPMVYLGVVLFKYVPFGWVDTLMV 241 (294)
Q Consensus 211 ~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 241 (294)
+||++++.+ .+++.++.+..+.+..
T Consensus 337 eVTLIe~~~------~ll~~~d~eis~~l~~ 361 (659)
T PTZ00153 337 EVVSFEYSP------QLLPLLDADVAKYFER 361 (659)
T ss_pred eEEEEeccC------cccccCCHHHHHHHHH
Confidence 999999984 3334445554444433
No 53
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.80 E-value=2.5e-19 Score=171.25 Aligned_cols=161 Identities=24% Similarity=0.313 Sum_probs=113.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..++|+||||||||++||..|++.|++|+|||+.+.+||.+.+. ++.+.+ ..++.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~rl---------p~~~~~ 485 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG---------------IPEFRL---------PKKIVD 485 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCCCC---------CHHHHH
Confidence 45799999999999999999999999999999998888876532 111111 123455
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
...+.+++++++. +.++.+. ..+++++. .. ..||+||+|||+ +.|..+++||.+.
T Consensus 486 ~~~~~l~~~gv~~--~~~~~v~----------~~v~~~~l-------~~-~~ydavvlAtGa-~~~~~l~ipG~~~---- 540 (752)
T PRK12778 486 VEIENLKKLGVKF--ETDVIVG----------KTITIEEL-------EE-EGFKGIFIASGA-GLPNFMNIPGENS---- 540 (752)
T ss_pred HHHHHHHHCCCEE--ECCCEEC----------CcCCHHHH-------hh-cCCCEEEEeCCC-CCCCCCCCCCCCC----
Confidence 5555666677665 6666441 11333332 34 568999999995 2578888888653
Q ss_pred CCCCceEEeccCCC-------------CCCCCCCCeEEEEccCCcHHHHHHHHhhccCe-EEEEEccc
Q 022626 166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP 219 (294)
Q Consensus 166 ~~~~g~~~~~~~~~-------------~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~-v~~~~r~~ 219 (294)
.| +++..++. ......+++|+|||+|++|+|+|..+.+.|.+ ||+++|++
T Consensus 541 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 541 ---NG-VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred ---CC-cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 22 22222111 11223579999999999999999999999987 99999874
No 54
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.6e-19 Score=146.07 Aligned_cols=182 Identities=18% Similarity=0.262 Sum_probs=139.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
.+|||+|||+||+|.+||.+.++.|++.-++- ..+||..... +. +..|-.. .+....++..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT----~~------IENfIsv-------~~teGpkl~~ 270 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDT----MG------IENFISV-------PETEGPKLAA 270 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccc----cc------hhheecc-------ccccchHHHH
Confidence 47999999999999999999999999875542 2355542211 00 0001111 2245678889
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcC-CCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~ 164 (294)
.+.+..+++.+.. ....+.+.+++.. ..+...|++.++ -. +.++.+|+||| .+.+-.++||.++|
T Consensus 271 ale~Hv~~Y~vDi--mn~qra~~l~~a~~~~~l~ev~l~nG-------av-LkaktvIlstG--ArWRn~nvPGE~e~-- 336 (520)
T COG3634 271 ALEAHVKQYDVDV--MNLQRASKLEPAAVEGGLIEVELANG-------AV-LKARTVILATG--ARWRNMNVPGEDEY-- 336 (520)
T ss_pred HHHHHHhhcCchh--hhhhhhhcceecCCCCccEEEEecCC-------ce-eccceEEEecC--cchhcCCCCchHHH--
Confidence 9999999998776 5555666776643 234678888886 56 89999999999 55555689999999
Q ss_pred CCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchhhhh
Q 022626 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVYLG 224 (294)
Q Consensus 165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~~~ 224 (294)
+.+-+.++..|+...+++|+|+|||+|+||+|.|.+|+....+||++...+-+..-
T Consensus 337 ----rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD 392 (520)
T COG3634 337 ----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKAD 392 (520)
T ss_pred ----hhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhH
Confidence 88888899999999999999999999999999999999999999999888644333
No 55
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.80 E-value=1e-18 Score=167.20 Aligned_cols=167 Identities=20% Similarity=0.228 Sum_probs=118.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhC----CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~----g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (294)
+++|+|||+|++|+.+|..|.+. +++|+||++++.++ |....+ +..+ .. ...++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L--~~~~------------~~-~~~~~ 60 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHL--SSYF------------SH-HTAEE 60 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcc--hHhH------------cC-CCHHH
Confidence 35899999999999999999764 47999999998753 332211 1110 00 12233
Q ss_pred HHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccc
Q 022626 83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF 162 (294)
Q Consensus 83 ~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~ 162 (294)
+......+.++.+++. +.++.|+.++.+. ..|.+.++ .+ +.||+||+||| ++|..|++||.+..
T Consensus 61 l~~~~~~~~~~~gI~~--~~g~~V~~Id~~~----~~V~~~~G-------~~-i~yD~LVIATG--s~p~~p~ipG~~~~ 124 (847)
T PRK14989 61 LSLVREGFYEKHGIKV--LVGERAITINRQE----KVIHSSAG-------RT-VFYDKLIMATG--SYPWIPPIKGSETQ 124 (847)
T ss_pred ccCCCHHHHHhCCCEE--EcCCEEEEEeCCC----cEEEECCC-------cE-EECCEEEECCC--CCcCCCCCCCCCCC
Confidence 4334445556667665 8888898886543 45666553 56 89999999999 88999999997642
Q ss_pred ccCCCCCceEEeccCCCCC-----CCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 163 CSSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 163 ~~~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+ ++....+.+. ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+
T Consensus 125 -------~-v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~ 178 (847)
T PRK14989 125 -------D-CFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP 178 (847)
T ss_pred -------C-eEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 2 2322222221 11246899999999999999999999999999999885
No 56
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.80 E-value=4e-19 Score=154.43 Aligned_cols=195 Identities=18% Similarity=0.239 Sum_probs=128.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (294)
.+++|||||||++|+.+|..|.+.. .++++||+++..- +..+... -..+..+..++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~plL~e---------------va~g~l~~~~i 59 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTPLLYE---------------VATGTLSESEI 59 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cchhhhh---------------hhcCCCChhhe
Confidence 3579999999999999999999985 8999999988521 1111100 01122344455
Q ss_pred HHHHHHHHHHcC-CCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccc
Q 022626 84 IEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF 162 (294)
Q Consensus 84 ~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~ 162 (294)
..-++..+...+ ++ ....+|++|+.++ .+|++.++ .. +.||+||+|+| +.+..+.+||..++
T Consensus 60 ~~p~~~~~~~~~~v~---~~~~~V~~ID~~~----k~V~~~~~-------~~-i~YD~LVvalG--s~~~~fgi~G~~E~ 122 (405)
T COG1252 60 AIPLRALLRKSGNVQ---FVQGEVTDIDRDA----KKVTLADL-------GE-ISYDYLVVALG--SETNYFGIPGAAEY 122 (405)
T ss_pred eccHHHHhcccCceE---EEEEEEEEEcccC----CEEEeCCC-------cc-ccccEEEEecC--CcCCcCCCCCHHHh
Confidence 555555555443 33 4556799997654 56888763 46 89999999999 99999999998765
Q ss_pred c-------cCCCCCceEEeccCCCC-CCCC-CCCeEEEEccCCcHHHHHHHHhhccC-------------eEEEEEccch
Q 022626 163 C-------SSATGTGEVIHSTQYKN-GKPY-GGKNVLVVGSGNSGMEIALDLANHAA-------------KTSLVVRSPM 220 (294)
Q Consensus 163 ~-------~~~~~~g~~~~~~~~~~-~~~~-~~~~v~VvG~G~~~~e~a~~l~~~~~-------------~v~~~~r~~~ 220 (294)
+ ++.+...++....+..+ .... .-..++|+|+|.+|+|+|.+|.+... +|+++++.
T Consensus 123 a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~-- 200 (405)
T COG1252 123 AFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAG-- 200 (405)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccC--
Confidence 2 00011111110001101 1110 12379999999999999999988743 67777776
Q ss_pred hhhhhHhhccCCHHHHHHHHHHHHH
Q 022626 221 VYLGVVLFKYVPFGWVDTLMVMLSR 245 (294)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (294)
+++++.++.++.+.....+.+
T Consensus 201 ----p~ILp~~~~~l~~~a~~~L~~ 221 (405)
T COG1252 201 ----PRILPMFPPKLSKYAERALEK 221 (405)
T ss_pred ----chhccCCCHHHHHHHHHHHHH
Confidence 788888989888876665554
No 57
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.80 E-value=1.2e-18 Score=166.21 Aligned_cols=158 Identities=27% Similarity=0.353 Sum_probs=108.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..++|+||||||||++||..|++.|++|+|||+.+.+||.+++. . |.+....++..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~-I-----------------------P~~Rlp~evL~ 593 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI-I-----------------------PQFRIPAELIQ 593 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee-c-----------------------ccccccHHHHH
Confidence 35799999999999999999999999999999999999876531 1 11211234455
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
+..+.+.+.+++. ++++.+ .+ .+++. .. ..||+||+|||+. .+..+.+||.+.
T Consensus 594 ~die~l~~~GVe~--~~gt~V-di-----------~le~L-------~~-~gYDaVILATGA~-~~~~l~IpG~~~---- 646 (1019)
T PRK09853 594 HDIEFVKAHGVKF--EFGCSP-DL-----------TVEQL-------KN-EGYDYVVVAIGAD-KNGGLKLEGGNQ---- 646 (1019)
T ss_pred HHHHHHHHcCCEE--EeCcee-EE-----------Ehhhh-------ee-ccCCEEEECcCCC-CCCCCCCCCccC----
Confidence 5556666677655 777765 12 12221 34 5689999999952 244456777541
Q ss_pred CCCCceEEeccCCCC------CCCCCCCeEEEEccCCcHHHHHHHHhhc-c-CeEEEEEccc
Q 022626 166 ATGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANH-A-AKTSLVVRSP 219 (294)
Q Consensus 166 ~~~~g~~~~~~~~~~------~~~~~~~~v~VvG~G~~~~e~a~~l~~~-~-~~v~~~~r~~ 219 (294)
+ +++..++.. .....+++|+|||+|++|+|+|..+.+. | .+|++++|++
T Consensus 647 ----g-V~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 647 ----N-VIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred ----C-ceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 1 222221111 1223589999999999999999998887 4 4899999984
No 58
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.1e-18 Score=140.86 Aligned_cols=217 Identities=20% Similarity=0.264 Sum_probs=140.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEec--CCCCCCCcCC-------CCCCcEEEecCCc----cccCCCCCCC
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILER--ENCYASIWKK-------YSYDRLRLHLAKQ----FCQLPHLPFP 71 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~--~~~~gg~w~~-------~~~~~~~~~~~~~----~~~~~~~~~~ 71 (294)
..++|++|||||.+||+||++++..|.+|.++|- ....|..|.- .|.|...++.... +.....+-|.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3578999999999999999999999999999993 2234555643 3444333332211 1111111111
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHcCCCceeeeCc-EEEEEEE-cCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCC
Q 022626 72 SS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQR-SVESASY-DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (294)
Q Consensus 72 ~~-~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~-~V~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~ 148 (294)
-. -..-+++..+.+-.++.++..+.-.++.++. +|+-+.. .+-.+...+...+..+ .++. ++++.+++|||
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~g---k~~~-~ta~~fvIatG-- 170 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKG---KERF-LTAENFVIATG-- 170 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCC---ceEE-eecceEEEEec--
Confidence 11 0234577888888888888765433223332 2222211 0011223344333222 2356 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchhhhhhHhh
Q 022626 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVYLGVVLF 228 (294)
Q Consensus 149 ~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~ 228 (294)
.+|+.|+|||..++ -+.|.+... ..+.+.+.+|||+|++|+|+|..|+..|.+||+..|+ -++
T Consensus 171 ~RPrYp~IpG~~Ey---------~ITSDDlFs-l~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-------I~L 233 (503)
T KOG4716|consen 171 LRPRYPDIPGAKEY---------GITSDDLFS-LPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-------ILL 233 (503)
T ss_pred CCCCCCCCCCceee---------eeccccccc-ccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-------eec
Confidence 99999999998775 366776666 5556788899999999999999999999999999999 334
Q ss_pred ccCCHHHHHHHHHHHH
Q 022626 229 KYVPFGWVDTLMVMLS 244 (294)
Q Consensus 229 ~~~~~~~~~~~~~~~~ 244 (294)
+-|+.++.+...+.+.
T Consensus 234 rGFDqdmae~v~~~m~ 249 (503)
T KOG4716|consen 234 RGFDQDMAELVAEHME 249 (503)
T ss_pred ccccHHHHHHHHHHHH
Confidence 5566666665554443
No 59
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.79 E-value=5.1e-19 Score=160.32 Aligned_cols=160 Identities=21% Similarity=0.284 Sum_probs=113.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
.+++|+||||||+|+++|..|++.|++|+|+|+.+.+||.+.+. . +.+....++..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 194 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------I---------PEFRLPKDIVD 194 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------C---------CCccCCHHHHH
Confidence 45799999999999999999999999999999999888865431 0 11112246666
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
+..+.+++++++. ++++.+.. .+.+++ .. +.||+||+|||. ..|..+.+||.+.
T Consensus 195 ~~~~~l~~~gv~~--~~~~~v~~----------~v~~~~--------~~-~~~d~vvlAtGa-~~~~~~~i~G~~~---- 248 (457)
T PRK11749 195 REVERLLKLGVEI--RTNTEVGR----------DITLDE--------LR-AGYDAVFIGTGA-GLPRFLGIPGENL---- 248 (457)
T ss_pred HHHHHHHHcCCEE--EeCCEECC----------ccCHHH--------HH-hhCCEEEEccCC-CCCCCCCCCCccC----
Confidence 6777777777655 77765511 122222 23 578999999995 2466667888652
Q ss_pred CCCCceEEeccCCCC--------CCCCCCCeEEEEccCCcHHHHHHHHhhccC-eEEEEEccc
Q 022626 166 ATGTGEVIHSTQYKN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (294)
Q Consensus 166 ~~~~g~~~~~~~~~~--------~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~-~v~~~~r~~ 219 (294)
.| +++..++.. .....+++|+|||+|++|+|+|..+.+.|. +|++++|++
T Consensus 249 ---~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 249 ---GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred ---CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 22 222221111 112258999999999999999999999987 899999875
No 60
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.79 E-value=1e-18 Score=167.12 Aligned_cols=165 Identities=21% Similarity=0.227 Sum_probs=116.5
Q ss_pred EEEECCChHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 10 VIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 10 vvIIGaG~aGl~aA~~L~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
|||||+|++|+++|..|++. +++|+|||+++.++ |....+ +.. ..+..+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--~~~------------l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--SSV------------LQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--cHH------------HCCCCCHHHccCC
Confidence 68999999999999999875 46999999998753 222111 110 0111223334333
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~ 166 (294)
..++.++.+++. +++++|+.++.+. +.|.+.++ .+ +.||+||+||| +.|+.|++||.+.
T Consensus 60 ~~~~~~~~gv~~--~~g~~V~~Id~~~----k~V~~~~g-------~~-~~yD~LVlATG--s~p~~p~ipG~~~----- 118 (785)
T TIGR02374 60 SKDWYEKHGITL--YTGETVIQIDTDQ----KQVITDAG-------RT-LSYDKLILATG--SYPFILPIPGADK----- 118 (785)
T ss_pred CHHHHHHCCCEE--EcCCeEEEEECCC----CEEEECCC-------cE-eeCCEEEECCC--CCcCCCCCCCCCC-----
Confidence 444556667665 8899999997543 56777654 56 89999999999 8899999999763
Q ss_pred CCCceEEeccCCCCC-----CCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 167 TGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 167 ~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+ ++......+. ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+
T Consensus 119 --~~-v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 119 --KG-VYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred --CC-EEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 23 2322222111 11246899999999999999999999999999999885
No 61
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.79 E-value=1.8e-18 Score=151.77 Aligned_cols=174 Identities=20% Similarity=0.228 Sum_probs=112.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHH
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (294)
..+++|+|||+|++|+++|..|++.|++|++||+.+.++|.+... + +. ...+.+.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~--------------~~--------~~~~~~~~~ 72 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG-I--------------PE--------FRIPIERVR 72 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec-C--------------cc--------cccCHHHHH
Confidence 346799999999999999999999999999999999888765321 0 00 011233444
Q ss_pred HHHHHHHHHcCCCceeeeCcEEEEEEE--cCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccc
Q 022626 85 EHLDHYVSHFNIGPSIRYQRSVESASY--DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF 162 (294)
Q Consensus 85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~ 162 (294)
..+.++.+ .++.. +.++.+..+.. +...+.+....... +... +.||+||+|||. ..|..|++||.+.
T Consensus 73 ~~~~~l~~-~~i~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~d~lviAtGs-~~~~~~~ipg~~~- 141 (352)
T PRK12770 73 EGVKELEE-AGVVF--HTRTKVCCGEPLHEEEGDEFVERIVSL-----EELV-KKYDAVLIATGT-WKSRKLGIPGEDL- 141 (352)
T ss_pred HHHHHHHh-CCeEE--ecCcEEeeccccccccccccccccCCH-----HHHH-hhCCEEEEEeCC-CCCCcCCCCCccc-
Confidence 45554444 36554 77777755432 11112222221111 1134 689999999993 2477788888652
Q ss_pred ccCCCCCceEEecc-------C-------CCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCe-EEEEEccc
Q 022626 163 CSSATGTGEVIHST-------Q-------YKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP 219 (294)
Q Consensus 163 ~~~~~~~g~~~~~~-------~-------~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~-v~~~~r~~ 219 (294)
.+ +..+. . ........+++++|||+|.+|+|+|..|...|.+ |+++.|++
T Consensus 142 ------~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 142 ------PG-VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred ------cC-ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 22 22111 0 0111123478999999999999999999988886 99999875
No 62
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.78 E-value=1.5e-19 Score=151.50 Aligned_cols=217 Identities=13% Similarity=0.141 Sum_probs=137.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc-CCCCCCcEEEecCCccccCCCCC-CC-C---CCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQLPHLP-FP-S---SYPMFVS 79 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~ 79 (294)
..+||+|||+||+|..||...++.|++.+++|++..+||++ +..|.|+..+....+++..-... +. . -++.-.+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 46999999999999999999999999999999999999854 55667766554443333222110 00 0 0122235
Q ss_pred HHHHHHHHHHHHHHcC--CCceeeeC-cEEEEEEE---cCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 80 RAQFIEHLDHYVSHFN--IGPSIRYQ-RSVESASY---DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 80 ~~~~~~~l~~~~~~~~--l~~~i~~~-~~V~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
.+.++......++++. +.. .|. ..|+.+.- -.+....++.-.++ +... +.++++|+||| |. .
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~--lfkknkV~~~kG~gsf~~p~~V~v~k~dg-----~~~i-i~aKnIiiATG--Se--V 185 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIEN--LFKKNKVTYVKGFGSFLDPNKVSVKKIDG-----EDQI-IKAKNIIIATG--SE--V 185 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHH--HhhhcCeEEEeeeEeecCCceEEEeccCC-----CceE-EeeeeEEEEeC--Cc--c
Confidence 5666666666555541 111 111 12333321 11122333333333 2367 89999999999 52 3
Q ss_pred CCCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc----hh--hhhhHh
Q 022626 154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP----MV--YLGVVL 227 (294)
Q Consensus 154 p~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~----~~--~~~~~~ 227 (294)
+++||...- ...++.|..... ....|++++|||+|.+|+|+..-+.++|.+||+++..+ .+ +++...
T Consensus 186 ~~~PGI~ID------ekkIVSStgALs-L~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~ 258 (506)
T KOG1335|consen 186 TPFPGITID------EKKIVSSTGALS-LKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAF 258 (506)
T ss_pred CCCCCeEec------CceEEecCCccc-hhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHH
Confidence 356676532 234454444433 55568999999999999999999999999999998886 22 556666
Q ss_pred hccCCHHHHHHHHH
Q 022626 228 FKYVPFGWVDTLMV 241 (294)
Q Consensus 228 ~~~~~~~~~~~~~~ 241 (294)
++.|..+.+++.+.
T Consensus 259 qr~L~kQgikF~l~ 272 (506)
T KOG1335|consen 259 QRVLQKQGIKFKLG 272 (506)
T ss_pred HHHHHhcCceeEec
Confidence 66555555555544
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.78 E-value=2.2e-18 Score=167.71 Aligned_cols=161 Identities=19% Similarity=0.239 Sum_probs=113.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.++|+|||||||||+||..|++.|++|+|||+.+.+||..++. .+.+....++...
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g------------------------ip~~rl~~e~~~~ 485 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG------------------------IPSFRLPRDIIDR 485 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc------------------------CCccCCCHHHHHH
Confidence 4799999999999999999999999999999999888764321 1222233456666
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~ 166 (294)
..+.+++++++. ++++.+ + . .++.++.. .. ..||+||+|||+ ..|+.+++||.+.
T Consensus 486 ~~~~l~~~Gv~~--~~~~~v-g-------~--~~~~~~l~------~~-~~yDaViIATGa-~~pr~l~IpG~~l----- 540 (1006)
T PRK12775 486 EVQRLVDIGVKI--ETNKVI-G-------K--TFTVPQLM------ND-KGFDAVFLGVGA-GAPTFLGIPGEFA----- 540 (1006)
T ss_pred HHHHHHHCCCEE--EeCCcc-C-------C--ccCHHHHh------hc-cCCCEEEEecCC-CCCCCCCCCCcCC-----
Confidence 777777788765 777543 1 1 12222210 13 468999999995 2578888998642
Q ss_pred CCCceEEeccCC--------------CCCCCCCCCeEEEEccCCcHHHHHHHHhhccC-eEEEEEccc
Q 022626 167 TGTGEVIHSTQY--------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (294)
Q Consensus 167 ~~~g~~~~~~~~--------------~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~-~v~~~~r~~ 219 (294)
.| +++..++ .+.....+++|+|||+|++|+|+|..+.++|. .|++++|+.
T Consensus 541 --~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 541 --GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred --CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 22 3333211 12223468999999999999999999999987 589998875
No 64
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.77 E-value=2.4e-18 Score=154.43 Aligned_cols=198 Identities=17% Similarity=0.153 Sum_probs=118.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
.+++|||||||++|+.+|..|.+.+++|+|||+++..- |..+ . +....+..+.+++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---l------------~~~~~g~~~~~~~~~ 66 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---L------------PQTTTGTLEFRSICE 66 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---H------------HHhcccCCChHHhHH
Confidence 45799999999999999999987788999999987521 1110 0 000011223344444
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccC---CCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccc
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL---SPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF 162 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~ 162 (294)
.++..++..+.. ....+|++|+.++ ....+...+.. .. ...+ +.||+||+||| +.+..|.+||.++.
T Consensus 67 ~~~~~~~~~~~~---~i~~~V~~Id~~~--~~v~~~~~~~~~~~~~--~g~~-i~yD~LViAtG--s~~~~~~ipG~~e~ 136 (424)
T PTZ00318 67 PVRPALAKLPNR---YLRAVVYDVDFEE--KRVKCGVVSKSNNANV--NTFS-VPYDKLVVAHG--ARPNTFNIPGVEER 136 (424)
T ss_pred HHHHHhccCCeE---EEEEEEEEEEcCC--CEEEEecccccccccC--CceE-ecCCEEEECCC--cccCCCCCCCHHHc
Confidence 455555555543 4567899997654 33333221110 00 1157 89999999999 88888889987532
Q ss_pred ccCCCCCceEEeccCC----------C-----CC-CCCCCCeEEEEccCCcHHHHHHHHhhc--------------cCeE
Q 022626 163 CSSATGTGEVIHSTQY----------K-----NG-KPYGGKNVLVVGSGNSGMEIALDLANH--------------AAKT 212 (294)
Q Consensus 163 ~~~~~~~g~~~~~~~~----------~-----~~-~~~~~~~v~VvG~G~~~~e~a~~l~~~--------------~~~v 212 (294)
. ..... +.+...+ . .. .....++++|||+|.+|+|+|..|... +.+|
T Consensus 137 ~--~~~~~-~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~V 213 (424)
T PTZ00318 137 A--FFLKE-VNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKV 213 (424)
T ss_pred C--CCCCC-HHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEE
Confidence 0 00000 0000000 0 00 011235899999999999999999863 6789
Q ss_pred EEEEccchhhhhhHhhccCCHHHHHHHHHHHH
Q 022626 213 SLVVRSPMVYLGVVLFKYVPFGWVDTLMVMLS 244 (294)
Q Consensus 213 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (294)
+++++++ .+++.++....+.....+.
T Consensus 214 tlv~~~~------~ll~~~~~~~~~~~~~~L~ 239 (424)
T PTZ00318 214 TVLEAGS------EVLGSFDQALRKYGQRRLR 239 (424)
T ss_pred EEEcCCC------cccccCCHHHHHHHHHHHH
Confidence 9999883 3334455555555544443
No 65
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.77 E-value=2.6e-18 Score=161.29 Aligned_cols=159 Identities=19% Similarity=0.266 Sum_probs=110.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.++|+||||||+|+++|..|++.|++|+|||+.+.+||.|++. + +.+....++.++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~ 248 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------I---------PRFRLPESVIDA 248 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------C---------CCCCCCHHHHHH
Confidence 4799999999999999999999999999999999999987532 1 111222345555
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~ 166 (294)
..+.+.+++++. ++++.+. . .+..++ .. ..||+||+|||+. .+..+++||.+.
T Consensus 249 ~~~~l~~~Gv~i--~~~~~v~-~---------dv~~~~--------~~-~~~DaVilAtGa~-~~~~~~ipG~~~----- 301 (652)
T PRK12814 249 DIAPLRAMGAEF--RFNTVFG-R---------DITLEE--------LQ-KEFDAVLLAVGAQ-KASKMGIPGEEL----- 301 (652)
T ss_pred HHHHHHHcCCEE--EeCCccc-C---------ccCHHH--------HH-hhcCEEEEEcCCC-CCCCCCCCCcCc-----
Confidence 556666777655 6666431 1 122222 12 3589999999942 234567888653
Q ss_pred CCCceEEeccCCC-----CCCCCCCCeEEEEccCCcHHHHHHHHhhccC-eEEEEEccc
Q 022626 167 TGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (294)
Q Consensus 167 ~~~g~~~~~~~~~-----~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~-~v~~~~r~~ 219 (294)
.| ++...++. ......+++|+|||+|++|+|+|..+.+.|. +||+++|++
T Consensus 302 --~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 302 --PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred --CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 33 22221111 1123458999999999999999999999986 699999885
No 66
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.77 E-value=3.6e-18 Score=154.35 Aligned_cols=190 Identities=15% Similarity=0.203 Sum_probs=112.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCcEEEecCCcccc-C---CCCCCCCCCCCCCCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ-L---PHLPFPSSYPMFVSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 81 (294)
++||+|||+||+|..||.. ..|.+|+++|++. +|| |.+..|.|+..+........ . ..+-.... ....+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence 5899999999999998654 4699999999965 555 55667777765432221111 1 11111100 1124666
Q ss_pred HHHHHHHH-HHHHc-CCCceeeeC---cEEEEEEEcC-CCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022626 82 QFIEHLDH-YVSHF-NIGPSIRYQ---RSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (294)
Q Consensus 82 ~~~~~l~~-~~~~~-~l~~~i~~~---~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~ 155 (294)
.++++..+ ..+.. ......... ..|+-+.... -.+.++|.+.++ ++ ++||+||+||| ++|..|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g-------~~-~~~d~lIiATG--s~p~~p~ 147 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDG-------EE-ITGDQIVIAAG--SRPYIPP 147 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCC-------cE-EEeCEEEEEEC--CCCCCCC
Confidence 77776655 33321 100000110 1122111100 013455666543 46 89999999999 8888776
Q ss_pred CCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 156 IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 156 i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+.+... -.+..+.+.... ...+++++|||+|++|+|+|..|.+.|.+||++++.+
T Consensus 148 ~~~~~~--------~~~~~~~~~~~l-~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 148 AIADSG--------VRYHTNEDIMRL-PELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CCCCCC--------CEEEcHHHHHhh-hhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 433211 112333332221 1237899999999999999999999999999999984
No 67
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.75 E-value=4.8e-17 Score=138.23 Aligned_cols=191 Identities=26% Similarity=0.385 Sum_probs=130.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC-CCeEEEecCCCCCCCcCCCCC-CcEEEecC-----------CccccCCCCCCC-
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYSY-DRLRLHLA-----------KQFCQLPHLPFP- 71 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g-~~v~iie~~~~~gg~w~~~~~-~~~~~~~~-----------~~~~~~~~~~~~- 71 (294)
..+|++.||-||+-|++|..|.+.+ .++..+||++.+. |+..+. ++..+.+| ...++|-.+-..
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 4689999999999999999999885 7899999998764 765432 22222111 111111000000
Q ss_pred -------CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEE--EEEeccCCCCceeEEEEeeCEEE
Q 022626 72 -------SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN--VKASNLLSPGREIEEYYSGRFLV 142 (294)
Q Consensus 72 -------~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~d~vv 142 (294)
..-..++++.++.+|+++.+.++ ...+|+++|+.|...+.+.... +.+.++ .+ ++|+.||
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l---~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~-------~~-y~ar~lV 150 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQL---PSLRFGEEVTDISSLDGDAVVRLFVVTANG-------TV-YRARNLV 150 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhC---CccccCCeeccccccCCcceeEEEEEcCCC-------cE-EEeeeEE
Confidence 00124579999999999999998 3339999999774333233333 223222 46 8999999
Q ss_pred EccCCCCCCCCCCC-CCccccccCCCCCceEEeccCCCCC-CCCCC-CeEEEEccCCcHHHHHHHHhhc----cCeEEEE
Q 022626 143 VASGETTNPFTPDI-RGLCSFCSSATGTGEVIHSTQYKNG-KPYGG-KNVLVVGSGNSGMEIALDLANH----AAKTSLV 215 (294)
Q Consensus 143 ~AtG~~~~p~~p~i-~g~~~~~~~~~~~g~~~~~~~~~~~-~~~~~-~~v~VvG~G~~~~e~a~~l~~~----~~~v~~~ 215 (294)
+++| .+|.+|+. ..+. ..+++|++++..- ..... ++|.|||+|.||.|+...|... ..++.|+
T Consensus 151 lg~G--~~P~IP~~f~~l~--------~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~wi 220 (436)
T COG3486 151 LGVG--TQPYIPPCFRSLI--------GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWI 220 (436)
T ss_pred EccC--CCcCCChHHhCcC--------ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceee
Confidence 9999 99999952 2222 3378999998753 22333 4499999999999999998875 2358999
Q ss_pred Eccc
Q 022626 216 VRSP 219 (294)
Q Consensus 216 ~r~~ 219 (294)
.|++
T Consensus 221 tR~~ 224 (436)
T COG3486 221 TRSS 224 (436)
T ss_pred eccC
Confidence 9998
No 68
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.74 E-value=1.7e-17 Score=159.19 Aligned_cols=157 Identities=24% Similarity=0.318 Sum_probs=103.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.++|+||||||||++||..|++.|++|+|||+.+.+||..... . +.+....+..++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-I-----------------------P~~rlp~e~l~~ 592 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-I-----------------------PEFRISAESIQK 592 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-c-----------------------cccCCCHHHHHH
Confidence 4799999999999999999999999999999999988875321 1 111111234444
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~ 166 (294)
..+.+..++++. +++... . +.++.. .. ..||+||+|||+. .+..+.++|....
T Consensus 593 ~ie~l~~~GVe~--~~g~~~----------d--~~ve~l-------~~-~gYDaVIIATGA~-~~~~l~I~G~~~~---- 645 (1012)
T TIGR03315 593 DIELVKFHGVEF--KYGCSP----------D--LTVAEL-------KN-QGYKYVILAIGAW-KHGPLRLEGGGER---- 645 (1012)
T ss_pred HHHHHHhcCcEE--EEeccc----------c--eEhhhh-------hc-ccccEEEECCCCC-CCCCCCcCCCCcc----
Confidence 445556666554 554210 0 112221 23 5689999999952 2344466664311
Q ss_pred CCCceEEeccCC----CC--CCCCCCCeEEEEccCCcHHHHHHHHhhc-c-CeEEEEEccc
Q 022626 167 TGTGEVIHSTQY----KN--GKPYGGKNVLVVGSGNSGMEIALDLANH-A-AKTSLVVRSP 219 (294)
Q Consensus 167 ~~~g~~~~~~~~----~~--~~~~~~~~v~VvG~G~~~~e~a~~l~~~-~-~~v~~~~r~~ 219 (294)
++...++ .. .....+++|+|||+|++|+|+|..+.+. | .+|++++|++
T Consensus 646 -----v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 646 -----VLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred -----eeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 1221111 11 1223589999999999999999998876 6 4899999884
No 69
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.74 E-value=1.3e-17 Score=151.61 Aligned_cols=159 Identities=22% Similarity=0.270 Sum_probs=108.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.++|+||||||+|+++|..|++.|++|+|||+.+.+||.+.+. + +.+....++...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~ 198 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------I---------PDFKLEKEVIDR 198 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------C---------CcccCCHHHHHH
Confidence 4799999999999999999999999999999999988876532 0 112222345555
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~ 166 (294)
..+.+.++++.. ++++.+.. + +..+. .. ..||+||+|||. ..+..+.+||.+.
T Consensus 199 ~~~~~~~~gv~~--~~~~~v~~----~------~~~~~--------~~-~~~d~vvlAtGa-~~~~~l~ipG~~~----- 251 (471)
T PRK12810 199 RIELMEAEGIEF--RTNVEVGK----D------ITAEE--------LL-AEYDAVFLGTGA-YKPRDLGIPGRDL----- 251 (471)
T ss_pred HHHHHHhCCcEE--EeCCEECC----c------CCHHH--------HH-hhCCEEEEecCC-CCCCcCCCCCccC-----
Confidence 556667777665 77775521 0 11111 23 478999999994 2366677888652
Q ss_pred CCCceEEecc-------------CCCCCCCCCCCeEEEEccCCcHHHHHHHHhhccC-eEEEEEccc
Q 022626 167 TGTGEVIHST-------------QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (294)
Q Consensus 167 ~~~g~~~~~~-------------~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~-~v~~~~r~~ 219 (294)
.| +.+.. +........+++|+|||+|++|+|+|..+.+.|. +|+.+.+.+
T Consensus 252 --~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 252 --DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred --CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 23 22111 0111123458999999999999999998888875 789665554
No 70
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.74 E-value=3e-17 Score=154.72 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=109.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+. + +.+....++..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g-i-----------------------p~~~l~~~~~~ 381 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG-I-----------------------PAFKLDKSLLA 381 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec-C-----------------------CCccCCHHHHH
Confidence 35799999999999999999999999999999999999876542 1 11111234555
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
+..+.+++++++. ++++.|.. .+..+. .. ..||.|++|||++ .+..+.+||.+.
T Consensus 382 ~~~~~~~~~Gv~~--~~~~~v~~----------~i~~~~--------~~-~~~DavilAtGa~-~~~~l~i~g~~~---- 435 (654)
T PRK12769 382 RRREIFSAMGIEF--ELNCEVGK----------DISLES--------LL-EDYDAVFVGVGTY-RSMKAGLPNEDA---- 435 (654)
T ss_pred HHHHHHHHCCeEE--ECCCEeCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCCC----
Confidence 5566677777655 77776521 011221 12 4689999999962 344456676542
Q ss_pred CCCCceEEe-------------ccCCCCC--CCCCCCeEEEEccCCcHHHHHHHHhhccC-eEEEEEccc
Q 022626 166 ATGTGEVIH-------------STQYKNG--KPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (294)
Q Consensus 166 ~~~~g~~~~-------------~~~~~~~--~~~~~~~v~VvG~G~~~~e~a~~l~~~~~-~v~~~~r~~ 219 (294)
.|.... .....+. ....+++|+|||+|++|+|+|..+.+.|. +||+++|++
T Consensus 436 ---~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 436 ---PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred ---CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 232110 0011110 12457999999999999999999888886 799999875
No 71
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.72 E-value=9.8e-17 Score=145.40 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=110.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..++|+|||+||+|+++|..|++.|++|+++|+.+.+||.+++. + +.+....++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g-i-----------------------p~~~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG-I-----------------------PSFKLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec-C-----------------------ccccCCHHHHH
Confidence 35799999999999999999999999999999999998876532 1 11112235666
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCC-CCCCCCCcccccc
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP-FTPDIRGLCSFCS 164 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p-~~p~i~g~~~~~~ 164 (294)
+..+.++++|++. ++++.|.. .+..++ .. ..||.||+||| +.+ ..+++||.+.
T Consensus 196 ~~~~~~~~~Gv~~--~~~~~v~~----------~~~~~~--------~~-~~~D~vilAtG--a~~~~~~~i~g~~~--- 249 (467)
T TIGR01318 196 RRREIFTAMGIEF--HLNCEVGR----------DISLDD--------LL-EDYDAVFLGVG--TYRSMRGGLPGEDA--- 249 (467)
T ss_pred HHHHHHHHCCCEE--ECCCEeCC----------ccCHHH--------HH-hcCCEEEEEeC--CCCCCcCCCCCcCC---
Confidence 6677778888766 77776621 022222 23 46899999999 443 3356777542
Q ss_pred CCCCCceEEecc--------------CCCC--CCCCCCCeEEEEccCCcHHHHHHHHhhccC-eEEEEEccc
Q 022626 165 SATGTGEVIHST--------------QYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (294)
Q Consensus 165 ~~~~~g~~~~~~--------------~~~~--~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~-~v~~~~r~~ 219 (294)
.| +.+.. .... .....+++++|||+|++|+|+|..+.+.|. +||+++|++
T Consensus 250 ----~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 250 ----PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred ----CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 22 11110 0000 012357999999999999999999999985 799999985
No 72
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.71 E-value=1.6e-16 Score=149.26 Aligned_cols=161 Identities=15% Similarity=0.171 Sum_probs=111.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..++|+|||+||+|+++|..|++.|++|+|||+.+.+||.|++... .+.-..++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip------------------------~~~l~~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIP------------------------PFKLDKTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCC------------------------cccCCHHHHH
Confidence 3589999999999999999999999999999999999998775311 1111134555
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
...+.++..|++. ++++++.. .+.+.+ .. ..||.|++|||+. .+..+.+||.+.
T Consensus 365 ~~~~~~~~~Gv~~--~~~~~v~~----------~~~~~~--------l~-~~~DaV~latGa~-~~~~~~i~g~~~---- 418 (639)
T PRK12809 365 QRREIFTAMGIDF--HLNCEIGR----------DITFSD--------LT-SEYDAVFIGVGTY-GMMRADLPHEDA---- 418 (639)
T ss_pred HHHHHHHHCCeEE--EcCCccCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCcc----
Confidence 5566777777665 77776521 122222 23 4689999999952 344556777542
Q ss_pred CCCCceEEe----------ccCCCC-----CCCCCCCeEEEEccCCcHHHHHHHHhhccC-eEEEEEccc
Q 022626 166 ATGTGEVIH----------STQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (294)
Q Consensus 166 ~~~~g~~~~----------~~~~~~-----~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~-~v~~~~r~~ 219 (294)
.|.+.. ...... .....+++++|||+|++|+|+|..+.+.|. +||+++|++
T Consensus 419 ---~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 419 ---PGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred ---CCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 232210 000100 122357999999999999999999888884 899999885
No 73
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.70 E-value=1.6e-16 Score=140.17 Aligned_cols=160 Identities=18% Similarity=0.273 Sum_probs=106.5
Q ss_pred eEEEECCChHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 9 EVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
+|+|||||++|+.+|..|.++ +.+|+|||+++..- |... . +....+..+.+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~---~------------~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM---L------------PGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch---h------------hHHHheeCCHHHhcc
Confidence 589999999999999999644 68999999887521 1110 0 000011223445555
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
.+.+.+++.+++. .. .+|++++.+. ..|.++++ ++ +.||+||+||| +.|..|.+||....
T Consensus 59 ~~~~~~~~~gv~~--~~-~~v~~id~~~----~~V~~~~g-------~~-~~yD~LviAtG--~~~~~~~i~g~~~~--- 118 (364)
T TIGR03169 59 DLRRLARQAGARF--VI-AEATGIDPDR----RKVLLANR-------PP-LSYDVLSLDVG--STTPLSGVEGAADL--- 118 (364)
T ss_pred cHHHHHHhcCCEE--EE-EEEEEEeccc----CEEEECCC-------Cc-ccccEEEEccC--CCCCCCCCCccccc---
Confidence 6667777777664 44 5788887654 25777654 46 89999999999 88888899985432
Q ss_pred CCCCceEEecc------C----CCCC--CCCCCCeEEEEccCCcHHHHHHHHhhc----c--CeEEEEE
Q 022626 166 ATGTGEVIHST------Q----YKNG--KPYGGKNVLVVGSGNSGMEIALDLANH----A--AKTSLVV 216 (294)
Q Consensus 166 ~~~~g~~~~~~------~----~~~~--~~~~~~~v~VvG~G~~~~e~a~~l~~~----~--~~v~~~~ 216 (294)
++... . +... ....+++++|||+|.+|+|+|..|... + .+|+++.
T Consensus 119 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~ 181 (364)
T TIGR03169 119 ------AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA 181 (364)
T ss_pred ------ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 01000 0 0000 012357999999999999999999853 3 4899983
No 74
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.70 E-value=3.3e-16 Score=142.56 Aligned_cols=160 Identities=23% Similarity=0.259 Sum_probs=108.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||...+. + +.+....++..+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~~ 198 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------------I---------PNMKLDKAIVDR 198 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------------C---------CCccCCHHHHHH
Confidence 4799999999999999999999999999999999888764321 0 111112344555
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~ 166 (294)
..+.+++.++.. ++++.+. . .+..+. .. ..||.|++|||.. .|..+++||.+.
T Consensus 199 ~~~~~~~~Gv~~--~~~~~v~-~---------~~~~~~--------~~-~~~d~VilAtGa~-~~~~l~i~G~~~----- 251 (485)
T TIGR01317 199 RIDLLSAEGIDF--VTNTEIG-V---------DISADE--------LK-EQFDAVVLAGGAT-KPRDLPIPGREL----- 251 (485)
T ss_pred HHHHHHhCCCEE--ECCCEeC-C---------ccCHHH--------HH-hhCCEEEEccCCC-CCCcCCCCCcCC-----
Confidence 556667777665 7777662 1 011111 23 5789999999942 377788888642
Q ss_pred CCCceEEe-----cc-------CC--CCCCCCCCCeEEEEccCCcHHHHHHHHhhcc-CeEEEEEccc
Q 022626 167 TGTGEVIH-----ST-------QY--KNGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP 219 (294)
Q Consensus 167 ~~~g~~~~-----~~-------~~--~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~-~~v~~~~r~~ 219 (294)
.|.... .. .. .......+++|+|||+|++|+|+|..+.+.+ .+|+++++.+
T Consensus 252 --~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 252 --KGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred --CCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 232110 00 00 0012246799999999999999988887776 5799998775
No 75
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.70 E-value=3.4e-16 Score=138.89 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=39.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHH-hCCCCeEEEecCCCCCCCcCCC
Q 022626 5 AAGVEVIMVGAGTSGLATAACLS-LQSIPYVILERENCYASIWKKY 49 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~-~~g~~v~iie~~~~~gg~w~~~ 49 (294)
..+++|+||||||||+.||..|+ +.|++|+|||+.+.+||++++.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 34679999999999999999865 5699999999999999998864
No 76
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.69 E-value=5.1e-16 Score=151.95 Aligned_cols=176 Identities=13% Similarity=0.138 Sum_probs=111.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.+||+||||||||++||..|++.|++|+|+|+++.+||.+.... . .. +. .+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---------~---~~---------~g-~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---------E---TI---------DG-KPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---------c---cc---------CC-ccHHHHHHH
Confidence 57999999999999999999999999999999999998764320 0 00 11 122233333
Q ss_pred HHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEE-Ee-------ccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCC
Q 022626 87 LDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVK-AS-------NLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR 157 (294)
Q Consensus 87 l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~-~~-------~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~ 157 (294)
+.+.+..+ ++.. +.+++|.++.... ....+. .. .+...+ ...+ +.+|.||+||| +.+..|++|
T Consensus 221 ~~~~l~~~~~v~v--~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~-~~~~-i~a~~VILATG--a~~r~~pip 292 (985)
T TIGR01372 221 TVAELTAMPEVTL--LPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRE-RLWR-IRAKRVVLATG--AHERPLVFA 292 (985)
T ss_pred HHHHHhcCCCcEE--EcCCEEEEEecCC--eEEEEEEeeeccccccCCcccc-ceEE-EEcCEEEEcCC--CCCcCCCCC
Confidence 33333333 2443 7788887764311 011110 00 000000 1136 89999999999 777778888
Q ss_pred CccccccCCCCCceEEec--cCCCC-CCCCCCCeEEEEccCCcHHHHHHHHhhccC-eEEEEEccc
Q 022626 158 GLCSFCSSATGTGEVIHS--TQYKN-GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (294)
Q Consensus 158 g~~~~~~~~~~~g~~~~~--~~~~~-~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~-~v~~~~r~~ 219 (294)
|.+. +|..... ..+.. .....+++++|||+|.+|+|+|..|.+.|. .|+++++++
T Consensus 293 G~~~-------pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 293 NNDR-------PGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred CCCC-------CCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 8653 3322110 11111 122357999999999999999999999994 578887764
No 77
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.68 E-value=1.2e-16 Score=138.51 Aligned_cols=166 Identities=23% Similarity=0.300 Sum_probs=117.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (294)
.+.++|||+|++|..|+..+.+.|+ +++++-++..+. |+.. ..++..... ...+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~--~Ls~~~~~~--------------~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRA--RLSKFLLTV--------------GEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccch--hcccceeec--------------ccccc
Confidence 4689999999999999999999987 678887665422 2221 111111110 01112
Q ss_pred HHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022626 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (294)
Q Consensus 85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~ 164 (294)
....++.++.+++. ++++.|+.++... .+|.+.++ +. +.|+++++||| +.+..|++||.+..
T Consensus 131 ~r~~e~Yke~gIe~--~~~t~v~~~D~~~----K~l~~~~G-------e~-~kys~LilATG--s~~~~l~~pG~~~~-- 192 (478)
T KOG1336|consen 131 KRTPEFYKEKGIEL--ILGTSVVKADLAS----KTLVLGNG-------ET-LKYSKLIIATG--SSAKTLDIPGVELK-- 192 (478)
T ss_pred ccChhhHhhcCceE--EEcceeEEeeccc----cEEEeCCC-------ce-eecceEEEeec--CccccCCCCCcccc--
Confidence 22233556667776 9999999996644 56888776 67 89999999999 89999999998632
Q ss_pred CCCCCceEEeccCCCCC-----CCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 165 SATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 165 ~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+....+..++ ......+|+++|+|.+|+|+|..|...+.+||++++.+
T Consensus 193 ------nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~ 246 (478)
T KOG1336|consen 193 ------NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP 246 (478)
T ss_pred ------ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc
Confidence 22333333222 11236789999999999999999999999999999996
No 78
>PRK13984 putative oxidoreductase; Provisional
Probab=99.67 E-value=3.8e-16 Score=146.29 Aligned_cols=157 Identities=17% Similarity=0.245 Sum_probs=106.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..++|+|||+|++|+++|..|.+.|++|+|+|+.+.+||.+.+. + +.+...+++..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i---------~~~~~~~~~~~ 337 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------I---------PSYRLPDEALD 337 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------C---------CcccCCHHHHH
Confidence 45799999999999999999999999999999999888865422 1 11111234455
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
...+.++++++.. ++++.|.. + +..+. .. ..||+||+|||. ..|+.+++||.+.
T Consensus 338 ~~~~~~~~~gv~~--~~~~~v~~----~------~~~~~--------~~-~~yD~vilAtGa-~~~r~l~i~G~~~---- 391 (604)
T PRK13984 338 KDIAFIEALGVKI--HLNTRVGK----D------IPLEE--------LR-EKHDAVFLSTGF-TLGRSTRIPGTDH---- 391 (604)
T ss_pred HHHHHHHHCCcEE--ECCCEeCC----c------CCHHH--------HH-hcCCEEEEEcCc-CCCccCCCCCcCC----
Confidence 5555667777665 77776621 0 11111 23 578999999994 2356778888653
Q ss_pred CCCCceEEeccCCC---------C-CCCCCCCeEEEEccCCcHHHHHHHHhhccC------eEEEEE
Q 022626 166 ATGTGEVIHSTQYK---------N-GKPYGGKNVLVVGSGNSGMEIALDLANHAA------KTSLVV 216 (294)
Q Consensus 166 ~~~~g~~~~~~~~~---------~-~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~------~v~~~~ 216 (294)
.+ +....++. . .....+++|+|||+|++|+|+|..+.+++. +|+++.
T Consensus 392 ---~g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 392 ---PD-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred ---cC-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 22 22221111 0 012246899999999999999999998753 788874
No 79
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.66 E-value=6.2e-16 Score=129.95 Aligned_cols=169 Identities=21% Similarity=0.166 Sum_probs=112.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (294)
..++|+|||+||||+.+|..|+++ +++|+|+|+.+.+.|+.++..- |+++.-..+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA-----------------------PDHpEvKnv 75 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA-----------------------PDHPEVKNV 75 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC-----------------------CCCcchhhH
Confidence 356999999999999999999985 6899999999999998776522 333333445
Q ss_pred HHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc--
Q 022626 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS-- 161 (294)
Q Consensus 84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~-- 161 (294)
..-+.+.+++..... ..|.+|- -.+.++.. + -.||.||+|.|+ ..++..+|||.+.
T Consensus 76 intFt~~aE~~rfsf--~gNv~vG----------~dvsl~eL--------~-~~ydavvLaYGa-~~dR~L~IPGe~l~~ 133 (468)
T KOG1800|consen 76 INTFTKTAEHERFSF--FGNVKVG----------RDVSLKEL--------T-DNYDAVVLAYGA-DGDRRLDIPGEELSG 133 (468)
T ss_pred HHHHHHHhhccceEE--Eecceec----------ccccHHHH--------h-hcccEEEEEecC-CCCcccCCCCccccc
Confidence 555566666644332 4443330 01333332 2 357999999996 4677789999862
Q ss_pred cccCCCCCceEEeccCCC-CCCCCCCCeEEEEccCCcHHHHHHHHhhc----------------------cCeEEEEEcc
Q 022626 162 FCSSATGTGEVIHSTQYK-NGKPYGGKNVLVVGSGNSGMEIALDLANH----------------------AAKTSLVVRS 218 (294)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~v~VvG~G~~~~e~a~~l~~~----------------------~~~v~~~~r~ 218 (294)
.+|+..+.|.+-...+.. ...++..++++|||.|++|+|+|..|... -++|+++.|+
T Consensus 134 V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRR 213 (468)
T KOG1800|consen 134 VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRR 213 (468)
T ss_pred ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEecc
Confidence 223322333322222222 12445689999999999999999988642 2468999998
Q ss_pred c
Q 022626 219 P 219 (294)
Q Consensus 219 ~ 219 (294)
+
T Consensus 214 g 214 (468)
T KOG1800|consen 214 G 214 (468)
T ss_pred C
Confidence 8
No 80
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.65 E-value=8.4e-16 Score=145.46 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=34.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..++|+||||||||++||..|++.|++|++||+.+..|+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 468999999999999999999999999999999765443
No 81
>PRK09897 hypothetical protein; Provisional
Probab=99.65 E-value=6.1e-15 Score=134.29 Aligned_cols=191 Identities=15% Similarity=0.189 Sum_probs=117.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CCeEEEecCCCCC-CC-cCCCC-CCcEEEecC--------CccccCCCC------
Q 022626 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYA-SI-WKKYS-YDRLRLHLA--------KQFCQLPHL------ 68 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g--~~v~iie~~~~~g-g~-w~~~~-~~~~~~~~~--------~~~~~~~~~------ 68 (294)
++|+||||||+|+++|.+|.+.+ .+|+|||++..+| |. |.... ...+..+.+ ..+..+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999998864 5899999988777 42 44311 011111111 011111000
Q ss_pred ---C---CCCCCCCCCCHHHHHHHHHHHHHHc-------CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEE
Q 022626 69 ---P---FPSSYPMFVSRAQFIEHLDHYVSHF-------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (294)
Q Consensus 69 ---~---~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (294)
. ...+-..|+++..+.+|+++..+.+ +....++.+++|++++..+ +.|.|++.+++ ..
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg------~~- 152 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDL------PS- 152 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCC------eE-
Confidence 0 0001135777777777777655433 2234446788999998765 66888875431 45
Q ss_pred EeeCEEEEccCCCCCCCCCCCCCccccccCCCCCceEEeccCCCC--CCCCCCCeEEEEccCCcHHHHHHHHhhcc----
Q 022626 136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHA---- 209 (294)
Q Consensus 136 ~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~v~VvG~G~~~~e~a~~l~~~~---- 209 (294)
+.+|+||+|||+. .|..+ ++...| +. ..|.. .....+.+|+|+|.|.+++|++..|...+
T Consensus 153 i~aD~VVLAtGh~-~p~~~--~~~~~y----------i~-~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~ 218 (534)
T PRK09897 153 ETFDLAVIATGHV-WPDEE--EATRTY----------FP-SPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI 218 (534)
T ss_pred EEcCEEEECCCCC-CCCCC--hhhccc----------cC-CCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCcee
Confidence 7999999999962 22211 121111 11 11111 11223689999999999999999987552
Q ss_pred -----------------CeEEEEEccchh
Q 022626 210 -----------------AKTSLVVRSPMV 221 (294)
Q Consensus 210 -----------------~~v~~~~r~~~~ 221 (294)
.+++++.|++++
T Consensus 219 ~~~~~~~~l~y~~sg~~~~I~a~SRrGl~ 247 (534)
T PRK09897 219 EDDKQHVVFHRDNASEKLNITLMSRTGIL 247 (534)
T ss_pred ccCCCcceeeecCCCCCceEEEEeCCCCC
Confidence 368999999865
No 82
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.64 E-value=1.5e-15 Score=137.62 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=149.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (294)
+.+++|||.|++|..+..++++. -+++++|..++++. |....++.. ++.-.+.+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~v--------------l~~~~~~edi 61 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSSV--------------LAGEKTAEDI 61 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeeccc--------------cCCCccHHHH
Confidence 46999999999999999999984 46899999988754 544433211 0111234555
Q ss_pred HHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022626 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (294)
Q Consensus 84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~ 163 (294)
.-.-.++.+++++.. +.+..|+.+++.. ..|+++.+ .. +.||.||+||| |.|++|++||.+.+
T Consensus 62 ~l~~~dwy~~~~i~L--~~~~~v~~idr~~----k~V~t~~g-------~~-~~YDkLilATG--S~pfi~PiPG~~~~- 124 (793)
T COG1251 62 SLNRNDWYEENGITL--YTGEKVIQIDRAN----KVVTTDAG-------RT-VSYDKLIIATG--SYPFILPIPGSDLP- 124 (793)
T ss_pred hccchhhHHHcCcEE--EcCCeeEEeccCc----ceEEccCC-------cE-eecceeEEecC--ccccccCCCCCCCC-
Confidence 556667778888766 9999999996644 56888775 56 89999999999 99999999998754
Q ss_pred cCCCCCceEEeccCCCCCC-----CCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc-hh------hhhhHhhccC
Q 022626 164 SSATGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP-MV------YLGVVLFKYV 231 (294)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~~-----~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~-~~------~~~~~~~~~~ 231 (294)
.++....+.+.. ....++-+|||+|..|+|+|..|.+.|-++++++-.+ ++ ..+..|.+.+
T Consensus 125 -------~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~l 197 (793)
T COG1251 125 -------GVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKL 197 (793)
T ss_pred -------CeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHH
Confidence 345544444321 1124567999999999999999999999999999998 33 3455666678
Q ss_pred CHHHHHHHHHHHHHHHhcCc
Q 022626 232 PFGWVDTLMVMLSRLVYGDL 251 (294)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~ 251 (294)
+...+...+++.++++.++.
T Consensus 198 e~~Gi~~~l~~~t~ei~g~~ 217 (793)
T COG1251 198 EDLGIKVLLEKNTEEIVGED 217 (793)
T ss_pred HhhcceeecccchhhhhcCc
Confidence 88888888887777777633
No 83
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.61 E-value=4e-15 Score=138.22 Aligned_cols=159 Identities=21% Similarity=0.292 Sum_probs=106.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..++|+|||+||+||++|..|++.|++|+++|+.+.+||.+++. + +.|.-..++.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~ 191 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------I---------PAYRLPREVLD 191 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------C---------CCccCCHHHHH
Confidence 35799999999999999999999999999999999999876532 1 11111234444
Q ss_pred HHHHHHHHcCCCceeeeCcEE-EEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022626 86 HLDHYVSHFNIGPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~ 164 (294)
...+.+.++++.. .+++.+ ..+. .+. .. ..||.|++|+|.. .+..+.++|.+.
T Consensus 192 ~~l~~~~~~Gv~~--~~~~~~~~~~~-----------~~~--------~~-~~~D~Vi~AtG~~-~~~~~~i~g~~~--- 245 (564)
T PRK12771 192 AEIQRILDLGVEV--RLGVRVGEDIT-----------LEQ--------LE-GEFDAVFVAIGAQ-LGKRLPIPGEDA--- 245 (564)
T ss_pred HHHHHHHHCCCEE--EeCCEECCcCC-----------HHH--------HH-hhCCEEEEeeCCC-CCCcCCCCCCcc---
Confidence 4455666677654 666554 2211 111 12 3579999999952 233346666442
Q ss_pred CCCCCceEEeccCC-----CCCCCCCCCeEEEEccCCcHHHHHHHHhhcc-CeEEEEEccc
Q 022626 165 SATGTGEVIHSTQY-----KNGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP 219 (294)
Q Consensus 165 ~~~~~g~~~~~~~~-----~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~-~~v~~~~r~~ 219 (294)
.|.+ ....+ .......+++++|||+|++|+|++..+.+.+ .+|++++|.+
T Consensus 246 ----~gv~-~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 246 ----AGVL-DAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred ----CCcE-EHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 2322 11111 1112345799999999999999999888888 6799999885
No 84
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.58 E-value=9.8e-15 Score=130.25 Aligned_cols=157 Identities=22% Similarity=0.291 Sum_probs=113.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.++|+||||||+|+++|..|.+.|++|+++|+.+..||...+. .|.|-...++.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG------------------------IP~~kl~k~i~d~ 178 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG------------------------IPDFKLPKDILDR 178 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec------------------------CchhhccchHHHH
Confidence 3799999999999999999999999999999999999875543 1344444577788
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~ 166 (294)
..++.++.+++. +.++++- ..++.+.. . -.+|.|++|+|. ..|...++||.+.
T Consensus 179 ~i~~l~~~Gv~~--~~~~~vG----------~~it~~~L--------~-~e~Dav~l~~G~-~~~~~l~i~g~d~----- 231 (457)
T COG0493 179 RLELLERSGVEF--KLNVRVG----------RDITLEEL--------L-KEYDAVFLATGA-GKPRPLDIPGEDA----- 231 (457)
T ss_pred HHHHHHHcCeEE--EEcceEC----------CcCCHHHH--------H-HhhCEEEEeccc-cCCCCCCCCCcCC-----
Confidence 888888888554 7777662 02333332 1 245999999996 5777778888752
Q ss_pred CCCceEEeccC------------C--CCCCCCCCCeEEEEccCCcHHHHHHHHhhccC-eEEEEEc
Q 022626 167 TGTGEVIHSTQ------------Y--KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVR 217 (294)
Q Consensus 167 ~~~g~~~~~~~------------~--~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~-~v~~~~r 217 (294)
+|. ....+ + .......+++|+|||+|.+++|++....++|+ +|+.+.+
T Consensus 232 --~gv-~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~ 294 (457)
T COG0493 232 --KGV-AFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYR 294 (457)
T ss_pred --Ccc-hHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecc
Confidence 221 11111 1 11122245999999999999999999988887 7888853
No 85
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.55 E-value=8.4e-13 Score=115.50 Aligned_cols=197 Identities=19% Similarity=0.221 Sum_probs=123.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCC---CCeEEEecCCCCCCCcCCC-CCCcEEEecCCccccC--CCCC------------
Q 022626 8 VEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYASIWKKY-SYDRLRLHLAKQFCQL--PHLP------------ 69 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g---~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~~~~~--~~~~------------ 69 (294)
++|+|||+|++|+++|.+|.+.- ..+.|||+.+.+|.--.|. .-+..+++.+..-++. ++.|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 69999999999999999999872 2399999999887643332 2222333333222211 2211
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHHcCC----CceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEee
Q 022626 70 -------FPSSYPMFVSRAQFIEHLDHYVSHFNI----GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (294)
Q Consensus 70 -------~~~~~~~~~~~~~~~~~l~~~~~~~~l----~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 138 (294)
...+-+.|+++..+-+|+.++...+-- .......++.+++..++..+.|.+...++ .. ..|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g-------~~-~~a 153 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG-------PS-EIA 153 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC-------Ce-eee
Confidence 112234678899999999887765511 11124555667776665457787777775 34 689
Q ss_pred CEEEEccCCCCCCCCCCCCCccccccCCCCCceE-EeccCCC-CC--CCCCCCeEEEEccCCcHHHHHHHHhhccC--eE
Q 022626 139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEV-IHSTQYK-NG--KPYGGKNVLVVGSGNSGMEIALDLANHAA--KT 212 (294)
Q Consensus 139 d~vv~AtG~~~~p~~p~i~g~~~~~~~~~~~g~~-~~~~~~~-~~--~~~~~~~v~VvG~G~~~~e~a~~l~~~~~--~v 212 (294)
|.+|+|||+.. |..+.. ...+ .+.. +....|. +. ......+|+|+|+|.+-+|....|.++|. +|
T Consensus 154 d~~Vlatgh~~-~~~~~~--~~~~------~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~I 224 (474)
T COG4529 154 DIIVLATGHSA-PPADPA--ARDL------KGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPI 224 (474)
T ss_pred eEEEEeccCCC-CCcchh--hhcc------CCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccce
Confidence 99999999632 222221 1111 1111 1111111 11 12234679999999999999999999875 69
Q ss_pred EEEEccchh
Q 022626 213 SLVVRSPMV 221 (294)
Q Consensus 213 ~~~~r~~~~ 221 (294)
|++.|++++
T Consensus 225 t~iSRrGl~ 233 (474)
T COG4529 225 TAISRRGLV 233 (474)
T ss_pred EEEeccccc
Confidence 999999844
No 86
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.51 E-value=3.4e-13 Score=115.23 Aligned_cols=135 Identities=15% Similarity=0.217 Sum_probs=93.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC--------CcCCC---CCCcEEEecC---Cccc----cCC-
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKKY---SYDRLRLHLA---KQFC----QLP- 66 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg--------~w~~~---~~~~~~~~~~---~~~~----~~~- 66 (294)
+.+||+||||||||++||..+.+.|.+|+|||+.+.+|- -++.. .+.....+.| +.+. .|.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 357999999999999999999999999999999996662 22211 0111111111 0000 000
Q ss_pred ----------CCCCCCC-----CCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCce
Q 022626 67 ----------HLPFPSS-----YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (294)
Q Consensus 67 ----------~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (294)
..++.+. +|.-....++.+.+...+++.+++. +.+++|.+++.++ ..+.+.+.++
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i--~~~~~v~~v~~~~--~~f~l~t~~g------ 151 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTI--RTRSRVSSVEKDD--SGFRLDTSSG------ 151 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEE--EecceEEeEEecC--ceEEEEcCCC------
Confidence 0000000 1222356788888999999999887 9999999998876 6788888775
Q ss_pred eEEEEeeCEEEEccCCCCCCC
Q 022626 132 IEEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 132 ~~~~~~~d~vv~AtG~~~~p~ 152 (294)
.+ +.+|.+|+|||..|.|.
T Consensus 152 -~~-i~~d~lilAtGG~S~P~ 170 (408)
T COG2081 152 -ET-VKCDSLILATGGKSWPK 170 (408)
T ss_pred -CE-EEccEEEEecCCcCCCC
Confidence 47 89999999999766664
No 87
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.50 E-value=3.6e-13 Score=121.38 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=99.9
Q ss_pred HHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCC-CCHHHHHHH-HHHHHHHcCC
Q 022626 21 ATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMF-VSRAQFIEH-LDHYVSHFNI 96 (294)
Q Consensus 21 ~aA~~L~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~l 96 (294)
+||..|++. .++|+|||+++...-. .+..+. -..+. ...+++..+ .+++.+++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~---------~~~l~~------------~~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFA---------NCGLPY------------VIGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEE---------cCCCCe------------EeccccCCHHHcccCCHHHHHHhcCC
Confidence 478888876 4689999999853210 000000 00011 112233333 2345577777
Q ss_pred CceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEe--eCEEEEccCCCCCCCCCCCCCccccccCCCCCceEEe
Q 022626 97 GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS--GRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIH 174 (294)
Q Consensus 97 ~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~vv~AtG~~~~p~~p~i~g~~~~~~~~~~~g~~~~ 174 (294)
+. +++++|++++.++ +.|.+.+.+++ .+ +. ||+||+||| ++|..|++||.+. . .+++
T Consensus 60 ~~--~~~~~V~~id~~~----~~v~~~~~~~~----~~-~~~~yd~lIiATG--~~p~~~~i~G~~~-------~-~v~~ 118 (427)
T TIGR03385 60 DV--KTNHEVIEVNDER----QTVVVRNNKTN----ET-YEESYDYLILSPG--ASPIVPNIEGINL-------D-IVFT 118 (427)
T ss_pred eE--EecCEEEEEECCC----CEEEEEECCCC----CE-EecCCCEEEECCC--CCCCCCCCCCcCC-------C-CEEE
Confidence 65 7889999987543 34555432211 35 66 999999999 8888889998652 1 1232
Q ss_pred ccCCCCC-------CCCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 175 STQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 175 ~~~~~~~-------~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.....+. ....+++++|||+|.+|+|+|..|.+.|.+|+++++++
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 119 LRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred ECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 2222111 11346899999999999999999999999999999884
No 88
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.49 E-value=6.2e-13 Score=102.83 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=90.8
Q ss_pred EEECCChHHHHHHHHHHhC-----CCCeEEEecCCCC-CCCcCCCCCCcEEEecCCccccC-CCCC--------------
Q 022626 11 IMVGAGTSGLATAACLSLQ-----SIPYVILERENCY-ASIWKKYSYDRLRLHLAKQFCQL-PHLP-------------- 69 (294)
Q Consensus 11 vIIGaG~aGl~aA~~L~~~-----g~~v~iie~~~~~-gg~w~~~~~~~~~~~~~~~~~~~-~~~~-------------- 69 (294)
+|||+|++|++++.+|.++ ..+|+|||+++.. |+.|.....+...+|.+...+.. ++.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999988 4589999997764 45777654555666666544433 2211
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHc------CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEE
Q 022626 70 --FPSSYPMFVSRAQFIEHLDHYVSHF------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (294)
Q Consensus 70 --~~~~~~~~~~~~~~~~~l~~~~~~~------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~v 141 (294)
.......|+++..+.+|++++.+.. ++... +...+|+++...+ +.|.|.+.++ .. +.||.|
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~-~~~~~V~~i~~~~--~~~~v~~~~g-------~~-~~~d~V 149 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVR-HVRAEVVDIRRDD--DGYRVVTADG-------QS-IRADAV 149 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEE-EEeeEEEEEEEcC--CcEEEEECCC-------CE-EEeCEE
Confidence 0112247899999999999988764 22222 3566888988866 6688888775 46 799999
Q ss_pred EEccCC
Q 022626 142 VVASGE 147 (294)
Q Consensus 142 v~AtG~ 147 (294)
|+|||+
T Consensus 150 vLa~Gh 155 (156)
T PF13454_consen 150 VLATGH 155 (156)
T ss_pred EECCCC
Confidence 999995
No 89
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.49 E-value=2.4e-13 Score=116.33 Aligned_cols=202 Identities=18% Similarity=0.161 Sum_probs=127.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHH
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (294)
..+++|||+|+|-+|.+++..|-..-++|+|++.++++-=+|.. |...-+-.....+.
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLL----------------------pS~~vGTve~rSIv 110 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL----------------------PSTTVGTVELRSIV 110 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeecc----------------------CCccccceeehhhh
Confidence 35689999999999999999999999999999987753322211 11111223344666
Q ss_pred HHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCC-ceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022626 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG-REIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (294)
Q Consensus 85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~ 163 (294)
+-+...+.+-....+ .+..+...++.+. ..|+++....++ ..+.. +.||+||+|+| ..++.+.+||..+.|
T Consensus 111 EPIr~i~r~k~~~~~-y~eAec~~iDp~~----k~V~~~s~t~~~~~~e~~-i~YDyLViA~G--A~~~TFgipGV~e~~ 182 (491)
T KOG2495|consen 111 EPIRAIARKKNGEVK-YLEAECTKIDPDN----KKVHCRSLTADSSDKEFV-IGYDYLVIAVG--AEPNTFGIPGVEENA 182 (491)
T ss_pred hhHHHHhhccCCCce-EEecccEeecccc----cEEEEeeeccCCCcceee-ecccEEEEecc--CCCCCCCCCchhhch
Confidence 666666665533332 5556667775443 345544322111 13356 89999999999 888888999986531
Q ss_pred cCCCCCceEEeccCC----------------CCCCCCCCCeEEEEccCCcHHHHHHHHhhcc--------------CeEE
Q 022626 164 SSATGTGEVIHSTQY----------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHA--------------AKTS 213 (294)
Q Consensus 164 ~~~~~~g~~~~~~~~----------------~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~--------------~~v~ 213 (294)
. |.-.+-+..+. .+++..+--+++|||||.+|+|+|.+|+..- -+||
T Consensus 183 ~---FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vt 259 (491)
T KOG2495|consen 183 H---FLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVT 259 (491)
T ss_pred h---hhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEE
Confidence 0 01111121111 1111122347999999999999999998752 2455
Q ss_pred EEEccchhhhhhHhhccCCHHHHHHHHHHHHH
Q 022626 214 LVVRSPMVYLGVVLFKYVPFGWVDTLMVMLSR 245 (294)
Q Consensus 214 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (294)
++. +.+.+++++..++++...+++.+
T Consensus 260 LiE------A~d~iL~mFdkrl~~yae~~f~~ 285 (491)
T KOG2495|consen 260 LIE------AADHILNMFDKRLVEYAENQFVR 285 (491)
T ss_pred eec------cchhHHHHHHHHHHHHHHHHhhh
Confidence 554 44667777888888877776554
No 90
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.45 E-value=2.9e-13 Score=119.79 Aligned_cols=134 Identities=19% Similarity=0.294 Sum_probs=74.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC------CcCCC------CCCcEEEe---cCCccc----cCC--
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKKY------SYDRLRLH---LAKQFC----QLP-- 66 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg------~w~~~------~~~~~~~~---~~~~~~----~~~-- 66 (294)
|||+|||||||||+||..|++.|.+|+|+||++.+|- ..+.+ ........ .+..+. .++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 6899999999999999999999999999999997762 11111 00011111 000000 000
Q ss_pred ---------CCCCC--CC---CCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCcee
Q 022626 67 ---------HLPFP--SS---YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (294)
Q Consensus 67 ---------~~~~~--~~---~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (294)
..+.. ++ +|.--...++.+.+.+.+++.+++. +++++|.++..++ ++.|.|.+++.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i--~~~~~V~~i~~~~-~~~f~v~~~~~------- 150 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEI--HFNTRVKSIEKKE-DGVFGVKTKNG------- 150 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EE--E-S--EEEEEEET-TEEEEEEETTT-------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEE--EeCCEeeeeeecC-CceeEeeccCc-------
Confidence 00000 00 1112256788889999999988877 9999999998766 34588888432
Q ss_pred EEEEeeCEEEEccCCCCCCC
Q 022626 133 EEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 133 ~~~~~~d~vv~AtG~~~~p~ 152 (294)
.. +.+|.||+|||..+.|.
T Consensus 151 ~~-~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 151 GE-YEADAVILATGGKSYPK 169 (409)
T ss_dssp EE-EEESEEEE----SSSGG
T ss_pred cc-ccCCEEEEecCCCCccc
Confidence 57 89999999999766554
No 91
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.40 E-value=3.9e-12 Score=108.79 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=85.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCC-----Cc--------------EEEecC-CccccCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSY-----DR--------------LRLHLA-KQFCQLPH 67 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~-----~~--------------~~~~~~-~~~~~~~~ 67 (294)
+||+|||||++|+++|..|++.|++|+|+|+.+..+..|..... .. ...... .... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSV---E 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEE---E
Confidence 58999999999999999999999999999999876543321100 00 000000 0000 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCC
Q 022626 68 LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (294)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~ 147 (294)
.+.+.......++..+.+.+.+.+.+.+++. +++++|+.+..++ +.+.+.+.++ ..+ +++|+||+|+|.
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~--~~~~~v~~~~~~~--~~~~~~~~~~------~~~-~~a~~vv~a~G~ 146 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAEL--RLGTTVLDVEIHD--DRVVVIVRGG------EGT-VTAKIVIGADGS 146 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEE--EeCcEEeeEEEeC--CEEEEEEcCc------cEE-EEeCEEEECCCc
Confidence 1111111223578899999999998887766 8999999987765 4455554431 156 899999999996
Q ss_pred CC
Q 022626 148 TT 149 (294)
Q Consensus 148 ~~ 149 (294)
++
T Consensus 147 ~s 148 (295)
T TIGR02032 147 RS 148 (295)
T ss_pred ch
Confidence 54
No 92
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.39 E-value=9.3e-12 Score=110.82 Aligned_cols=136 Identities=17% Similarity=0.173 Sum_probs=84.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecC-CC---CCCCcCC--------------CCCCcEEEecCCccccCCCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC---YASIWKK--------------YSYDRLRLHLAKQFCQLPHLP 69 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~-~~---~gg~w~~--------------~~~~~~~~~~~~~~~~~~~~~ 69 (294)
+||+||||||+|+++|..|++.|++|+++|+. +. .|+.... ..+....+..+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 68999999999999999999999999999997 21 1221110 011122222222100000111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCC-CCceeEEEEeeCEEEEccCCC
Q 022626 70 FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS-PGREIEEYYSGRFLVVASGET 148 (294)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~vv~AtG~~ 148 (294)
.+..+....++..+.+++.+.+.+.+.+. +. ++|+++..++ +.+.|++.++.. .+++..+ +.+|.||.|+|..
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v--~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~~~~~-i~a~~VI~AdG~~ 154 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAEL--IH-GLFLKLERDR--DGVTLTYRTPKKGAGGEKGS-VEADVVIGADGAN 154 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEE--Ee-eEEEEEEEcC--CeEEEEEEeccccCCCcceE-EEeCEEEECCCCC
Confidence 11111123689999999999999888765 44 4688887654 567777664210 0002256 8999999999976
Q ss_pred C
Q 022626 149 T 149 (294)
Q Consensus 149 ~ 149 (294)
|
T Consensus 155 S 155 (388)
T TIGR02023 155 S 155 (388)
T ss_pred c
Confidence 5
No 93
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.37 E-value=8.1e-12 Score=104.35 Aligned_cols=138 Identities=17% Similarity=0.205 Sum_probs=87.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCC-CCcEEEecC-CccccCCCCCCCCCCC--CCCCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYS-YDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg-~w~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~ 81 (294)
.+||+||||||+|++||..|++.|++|+++|+++.+|| .|.... ++...+... ..+..--..++..... ...++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 57999999999999999999999999999999988765 554321 111111100 0000001112111111 124678
Q ss_pred HHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEec------cCCCCceeEEEEeeCEEEEccCCCC
Q 022626 82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN------LLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 82 ~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~------~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
++...+.+.+.+.++.. +++++|+++..+++...+-+.... +... ...+ +.++.||+|||+.+
T Consensus 105 ~l~~~L~~~A~~~Gv~I--~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~--~~~~-i~Ak~VI~ATG~~a 173 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKI--FNGVSVEDVILREDPRVAGVVINWTPVEMAGLHV--DPLT-IEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHcCCEE--EcCceeceeeEeCCCcEEEEEEccccccccCCCC--CcEE-EEcCEEEEEeCCCc
Confidence 88888998898888766 889999998765422223333221 1000 1257 89999999999755
No 94
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.36 E-value=1.2e-11 Score=103.00 Aligned_cols=139 Identities=22% Similarity=0.243 Sum_probs=88.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC-CCcCCCC-CCcEEEecC-CccccCCCCCCCCCCCC--CCCH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKYS-YDRLRLHLA-KQFCQLPHLPFPSSYPM--FVSR 80 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g-g~w~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~ 80 (294)
..+||+||||||+|++||..|++.|++|+|+||+..+| ++|.... ++...+..+ ..+......++...-.. ..++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 35899999999999999999999999999999999875 4665431 221111111 11111112222211111 2366
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCC-CcEEEEEec------cCCCCceeEEEEeeCEEEEccCCCC
Q 022626 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASN------LLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~-~~~~v~~~~------~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
.++...+.+.+.+.+++. ++++.|+++..+++. ...-|.+.. +... .+.+ +.++.||.|||+.+
T Consensus 100 ~el~~~L~~~a~e~GV~I--~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~--d~~~-i~Ak~VVdATG~~a 170 (254)
T TIGR00292 100 AEFISTLASKALQAGAKI--FNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHV--DPLT-QRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeCCCCceEEEEeCCccccccCCCC--CCEE-EEcCEEEEeecCCc
Confidence 788999999998888766 899999998775532 112233321 1000 1257 89999999999643
No 95
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.36 E-value=2.5e-12 Score=120.77 Aligned_cols=152 Identities=20% Similarity=0.279 Sum_probs=103.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.++|+|||+||+||+||..|-+.|+.|+++||.+.+||+..+. .|.+. ....+.+.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg-ipnmk-----------------------ldk~vv~r 1840 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG-IPNMK-----------------------LDKFVVQR 1840 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec-CCccc-----------------------hhHHHHHH
Confidence 4799999999999999999999999999999999999986644 22221 11234444
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~ 166 (294)
-.+...+-|++. ..|+++- . .+..+.. . -..|.+|+|+|. ..|+-.++||.+.
T Consensus 1841 rv~ll~~egi~f--~tn~eig---------k-~vs~d~l--------~-~~~daiv~a~gs-t~prdlpv~grd~----- 1893 (2142)
T KOG0399|consen 1841 RVDLLEQEGIRF--VTNTEIG---------K-HVSLDEL--------K-KENDAIVLATGS-TTPRDLPVPGRDL----- 1893 (2142)
T ss_pred HHHHHHhhCceE--Eeecccc---------c-cccHHHH--------h-hccCeEEEEeCC-CCCcCCCCCCccc-----
Confidence 444555567666 6665551 1 1333221 1 246899999995 5788788888763
Q ss_pred CCCceE-----EeccC--C------CCCCCCCCCeEEEEccCCcHHHHHHHHhhccCe
Q 022626 167 TGTGEV-----IHSTQ--Y------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (294)
Q Consensus 167 ~~~g~~-----~~~~~--~------~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~~~ 211 (294)
+|.. +|... . ..-...++|+|+|||+|-+|.|+...-.++|.+
T Consensus 1894 --kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1894 --KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred --cccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccc
Confidence 2211 11110 0 011234689999999999999999988888764
No 96
>PRK06847 hypothetical protein; Provisional
Probab=99.35 E-value=3.7e-11 Score=106.48 Aligned_cols=133 Identities=18% Similarity=0.187 Sum_probs=87.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC----cCC--------------------CCCCcEEEecC--C
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI----WKK--------------------YSYDRLRLHLA--K 60 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~----w~~--------------------~~~~~~~~~~~--~ 60 (294)
+++|+|||||++|+++|..|++.|++|+|+|+.+.+... .-. .......+..+ .
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 579999999999999999999999999999998743210 000 00111111111 1
Q ss_pred ccccCCCCCC-CCCC--CCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEe
Q 022626 61 QFCQLPHLPF-PSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (294)
Q Consensus 61 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (294)
....++.... ...+ .....+.++.+++.+.+.+.++.. +++++|++++.++ +.+.+.+.++ .+ +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~ 151 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADV--RLGTTVTAIEQDD--DGVTVTFSDG-------TT-GR 151 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEE--EeCCEEEEEEEcC--CEEEEEEcCC-------CE-EE
Confidence 1111110000 0011 123577899999999988877665 9999999997754 5677777654 46 89
Q ss_pred eCEEEEccCCCCCC
Q 022626 138 GRFLVVASGETTNP 151 (294)
Q Consensus 138 ~d~vv~AtG~~~~p 151 (294)
+|.||.|+|.++..
T Consensus 152 ad~vI~AdG~~s~~ 165 (375)
T PRK06847 152 YDLVVGADGLYSKV 165 (375)
T ss_pred cCEEEECcCCCcch
Confidence 99999999976643
No 97
>PRK08244 hypothetical protein; Provisional
Probab=99.35 E-value=3.9e-11 Score=110.16 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=84.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC-------------------CcCC-----CCCCcEEEecCCcc
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------------------IWKK-----YSYDRLRLHLAKQF 62 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg-------------------~w~~-----~~~~~~~~~~~~~~ 62 (294)
.++|+||||||+|+++|..|++.|++|+|+||.+.... .|.. ..+...........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 47999999999999999999999999999999874321 0000 00111111100000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEE
Q 022626 63 CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (294)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv 142 (294)
..+...+.+..+....++..+.+.+.+.+++.+++. ++++++++++.++ +...+++.+.++ ..+ +++|+||
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~~~g----~~~-i~a~~vV 152 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEI--FRGAEVLAVRQDG--DGVEVVVRGPDG----LRT-LTSSYVV 152 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeE--EeCCEEEEEEEcC--CeEEEEEEeCCc----cEE-EEeCEEE
Confidence 011111111111122467788888988888877665 9999999997765 456666653221 146 8999999
Q ss_pred EccCCCC
Q 022626 143 VASGETT 149 (294)
Q Consensus 143 ~AtG~~~ 149 (294)
.|+|..|
T Consensus 153 gADG~~S 159 (493)
T PRK08244 153 GADGAGS 159 (493)
T ss_pred ECCCCCh
Confidence 9999766
No 98
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.35 E-value=3.1e-11 Score=108.62 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=83.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC-------cCCC---CCCcE---------EE------ecCCc
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-------WKKY---SYDRL---------RL------HLAKQ 61 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~-------w~~~---~~~~~---------~~------~~~~~ 61 (294)
.+||+||||||+|++||..|++.|++|+|+||.+.++.. +... .++.+ .. .....
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 589999999999999999999999999999998765531 1000 00000 00 00000
Q ss_pred cc--cCCCCCCC-CCCCCC-CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEe
Q 022626 62 FC--QLPHLPFP-SSYPMF-VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (294)
Q Consensus 62 ~~--~~~~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (294)
.. .+...... .....| ..+.++.+++.+.+++.++.. +.+++|+++..++ +.+.+...++ .+ +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--g~v~~v~~~g-------~~-i~ 152 (428)
T PRK10157 85 AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL--ITGIRVDNLVQRD--GKVVGVEADG-------DV-IE 152 (428)
T ss_pred ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEeC--CEEEEEEcCC-------cE-EE
Confidence 00 00000000 001112 478899999999999888776 8899999987654 4443332222 46 89
Q ss_pred eCEEEEccCCCC
Q 022626 138 GRFLVVASGETT 149 (294)
Q Consensus 138 ~d~vv~AtG~~~ 149 (294)
++.||+|+|..+
T Consensus 153 A~~VI~A~G~~s 164 (428)
T PRK10157 153 AKTVILADGVNS 164 (428)
T ss_pred CCEEEEEeCCCH
Confidence 999999999644
No 99
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.34 E-value=1.6e-13 Score=110.73 Aligned_cols=152 Identities=20% Similarity=0.242 Sum_probs=85.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH---
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE--- 85 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (294)
||+|||||+||++||..|++.+.+++++|+.+....... ..+..... ........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~---------~~~~~~~~----------~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSG---------CIPSPLLV----------EIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHS---------HHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccc---------cccccccc----------cccccccccccccc
Confidence 799999999999999999999999999988764221000 00000000 00000001111
Q ss_pred -HHHHHHHHcCCCceeeeCcEEEEEEEcCCC---CcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022626 86 -HLDHYVSHFNIGPSIRYQRSVESASYDEAT---NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS 161 (294)
Q Consensus 86 -~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~ 161 (294)
.+.+.+.+.+++. ++++++.+++..... ..+.+...... .... +.||+||+||| +.|..|.+||.+.
T Consensus 62 ~~~~~~~~~~~v~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~----~~~~-~~~d~lviAtG--~~~~~~~i~g~~~ 132 (201)
T PF07992_consen 62 FKLVDQLKNRGVEI--RLNAKVVSIDPESKRVVCPAVTIQVVETG----DGRE-IKYDYLVIATG--SRPRTPNIPGEEV 132 (201)
T ss_dssp GHHHHHHHHHTHEE--EHHHTEEEEEESTTEEEETCEEEEEEETT----TEEE-EEEEEEEEEST--EEEEEESSTTTTT
T ss_pred cccccccccceEEE--eeccccccccccccccccCcccceeeccC----CceE-ecCCeeeecCc--cccceeecCCCcc
Confidence 1222223445444 678889999776521 12233322211 1267 89999999999 8888889998631
Q ss_pred cccCCCCCceEEeccCCCCCCCCCCCeEEEEc
Q 022626 162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG 193 (294)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG 193 (294)
.. +...+.++..+.. ....+++++|||
T Consensus 133 ~~----~~~~~~~~~~~~~-~~~~~~~v~VvG 159 (201)
T PF07992_consen 133 AY----FLRGVDDAQRFLE-LLESPKRVAVVG 159 (201)
T ss_dssp EC----BTTSEEHHHHHHT-HSSTTSEEEEES
T ss_pred cc----ccccccccccccc-cccccccccccc
Confidence 10 0122333333333 222245999999
No 100
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.33 E-value=9.9e-12 Score=108.95 Aligned_cols=134 Identities=21% Similarity=0.205 Sum_probs=83.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC-----------------------C---CCCcEEEecC--
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-----------------------Y---SYDRLRLHLA-- 59 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~-----------------------~---~~~~~~~~~~-- 59 (294)
+||+||||||+|+++|..|++.|++|+||||.+........ . ..........
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 58999999999999999999999999999998754321110 0 0000111111
Q ss_pred ---------CccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCc
Q 022626 60 ---------KQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (294)
Q Consensus 60 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (294)
.....+. ...+........+..+.+.|.+.+++.++.. +++++++++..+. +...+.+.....+
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i--~~~~~v~~~~~d~--~~~~~~~~~~~~g-- 154 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDI--RFGTRVVSIEQDD--DGVTVVVRDGEDG-- 154 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEE--EESEEEEEEEEET--TEEEEEEEETCTC--
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhh--eeeeecccccccc--cccccccccccCC--
Confidence 0001111 0000111122478899999999999988555 9999999998776 4455555444322
Q ss_pred eeEEEEeeCEEEEccCCCC
Q 022626 131 EIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 131 ~~~~~~~~d~vv~AtG~~~ 149 (294)
..++ +++|.||.|+|.+|
T Consensus 155 ~~~~-i~adlvVgADG~~S 172 (356)
T PF01494_consen 155 EEET-IEADLVVGADGAHS 172 (356)
T ss_dssp EEEE-EEESEEEE-SGTT-
T ss_pred ceeE-EEEeeeecccCccc
Confidence 3357 89999999999766
No 101
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.33 E-value=7.3e-11 Score=109.41 Aligned_cols=138 Identities=19% Similarity=0.266 Sum_probs=88.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC------------------------CCCcEEEecC-
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------------------------SYDRLRLHLA- 59 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~------------------------~~~~~~~~~~- 59 (294)
...++|+||||||+|+++|..|++.|++|+|+||.+.+....+.. ..........
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 346899999999999999999999999999999997554211110 0111222111
Q ss_pred -CccccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEE
Q 022626 60 -KQFCQLPH-LPFPSSYP--MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (294)
Q Consensus 60 -~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (294)
.....+.. ...+..++ ...++..+.+++.+.+.++ ++.. +++++|++++.++ +.+.+++++.++ ++.+
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v--~~g~~v~~i~~~~--~~v~v~~~~~~G---~~~~ 160 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRV--RFGHEVTALTQDD--DGVTVTLTDADG---QRET 160 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEE--EcCCEEEEEEEcC--CeEEEEEEcCCC---CEEE
Confidence 11111111 00001111 2246677888888887765 5554 9999999998766 557777764221 2257
Q ss_pred EEeeCEEEEccCCCCC
Q 022626 135 YYSGRFLVVASGETTN 150 (294)
Q Consensus 135 ~~~~d~vv~AtG~~~~ 150 (294)
+++|+||.|+|.+|.
T Consensus 161 -i~ad~vVgADG~~S~ 175 (538)
T PRK06183 161 -VRARYVVGCDGANSF 175 (538)
T ss_pred -EEEEEEEecCCCchh
Confidence 899999999997663
No 102
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.4e-11 Score=96.87 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=88.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC-CCcCCCC-CCcEEEecCCc-cccCCCCCCCCCCCCC--CCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKYS-YDRLRLHLAKQ-FCQLPHLPFPSSYPMF--VSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g-g~w~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 81 (294)
..||+|+|||||||+||++|++.|++|+||||+..+| |.|...+ ++.+....+.. +..--..++.+.-..+ .+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 3599999999999999999999999999999998775 5887653 44444444321 1111122222221222 3666
Q ss_pred HHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCC------cEEEEEeccCCCCceeEEEEeeCEEEEccCCC
Q 022626 82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN------MWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (294)
Q Consensus 82 ~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~ 148 (294)
++..-+...+-+.+... ...+.|+++-..++.+ .|+.....+... .+.. +++++||-||||-
T Consensus 110 e~~skl~~~a~~aGaki--~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhv--DPl~-i~a~~VvDaTGHd 177 (262)
T COG1635 110 EFASKLAARALDAGAKI--FNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHV--DPLT-IRAKAVVDATGHD 177 (262)
T ss_pred HHHHHHHHHHHhcCcee--eecceEEEEEEecCCceEEEEEecchhhhccccc--Ccce-eeEEEEEeCCCCc
Confidence 77777777777777665 7777888886655322 133222221111 2256 8999999999963
No 103
>PRK08013 oxidoreductase; Provisional
Probab=99.32 E-value=2.9e-11 Score=108.05 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=84.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC---C----------------------CcCCC------CCCcEE
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---S----------------------IWKKY------SYDRLR 55 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g---g----------------------~w~~~------~~~~~~ 55 (294)
.+||+||||||+|+++|..|++.|++|+|+|+.+... | .|..- .+..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 4799999999999999999999999999999987522 1 11110 011111
Q ss_pred EecCCccc--cCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCce
Q 022626 56 LHLAKQFC--QLPHLPFPSSY-PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (294)
Q Consensus 56 ~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (294)
+..+.... .+......... ....++..+.+.+.+.+... ++.. +++++|++++.++ +.+.+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~v~v~~~~g------ 152 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITL--LAPAELQQVAWGE--NEAFLTLKDG------ 152 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeEEEEEcCC------
Confidence 11111000 01100000000 01246788888888888775 4444 8999999997765 4567777654
Q ss_pred eEEEEeeCEEEEccCCCCC
Q 022626 132 IEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 132 ~~~~~~~d~vv~AtG~~~~ 150 (294)
++ +++|.||.|+|.+|.
T Consensus 153 -~~-i~a~lvVgADG~~S~ 169 (400)
T PRK08013 153 -SM-LTARLVVGADGANSW 169 (400)
T ss_pred -CE-EEeeEEEEeCCCCcH
Confidence 56 899999999997663
No 104
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.32 E-value=2.8e-11 Score=107.92 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=87.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--CCCC--------cEE----EecCCccccCCCC---
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--YSYD--------RLR----LHLAKQFCQLPHL--- 68 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~--~~~~--------~~~----~~~~~~~~~~~~~--- 68 (294)
..+||+||||||||++||+.|++.|++|+++||.+.+|.--.. ..++ ... .........++..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 3589999999999999999999999999999999877742111 0000 000 0000000000000
Q ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCC
Q 022626 69 -PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (294)
Q Consensus 69 -~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~ 147 (294)
..+.......++..+.++|.+.+++.|.+. +.++++..+..++ +.+.+....++ .+ +.+++||.|+|.
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~--~~~~~~~~~~~~~--~~~~~~~~~~~------~e-~~a~~vI~AdG~ 150 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAEL--YPGTRVTGVIRED--DGVVVGVRAGD------DE-VRAKVVIDADGV 150 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEE--EeceEEEEEEEeC--CcEEEEEEcCC------EE-EEcCEEEECCCc
Confidence 000000112478999999999999999888 9999999998766 44444444321 46 899999999995
Q ss_pred CC
Q 022626 148 TT 149 (294)
Q Consensus 148 ~~ 149 (294)
.+
T Consensus 151 ~s 152 (396)
T COG0644 151 NS 152 (396)
T ss_pred ch
Confidence 43
No 105
>PRK06834 hypothetical protein; Provisional
Probab=99.30 E-value=8.4e-11 Score=107.38 Aligned_cols=131 Identities=20% Similarity=0.290 Sum_probs=84.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC--C-----CcCC--------CCCCcEE-----Ee---cCCccc
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S-----IWKK--------YSYDRLR-----LH---LAKQFC 63 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g--g-----~w~~--------~~~~~~~-----~~---~~~~~~ 63 (294)
.++|+||||||+|+++|..|++.|++|+|+|+.+... + .+.. ..++.+. .. ......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4799999999999999999999999999999986421 1 1110 0000000 00 000000
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEE
Q 022626 64 QLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (294)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~ 143 (294)
.+...+....+.....+..+.+.+.+.+++.++.. +++++|++++.++ +.+.+++.++ .+ +.+|+||.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~v~~~~--~~v~v~~~~g-------~~-i~a~~vVg 150 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPI--YRGREVTGFAQDD--TGVDVELSDG-------RT-LRAQYLVG 150 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CeEEEEECCC-------CE-EEeCEEEE
Confidence 11111111111122456788888888888887655 9999999998765 5677776543 46 89999999
Q ss_pred ccCCCC
Q 022626 144 ASGETT 149 (294)
Q Consensus 144 AtG~~~ 149 (294)
|+|.+|
T Consensus 151 ADG~~S 156 (488)
T PRK06834 151 CDGGRS 156 (488)
T ss_pred ecCCCC
Confidence 999766
No 106
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.30 E-value=5.6e-11 Score=105.86 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=83.7
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCc----EEE-----ecCCcc--ccCCCCCCCCCCCC-
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDR----LRL-----HLAKQF--CQLPHLPFPSSYPM- 76 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~----~~~-----~~~~~~--~~~~~~~~~~~~~~- 76 (294)
||+||||||+|+++|..|++.|++|+|+|+.+..++.+....+.. +.+ +.-... ..++..+.....+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 699999999999999999999999999999987765322221110 100 000000 00011100001111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
..++..+.+++.+.+.+.++. .+.++|+.+..+. .+.|.|+++++ .+ ++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~---~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVL---WLERKAIHAEADG-VALSTVYCAGG-------QR-IQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcE---EEccEEEEEEecC-CceeEEEeCCC-------CE-EEeCEEEECCCCch
Confidence 257889999999988887764 3466788876652 35688887653 46 89999999999755
No 107
>PRK06184 hypothetical protein; Provisional
Probab=99.30 E-value=1.3e-10 Score=106.97 Aligned_cols=134 Identities=19% Similarity=0.307 Sum_probs=84.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC------CcCC------------------CCCCcEEEecC-Cc
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK------------------YSYDRLRLHLA-KQ 61 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg------~w~~------------------~~~~~~~~~~~-~~ 61 (294)
.++|+||||||+|+++|..|++.|++|+|+||.+.+.. ++.. ..++....... ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 47999999999999999999999999999999875421 1100 00111111111 10
Q ss_pred cccCCCC----CCC-CCC--CCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEE
Q 022626 62 FCQLPHL----PFP-SSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (294)
Q Consensus 62 ~~~~~~~----~~~-~~~--~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (294)
....... +.+ ..+ ....++..+.+.+.+.+.+.+++. +++++|++++.++ +.+.+++...+.+ ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~~~~~----~~ 154 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRV--EFGCELVGFEQDA--DGVTARVAGPAGE----ET 154 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEE--EeCcEEEEEEEcC--CcEEEEEEeCCCe----EE
Confidence 1000000 000 000 112356777888888888877655 9999999998765 4566666432221 57
Q ss_pred EEeeCEEEEccCCCC
Q 022626 135 YYSGRFLVVASGETT 149 (294)
Q Consensus 135 ~~~~d~vv~AtG~~~ 149 (294)
+.+|+||.|+|.+|
T Consensus 155 -i~a~~vVgADG~~S 168 (502)
T PRK06184 155 -VRARYLVGADGGRS 168 (502)
T ss_pred -EEeCEEEECCCCch
Confidence 89999999999766
No 108
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.30 E-value=6.9e-11 Score=106.23 Aligned_cols=136 Identities=20% Similarity=0.292 Sum_probs=82.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC----C-----------------CcCC-----CCCCcEEEecC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S-----------------IWKK-----YSYDRLRLHLA 59 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g----g-----------------~w~~-----~~~~~~~~~~~ 59 (294)
..+||+||||||+|+++|..|++.|++|+|+|+.+... | .|.. .....+.+...
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 46899999999999999999999999999999987542 1 1110 00011111110
Q ss_pred C--ccccCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEE
Q 022626 60 K--QFCQLPHLPFPSSYPMF-VSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (294)
Q Consensus 60 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (294)
. ....+...........+ ..+..+.+.+.+.+.+. ++.. +++++|++++.++ +.+.|++.+++. +.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i--~~~~~v~~v~~~~--~~~~v~~~~~~~----~~~- 167 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITW--LCPAEVVSVEYQQ--DAATVTLEIEGK----QQT- 167 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeeEEEEccCCc----ceE-
Confidence 0 00111111111111111 23346777777766665 4444 8899999997655 567777764321 146
Q ss_pred EeeCEEEEccCCCCC
Q 022626 136 YSGRFLVVASGETTN 150 (294)
Q Consensus 136 ~~~d~vv~AtG~~~~ 150 (294)
+++|.||.|+|.+|.
T Consensus 168 i~adlvIgADG~~S~ 182 (415)
T PRK07364 168 LQSKLVVAADGARSP 182 (415)
T ss_pred EeeeEEEEeCCCCch
Confidence 899999999997663
No 109
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.30 E-value=6.3e-11 Score=105.70 Aligned_cols=133 Identities=14% Similarity=0.212 Sum_probs=85.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC----C--------------------CcCCC------CCCcE
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S--------------------IWKKY------SYDRL 54 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g----g--------------------~w~~~------~~~~~ 54 (294)
...+||+||||||+|+++|..|++.|++|+|+|+.+... + .|..- .+..+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 446899999999999999999999999999999976431 0 11100 01111
Q ss_pred EEecCC--ccccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCce
Q 022626 55 RLHLAK--QFCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (294)
Q Consensus 55 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (294)
.+.... ....+..... +.......++..+.+.+.+.+++.+++. +++++|++++.++ +.+.|++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~g------ 153 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQL--HCPARVVALEQDA--DRVRLRLDDG------ 153 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeEEEEEecC--CeEEEEECCC------
Confidence 111100 0011110000 0011112466788888888888877665 8999999998755 5677777653
Q ss_pred eEEEEeeCEEEEccCCCC
Q 022626 132 IEEYYSGRFLVVASGETT 149 (294)
Q Consensus 132 ~~~~~~~d~vv~AtG~~~ 149 (294)
.+ +.+|.||.|+|.++
T Consensus 154 -~~-~~a~~vV~AdG~~S 169 (392)
T PRK08773 154 -RR-LEAALAIAADGAAS 169 (392)
T ss_pred -CE-EEeCEEEEecCCCc
Confidence 46 89999999999765
No 110
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.29 E-value=1.6e-10 Score=107.48 Aligned_cols=138 Identities=19% Similarity=0.280 Sum_probs=86.7
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--------------CCCC----------cEE-Ee
Q 022626 3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYD----------RLR-LH 57 (294)
Q Consensus 3 ~~~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~--------------~~~~----------~~~-~~ 57 (294)
..+..++|+||||||+|+++|..|.+.|++|+||||.+.+....+. ...+ ... ..
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 98 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFL 98 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEe
Confidence 3345689999999999999999999999999999999854321110 0000 000 00
Q ss_pred cCCccccCCCCCCC-CCCCCC--CCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeE
Q 022626 58 LAKQFCQLPHLPFP-SSYPMF--VSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE 133 (294)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~ 133 (294)
.......+...+.. ..++.+ .++..+..++.+.+.+. ++. ++++++|++++.++ +.+.+.+.+.++ +.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~--~~v~v~~~~~~g----~~ 170 (547)
T PRK08132 99 RDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHD--DGVTLTVETPDG----PY 170 (547)
T ss_pred CCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcC--CEEEEEEECCCC----cE
Confidence 11111111111100 111111 46678888888888776 444 48999999998765 556666654222 14
Q ss_pred EEEeeCEEEEccCCCC
Q 022626 134 EYYSGRFLVVASGETT 149 (294)
Q Consensus 134 ~~~~~d~vv~AtG~~~ 149 (294)
+ +.+|+||.|+|.+|
T Consensus 171 ~-i~ad~vVgADG~~S 185 (547)
T PRK08132 171 T-LEADWVIACDGARS 185 (547)
T ss_pred E-EEeCEEEECCCCCc
Confidence 6 89999999999766
No 111
>PLN02463 lycopene beta cyclase
Probab=99.29 E-value=4.7e-11 Score=107.31 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=83.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC-----CCCcCCC------------CCCcEEEecCCccccCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-----ASIWKKY------------SYDRLRLHLAKQFCQLPHLP 69 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~-----gg~w~~~------------~~~~~~~~~~~~~~~~~~~~ 69 (294)
.+||+||||||+|+++|..|++.|++|+++|+.+.. .+.|... .++.......... ...
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~----~~~ 103 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGK----KKD 103 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCC----Ccc
Confidence 579999999999999999999999999999997632 1223210 0111111100000 000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 70 FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
.. ......++.++.+++.+.+.+.++.. + ..+|++++..+ +.+.|+++++ .+ +.+|.||.|+|..+
T Consensus 104 ~~-~~y~~V~R~~L~~~Ll~~~~~~GV~~--~-~~~V~~I~~~~--~~~~V~~~dG-------~~-i~A~lVI~AdG~~s 169 (447)
T PLN02463 104 LD-RPYGRVNRKKLKSKMLERCIANGVQF--H-QAKVKKVVHEE--SKSLVVCDDG-------VK-IQASLVLDATGFSR 169 (447)
T ss_pred cc-CcceeEEHHHHHHHHHHHHhhcCCEE--E-eeEEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEECcCCCc
Confidence 00 01123578899999999888877653 3 56888888755 5677887764 46 89999999999654
No 112
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.29 E-value=5e-11 Score=106.19 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=84.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC------------------CcCCC-----CCCcEEEecCCc-
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------------------IWKKY-----SYDRLRLHLAKQ- 61 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg------------------~w~~~-----~~~~~~~~~~~~- 61 (294)
..+||+|||||++|+++|..|++.|++|+|+|+.+.... .|..- .+..+.+.....
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 357999999999999999999999999999999865421 12110 011112211110
Q ss_pred cc-----cCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEE
Q 022626 62 FC-----QLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (294)
Q Consensus 62 ~~-----~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (294)
.. .+........... ..++..+.+.+.+.+.+++... +++++|++++.++ +.|.|+++++ .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~- 153 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT--RFGDEAESVRPRE--DEVTVTLADG-------TT- 153 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE--EECCeeEEEEEcC--CeEEEEECCC-------CE-
Confidence 00 0000000011111 2467788888888887765434 7899999997755 6688877653 46
Q ss_pred EeeCEEEEccCCCC
Q 022626 136 YSGRFLVVASGETT 149 (294)
Q Consensus 136 ~~~d~vv~AtG~~~ 149 (294)
+.+|.||.|+|.+|
T Consensus 154 ~~a~~vI~AdG~~S 167 (388)
T PRK07494 154 LSARLVVGADGRNS 167 (388)
T ss_pred EEEeEEEEecCCCc
Confidence 89999999999765
No 113
>PRK07190 hypothetical protein; Provisional
Probab=99.28 E-value=1.4e-10 Score=105.78 Aligned_cols=131 Identities=16% Similarity=0.205 Sum_probs=83.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC------------------------CCCcEEEecCCcc
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------------------------SYDRLRLHLAKQF 62 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~------------------------~~~~~~~~~~~~~ 62 (294)
.++|+||||||+|+++|..|++.|++|+|+||.+.+...-+.. .+...........
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 4799999999999999999999999999999987543211100 0000000000111
Q ss_pred ccCC--CC-CCCCC-CC--CCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEE
Q 022626 63 CQLP--HL-PFPSS-YP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (294)
Q Consensus 63 ~~~~--~~-~~~~~-~~--~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (294)
.... .. ..+.. .+ ...++..+.+.+.+.+.+.+++. +++++|+++..++ +.+.+.+.++ ++ +
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v--~~~~~v~~l~~~~--~~v~v~~~~g-------~~-v 152 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAV--KRNTSVVNIELNQ--AGCLTTLSNG-------ER-I 152 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEEcC--CeeEEEECCC-------cE-E
Confidence 0000 00 00000 01 12356778888888888887766 9999999998765 4555665443 46 8
Q ss_pred eeCEEEEccCCCC
Q 022626 137 SGRFLVVASGETT 149 (294)
Q Consensus 137 ~~d~vv~AtG~~~ 149 (294)
.+++||.|+|..|
T Consensus 153 ~a~~vVgADG~~S 165 (487)
T PRK07190 153 QSRYVIGADGSRS 165 (487)
T ss_pred EeCEEEECCCCCH
Confidence 9999999999765
No 114
>PRK10015 oxidoreductase; Provisional
Probab=99.28 E-value=1.6e-10 Score=103.96 Aligned_cols=131 Identities=13% Similarity=0.101 Sum_probs=82.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc------CCC----CCCcEEEe---------------cCCc
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW------KKY----SYDRLRLH---------------LAKQ 61 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w------~~~----~~~~~~~~---------------~~~~ 61 (294)
.+||+||||||+|++||..|++.|++|+++||.+.+|... ... ..+.+... ....
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEES 84 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCC
Confidence 5899999999999999999999999999999987654211 000 01110000 0000
Q ss_pred cccCCCCCCCC---CCCCC-CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEe
Q 022626 62 FCQLPHLPFPS---SYPMF-VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (294)
Q Consensus 62 ~~~~~~~~~~~---~~~~~-~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (294)
...+....... ....| ..+..+.+++.+.+++.+++. +.+++|+.+..++ +.+.....++ .+ +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--~~v~~v~~~~-------~~-i~ 152 (429)
T PRK10015 85 AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQF--IPGVRVDALVREG--NKVTGVQAGD-------DI-LE 152 (429)
T ss_pred ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeC--CEEEEEEeCC-------eE-EE
Confidence 00000000000 00122 377888999999999888776 8889999987654 4443222221 46 89
Q ss_pred eCEEEEccCCCC
Q 022626 138 GRFLVVASGETT 149 (294)
Q Consensus 138 ~d~vv~AtG~~~ 149 (294)
+|.||+|+|..+
T Consensus 153 A~~VI~AdG~~s 164 (429)
T PRK10015 153 ANVVILADGVNS 164 (429)
T ss_pred CCEEEEccCcch
Confidence 999999999644
No 115
>PRK07045 putative monooxygenase; Reviewed
Probab=99.25 E-value=2.5e-10 Score=101.69 Aligned_cols=134 Identities=22% Similarity=0.280 Sum_probs=84.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC---C---CcCCC-------------------CCCcEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---S---IWKKY-------------------SYDRLRLHLAK 60 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g---g---~w~~~-------------------~~~~~~~~~~~ 60 (294)
.+++|+||||||+|+++|..|++.|++|+|+|+.+... + ++... ....+......
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 35799999999999999999999999999999988541 1 11110 00111111111
Q ss_pred c-cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEe
Q 022626 61 Q-FCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (294)
Q Consensus 61 ~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (294)
. ...+..... +..+....++.++.+.+.+.+... +++ ++++++|++++.+++...+.|++.++ ++ +.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g-------~~-~~ 153 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGTVTSVTLSDG-------ER-VA 153 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCcEEEEEeCCC-------CE-EE
Confidence 1 111111000 011111246777888777776543 444 49999999998866433456777654 46 89
Q ss_pred eCEEEEccCCCC
Q 022626 138 GRFLVVASGETT 149 (294)
Q Consensus 138 ~d~vv~AtG~~~ 149 (294)
+|.||.|+|.+|
T Consensus 154 ~~~vIgADG~~S 165 (388)
T PRK07045 154 PTVLVGADGARS 165 (388)
T ss_pred CCEEEECCCCCh
Confidence 999999999766
No 116
>PRK06753 hypothetical protein; Provisional
Probab=99.25 E-value=1.9e-10 Score=101.92 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=81.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC-------------------cCC-----CCCCcEEEecCCccc
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-------------------WKK-----YSYDRLRLHLAKQFC 63 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~-------------------w~~-----~~~~~~~~~~~~~~~ 63 (294)
.+|+||||||+|+++|..|++.|++|+|+||.+.+... |.. .....+....+...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~- 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT- 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-
Confidence 38999999999999999999999999999998854311 000 00111111111100
Q ss_pred cCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEE
Q 022626 64 QLPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (294)
Q Consensus 64 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv 142 (294)
.+...++... .....++..+.+.|.+.+.. ..++++++|++++.++ +.+.|+++++ .+ +.+|.||
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~~~vi 145 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKE----DAIFTGKEVTKIENET--DKVTIHFADG-------ES-EAFDLCI 145 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCCC----ceEEECCEEEEEEecC--CcEEEEECCC-------CE-EecCEEE
Confidence 0011111111 11225778888888776543 2458999999998654 6678887664 46 7999999
Q ss_pred EccCCCC
Q 022626 143 VASGETT 149 (294)
Q Consensus 143 ~AtG~~~ 149 (294)
.|+|.+|
T Consensus 146 gadG~~S 152 (373)
T PRK06753 146 GADGIHS 152 (373)
T ss_pred ECCCcch
Confidence 9999766
No 117
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.24 E-value=8e-11 Score=105.48 Aligned_cols=132 Identities=16% Similarity=0.251 Sum_probs=82.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC-------------C--------------CcCCC----C--CCc
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------------S--------------IWKKY----S--YDR 53 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g-------------g--------------~w~~~----~--~~~ 53 (294)
.+||+|||||++|+++|..|.+.|++|+|+|+.+... . .|..- . +..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 3699999999999999999999999999999986210 0 11100 0 011
Q ss_pred EEEecCCcc--ccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCc
Q 022626 54 LRLHLAKQF--CQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (294)
Q Consensus 54 ~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (294)
+........ ..+...... .......++..+.+.+.+.+.+.+++. ++++++++++.++ +.|.|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g----- 152 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGL--LANARLEQMRRSG--DDWLLTLADG----- 152 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEE--EcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 111111100 001100000 000112355677777777776666544 8899999998765 5688887654
Q ss_pred eeEEEEeeCEEEEccCCCCC
Q 022626 131 EIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 131 ~~~~~~~~d~vv~AtG~~~~ 150 (294)
.+ +++|.||.|+|.+|.
T Consensus 153 --~~-~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 153 --RQ-LRAPLVVAADGANSA 169 (405)
T ss_pred --CE-EEeCEEEEecCCCch
Confidence 46 899999999997663
No 118
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.24 E-value=1.8e-10 Score=103.19 Aligned_cols=131 Identities=20% Similarity=0.296 Sum_probs=84.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CCeEEEecCCCCCC---------------------CcCC-----CCCCcEEEecC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS---------------------IWKK-----YSYDRLRLHLA 59 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g--~~v~iie~~~~~gg---------------------~w~~-----~~~~~~~~~~~ 59 (294)
+||+||||||+|+++|..|++.| ++|+|+|+.+.... .|.. .....+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 69999999999999999999995 99999999864210 1100 00111111111
Q ss_pred Cc-------cccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCce
Q 022626 60 KQ-------FCQLPHLP-FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (294)
Q Consensus 60 ~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (294)
.. ...+.... ....+....++..+.+.+.+.+.+.++.. +++++|++++.++ +.+.|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g------ 151 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDL--REATSVTDFETRD--EGVTVTLSDG------ 151 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CEEEEEECCC------
Confidence 00 00110000 00111123578899999999888877665 8999999997755 5677777653
Q ss_pred eEEEEeeCEEEEccCCCCC
Q 022626 132 IEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 132 ~~~~~~~d~vv~AtG~~~~ 150 (294)
.+ +.+|.||.|+|..|.
T Consensus 152 -~~-~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 152 -SV-LEARLLVAADGARSK 168 (403)
T ss_pred -CE-EEeCEEEEcCCCChH
Confidence 46 899999999996553
No 119
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.24 E-value=1.7e-10 Score=102.04 Aligned_cols=122 Identities=21% Similarity=0.236 Sum_probs=82.7
Q ss_pred eEEEECCChHHHHHHHHH--HhCCCCeEEEecCCCC--CC--CcCCC-------------CCCcEEEecCCccccCCCCC
Q 022626 9 EVIMVGAGTSGLATAACL--SLQSIPYVILERENCY--AS--IWKKY-------------SYDRLRLHLAKQFCQLPHLP 69 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L--~~~g~~v~iie~~~~~--gg--~w~~~-------------~~~~~~~~~~~~~~~~~~~~ 69 (294)
||+||||||||+++|..| .+.|.+|+|+|+++.. .. +|..- .++...+..+..-....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~--- 77 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILI--- 77 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEc---
Confidence 799999999999999999 7779999999988765 22 33321 11112221111111000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCC
Q 022626 70 FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (294)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~ 148 (294)
.......++..+.+++.+.+...+ .. +++++|++++... ..+.|++.++ .+ ++++.||.|+|..
T Consensus 78 --~~~Y~~i~~~~f~~~l~~~~~~~~-~~--~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 78 --DYPYCMIDRADFYEFLLERAAAGG-VI--RLNARVTSIEETG--DGVLVVLADG-------RT-IRARVVVDARGPS 141 (374)
T ss_pred --ccceEEEEHHHHHHHHHHHhhhCC-eE--EEccEEEEEEecC--ceEEEEECCC-------CE-EEeeEEEECCCcc
Confidence 000113588999999998888443 33 8889999998766 4677777765 46 8999999999943
No 120
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.24 E-value=1.7e-10 Score=102.59 Aligned_cols=131 Identities=21% Similarity=0.299 Sum_probs=87.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC-CCC--C-----------------CcC---C---CCCCcEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYA--S-----------------IWK---K---YSYDRLRLHLAK 60 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~-~~g--g-----------------~w~---~---~~~~~~~~~~~~ 60 (294)
.++|+||||||+|+++|..|++.|++|+|+|+.+ ..- | .+. . ..+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999982 111 0 100 0 001111111111
Q ss_pred c-cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcC-CCceeeeCcEEEEEEEcCCCCcEEEEEe-ccCCCCceeEEEE
Q 022626 61 Q-FCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYY 136 (294)
Q Consensus 61 ~-~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~ 136 (294)
. ...+....... ......++.++...|.+.+...+ +.. +++++|+.++.++ +...+++. ++ ++ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~--~~~~~v~~~~~~~--~~v~v~l~~dG-------~~-~ 149 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTL--RFGAEVEAVEQDG--DGVTVTLSFDG-------ET-L 149 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEE--EcCceEEEEEEcC--CceEEEEcCCC-------cE-E
Confidence 1 11122212221 11223588899999999998775 455 9999999998876 55667777 43 47 8
Q ss_pred eeCEEEEccCCCC
Q 022626 137 SGRFLVVASGETT 149 (294)
Q Consensus 137 ~~d~vv~AtG~~~ 149 (294)
++|.||.|+|.+|
T Consensus 150 ~a~llVgADG~~S 162 (387)
T COG0654 150 DADLLVGADGANS 162 (387)
T ss_pred ecCEEEECCCCch
Confidence 9999999999766
No 121
>PRK06126 hypothetical protein; Provisional
Probab=99.23 E-value=4.5e-10 Score=104.43 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=84.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC----------------------CC------CcEEE
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY----------------------SY------DRLRL 56 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~----------------------~~------~~~~~ 56 (294)
...++|+||||||+|+++|..|++.|++|+|+||.+.....-+.. .. .....
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence 446899999999999999999999999999999987432110000 00 00000
Q ss_pred e--cCCccccCCCCC------C--------CC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcE
Q 022626 57 H--LAKQFCQLPHLP------F--------PS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMW 118 (294)
Q Consensus 57 ~--~~~~~~~~~~~~------~--------~~-~~~~~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~ 118 (294)
. .......+.... . .. ......++..+.+.+.+.+.+. ++.. +++++|++++.++ +.+
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~v 160 (545)
T PRK06126 85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTL--RYGHRLTDFEQDA--DGV 160 (545)
T ss_pred ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceE--EeccEEEEEEECC--CeE
Confidence 0 000011110000 0 00 0011246677888888888765 5555 9999999998765 456
Q ss_pred EEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 119 NVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 119 ~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
.+++.+..++ +..+ +.+|+||.|+|.+|
T Consensus 161 ~v~~~~~~~g--~~~~-i~ad~vVgADG~~S 188 (545)
T PRK06126 161 TATVEDLDGG--ESLT-IRADYLVGCDGARS 188 (545)
T ss_pred EEEEEECCCC--cEEE-EEEEEEEecCCcch
Confidence 6666542222 2256 89999999999766
No 122
>PRK06185 hypothetical protein; Provisional
Probab=99.22 E-value=2.9e-10 Score=101.93 Aligned_cols=136 Identities=18% Similarity=0.342 Sum_probs=83.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC-----CC--------------CcCCC---C---CCcEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-----AS--------------IWKKY---S---YDRLRLHLAK 60 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~-----gg--------------~w~~~---~---~~~~~~~~~~ 60 (294)
..+||+|||||++|+++|..|++.|++|+|+|+.+.. +. .|..- . +..+......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 4689999999999999999999999999999997642 11 12110 0 1111111111
Q ss_pred c-c--ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEE
Q 022626 61 Q-F--CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (294)
Q Consensus 61 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (294)
. . ..+...+.+..+..+.++..+.+++.+.+.+. ++.. +++++|+++..++ +....|.+...++ +.+ +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i--~~~~~v~~~~~~~-~~v~~v~~~~~~g----~~~-i 156 (407)
T PRK06185 85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTL--RMGAEVTGLIEEG-GRVTGVRARTPDG----PGE-I 156 (407)
T ss_pred eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEE--EeCCEEEEEEEeC-CEEEEEEEEcCCC----cEE-E
Confidence 1 1 11111111111222357778888888887765 5554 8899999997764 2222344432211 146 8
Q ss_pred eeCEEEEccCCCC
Q 022626 137 SGRFLVVASGETT 149 (294)
Q Consensus 137 ~~d~vv~AtG~~~ 149 (294)
.+|.||.|+|.+|
T Consensus 157 ~a~~vI~AdG~~S 169 (407)
T PRK06185 157 RADLVVGADGRHS 169 (407)
T ss_pred EeCEEEECCCCch
Confidence 9999999999766
No 123
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.22 E-value=1.3e-10 Score=103.82 Aligned_cols=133 Identities=23% Similarity=0.264 Sum_probs=83.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC------CcCC--------CC----------CCcEEEecC---
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK--------YS----------YDRLRLHLA--- 59 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg------~w~~--------~~----------~~~~~~~~~--- 59 (294)
+.+|+|||||++|+++|..|++.|++|+|+||.+.++. +|.. .. .........
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 57999999999999999999999999999999875532 1100 00 011111100
Q ss_pred CccccCCCC-CCCCCC--CC-CCCHHHHHHHHHHHHHHcC-CCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEE
Q 022626 60 KQFCQLPHL-PFPSSY--PM-FVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (294)
Q Consensus 60 ~~~~~~~~~-~~~~~~--~~-~~~~~~~~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (294)
.....++.. .+...+ +. ...+.++.+.+.+.+.+.+ +.. +++++|+++..++ +.+.+++.++ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~--~~~~~v~~i~~~~--~~v~v~~~~g-------~~ 152 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEF--RTSTHVVGIEQDG--DGVTVFDQQG-------NR 152 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEE--EeCCEEEEEecCC--CceEEEEcCC-------CE
Confidence 000000000 000001 11 2467788888888776653 444 8899999997654 5577776553 46
Q ss_pred EEeeCEEEEccCCCCCC
Q 022626 135 YYSGRFLVVASGETTNP 151 (294)
Q Consensus 135 ~~~~d~vv~AtG~~~~p 151 (294)
+.+|.||.|+|.+|..
T Consensus 153 -~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 153 -WTGDALIGCDGVKSVV 168 (396)
T ss_pred -EecCEEEECCCcChHH
Confidence 8999999999976643
No 124
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.22 E-value=3.8e-10 Score=100.66 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=82.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC----C--------------CCCcEEEecCCccc-cCCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK----Y--------------SYDRLRLHLAKQFC-QLPHL 68 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~----~--------------~~~~~~~~~~~~~~-~~~~~ 68 (294)
+||+||||||+|++||..|++.|++|+++||....+..+.. . ....+.+..+.... .+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 48999999999999999999999999999997643321110 0 01111222221110 00100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEc-CCCCcEEEEEeccC----CCCceeEEEEeeCEEEE
Q 022626 69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYD-EATNMWNVKASNLL----SPGREIEEYYSGRFLVV 143 (294)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~-~~~~~~~v~~~~~~----~~~~~~~~~~~~d~vv~ 143 (294)
.....+....++..+.+++.+.+.+.+.+. +.+ ++..+... ...+.+.|+....+ .+ +..+ ++++.||.
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v--~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-i~a~~VIg 154 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATL--ING-LVTKLSLPADADDPYTLHYISSDSGGPSG--TRCT-LEVDAVIG 154 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEE--Ecc-eEEEEEeccCCCceEEEEEeeccccccCC--CccE-EEeCEEEE
Confidence 001111123689999999999999988765 555 46666432 22355667653211 01 2257 89999999
Q ss_pred ccCCCC
Q 022626 144 ASGETT 149 (294)
Q Consensus 144 AtG~~~ 149 (294)
|+|..|
T Consensus 155 ADG~~S 160 (398)
T TIGR02028 155 ADGANS 160 (398)
T ss_pred CCCcch
Confidence 999655
No 125
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.21 E-value=1.8e-10 Score=102.71 Aligned_cols=132 Identities=18% Similarity=0.302 Sum_probs=82.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC----C---------------------CCcCCC------CCCcE
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----A---------------------SIWKKY------SYDRL 54 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~----g---------------------g~w~~~------~~~~~ 54 (294)
..+||+||||||+|+++|..|++.|++|+|+|+.+.. + |.|..- .+..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 3589999999999999999999999999999997521 1 111110 00011
Q ss_pred EEe-cCCccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCce
Q 022626 55 RLH-LAKQFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (294)
Q Consensus 55 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (294)
... .......+....... ......++..+.+.+.+.+... ++.. +++++|+++..++ +.|.|++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~g------ 153 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTL--RCPASLQALQRDD--DGWELTLADG------ 153 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEE--EcCCeeEEEEEcC--CeEEEEECCC------
Confidence 100 000000011000000 0011246777888888777765 6554 8899999987655 5688877653
Q ss_pred eEEEEeeCEEEEccCCCC
Q 022626 132 IEEYYSGRFLVVASGETT 149 (294)
Q Consensus 132 ~~~~~~~d~vv~AtG~~~ 149 (294)
.+ +++|.||.|+|.+|
T Consensus 154 -~~-~~a~~vI~AdG~~S 169 (391)
T PRK08020 154 -EE-IQAKLVIGADGANS 169 (391)
T ss_pred -CE-EEeCEEEEeCCCCc
Confidence 46 89999999999766
No 126
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.21 E-value=3.5e-10 Score=102.11 Aligned_cols=138 Identities=12% Similarity=0.122 Sum_probs=83.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC----CCCcCCC--------------CCCcEEEecCCcc-ccCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----ASIWKKY--------------SYDRLRLHLAKQF-CQLP 66 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~----gg~w~~~--------------~~~~~~~~~~~~~-~~~~ 66 (294)
.++||+||||||+|++||..|++.|++|+++|+.... ||.-... ....+.+..+... ..+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 3589999999999999999999999999999987531 2210000 0011111111110 0111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcC-CCCcEEEEEeccC----CCCceeEEEEeeCEE
Q 022626 67 HLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNLL----SPGREIEEYYSGRFL 141 (294)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~----~~~~~~~~~~~~d~v 141 (294)
....+..+-...++..+.++|.+.+.+.|.+. +.+ .++++.... ..+.+.|++.+.. ++ +..+ +.+|.|
T Consensus 118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~--~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-v~a~~V 191 (450)
T PLN00093 118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATL--ING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAG--TPKT-LEVDAV 191 (450)
T ss_pred ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEE--Eec-eEEEEEeccCCCCcEEEEEEeccccccCC--CccE-EEeCEE
Confidence 00000011112689999999999999988765 544 577775432 2345667664320 00 1257 899999
Q ss_pred EEccCCCC
Q 022626 142 VVASGETT 149 (294)
Q Consensus 142 v~AtG~~~ 149 (294)
|.|+|..|
T Consensus 192 IgADG~~S 199 (450)
T PLN00093 192 IGADGANS 199 (450)
T ss_pred EEcCCcch
Confidence 99999755
No 127
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.21 E-value=2.2e-10 Score=101.88 Aligned_cols=130 Identities=15% Similarity=0.197 Sum_probs=82.6
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC--------CcCC-----------CCCCc-----------EEEec
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKK-----------YSYDR-----------LRLHL 58 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg--------~w~~-----------~~~~~-----------~~~~~ 58 (294)
||+||||||+|+++|..|++.|++|+|+||.+.++- .... ...+. +....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 699999999999999999999999999999975421 0000 00001 11111
Q ss_pred CCc--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcC-CCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEE
Q 022626 59 AKQ--FCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (294)
Q Consensus 59 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (294)
... ...+....... ......++.++.+.+.+.+.+.+ +.. +++++|+++..++ +.+.+.++++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~ 149 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTL--LCPARVVELPRHS--DHVELTLDDG-------QQ 149 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--ecCCeEEEEEecC--CeeEEEECCC-------CE
Confidence 110 00010000000 00112467788888888887765 444 8999999997755 5677777654 46
Q ss_pred EEeeCEEEEccCCCCC
Q 022626 135 YYSGRFLVVASGETTN 150 (294)
Q Consensus 135 ~~~~d~vv~AtG~~~~ 150 (294)
+.+|.||.|+|.+|.
T Consensus 150 -~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 150 -LRARLLVGADGANSK 164 (385)
T ss_pred -EEeeEEEEeCCCCCH
Confidence 899999999997653
No 128
>PRK07588 hypothetical protein; Provisional
Probab=99.21 E-value=2e-10 Score=102.43 Aligned_cols=131 Identities=14% Similarity=0.123 Sum_probs=82.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC--C----CcCCC------------------CCCcEEEecCC--c
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S----IWKKY------------------SYDRLRLHLAK--Q 61 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g--g----~w~~~------------------~~~~~~~~~~~--~ 61 (294)
.+|+|||||++|+++|..|++.|++|+|+||.+... | .|... ....+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 389999999999999999999999999999887542 1 12110 01111121111 1
Q ss_pred cccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEee
Q 022626 62 FCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (294)
Q Consensus 62 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 138 (294)
...+....+..... ...++.++...+.+.+.. + ..++++++|++++.++ +.+.|+++++ ++ +.+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~--v~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~ 147 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-Q--VETIFDDSIATIDEHR--DGVRVTFERG-------TP-RDF 147 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-C--eEEEeCCEEeEEEECC--CeEEEEECCC-------CE-EEe
Confidence 11111111111111 124677777777654432 3 3459999999998765 5688888764 45 789
Q ss_pred CEEEEccCCCCCC
Q 022626 139 RFLVVASGETTNP 151 (294)
Q Consensus 139 d~vv~AtG~~~~p 151 (294)
|.||.|+|.+|.-
T Consensus 148 d~vIgADG~~S~v 160 (391)
T PRK07588 148 DLVIGADGLHSHV 160 (391)
T ss_pred CEEEECCCCCccc
Confidence 9999999976643
No 129
>PRK09126 hypothetical protein; Provisional
Probab=99.21 E-value=3e-10 Score=101.27 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=79.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC--------CC---CcCC--------CCCC-----------cEEE
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--------AS---IWKK--------YSYD-----------RLRL 56 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~--------gg---~w~~--------~~~~-----------~~~~ 56 (294)
+++|+||||||+|+++|..|++.|++|+|+||.+.. |. ++.. ..++ ...+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 579999999999999999999999999999998752 11 1100 0000 1111
Q ss_pred ecCCcc--ccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH-cCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCcee
Q 022626 57 HLAKQF--CQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (294)
Q Consensus 57 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (294)
...... ..+..... ........++..+.+.+.+.+.+ .++.. +++++|++++.++ +.+.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i--~~~~~v~~~~~~~--~~~~v~~~~g------- 151 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIEL--LTGTRVTAVRTDD--DGAQVTLANG------- 151 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEE--EcCCeEEEEEEcC--CeEEEEEcCC-------
Confidence 111000 00100000 00111113455666655555543 35554 9999999997654 5677777653
Q ss_pred EEEEeeCEEEEccCCCCC
Q 022626 133 EEYYSGRFLVVASGETTN 150 (294)
Q Consensus 133 ~~~~~~d~vv~AtG~~~~ 150 (294)
.+ +.+|.||.|+|.+|.
T Consensus 152 ~~-~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 152 RR-LTARLLVAADSRFSA 168 (392)
T ss_pred CE-EEeCEEEEeCCCCch
Confidence 46 899999999996553
No 130
>PRK07538 hypothetical protein; Provisional
Probab=99.21 E-value=2e-09 Score=96.64 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=82.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC----CC--cCC--------CC----------CCcEEEecCC--c
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----SI--WKK--------YS----------YDRLRLHLAK--Q 61 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g----g~--w~~--------~~----------~~~~~~~~~~--~ 61 (294)
+||+|||||++|+++|..|++.|++|+|||+.+.+. |. +.. .. .....+.... .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 489999999999999999999999999999987532 11 000 00 0111111110 0
Q ss_pred cccCCCCCCCC--CCCC-CCCHHHHHHHHHHHHHH-cCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEe
Q 022626 62 FCQLPHLPFPS--SYPM-FVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (294)
Q Consensus 62 ~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (294)
....+ ..... .++. ..++.++...|.+.+.+ .+. ..++++++|+++..++ +...+.+.++..+ ...+ +.
T Consensus 81 ~~~~~-~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~--~~~~~~~~~~~~g--~~~~-~~ 153 (413)
T PRK07538 81 IWSEP-RGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA--DVTVVFLGDRAGG--DLVS-VR 153 (413)
T ss_pred Eeecc-CCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC--CceEEEEeccCCC--ccce-EE
Confidence 00000 00000 1111 25788888888777654 343 2359999999998765 3345555443221 2257 89
Q ss_pred eCEEEEccCCCCC
Q 022626 138 GRFLVVASGETTN 150 (294)
Q Consensus 138 ~d~vv~AtG~~~~ 150 (294)
+|.||.|+|.+|.
T Consensus 154 adlvIgADG~~S~ 166 (413)
T PRK07538 154 GDVLIGADGIHSA 166 (413)
T ss_pred eeEEEECCCCCHH
Confidence 9999999997763
No 131
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.21 E-value=3.5e-10 Score=100.77 Aligned_cols=130 Identities=14% Similarity=0.188 Sum_probs=82.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC---CCcCCCC----------------CC-----------cEEE
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKYS----------------YD-----------RLRL 56 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g---g~w~~~~----------------~~-----------~~~~ 56 (294)
.++|+||||||+|+++|..|++.|++|+|+|+.+... ..|.... .+ .+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 5799999999999999999999999999999987643 1222110 00 0000
Q ss_pred ecCCccccCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHcC-CCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCcee
Q 022626 57 HLAKQFCQLPHLPFPSSYPM---FVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (294)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (294)
... ....+.........+. ..++..+.+.+.+.+.+.+ +.. + +++|+++..++ +.+.|++.++
T Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~--~-~~~v~~i~~~~--~~~~v~~~~g------- 151 (388)
T PRK07608 85 FGD-AHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTW--F-PARAQGLEVDP--DAATLTLADG------- 151 (388)
T ss_pred EEC-CCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEE--E-cceeEEEEecC--CeEEEEECCC-------
Confidence 000 0000000000011111 1357788888888888775 443 5 88899887654 5677877654
Q ss_pred EEEEeeCEEEEccCCCCC
Q 022626 133 EEYYSGRFLVVASGETTN 150 (294)
Q Consensus 133 ~~~~~~d~vv~AtG~~~~ 150 (294)
.+ +.+|.||.|+|.+|.
T Consensus 152 ~~-~~a~~vI~adG~~S~ 168 (388)
T PRK07608 152 QV-LRADLVVGADGAHSW 168 (388)
T ss_pred CE-EEeeEEEEeCCCCch
Confidence 46 899999999997653
No 132
>PRK11445 putative oxidoreductase; Provisional
Probab=99.20 E-value=4.5e-10 Score=98.64 Aligned_cols=131 Identities=12% Similarity=0.138 Sum_probs=80.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC---------CC-CcCC--------CCC-CcEEEecCCccccCCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---------AS-IWKK--------YSY-DRLRLHLAKQFCQLPHL 68 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~---------gg-~w~~--------~~~-~~~~~~~~~~~~~~~~~ 68 (294)
+||+||||||+|+++|..|++. ++|+++|+.+.. |+ ++.. ... +......+. .......
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~-~~~~~~~ 79 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ-IFAVKTI 79 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc-cceeeEe
Confidence 6999999999999999999999 999999998743 22 1100 000 000000000 0000000
Q ss_pred CCC----C--CCCC-CCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEE
Q 022626 69 PFP----S--SYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (294)
Q Consensus 69 ~~~----~--~~~~-~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~v 141 (294)
.+. . ..+. ..++.++.+++.+.+ ..+++. ++++.|++++.++ +.|.|.+...+ ...+ +++|.|
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~~g----~~~~-i~a~~v 149 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVEV--YHNSLCRKIWRED--DGYHVIFRADG----WEQH-ITARYL 149 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHH-hcCCEE--EcCCEEEEEEEcC--CEEEEEEecCC----cEEE-EEeCEE
Confidence 000 0 1011 267888888888754 445554 8999999998765 56888763221 1246 899999
Q ss_pred EEccCCCCC
Q 022626 142 VVASGETTN 150 (294)
Q Consensus 142 v~AtG~~~~ 150 (294)
|.|+|..|.
T Consensus 150 V~AdG~~S~ 158 (351)
T PRK11445 150 VGADGANSM 158 (351)
T ss_pred EECCCCCcH
Confidence 999997653
No 133
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.19 E-value=4e-10 Score=99.83 Aligned_cols=130 Identities=15% Similarity=0.262 Sum_probs=83.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC-------C----------------CCcCC-----CCCCcEEEecC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------A----------------SIWKK-----YSYDRLRLHLA 59 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~-------g----------------g~w~~-----~~~~~~~~~~~ 59 (294)
.||+||||||+|+++|..|++.|++|+|+|+.+.. + |.|.. ..+..+....+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 58999999999999999999999999999986321 1 12211 01122222111
Q ss_pred C--ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEe
Q 022626 60 K--QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (294)
Q Consensus 60 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (294)
. ....+.. ..........++.++...+.+.+.+.+. ..++++++++++..++ +.+.|.+++ .+ ++
T Consensus 82 ~g~~~~~~~~-~~~~~~g~~v~r~~L~~~L~~~~~~~~~-v~~~~~~~v~~i~~~~--~~v~v~~~~--------~~-~~ 148 (374)
T PRK06617 82 KASEILDLRN-DADAVLGYVVKNSDFKKILLSKITNNPL-ITLIDNNQYQEVISHN--DYSIIKFDD--------KQ-IK 148 (374)
T ss_pred CCceEEEecC-CCCCCcEEEEEHHHHHHHHHHHHhcCCC-cEEECCCeEEEEEEcC--CeEEEEEcC--------CE-Ee
Confidence 1 1111111 0000111224788999999988887752 2337899999987755 567777753 35 89
Q ss_pred eCEEEEccCCCCC
Q 022626 138 GRFLVVASGETTN 150 (294)
Q Consensus 138 ~d~vv~AtG~~~~ 150 (294)
+|.||.|+|.+|.
T Consensus 149 adlvIgADG~~S~ 161 (374)
T PRK06617 149 CNLLIICDGANSK 161 (374)
T ss_pred eCEEEEeCCCCch
Confidence 9999999997664
No 134
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.18 E-value=7e-10 Score=98.95 Aligned_cols=132 Identities=17% Similarity=0.149 Sum_probs=80.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC---C----C--------------CcCC-----CCCCcEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---A----S--------------IWKK-----YSYDRLRLHLAK 60 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~---g----g--------------~w~~-----~~~~~~~~~~~~ 60 (294)
++||+||||||+|+++|..|++.|++|+|+|+.+.. + + .|.. .....+.+....
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 469999999999999999999999999999998741 1 1 1100 011112221111
Q ss_pred ccccCCCCCCCCCC--C--CCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEe-ccCCCCceeEEE
Q 022626 61 QFCQLPHLPFPSSY--P--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEY 135 (294)
Q Consensus 61 ~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~ 135 (294)
....+ +++... . ...++.++.+.+.+.+...++.. ++++++++++..+ .....|++. ++ ++.+
T Consensus 82 ~~~~~---~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v--~~~~~v~~i~~~~-~~~~~V~~~~~G-----~~~~- 149 (392)
T PRK08243 82 RRHRI---DLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPI--RFEASDVALHDFD-SDRPYVTYEKDG-----EEHR- 149 (392)
T ss_pred EEEEe---ccccccCCceEEEeCcHHHHHHHHHHHHhCCCeE--EEeeeEEEEEecC-CCceEEEEEcCC-----eEEE-
Confidence 11111 111110 0 11234566666666666667665 9999999887522 233446653 32 2257
Q ss_pred EeeCEEEEccCCCCC
Q 022626 136 YSGRFLVVASGETTN 150 (294)
Q Consensus 136 ~~~d~vv~AtG~~~~ 150 (294)
+++|.||.|+|.+|.
T Consensus 150 i~ad~vVgADG~~S~ 164 (392)
T PRK08243 150 LDCDFIAGCDGFHGV 164 (392)
T ss_pred EEeCEEEECCCCCCc
Confidence 899999999998764
No 135
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.18 E-value=3e-10 Score=102.65 Aligned_cols=135 Identities=17% Similarity=0.284 Sum_probs=82.4
Q ss_pred CeEEEECCChHHHHHHHHHHh----CCCCeEEEecCC--CCC--------C---------------------CcCCC---
Q 022626 8 VEVIMVGAGTSGLATAACLSL----QSIPYVILEREN--CYA--------S---------------------IWKKY--- 49 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~----~g~~v~iie~~~--~~g--------g---------------------~w~~~--- 49 (294)
+||+||||||+|+++|..|++ .|++|+|||+.+ ... + .|..-
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999998 799999999943 211 1 11100
Q ss_pred ---CCCcEEEecCCc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC-CceeeeCcEEEEEEEc-----CCCCcE
Q 022626 50 ---SYDRLRLHLAKQ--FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNI-GPSIRYQRSVESASYD-----EATNMW 118 (294)
Q Consensus 50 ---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-~~~i~~~~~V~~i~~~-----~~~~~~ 118 (294)
.+..+....... ...++............++..+.+.+.+.+.+.+- ...++++++|++++.+ ++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 001111111110 01111111000011124678888888888877641 2445999999999753 223456
Q ss_pred EEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 119 NVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 119 ~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
.|++.++ ++ +++|.||.|+|.+|.
T Consensus 161 ~v~~~~g-------~~-i~a~llVgADG~~S~ 184 (437)
T TIGR01989 161 HITLSDG-------QV-LYTKLLIGADGSNSN 184 (437)
T ss_pred EEEEcCC-------CE-EEeeEEEEecCCCCh
Confidence 7777654 56 899999999997663
No 136
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.18 E-value=1.7e-10 Score=93.47 Aligned_cols=123 Identities=16% Similarity=0.163 Sum_probs=79.6
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecC----------------------------C
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLA----------------------------K 60 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~----------------------------~ 60 (294)
+|+|||+|++|++||..|++.|.+|++|||...+||-...+..+...++.. .
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 699999999999999999999999999999998888433222111111110 1
Q ss_pred ccccCCCC---CCCCCCC--CCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEE
Q 022626 61 QFCQLPHL---PFPSSYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (294)
Q Consensus 61 ~~~~~~~~---~~~~~~~--~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (294)
....+.+- +.+++.+ ..+....+.+|+. .+++. +++++|+.+.+.+ +.|+++.++++ +.
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-----tdL~V--~~~~rVt~v~~~~--~~W~l~~~~g~------~~- 146 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-----TDLTV--VLETRVTEVARTD--NDWTLHTDDGT------RH- 146 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHh-----ccchh--hhhhhhhhheecC--CeeEEEecCCC------cc-
Confidence 11222211 1111111 2223333333322 24555 8999999998875 88999997753 35
Q ss_pred EeeCEEEEccCC
Q 022626 136 YSGRFLVVASGE 147 (294)
Q Consensus 136 ~~~d~vv~AtG~ 147 (294)
..+|.||+|.-.
T Consensus 147 ~~~d~vvla~PA 158 (331)
T COG3380 147 TQFDDVVLAIPA 158 (331)
T ss_pred cccceEEEecCC
Confidence 689999999875
No 137
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.17 E-value=1.9e-10 Score=91.00 Aligned_cols=136 Identities=17% Similarity=0.228 Sum_probs=76.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCC-CCCcEEEecCCc-cccCCCCCCCCCCCCC--CCHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLAKQ-FCQLPHLPFPSSYPMF--VSRA 81 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg-~w~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 81 (294)
.+||+||||||+|++||+.|++.|++|++||++..+|| .|... .++.+..+.+.. +..--..++.+.-..+ .+..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 47999999999999999999999999999999988875 78654 455665554422 1111112222111111 3677
Q ss_pred HHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEe------ccCCCCceeEEEEeeCEEEEccCC
Q 022626 82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS------NLLSPGREIEEYYSGRFLVVASGE 147 (294)
Q Consensus 82 ~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~------~~~~~~~~~~~~~~~d~vv~AtG~ 147 (294)
++...|..-+-+.+... ...+.|+++-..++...--|.+. .+... .+.. ++++.||-||||
T Consensus 97 ~~~s~L~s~a~~aGaki--fn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHv--DPl~-i~ak~ViDaTGH 163 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKI--FNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHV--DPLT-IRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHTTTEEE--EETEEEEEEEEECSCEEEEEEEEEHHHHTT--T---B-EE-EEESEEEE---S
T ss_pred HHHHHHHHHHhcCCCEE--EeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCC--Ccce-EEEeEEEeCCCC
Confidence 88888777777777655 77778888865542111112221 11111 2357 899999999996
No 138
>PRK07236 hypothetical protein; Provisional
Probab=99.17 E-value=1.3e-09 Score=96.97 Aligned_cols=133 Identities=14% Similarity=0.118 Sum_probs=77.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC----C-CC--cCC--------CCCCcEEEecCC---ccccCC
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----A-SI--WKK--------YSYDRLRLHLAK---QFCQLP 66 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~----g-g~--w~~--------~~~~~~~~~~~~---~~~~~~ 66 (294)
+.+.+|+|||||++|+++|..|++.|++|+|+||.+.. | |. +.. ...+......+. .+....
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 34689999999999999999999999999999998632 1 10 100 000000000000 000000
Q ss_pred CCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEc
Q 022626 67 HLPFP-SSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA 144 (294)
Q Consensus 67 ~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~A 144 (294)
..... ...+ ....+..+.+.+.+ .+. ...++++++|++++.++ +.++|++.++ .+ +.+|.||.|
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~ad~vIgA 149 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG--DRVTARFADG-------RR-ETADLLVGA 149 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCEEEEC
Confidence 00000 0000 12244555554443 222 22459999999998755 5677888764 46 899999999
Q ss_pred cCCCCCC
Q 022626 145 SGETTNP 151 (294)
Q Consensus 145 tG~~~~p 151 (294)
.|.+|.-
T Consensus 150 DG~~S~v 156 (386)
T PRK07236 150 DGGRSTV 156 (386)
T ss_pred CCCCchH
Confidence 9977643
No 139
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.17 E-value=2.8e-10 Score=101.16 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=81.5
Q ss_pred eEEEECCChHHHHHHHHHHhCC-CCeEEEecCCCCCC----------CcCC--------CCCC----------cEEEecC
Q 022626 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYAS----------IWKK--------YSYD----------RLRLHLA 59 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g-~~v~iie~~~~~gg----------~w~~--------~~~~----------~~~~~~~ 59 (294)
||+||||||+|+++|..|++.| ++|+|+||.+...- ++.. ...+ ...+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 6999999999999999999999 99999999864311 1100 0000 0111000
Q ss_pred Cc--cccCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEE
Q 022626 60 KQ--FCQLPHLPFPSSYPMF-VSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (294)
Q Consensus 60 ~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (294)
.. ...+....+......+ .++.++.+.+.+.+... ++.. +++++|+++..++ +.+.|++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~- 148 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQL--YCPARYKEIIRNQ--DYVRVTLDNG-------QQ- 148 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-
Confidence 00 0000000000000112 46788888888888774 6655 8899999998755 5677877653 46
Q ss_pred EeeCEEEEccCCCC
Q 022626 136 YSGRFLVVASGETT 149 (294)
Q Consensus 136 ~~~d~vv~AtG~~~ 149 (294)
+.+|.||.|+|.+|
T Consensus 149 ~~ad~vV~AdG~~S 162 (382)
T TIGR01984 149 LRAKLLIAADGANS 162 (382)
T ss_pred EEeeEEEEecCCCh
Confidence 89999999999765
No 140
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.15 E-value=6.9e-10 Score=99.44 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=79.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecC-CC--CC---------------------CCcCCC------CCCcEEE
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC--YA---------------------SIWKKY------SYDRLRL 56 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~-~~--~g---------------------g~w~~~------~~~~~~~ 56 (294)
.+||+||||||+|+++|..|++.|++|+|+|+. +. ++ |.|..- .+..+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 579999999999999999999999999999986 21 11 112110 0111111
Q ss_pred ecCCcc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCcee
Q 022626 57 HLAKQF--CQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (294)
Q Consensus 57 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (294)
...... ..+....... .+.....+..+...+.+.+.+. ++.. +++++|++++.++ +.+.|+++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v--~~~~~v~~i~~~~--~~~~v~~~~g------- 152 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTL--LMPARCQSIAVGE--SEAWLTLDNG------- 152 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEE--EcCCeeEEEEeeC--CeEEEEECCC-------
Confidence 111100 0010000000 0011124556666666666554 3444 8899999997755 4567777654
Q ss_pred EEEEeeCEEEEccCCCC
Q 022626 133 EEYYSGRFLVVASGETT 149 (294)
Q Consensus 133 ~~~~~~d~vv~AtG~~~ 149 (294)
++ +++|.||.|+|..|
T Consensus 153 ~~-~~a~lvIgADG~~S 168 (405)
T PRK08850 153 QA-LTAKLVVGADGANS 168 (405)
T ss_pred CE-EEeCEEEEeCCCCC
Confidence 46 89999999999765
No 141
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.15 E-value=5.2e-10 Score=100.25 Aligned_cols=162 Identities=23% Similarity=0.250 Sum_probs=100.0
Q ss_pred EEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022626 10 VIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL 87 (294)
Q Consensus 10 vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (294)
++|||+|++|+++|..|.+. +.+++++.++...... +......... .....+.+....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~-----~~~~~~~~~~---------------~~~~~~~~~~~~ 60 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYY-----RCPLSLYVGG---------------GIASLEDLRYPP 60 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCC-----CCccchHHhc---------------ccCCHHHhcccc
Confidence 58999999999999998886 4588888877653211 0000000000 001111111111
Q ss_pred HHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCC
Q 022626 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSAT 167 (294)
Q Consensus 88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~~~ 167 (294)
... ...++.. ..+++|+.++... ..|.+.++ . +.||++++||| +.|..++ +. +
T Consensus 61 ~~~-~~~~i~~--~~~~~v~~id~~~----~~v~~~~g--------~-~~yd~LvlatG--a~~~~~~--~~--~----- 113 (415)
T COG0446 61 RFN-RATGIDV--RTGTEVTSIDPEN----KVVLLDDG--------E-IEYDYLVLATG--ARPRPPP--IS--D----- 113 (415)
T ss_pred hhH-HhhCCEE--eeCCEEEEecCCC----CEEEECCC--------c-ccccEEEEcCC--CcccCCC--cc--c-----
Confidence 112 3445555 8888999886543 45666653 4 78999999999 6666654 11 1
Q ss_pred CCceEEeccCCCCCC-----CCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 168 GTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 168 ~~g~~~~~~~~~~~~-----~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
...........+.. ....++++|||+|..|+++|..+...|.+|++++..+
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~ 169 (415)
T COG0446 114 -WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD 169 (415)
T ss_pred -cCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc
Confidence 11122222222211 1115899999999999999999999999999998885
No 142
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.15 E-value=6.5e-10 Score=99.25 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=78.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhC---CCCeEEEecCCCC-----C------CCcCC--------CCCCc----------E
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCY-----A------SIWKK--------YSYDR----------L 54 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~---g~~v~iie~~~~~-----g------g~w~~--------~~~~~----------~ 54 (294)
.++|+||||||+|+++|..|++. |++|+|+||.... + +++.. ..++. +
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 57999999999999999999998 9999999995211 0 01100 00110 0
Q ss_pred EEecCCccc--cCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCc
Q 022626 55 RLHLAKQFC--QLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (294)
Q Consensus 55 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (294)
......... .+.......... ....+..+.+.+.+.+... ++.. +++++|+++..++ +.|.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~--~~~~~v~~i~~~~--~~~~v~~~~g----- 153 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTL--HCPARVANVERTQ--GSVRVTLDDG----- 153 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 000000000 000000000000 1135566777777666553 4444 8899999987654 6688887654
Q ss_pred eeEEEEeeCEEEEccCCCC
Q 022626 131 EIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 131 ~~~~~~~~d~vv~AtG~~~ 149 (294)
.. +.+|.||.|+|.++
T Consensus 154 --~~-~~a~~vI~AdG~~S 169 (395)
T PRK05732 154 --ET-LTGRLLVAADGSHS 169 (395)
T ss_pred --CE-EEeCEEEEecCCCh
Confidence 46 79999999999755
No 143
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.15 E-value=9.3e-10 Score=98.01 Aligned_cols=135 Identities=16% Similarity=0.109 Sum_probs=78.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC------C-C-CcCC--------C----------CCCcEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY------A-S-IWKK--------Y----------SYDRLRLHLAK 60 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~------g-g-~w~~--------~----------~~~~~~~~~~~ 60 (294)
++||+||||||+|+++|..|++.|++|+|+|+.+.. + + ++.. . ....+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 479999999999999999999999999999998741 1 1 1100 0 01111111111
Q ss_pred ccccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEe-ccCCCCceeEEEEee
Q 022626 61 QFCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYSG 138 (294)
Q Consensus 61 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~ 138 (294)
....+.........+. ...+..+...+.+.+...+... +++.+++.+...+ .....|++. ++ .+.+ +++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~--~~~~~~v~~~~~~-~~~~~V~~~~~g-----~~~~-i~a 152 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTT--VYDADDVRLHDLA-GDRPYVTFERDG-----ERHR-LDC 152 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeE--EEeeeeEEEEecC-CCccEEEEEECC-----eEEE-EEe
Confidence 1111110000000000 1134566666666666666555 8888777765422 234456664 33 2246 899
Q ss_pred CEEEEccCCCCC
Q 022626 139 RFLVVASGETTN 150 (294)
Q Consensus 139 d~vv~AtG~~~~ 150 (294)
|.||.|+|.+|.
T Consensus 153 dlvIGADG~~S~ 164 (390)
T TIGR02360 153 DFIAGCDGFHGV 164 (390)
T ss_pred CEEEECCCCchh
Confidence 999999998773
No 144
>PLN02697 lycopene epsilon cyclase
Probab=99.14 E-value=1.3e-09 Score=99.77 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=81.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC---CCcCCCCCCcEEEe------cCCccccCCCC-CC-CCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKYSYDRLRLH------LAKQFCQLPHL-PF-PSSYP 75 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g---g~w~~~~~~~~~~~------~~~~~~~~~~~-~~-~~~~~ 75 (294)
.+||+||||||+|+++|..|++.|++|+++|+..... |.|... ...+.+. .+.....++.. +. .....
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 5899999999999999999999999999999864332 355321 1000000 00000001000 00 00001
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEE-EEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 76 MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV-KASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
...++..+.+.+.+.+.+.++. .++++|+.+..++ +.+.+ +..++ .+ +.++.||+|+|..+
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~---~~~~~V~~I~~~~--~~~~vv~~~dG-------~~-i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVS---YLSSKVDRITEAS--DGLRLVACEDG-------RV-IPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCE---EEeeEEEEEEEcC--CcEEEEEEcCC-------cE-EECCEEEECCCcCh
Confidence 2367889999999888887765 4677898887654 44443 33332 46 89999999999866
No 145
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.14 E-value=7.5e-10 Score=98.77 Aligned_cols=126 Identities=21% Similarity=0.339 Sum_probs=82.8
Q ss_pred EEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEec-----CCc---------------cccCC----
Q 022626 11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL-----AKQ---------------FCQLP---- 66 (294)
Q Consensus 11 vIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~-----~~~---------------~~~~~---- 66 (294)
+|||||++|++||..|++.|++|+|+||++.+|+.+.... .-+++. ... +..+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG--~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISG--GGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccC--CceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence 6999999999999999999999999999998876432110 001100 000 00000
Q ss_pred -------CCCCC--CC---CCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEE
Q 022626 67 -------HLPFP--SS---YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (294)
Q Consensus 67 -------~~~~~--~~---~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (294)
..++. +. ++......++.+.+.+.+++.++.. ++++.|+++..++ +.|.+++.. ..
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i--~~~~~V~~i~~~~--~~~~v~~~~--------~~ 146 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEI--LTNSKVKSIKKDD--NGFGVETSG--------GE 146 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEecC--CeEEEEECC--------cE
Confidence 00000 00 1111245788888888888888766 8999999997654 567777632 46
Q ss_pred EEeeCEEEEccCCCCCC
Q 022626 135 YYSGRFLVVASGETTNP 151 (294)
Q Consensus 135 ~~~~d~vv~AtG~~~~p 151 (294)
+.+|.||+|+|..+.|
T Consensus 147 -i~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 147 -YEADKVILATGGLSYP 162 (400)
T ss_pred -EEcCEEEECCCCcccC
Confidence 8899999999976654
No 146
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.13 E-value=6.8e-10 Score=98.76 Aligned_cols=132 Identities=13% Similarity=0.158 Sum_probs=77.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC----C---C-----CcCC--------CCCCcE-----------E
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----A---S-----IWKK--------YSYDRL-----------R 55 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~----g---g-----~w~~--------~~~~~~-----------~ 55 (294)
.+||+||||||+|+++|..|++.|++|+|||+.+.. . + ++.. ..++.+ .
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 379999999999999999999999999999987511 1 1 1100 011111 0
Q ss_pred Eec-CCccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCcee
Q 022626 56 LHL-AKQFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (294)
Q Consensus 56 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (294)
... ......+....... .......+..+...+.+.+... ++. ++++++|++++.++ +.+.|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~--~~~~v~~~~g------- 151 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSA--EGNRVTLESG------- 151 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcC--CeEEEEECCC-------
Confidence 000 00000000000000 0011123345555565555544 344 48999999998765 5577888764
Q ss_pred EEEEeeCEEEEccCCCCC
Q 022626 133 EEYYSGRFLVVASGETTN 150 (294)
Q Consensus 133 ~~~~~~d~vv~AtG~~~~ 150 (294)
.+ +++|.||.|+|.+|.
T Consensus 152 ~~-~~~~lvIgADG~~S~ 168 (384)
T PRK08849 152 AE-IEAKWVIGADGANSQ 168 (384)
T ss_pred CE-EEeeEEEEecCCCch
Confidence 46 899999999997664
No 147
>PRK06996 hypothetical protein; Provisional
Probab=99.12 E-value=1.2e-09 Score=97.73 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=84.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC----CCeEEEecCCCCC---------------------CCcCCCCCC--cEEEec
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQS----IPYVILERENCYA---------------------SIWKKYSYD--RLRLHL 58 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g----~~v~iie~~~~~g---------------------g~w~~~~~~--~~~~~~ 58 (294)
..++|+||||||+|+++|..|++.| ++|+++|+.+... |.|.....+ .+....
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 3579999999999999999999987 4699999975321 122221111 111111
Q ss_pred CCc----cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeE
Q 022626 59 AKQ----FCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE 133 (294)
Q Consensus 59 ~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~ 133 (294)
... .....+...+ ... ..++..+.+.|.+.+...++.. .+++++++++.+. ..+++++.+++++ +
T Consensus 90 ~~~~g~~~~~~~~~~~~--~~g~~v~r~~l~~~L~~~~~~~g~~~--~~~~~v~~~~~~~--~~v~v~~~~~~g~----~ 159 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVP--ALGYVVRYGSLVAALARAVRGTPVRW--LTSTTAHAPAQDA--DGVTLALGTPQGA----R 159 (398)
T ss_pred CCCCceEEecccccCCC--cCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeeeeeeecC--CeEEEEECCCCcc----e
Confidence 010 0001111111 112 2477899999999998887654 8899999887654 6688887654321 5
Q ss_pred EEEeeCEEEEccCC
Q 022626 134 EYYSGRFLVVASGE 147 (294)
Q Consensus 134 ~~~~~d~vv~AtG~ 147 (294)
+ +++|.||.|+|.
T Consensus 160 ~-i~a~lvIgADG~ 172 (398)
T PRK06996 160 T-LRARIAVQAEGG 172 (398)
T ss_pred E-EeeeEEEECCCC
Confidence 6 899999999995
No 148
>PRK05868 hypothetical protein; Validated
Probab=99.12 E-value=2.3e-09 Score=94.90 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=77.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC------CcCC------------------CCCCcEEEecCCc--
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK------------------YSYDRLRLHLAKQ-- 61 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg------~w~~------------------~~~~~~~~~~~~~-- 61 (294)
++|+|||||++|+++|..|++.|++|+|+|+.+.... .+.. .......+..+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4899999999999999999999999999999875431 0000 0011111111110
Q ss_pred cccCCC-CCCCCCC--CC-CCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEe
Q 022626 62 FCQLPH-LPFPSSY--PM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (294)
Q Consensus 62 ~~~~~~-~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (294)
...... .+..... +. ...+.++.+.+.+.+ ..++ .++++++|++++.++ +...|++.++ .+ ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v--~i~~~~~v~~i~~~~--~~v~v~~~dg-------~~-~~ 148 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSV--EYLFDDSISTLQDDG--DSVRVTFERA-------AA-RE 148 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCc--EEEeCCEEEEEEecC--CeEEEEECCC-------Ce-EE
Confidence 000000 0000000 00 123556665554322 2243 359999999997644 5677777765 45 78
Q ss_pred eCEEEEccCCCCC
Q 022626 138 GRFLVVASGETTN 150 (294)
Q Consensus 138 ~d~vv~AtG~~~~ 150 (294)
+|.||.|+|.+|.
T Consensus 149 adlvIgADG~~S~ 161 (372)
T PRK05868 149 FDLVIGADGLHSN 161 (372)
T ss_pred eCEEEECCCCCch
Confidence 9999999997764
No 149
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.12 E-value=2.8e-09 Score=100.28 Aligned_cols=144 Identities=20% Similarity=0.211 Sum_probs=86.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC-CCCeEEEecCCCCCC------CcCC-----------------C-CCCcEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYAS------IWKK-----------------Y-SYDRLRLHLAK 60 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~-g~~v~iie~~~~~gg------~w~~-----------------~-~~~~~~~~~~~ 60 (294)
.+++|+||||||+||++|..|++. |++|+|||+.+.... ++.. . ....+....+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 367999999999999999999995 999999999863311 1100 0 00111111110
Q ss_pred -----cccc---CCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCC-CcEEEEEeccCC-C
Q 022626 61 -----QFCQ---LPHLPFP-SSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNLLS-P 128 (294)
Q Consensus 61 -----~~~~---~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~~~-~ 128 (294)
.... +...+.. ..++ ...++..+.+.+.+.+.+.+....+++++++++++.+++. ...+|++++.++ .
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 0000 0000000 0111 1246677888888888877654445899999999876422 346677764310 0
Q ss_pred CceeEEEEeeCEEEEccCCCCC
Q 022626 129 GREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 129 ~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
++++++ +++|+||.|+|.+|.
T Consensus 191 ~g~~~t-v~A~~lVGaDGa~S~ 211 (634)
T PRK08294 191 EGEEET-VRAKYVVGCDGARSR 211 (634)
T ss_pred CCceEE-EEeCEEEECCCCchH
Confidence 002357 899999999997763
No 150
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.11 E-value=1.7e-09 Score=96.76 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=82.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC----C--CcCC--------CC--------C--CcEEEecCCccc
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S--IWKK--------YS--------Y--DRLRLHLAKQFC 63 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g----g--~w~~--------~~--------~--~~~~~~~~~~~~ 63 (294)
.+|+|||||++|+++|..|++.|++|+|+|+.+.+. | ++.. .. + ..+.........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 589999999999999999999999999999987532 1 1100 00 0 001111000000
Q ss_pred ---cCCCCCCCCC-C-CCC--CCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEE
Q 022626 64 ---QLPHLPFPSS-Y-PMF--VSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (294)
Q Consensus 64 ---~~~~~~~~~~-~-~~~--~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (294)
.......... + ..+ .++.++.+.|.+.+... ++.. +++++|++++.++ +.+.+++.+++++ ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v--~~~~~v~~~~~~~--~~v~v~~~~~~~~----~~- 153 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEI--KLGAEMTSQRQTG--NSITATIIRTNSV----ET- 153 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEE--EECCEEEEEecCC--CceEEEEEeCCCC----cE-
Confidence 0000000000 0 112 47788888888877654 4444 9999999997654 5677776543221 46
Q ss_pred EeeCEEEEccCCCCC
Q 022626 136 YSGRFLVVASGETTN 150 (294)
Q Consensus 136 ~~~d~vv~AtG~~~~ 150 (294)
+.+|.||.|+|.+|.
T Consensus 154 ~~adlvIgADG~~S~ 168 (400)
T PRK06475 154 VSAAYLIACDGVWSM 168 (400)
T ss_pred EecCEEEECCCccHh
Confidence 899999999998763
No 151
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.10 E-value=5.7e-10 Score=97.85 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEE-EEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
.+...+...+.+.+++.|+.. +.+++|+++..++ +.|. |.+.+ .. +.+|.||+|+|.++.
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~v~gv~~~~--------g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVEI--RTGTEVTSIDVDG--GRVTGVRTSD--------GE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-EE--EESEEEEEEEEET--TEEEEEEETT--------EE-EEECEEEE--GGGHH
T ss_pred ccccchhhhhHHHHHHhhhhc--cccccccchhhcc--cccccccccc--------cc-cccceeEecccccce
Confidence 356899999999999998776 9999999999876 6787 88877 46 899999999997553
No 152
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.10 E-value=1.1e-09 Score=98.30 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=79.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCC-CCeEEEecCCCCCCC------cCC--------CCCC--------------cEEEec
Q 022626 8 VEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASI------WKK--------YSYD--------------RLRLHL 58 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g-~~v~iie~~~~~gg~------w~~--------~~~~--------------~~~~~~ 58 (294)
.+|+|||||++|+++|..|++.| ++|+|+||.+.++.. +.. ...+ ......
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 599999998765421 111 0000 000000
Q ss_pred -CCccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEE
Q 022626 59 -AKQFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (294)
Q Consensus 59 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (294)
......+.........+ ...++.++.+.+.+.+.. ..++++++|++++.++ +.|.|++.++ .+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~ 146 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE----GIASFGKRATQIEEQA--EEVQVLFTDG-------TE-Y 146 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecC--CcEEEEEcCC-------CE-E
Confidence 00000000000000111 124677777777665432 2348899999998755 5688888764 46 8
Q ss_pred eeCEEEEccCCCCC
Q 022626 137 SGRFLVVASGETTN 150 (294)
Q Consensus 137 ~~d~vv~AtG~~~~ 150 (294)
++|.||.|+|.+|.
T Consensus 147 ~ad~vVgADG~~S~ 160 (414)
T TIGR03219 147 RCDLLIGADGIKSA 160 (414)
T ss_pred EeeEEEECCCccHH
Confidence 99999999998764
No 153
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.04 E-value=1.3e-10 Score=104.54 Aligned_cols=131 Identities=14% Similarity=0.176 Sum_probs=35.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCC---cEEEe------cC----CccccCCCCCCC--CC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD---RLRLH------LA----KQFCQLPHLPFP--SS 73 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~---~~~~~------~~----~~~~~~~~~~~~--~~ 73 (294)
||||||||++|++||..+++.|.+|+|+|+.+.+||......-. ..... .. ..+......+.+ ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 79999999999999999999999999999999999976543211 11100 00 000010000000 00
Q ss_pred C--CCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCC
Q 022626 74 Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (294)
Q Consensus 74 ~--~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~ 147 (294)
+ ....+...+...+.+.+.+.+++. ++++.|.++..++ ...+.|.+.+..+ ..+ +.++.+|.|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v--~~~t~v~~v~~~~-~~i~~V~~~~~~g----~~~-i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV--LLGTRVVDVIRDG-GRITGVIVETKSG----RKE-IRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccc-ccccccccccccc----ccc-cccccccccccc
Confidence 0 013455666777888888788887 9999999998764 3455566654322 157 899999999993
No 154
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.04 E-value=3.3e-10 Score=74.32 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=42.1
Q ss_pred EECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCc
Q 022626 12 MVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61 (294)
Q Consensus 12 IIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~ 61 (294)
|||||++|+++|..|++.|++|+|+|+++.+||.+....++....+....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~ 50 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAH 50 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccE
Confidence 89999999999999999999999999999999998876666666655443
No 155
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.04 E-value=2.6e-09 Score=98.07 Aligned_cols=132 Identities=16% Similarity=0.208 Sum_probs=77.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC-CCCCCcCCCCCCcEE----E---e-cCC--------ccccCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLR----L---H-LAK--------QFCQLPHL 68 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~-~~gg~w~~~~~~~~~----~---~-~~~--------~~~~~~~~ 68 (294)
..+||+|||||+||++||..+++.|.+|+++|++. .+|+........+.. . . ... ...++...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 35899999999999999999999999999999984 555421110000000 0 0 000 00000000
Q ss_pred CC---CCC--CCCCCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEE
Q 022626 69 PF---PSS--YPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (294)
Q Consensus 69 ~~---~~~--~~~~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv 142 (294)
.. |.. .....++..+...+.+.++.. ++. .+.++|+.+..++ .....|.+.++ .. +.++.||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~---I~q~~V~~Li~e~-grV~GV~t~dG-------~~-I~Ak~VI 150 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLD---LFQGEVEDLIVEN-GRVVGVVTQDG-------LE-FRAKAVV 150 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEecC-CEEEEEEECCC-------CE-EECCEEE
Confidence 00 000 011345667777777777765 444 4567788876544 22333556543 56 8999999
Q ss_pred EccCCCC
Q 022626 143 VASGETT 149 (294)
Q Consensus 143 ~AtG~~~ 149 (294)
+|||.+.
T Consensus 151 lATGTFL 157 (618)
T PRK05192 151 LTTGTFL 157 (618)
T ss_pred EeeCcch
Confidence 9999654
No 156
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.02 E-value=6.5e-09 Score=92.19 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
.....+...+.+.+.+.+++. +++++|+++..++ +.|.|.+.+ .+ +.+|+||+|+|.++....+
T Consensus 146 v~p~~~~~~~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~--------g~-~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 146 LRPELAIKAHLRLAREAGAEL--LFNEPVTAIEADG--DGVTVTTAD--------GT-YEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred EcHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEeeC--CeEEEEeCC--------CE-EEeeEEEEecCcchhhhcc
Confidence 345666666666677777665 8899999998755 467777654 25 7899999999986554433
No 157
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.02 E-value=1.3e-08 Score=92.11 Aligned_cols=136 Identities=20% Similarity=0.150 Sum_probs=83.8
Q ss_pred eEEEECCChHHHHHHHHHHhCC-CCeEEEecCCCCCCCcCC--------CC-------C-CcE-------------EEe-
Q 022626 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKK--------YS-------Y-DRL-------------RLH- 57 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g-~~v~iie~~~~~gg~w~~--------~~-------~-~~~-------------~~~- 57 (294)
||+|||+|.+|++||..+++.| .+|+|+||.+..||.-.. .. . ... ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999999877653211 00 0 000 000
Q ss_pred ---------cCCccccCC-CCCC-------------CCC-C--CCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEE
Q 022626 58 ---------LAKQFCQLP-HLPF-------------PSS-Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY 111 (294)
Q Consensus 58 ---------~~~~~~~~~-~~~~-------------~~~-~--~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~ 111 (294)
.+..+..+. ...+ +.. . ........+...+.+.+++.+++. ++++.|+++..
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i--~~~~~v~~l~~ 158 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDT--RLNSKVEDLIQ 158 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEE--EeCCEeeEeEE
Confidence 000000000 1110 000 0 011344678888898999888766 99999999987
Q ss_pred cCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 112 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
+++...+.|...+.+. .... +.++.||+|+|.++.
T Consensus 159 ~~~g~v~Gv~~~~~~g---~~~~-~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 159 DDQGTVVGVVVKGKGK---GIYI-KAAKAVVLATGGFGS 193 (439)
T ss_pred CCCCcEEEEEEEeCCC---eEEE-EecceEEEecCCCCC
Confidence 5433344454443221 2245 789999999997665
No 158
>PLN02661 Putative thiazole synthesis
Probab=99.01 E-value=2.8e-09 Score=91.55 Aligned_cols=136 Identities=18% Similarity=0.223 Sum_probs=77.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhC-CCCeEEEecCCCCCC-CcCCCCCC-cEEEecC-CccccCCCCCCCCCCCCCC---C
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYAS-IWKKYSYD-RLRLHLA-KQFCQLPHLPFPSSYPMFV---S 79 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~-g~~v~iie~~~~~gg-~w~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~---~ 79 (294)
.+||+|||||++|++||+.|++. |++|+++|+...+|| .|....+- ...+..+ ..+..--..++... ..|+ +
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~-dgy~vv~h 170 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ-ENYVVIKH 170 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC-CCeeEecc
Confidence 57999999999999999999986 899999999988765 66543211 1111111 01111112222221 1221 3
Q ss_pred HHHHHHHHHHHHHH-cCCCceeeeCcEEEEEEEcCCCCcEEEE------EeccCCCC-ceeEEEEeeCEEEEccCC
Q 022626 80 RAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVK------ASNLLSPG-REIEEYYSGRFLVVASGE 147 (294)
Q Consensus 80 ~~~~~~~l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~------~~~~~~~~-~~~~~~~~~d~vv~AtG~ 147 (294)
..++...+.+.+.+ .++.. +.++.++++..++ +...-|. ..++.++. .+... +.+++||+|||+
T Consensus 171 a~e~~stLi~ka~~~~gVkI--~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~-I~AkaVVlATGh 242 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKL--FNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNV-MEAKVVVSSCGH 242 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEE--EeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeE-EECCEEEEcCCC
Confidence 34454555554443 45554 8888888886654 2222222 22211100 01246 899999999995
No 159
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.99 E-value=9.2e-09 Score=70.01 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=65.1
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLD 88 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (294)
+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. .-.+++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~---------------------------------~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP---------------------------------GFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST---------------------------------TSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh---------------------------------hcCHHHHHHHH
Confidence 689999999999999999999999999999886431 11246778888
Q ss_pred HHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEecc
Q 022626 89 HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL 125 (294)
Q Consensus 89 ~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~ 125 (294)
+..++.+++. ++++.++++..+++. .+|++++|
T Consensus 48 ~~l~~~gV~v--~~~~~v~~i~~~~~~--~~V~~~~g 80 (80)
T PF00070_consen 48 EYLRKRGVEV--HTNTKVKEIEKDGDG--VEVTLEDG 80 (80)
T ss_dssp HHHHHTTEEE--EESEEEEEEEEETTS--EEEEEETS
T ss_pred HHHHHCCCEE--EeCCEEEEEEEeCCE--EEEEEecC
Confidence 8888888777 999999999987732 55777653
No 160
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.98 E-value=9e-09 Score=91.40 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
.+...+...+.+.++..++.. +.+++|+++..++ +.+.|.+.+ .+ +.+|+||+|+|.++.
T Consensus 142 i~p~~~~~~l~~~~~~~g~~~--~~~~~V~~i~~~~--~~~~v~~~~--------~~-i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 142 LYAEKALRALQELAEAHGATV--RDGTKVVEIEPTE--LLVTVKTTK--------GS-YQANKLVVTAGAWTS 201 (380)
T ss_pred EcHHHHHHHHHHHHHHcCCEE--ECCCeEEEEEecC--CeEEEEeCC--------CE-EEeCEEEEecCcchH
Confidence 355677778888888888765 8889999997654 557676644 35 789999999997644
No 161
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.97 E-value=8.2e-09 Score=91.11 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=77.3
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCCC--CcCCCCCCc-----------EEEecCCccccCCCCCCCCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS--IWKKYSYDR-----------LRLHLAKQFCQLPHLPFPSS 73 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~gg--~w~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 73 (294)
||+|||||+||+++|..|.+. |++|+++|+.+..++ +|..-...- +...-+.....++.......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 699999999999999999987 999999999987776 443211100 00000000000110000000
Q ss_pred -CCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022626 74 -YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 74 -~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~ 152 (294)
.....++.++.+++.+.+ +.. +.++++|++++ . +. |++.++ .+ ++++.||.|+|..+.+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~--~--~~--v~l~dg-------~~-~~A~~VI~A~G~~s~~~ 141 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLD--A--DG--VDLAPG-------TR-INARSVIDCRGFKPSAH 141 (370)
T ss_pred CCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEe--C--CE--EEECCC-------CE-EEeeEEEECCCCCCCcc
Confidence 012236677777765433 222 47788998883 2 23 444443 56 89999999999654222
Q ss_pred CCCCCCcccc
Q 022626 153 TPDIRGLCSF 162 (294)
Q Consensus 153 ~p~i~g~~~~ 162 (294)
...|...|
T Consensus 142 --~~~~~Q~f 149 (370)
T TIGR01789 142 --LKGGFQVF 149 (370)
T ss_pred --ccceeeEE
Confidence 22455555
No 162
>PLN02985 squalene monooxygenase
Probab=98.96 E-value=3e-08 Score=91.05 Aligned_cols=137 Identities=20% Similarity=0.209 Sum_probs=77.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC----C---------------CcCC------CCCCcEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S---------------IWKK------YSYDRLRLHLAK 60 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g----g---------------~w~~------~~~~~~~~~~~~ 60 (294)
..+||+|||||++|+++|..|++.|++|+|+||..... | .|.. .....+......
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g 121 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDG 121 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECC
Confidence 45799999999999999999999999999999975311 1 1110 001111111111
Q ss_pred c--cccCCCCC--CCCCC-CCCCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEE
Q 022626 61 Q--FCQLPHLP--FPSSY-PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (294)
Q Consensus 61 ~--~~~~~~~~--~~~~~-~~~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (294)
. ...++... .+... ....++.++.+.+.+.+.+. ++.. ..+ +++++..++ +....|++...++ ++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i--~~g-tvv~li~~~-~~v~gV~~~~~dG---~~~~ 194 (514)
T PLN02985 122 KEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRL--EEG-TVKSLIEEK-GVIKGVTYKNSAG---EETT 194 (514)
T ss_pred EEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEE--Eee-eEEEEEEcC-CEEEEEEEEcCCC---CEEE
Confidence 1 01111100 00000 11246778888888888766 3433 444 566664433 2222344432211 2245
Q ss_pred EEeeCEEEEccCCCCC
Q 022626 135 YYSGRFLVVASGETTN 150 (294)
Q Consensus 135 ~~~~d~vv~AtG~~~~ 150 (294)
+.+|.||.|+|.+|.
T Consensus 195 -~~AdLVVgADG~~S~ 209 (514)
T PLN02985 195 -ALAPLTVVCDGCYSN 209 (514)
T ss_pred -EECCEEEECCCCchH
Confidence 789999999997763
No 163
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.96 E-value=2.3e-08 Score=91.92 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=86.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC--------CC-----------------------Cc
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------SY-----------------------DR 53 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~--------~~-----------------------~~ 53 (294)
...+||+|||||+.|+++|+.|+++|++|+|+|+.+..+|+-..+ .| +.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~ 83 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH 83 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence 345899999999999999999999999999999997655422110 00 00
Q ss_pred ----EEEecC---Ccc-----------cc-CC---CCC------C-------C--CC-------CCCCCCHHHHHHHHHH
Q 022626 54 ----LRLHLA---KQF-----------CQ-LP---HLP------F-------P--SS-------YPMFVSRAQFIEHLDH 89 (294)
Q Consensus 54 ----~~~~~~---~~~-----------~~-~~---~~~------~-------~--~~-------~~~~~~~~~~~~~l~~ 89 (294)
+.+..+ ... +. +. ..+ . + .. .....+...+...+..
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~~ 163 (502)
T PRK13369 84 IIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNAL 163 (502)
T ss_pred cccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHHH
Confidence 000000 000 00 00 000 0 0 00 0011244566666777
Q ss_pred HHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 90 YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 90 ~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
.+.+.|... +.+++|+++..++ +.|.|.+.++. + ++.+ +.++.||.|+|.++.
T Consensus 164 ~a~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~-g--~~~~-i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 164 DAAERGATI--LTRTRCVSARREG--GLWRVETRDAD-G--ETRT-VRARALVNAAGPWVT 216 (502)
T ss_pred HHHHCCCEE--ecCcEEEEEEEcC--CEEEEEEEeCC-C--CEEE-EEecEEEECCCccHH
Confidence 778888766 8889999998754 56888776643 2 3357 899999999998663
No 164
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.96 E-value=2.2e-08 Score=92.04 Aligned_cols=39 Identities=13% Similarity=0.333 Sum_probs=35.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..+||+|||||+.|+++|+.|++.|++|+|+||++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 458999999999999999999999999999999876554
No 165
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.95 E-value=1.6e-08 Score=90.36 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 79 ~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
+...+...+.+.+++.++.. +++++|.++..++ +.|.|.+.+ .+ +.+|.||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~--------g~-i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEI--RLGAEVTALDEHA--NGVVVRTTQ--------GE-YEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEecC--CeEEEEECC--------CE-EEeCEEEECCCcch
Confidence 45777788888888888765 8899999987654 557776654 35 89999999999765
No 166
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.94 E-value=5.3e-08 Score=89.62 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=35.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
.+||||||+|.+|++||..+++.|.+|+|+||.+..||
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 57999999999999999999999999999999998776
No 167
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.94 E-value=5.1e-09 Score=91.35 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=74.6
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEE-ecCCCCCCCcCCCCCCcEEEecC----Ccc---------------ccCC--
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVIL-ERENCYASIWKKYSYDRLRLHLA----KQF---------------CQLP-- 66 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~ii-e~~~~~gg~w~~~~~~~~~~~~~----~~~---------------~~~~-- 66 (294)
||+|||||.||+.||..+++.|.+|+++ .+.+.++.+ .|.+++.-... .++ .++.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~---~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEM---SCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT-----SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccc---cchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 7999999999999999999999999999 444545443 22222221100 000 0000
Q ss_pred ---CCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEE
Q 022626 67 ---HLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (294)
Q Consensus 67 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~ 143 (294)
.-|.........++..+..++++.++....-. ....+|+++..++ ...+.|.+.++ .. +.+|.||+
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~--i~~~~V~~l~~e~-~~v~GV~~~~g-------~~-~~a~~vVl 146 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLT--IIQGEVTDLIVEN-GKVKGVVTKDG-------EE-IEADAVVL 146 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE--EEES-EEEEEECT-TEEEEEEETTS-------EE-EEECEEEE
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeE--EEEcccceEEecC-CeEEEEEeCCC-------CE-EecCEEEE
Confidence 00100011123588999999999998853222 4567899997765 34566777664 67 89999999
Q ss_pred ccCC
Q 022626 144 ASGE 147 (294)
Q Consensus 144 AtG~ 147 (294)
|||.
T Consensus 147 aTGt 150 (392)
T PF01134_consen 147 ATGT 150 (392)
T ss_dssp -TTT
T ss_pred eccc
Confidence 9994
No 168
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.93 E-value=7.7e-08 Score=87.95 Aligned_cols=105 Identities=17% Similarity=0.231 Sum_probs=75.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|++|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT--EDAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc--CCHHHHHH
Confidence 5799999999999999999999999999999887531 00 12356667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. +++++|+++......+...+...++ .+.+ +.+|.||+|+| .+|+.+
T Consensus 227 l~~~l~~~gI~i--~~~~~v~~i~~~~~~~~~~~~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~ 284 (472)
T PRK05976 227 VARLLKKLGVRV--VTGAKVLGLTLKKDGGVLIVAEHNG-----EEKT-LEADKVLVSVG--RRPNTE 284 (472)
T ss_pred HHHHHHhcCCEE--EeCcEEEEEEEecCCCEEEEEEeCC-----ceEE-EEeCEEEEeeC--CccCCC
Confidence 777777778776 9999999987521123222333333 2256 89999999999 666654
No 169
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.89 E-value=1.1e-07 Score=86.76 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=77.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+. +. ...++...
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------PG--EDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------CC--CCHHHHHH
Confidence 5799999999999999999999999999999987531 00 11356667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. +++++|++++.++ +...+...++ ...+ +.+|.||+|+| ..|+..
T Consensus 217 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 217 VAKALKKKGVKI--LTNTKVTAVEKND--DQVVYENKGG-----ETET-LTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEeCC-----cEEE-EEeCEEEEecC--CcccCC
Confidence 777777777666 9999999997654 4455555433 1146 89999999999 666554
No 170
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.89 E-value=3.7e-08 Score=92.03 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=78.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC--CC-CCcCC--------------------------CCCCcEEE
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC--YA-SIWKK--------------------------YSYDRLRL 56 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~--~g-g~w~~--------------------------~~~~~~~~ 56 (294)
.+.+|+|||||++|+++|..|++.|++|+||||.+. .+ |.+.. ......+.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 457999999999999999999999999999999752 11 11110 00000000
Q ss_pred e---c---CCccccCCCCCCCCC--CC--CCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccC
Q 022626 57 H---L---AKQFCQLPHLPFPSS--YP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL 126 (294)
Q Consensus 57 ~---~---~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~ 126 (294)
. . ......+........ .+ ...++.++.+.|.+. .+.. .++++++|++++.++ +.++|++.++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~--d~VtV~~~dG- 232 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGED-VIRNESNVVDFEDSG--DKVTVVLENG- 232 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC--CEEEEEECCC-
Confidence 0 0 000011111110001 11 124677777777443 3322 347888999997654 5677777664
Q ss_pred CCCceeEEEEeeCEEEEccCCCC
Q 022626 127 SPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 127 ~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
.+ +.+|.||.|.|.+|
T Consensus 233 ------~t-i~aDlVVGADG~~S 248 (668)
T PLN02927 233 ------QR-YEGDLLVGADGIWS 248 (668)
T ss_pred ------CE-EEcCEEEECCCCCc
Confidence 46 78999999999876
No 171
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.88 E-value=3.7e-08 Score=91.41 Aligned_cols=137 Identities=17% Similarity=0.220 Sum_probs=82.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCC-------CCC--------------------------
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKY-------SYD-------------------------- 52 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg-~w~~~-------~~~-------------------------- 52 (294)
.+||+|||||..|+++|+.|++.|++|+|+|+.+...| +++.. .|.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~~ 85 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVE 85 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhhc
Confidence 58999999999999999999999999999999764433 22210 110
Q ss_pred ---cEEEecCC-cc---------ccCCCCC------------CCC---C-------CCCCCCHHHHHHHHHHHHHHcCCC
Q 022626 53 ---RLRLHLAK-QF---------CQLPHLP------------FPS---S-------YPMFVSRAQFIEHLDHYVSHFNIG 97 (294)
Q Consensus 53 ---~~~~~~~~-~~---------~~~~~~~------------~~~---~-------~~~~~~~~~~~~~l~~~~~~~~l~ 97 (294)
++.+..+. .. ......+ .|. . .....+...+...+...+.+.|..
T Consensus 86 ~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~~Ga~ 165 (546)
T PRK11101 86 PTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAQ 165 (546)
T ss_pred ccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHhCCCE
Confidence 00000000 00 0000000 000 0 001235566666666777888877
Q ss_pred ceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 98 PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 98 ~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
. .++++|+++..++ +..+.|.+.+..++ +..+ +.++.||+|+|.++
T Consensus 166 i--~~~t~V~~i~~~~-~~v~gv~v~d~~~g--~~~~-i~A~~VVnAaG~wa 211 (546)
T PRK11101 166 I--LTYHEVTGLIREG-DTVCGVRVRDHLTG--ETQE-IHAPVVVNAAGIWG 211 (546)
T ss_pred E--EeccEEEEEEEcC-CeEEEEEEEEcCCC--cEEE-EECCEEEECCChhH
Confidence 6 8999999998754 23344655432221 1246 89999999999765
No 172
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.88 E-value=4.6e-08 Score=89.90 Aligned_cols=132 Identities=13% Similarity=0.146 Sum_probs=78.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC-CcCCCCCCc-----EE--EecC---------CccccCCCC--
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDR-----LR--LHLA---------KQFCQLPHL-- 68 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg-~w~~~~~~~-----~~--~~~~---------~~~~~~~~~-- 68 (294)
+||+|||||++|+.+|..+++.|.+|+++|++....| +...+...+ +. +... ....++...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 5899999999999999999999999999998753322 111000000 00 0000 000001111
Q ss_pred ---CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEcc
Q 022626 69 ---PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS 145 (294)
Q Consensus 69 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~At 145 (294)
|.........++..+..++++.+++.+... .+..+|+.+..++++....|.+.++ .. +.++.||+||
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~--Ile~~Vv~li~e~~g~V~GV~t~~G-------~~-I~Ad~VILAT 150 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLS--LFQGEVEDLILEDNDEIKGVVTQDG-------LK-FRAKAVIITT 150 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE--EEEeEEEEEEEecCCcEEEEEECCC-------CE-EECCEEEEcc
Confidence 100000123577788888888888774222 4556777775543234455666553 46 8999999999
Q ss_pred CCCC
Q 022626 146 GETT 149 (294)
Q Consensus 146 G~~~ 149 (294)
|.+.
T Consensus 151 GtfL 154 (617)
T TIGR00136 151 GTFL 154 (617)
T ss_pred Cccc
Confidence 9764
No 173
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.88 E-value=2.8e-08 Score=83.26 Aligned_cols=145 Identities=19% Similarity=0.321 Sum_probs=95.6
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC--C---------------------------CcCCC-C
Q 022626 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S---------------------------IWKKY-S 50 (294)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g--g---------------------------~w~~~-~ 50 (294)
|+++....+|+|||||..|+++|++|++.|.++.++|+.+.+- | .|+.. .
T Consensus 1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence 3445556799999999999999999999999999999977331 1 11110 0
Q ss_pred CCcEE-------Ee--------------------------cCCc-cccCC-CCCCCCCCC-------CCCCHHHHHHHHH
Q 022626 51 YDRLR-------LH--------------------------LAKQ-FCQLP-HLPFPSSYP-------MFVSRAQFIEHLD 88 (294)
Q Consensus 51 ~~~~~-------~~--------------------------~~~~-~~~~~-~~~~~~~~~-------~~~~~~~~~~~l~ 88 (294)
..+.. +. .+.+ -..|+ ..++++++. ++........-++
T Consensus 81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~ 160 (399)
T KOG2820|consen 81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ 160 (399)
T ss_pred hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence 00000 00 0000 01244 445565543 3456678888899
Q ss_pred HHHHHcCCCceeeeCcEEEEEEEcCCCC-cEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022626 89 HYVSHFNIGPSIRYQRSVESASYDEATN-MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (294)
Q Consensus 89 ~~~~~~~l~~~i~~~~~V~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~ 155 (294)
..+.+.|... +.+..|..+...+..+ ...|.+.++ .. |.++++|+++|+|-...+|.
T Consensus 161 ~~~~~~G~i~--~dg~~v~~~~~~~e~~~~v~V~Tt~g-------s~-Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 161 DKARELGVIF--RDGEKVKFIKFVDEEGNHVSVQTTDG-------SI-YHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHcCeEE--ecCcceeeEeeccCCCceeEEEeccC-------Ce-eecceEEEEecHHHHhhcCc
Confidence 9999999877 9999998887654333 344555543 56 89999999999876666653
No 174
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.88 E-value=8.3e-08 Score=87.64 Aligned_cols=134 Identities=16% Similarity=0.266 Sum_probs=79.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC--CCCCcCCCCCCcEEEe------------cCCccc---------
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC--YASIWKKYSYDRLRLH------------LAKQFC--------- 63 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~--~gg~w~~~~~~~~~~~------------~~~~~~--------- 63 (294)
.+||+|||+|++|++||..+++.|.+|+|+||.+. .||.-.... ++... .+..+.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTR--NLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCC--ceeeeCCCchhhccccccHHHHHHHHHHhhCC
Confidence 57999999999999999999999999999999873 454211100 00000 000000
Q ss_pred -------------------cC--CCCCCCCCCC--C---------CCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEE
Q 022626 64 -------------------QL--PHLPFPSSYP--M---------FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY 111 (294)
Q Consensus 64 -------------------~~--~~~~~~~~~~--~---------~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~ 111 (294)
.+ ...++..... . ......+...+.+.+++.+++. +++++|+++..
T Consensus 82 ~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i--~~~t~v~~l~~ 159 (466)
T PRK08274 82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEI--RYDAPVTALEL 159 (466)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEE--EcCCEEEEEEe
Confidence 00 0001100000 0 0013567777888888888766 99999999976
Q ss_pred cCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 112 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
++ .....|.....+. .... +.++.||+|||.+.
T Consensus 160 ~~-g~v~gv~~~~~~g---~~~~-i~a~~VIlAtGg~~ 192 (466)
T PRK08274 160 DD-GRFVGARAGSAAG---GAER-IRAKAVVLAAGGFE 192 (466)
T ss_pred cC-CeEEEEEEEccCC---ceEE-EECCEEEECCCCCC
Confidence 43 2333344432111 2256 78999999999654
No 175
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.88 E-value=3.8e-08 Score=89.63 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHH----cCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 78 VSRAQFIEHLDHYVSH----FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 78 ~~~~~~~~~l~~~~~~----~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
.+...+...+.+.+++ .|....++++++|+++.... ++.|.|.+.+ .+ +.+|+||+|+|.++.
T Consensus 208 Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~--------G~-i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 208 VDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR--------GE-IRARFVVVSACGYSL 274 (497)
T ss_pred ECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC--------CE-EEeCEEEECcChhHH
Confidence 3556777777777777 66445559999999998763 3578888765 35 899999999997764
No 176
>PRK07121 hypothetical protein; Validated
Probab=98.87 E-value=1.1e-07 Score=87.38 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=35.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
.+||+|||+|.+|++||..+++.|.+|+|+||.+..||
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 57999999999999999999999999999999987766
No 177
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.87 E-value=2.9e-08 Score=94.36 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
.+...+...+.+.++. ++.. +++++|+++...+ +.|.|.+.++ .. +.+|.||+|+|.++.
T Consensus 405 v~p~~l~~aL~~~a~~-Gv~i--~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 405 LCPAELCRALLALAGQ-QLTI--HFGHEVARLERED--DGWQLDFAGG-------TL-ASAPVVVLANGHDAA 464 (662)
T ss_pred eCHHHHHHHHHHhccc-CcEE--EeCCEeeEEEEeC--CEEEEEECCC-------cE-EECCEEEECCCCCcc
Confidence 3555666666666666 6555 8899999998755 5788776553 45 689999999998664
No 178
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.87 E-value=9.7e-08 Score=85.75 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 79 ~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
+...+...+.+.+++.|++. +.+++|++++.++ +.|.+.+.+++.. +..+ +.+|+||+|+|.++.
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~--~~~~-i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQF--RYGQEVTSIKTDG--GGVVLTVQPSAEH--PSRT-LEFDGVVVCAGVGSR 259 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEEEcCCCC--ccce-EecCEEEECCCcChH
Confidence 34466666777777788766 8889999997654 5677765543210 0136 899999999997653
No 179
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.86 E-value=4.2e-08 Score=88.25 Aligned_cols=135 Identities=18% Similarity=0.219 Sum_probs=78.8
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC-------C--C-------CcEE-------------Ee--
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-------S--Y-------DRLR-------------LH-- 57 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~-------~--~-------~~~~-------------~~-- 57 (294)
||+|||+|.+|++||..++++|.+|+|+||.+..||.-... . . ++.. .+
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 79999999999999999999999999999999877622110 0 0 0000 00
Q ss_pred --------cC---CccccCCCCCCCC----------------C------CC-----CCCCHHHHHHHHHHHHHHcCCCce
Q 022626 58 --------LA---KQFCQLPHLPFPS----------------S------YP-----MFVSRAQFIEHLDHYVSHFNIGPS 99 (294)
Q Consensus 58 --------~~---~~~~~~~~~~~~~----------------~------~~-----~~~~~~~~~~~l~~~~~~~~l~~~ 99 (294)
.+ ..+... ..++.. . .. .......+...+.+.+++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i- 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEEL-GVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDI- 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHT-T--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEE-
T ss_pred hhhhhhhcccceehhhhhh-cccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeee-
Confidence 00 000000 000000 0 00 11256788888999999998665
Q ss_pred eeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 100 IRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 100 i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
++++.++++..++ ...--+...+..++ ...+ +.++.||+|||.+..
T Consensus 159 -~~~~~~~~Li~e~-g~V~Gv~~~~~~~g--~~~~-i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 -RFNTRVTDLITED-GRVTGVVAENPADG--EFVR-IKAKAVILATGGFGG 204 (417)
T ss_dssp -EESEEEEEEEEET-TEEEEEEEEETTTC--EEEE-EEESEEEE----BGG
T ss_pred -eccceeeeEEEeC-CceeEEEEEECCCC--eEEE-EeeeEEEeccCcccc
Confidence 9999999998865 23333445422222 3356 899999999996654
No 180
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.86 E-value=3.3e-08 Score=87.37 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=86.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCC--------CC-C-----------------------
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKK--------YS-Y----------------------- 51 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g--~~v~iie~~~~~gg~w~~--------~~-~----------------------- 51 (294)
.++||+|||||..|+++|+.|.++. .+|+|+||.+.++..-.. .. |
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999998 999999999977631111 00 0
Q ss_pred --------CcEEEecCCc--------cccCCCCCCC-----------CC---------------CCCCCCHHHHHHHHHH
Q 022626 52 --------DRLRLHLAKQ--------FCQLPHLPFP-----------SS---------------YPMFVSRAQFIEHLDH 89 (294)
Q Consensus 52 --------~~~~~~~~~~--------~~~~~~~~~~-----------~~---------------~~~~~~~~~~~~~l~~ 89 (294)
+.+.+-.... +........+ .. ....++..++...+.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 1111100000 0000000000 00 0122355677777788
Q ss_pred HHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 90 YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 90 ~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
.++..+... +++++|+.+++..+ +.+.+.+.+++ ++ ++++.||.|.|.++.
T Consensus 162 ~a~~~g~~i--~ln~eV~~i~~~~d-g~~~~~~~~g~------~~-~~ak~Vin~AGl~Ad 212 (429)
T COG0579 162 EAQANGVEL--RLNTEVTGIEKQSD-GVFVLNTSNGE------ET-LEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHcCCEE--EecCeeeEEEEeCC-ceEEEEecCCc------EE-EEeeEEEECCchhHH
Confidence 888888777 99999999998772 25556666542 45 799999999997664
No 181
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.86 E-value=5.9e-08 Score=87.03 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=83.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHH
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (294)
..|.+++|||||+.|+..|..+.+.|.+|||+|+.+.+-- .-.+++.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp---------------------------------~~D~ei~ 217 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP---------------------------------GEDPEIS 217 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC---------------------------------cCCHHHH
Confidence 3578999999999999999999999999999999886320 1234788
Q ss_pred HHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCC
Q 022626 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI 156 (294)
Q Consensus 85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i 156 (294)
+.+.+..++.++.. ++++.++.++..+ +...++++++.+ .. +.+|.|++|+| .+|+...+
T Consensus 218 ~~~~~~l~~~gv~i--~~~~~v~~~~~~~--~~v~v~~~~g~~-----~~-~~ad~vLvAiG--R~Pn~~~L 277 (454)
T COG1249 218 KELTKQLEKGGVKI--LLNTKVTAVEKKD--DGVLVTLEDGEG-----GT-IEADAVLVAIG--RKPNTDGL 277 (454)
T ss_pred HHHHHHHHhCCeEE--EccceEEEEEecC--CeEEEEEecCCC-----CE-EEeeEEEEccC--CccCCCCC
Confidence 88888888866665 8999999987765 336677766532 26 78999999999 77776643
No 182
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.86 E-value=3.4e-08 Score=87.26 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=32.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
+||+|||||++|+++|++|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999864
No 183
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.86 E-value=2.2e-07 Score=84.79 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=77.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ..+++...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------PR--EEPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------------------Cc--cCHHHHHH
Confidence 4799999999999999999999999999999876431 00 01355667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. +++++|+.++.++ +...+.+...++. ++ +.+|.||+|+| .+|+..
T Consensus 213 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~----~~-i~~D~ViiA~G--~~p~~~ 269 (463)
T TIGR02053 213 VEEALAEEGIEV--VTSAQVKAVSVRG--GGKIITVEKPGGQ----GE-VEADELLVATG--RRPNTD 269 (463)
T ss_pred HHHHHHHcCCEE--EcCcEEEEEEEcC--CEEEEEEEeCCCc----eE-EEeCEEEEeEC--CCcCCC
Confidence 777777777766 9999999997654 3455555432111 57 89999999999 666654
No 184
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.85 E-value=3.1e-08 Score=90.18 Aligned_cols=60 Identities=7% Similarity=0.033 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022626 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 79 ~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~ 152 (294)
+...+...+.+.+++.|++. +.++.|++++. .+.|.|.+.+ .+ +.+|+||+|+|.++...
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~i--~~~t~V~~i~~---~~~~~v~t~~--------g~-v~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVEI--HENTPMTGLEE---GQPAVVRTPD--------GQ-VTADKVVLALNAWMASH 240 (460)
T ss_pred CHHHHHHHHHHHHHHcCCEE--ECCCeEEEEee---CCceEEEeCC--------cE-EECCEEEEccccccccc
Confidence 55667777777888888776 88999999874 2457777654 35 79999999999876543
No 185
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.84 E-value=2e-08 Score=86.28 Aligned_cols=142 Identities=18% Similarity=0.252 Sum_probs=86.4
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHhC------CCCeEEEecCCCCCCCcCCC----------CC---------------
Q 022626 3 EQAAGVEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASIWKKY----------SY--------------- 51 (294)
Q Consensus 3 ~~~~~~~vvIIGaG~aGl~aA~~L~~~------g~~v~iie~~~~~gg~w~~~----------~~--------------- 51 (294)
+....+||+|||||||||+||.+|.++ .++|+++||...+||.--.. ..
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT 151 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVT 151 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccccc
Confidence 334568999999999999999999875 46899999999999832110 01
Q ss_pred -CcEEEecCCccccCCCC-CCCCCCCCC-CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccC--
Q 022626 52 -DRLRLHLAKQFCQLPHL-PFPSSYPMF-VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL-- 126 (294)
Q Consensus 52 -~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~-- 126 (294)
+.+.+...+.....+-. |+. +-.+| ++-.++..|+-+.++.+|++. .-+-.+..+-.++++...-|.+.+.+
T Consensus 152 ~d~~~fLt~~~~i~vPv~~pm~-NhGNYvv~L~~~v~wLg~kAEe~GvEi--yPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 152 SDKFKFLTGKGRISVPVPSPMD-NHGNYVVSLGQLVRWLGEKAEELGVEI--YPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred ccceeeeccCceeecCCCcccc-cCCcEEEEHHHHHHHHHHHHHhhCcee--ccccchhheeEcCCCcEeeEeecccccc
Confidence 11112222222222111 111 11233 477899999999999999886 55555555555554444445444321
Q ss_pred ----CCCc--eeEEEEeeCEEEEccCCC
Q 022626 127 ----SPGR--EIEEYYSGRFLVVASGET 148 (294)
Q Consensus 127 ----~~~~--~~~~~~~~d~vv~AtG~~ 148 (294)
..++ +.-. +.++.-|.|-|.+
T Consensus 229 k~G~pKd~FerGme-~hak~TifAEGc~ 255 (621)
T KOG2415|consen 229 KDGAPKDTFERGME-FHAKVTIFAEGCH 255 (621)
T ss_pred CCCCccccccccce-ecceeEEEecccc
Confidence 0000 1135 6788889998843
No 186
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.84 E-value=8.7e-08 Score=85.06 Aligned_cols=100 Identities=12% Similarity=0.173 Sum_probs=76.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+ ..+++..+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~-~~~~~~~~ 188 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------SL-MPPEVSSR 188 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------hh-CCHHHHHH
Confidence 46899999999999999999999999999998764310 00 01345567
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~ 152 (294)
+.+..++.++.. +++++|+++..++ +.+.+.+.++ .+ +.+|.||+|+| ..|+
T Consensus 189 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vI~a~G--~~p~ 240 (377)
T PRK04965 189 LQHRLTEMGVHL--LLKSQLQGLEKTD--SGIRATLDSG-------RS-IEVDAVIAAAG--LRPN 240 (377)
T ss_pred HHHHHHhCCCEE--EECCeEEEEEccC--CEEEEEEcCC-------cE-EECCEEEECcC--CCcc
Confidence 777777788766 8899999987644 5677777654 56 89999999999 4443
No 187
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.83 E-value=2.4e-07 Score=84.56 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=78.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ..+++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHH
Confidence 5799999999999999999999999999999977531 00 11356677
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.++.. +++++|++++.++ +.+.+.+.+++ .+++ +.+|.||+|+| .+|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~gg----~~~~-i~~D~vi~a~G--~~p~~~ 275 (462)
T PRK06416 219 AERALKKRGIKI--KTGAKAKKVEQTD--DGVTVTLEDGG----KEET-LEADYVLVAVG--RRPNTE 275 (462)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEEeCC----eeEE-EEeCEEEEeeC--CccCCC
Confidence 777777777666 9999999997654 35556554431 2256 89999999999 666544
No 188
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.83 E-value=1.3e-07 Score=85.97 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=33.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA 43 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~g 43 (294)
..+||+|||||++|+++|..|++. +.+|+|+||.+.++
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 357999999999999999999998 89999999944444
No 189
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.81 E-value=3e-07 Score=83.72 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=75.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~~--~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------PG--EDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------cc--ccHHHHHH
Confidence 5799999999999999999999999999999876421 00 12356677
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. +++++|++++.+. ....+.. ++ ...+ +.+|.|++|+| ..|+..
T Consensus 217 l~~~L~~~GI~i--~~~~~V~~i~~~~--~~v~~~~-~g-----~~~~-i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 217 LREKLENDGVKI--FTGAALKGLNSYK--KQALFEY-EG-----SIQE-VNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEcC--CEEEEEE-CC-----ceEE-EEeCEEEEecC--CccCCC
Confidence 777777778766 8999999987543 3333332 21 1246 89999999999 666654
No 190
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=98.81 E-value=5.8e-09 Score=84.23 Aligned_cols=152 Identities=17% Similarity=0.281 Sum_probs=94.0
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|||||+||.++|..|+++ ..+++++-..+.+-.. ..-..+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksv--------------------------------tn~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV--------------------------------TNYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH--------------------------------hhHHHHHHH
Confidence 468999999999999999987 4578888776642111 011223333
Q ss_pred HHHHHHHcCCCc---e---eeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcc
Q 022626 87 LDHYVSHFNIGP---S---IRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC 160 (294)
Q Consensus 87 l~~~~~~~~l~~---~---i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~ 160 (294)
+.+ |++.. + -.|..-+.++.. -+..+..++++++ .. +.|++|++|+| ..|.... +|.
T Consensus 49 lek----fdv~eq~~~elg~~f~~~~~~v~~-~~s~ehci~t~~g-------~~-~ky~kKOG~tg--~kPklq~-E~~- 111 (334)
T KOG2755|consen 49 LEK----FDVKEQNCHELGPDFRRFLNDVVT-WDSSEHCIHTQNG-------EK-LKYFKLCLCTG--YKPKLQV-EGI- 111 (334)
T ss_pred HHh----cCccccchhhhcccHHHHHHhhhh-hccccceEEecCC-------ce-eeEEEEEEecC--CCcceee-cCC-
Confidence 332 22211 0 011111111111 1235567888876 56 88999999999 7776432 221
Q ss_pred ccccCCCCCceEEeccCCCCCC-----CCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 161 SFCSSATGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
..+++...+...+. ..+.|+|+|+|.|-+++|++.++.. .+|+|....+
T Consensus 112 --------n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~--~nv~w~ikd~ 165 (334)
T KOG2755|consen 112 --------NPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKI--LNVTWKIKDE 165 (334)
T ss_pred --------CceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhc--ceeEEEecch
Confidence 22455544444432 2357999999999999999999865 5899988776
No 191
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.81 E-value=1.4e-07 Score=84.65 Aligned_cols=37 Identities=38% Similarity=0.473 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC-CC-CeEEEecCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILERENCY 42 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~-g~-~v~iie~~~~~ 42 (294)
..+||+|||||..|+++|++|++. |. +|+|+|+....
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~ 67 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG 67 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence 357999999999999999999995 85 89999998633
No 192
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.81 E-value=8.3e-08 Score=90.26 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=35.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
.++||+|||||+.|+++|+.|++.|++|+|+|+++..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 458999999999999999999999999999999875544
No 193
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.80 E-value=1.2e-07 Score=85.76 Aligned_cols=100 Identities=17% Similarity=0.158 Sum_probs=75.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..+++...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-------------------------------R--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-------------------------------C--CCHHHHHH
Confidence 57999999999999999999999999999999875310 0 12355667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.++.. +++++|++++.++ +...+..+ + .+ +.+|.||+|+| .+|+..
T Consensus 204 ~~~~l~~~GI~i--~~~~~V~~i~~~~--~~v~v~~~-g-------~~-i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 204 AKQYMEEDGITF--LLNAHTTEVKNDG--DQVLVVTE-D-------ET-YRFDALLYATG--RKPNTE 256 (438)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEecC--CEEEEEEC-C-------eE-EEcCEEEEeeC--CCCCcc
Confidence 777777788766 8999999997643 33434332 1 46 89999999999 666643
No 194
>PRK08275 putative oxidoreductase; Provisional
Probab=98.79 E-value=3e-07 Score=85.63 Aligned_cols=141 Identities=11% Similarity=0.108 Sum_probs=80.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCC-CCcCCC--CCCc-EE--EecCCcc--------------
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA-SIWKKY--SYDR-LR--LHLAKQF-------------- 62 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~g-g~w~~~--~~~~-~~--~~~~~~~-------------- 62 (294)
...+||+|||+|.||++||..+++. |.+|+|+||.+..+ |..... .... +. ...+..+
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 86 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQ 86 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccH
Confidence 3457999999999999999999987 68999999988632 221100 0000 00 0000000
Q ss_pred --------------ccC--CCCCCCCC------------CC----CCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEE
Q 022626 63 --------------CQL--PHLPFPSS------------YP----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110 (294)
Q Consensus 63 --------------~~~--~~~~~~~~------------~~----~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~ 110 (294)
..+ -..++... .. .......+.+.+.+.+++.+++. .+++.++.+.
T Consensus 87 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~~~v~~Li 164 (554)
T PRK08275 87 KAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLI--TNRIMATRLL 164 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEE--EcceEEEEEE
Confidence 000 00111000 00 01235578888888888877766 9999999997
Q ss_pred EcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
.+++....-+...+..++ .... +.++.||+|||.++.
T Consensus 165 ~~~~g~v~Gv~~~~~~~g--~~~~-i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 165 TDADGRVAGALGFDCRTG--EFLV-IRAKAVILCCGAAGR 201 (554)
T ss_pred EcCCCeEEEEEEEecCCC--cEEE-EECCEEEECCCCccc
Confidence 653222222332221111 2246 789999999997543
No 195
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.76 E-value=1.7e-07 Score=85.51 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 79 ~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
+...+...+.+.+++.|... +++++|+++..++ ++.|.+.+.+...+ ...+ +.+|+||+|+|.++.
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i--~~~t~V~~i~~~~-~~~v~v~~~~~~~g--~~~~-i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTI--RFGHEVRNLKRQS-DGSWTVTVKNTRTG--GKRT-LNTRFVFVGAGGGAL 241 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCeEEEEEeeccCC--ceEE-EECCEEEECCCcchH
Confidence 55677777777787777666 9999999998754 24688865432211 1146 899999999998663
No 196
>PRK06370 mercuric reductase; Validated
Probab=98.75 E-value=2.6e-07 Score=84.25 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=77.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-------------------------------R--EDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-------------------------------c--cCHHHHHH
Confidence 57999999999999999999999999999998775320 0 11355667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. +++++|.+++.++ +...+.+...+. ..+ +.+|.||+|+| .+|+..
T Consensus 218 l~~~l~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~----~~~-i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 218 VREILEREGIDV--RLNAECIRVERDG--DGIAVGLDCNGG----APE-ITGSHILVAVG--RVPNTD 274 (463)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEEeCCC----ceE-EEeCEEEECcC--CCcCCC
Confidence 777777778766 8999999997654 334454432111 156 89999999999 666644
No 197
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.75 E-value=2.9e-07 Score=83.20 Aligned_cols=137 Identities=20% Similarity=0.248 Sum_probs=89.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC--C------C--------------------------
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--S------Y-------------------------- 51 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~--~------~-------------------------- 51 (294)
..+||+|||||+.|+-+|..++..|++|+++|+.+...|+.... . |
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 56899999999999999999999999999999999777754321 0 0
Q ss_pred ----CcEEEecC----Ccc--------ccCCCC-------------------CC--CCC------C-CCCCCHHHHHHHH
Q 022626 52 ----DRLRLHLA----KQF--------CQLPHL-------------------PF--PSS------Y-PMFVSRAQFIEHL 87 (294)
Q Consensus 52 ----~~~~~~~~----~~~--------~~~~~~-------------------~~--~~~------~-~~~~~~~~~~~~l 87 (294)
+.+....+ ..+ ..+.+. |. ++. + ....+...+..-.
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 00000000 000 000000 00 000 0 0112344555556
Q ss_pred HHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
..-+.+.|-.. ...++|+++..+. +.|-|.+++..++ ++.. +.++.||.|||.|+
T Consensus 171 a~~A~~~Ga~i--l~~~~v~~~~re~--~v~gV~~~D~~tg--~~~~-ira~~VVNAaGpW~ 225 (532)
T COG0578 171 ARDAAEHGAEI--LTYTRVESLRREG--GVWGVEVEDRETG--ETYE-IRARAVVNAAGPWV 225 (532)
T ss_pred HHHHHhcccch--hhcceeeeeeecC--CEEEEEEEecCCC--cEEE-EEcCEEEECCCccH
Confidence 66677777766 8888999998876 4888998876654 4567 89999999999765
No 198
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=5.2e-07 Score=84.51 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=34.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..+||+|||+|.||++||..+++.|.+|+|+||....+|
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 357999999999999999999999999999999864433
No 199
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=2.1e-07 Score=86.53 Aligned_cols=144 Identities=17% Similarity=0.141 Sum_probs=81.7
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC-CCCCcCCC--CC-------CcE-------------EEe
Q 022626 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIWKKY--SY-------DRL-------------RLH 57 (294)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~-~gg~w~~~--~~-------~~~-------------~~~ 57 (294)
|......+||+|||+|.||++||..+ +.|.+|+|+||.+. .||+-... .+ +.. ..+
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d 79 (543)
T PRK06263 1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLND 79 (543)
T ss_pred CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence 43444568999999999999999999 89999999999864 44421110 00 000 000
Q ss_pred ----------cCCccccC--CCCCCCCC-----------CCCC--------CCHHHHHHHHHHHHHHcCCCceeeeCcEE
Q 022626 58 ----------LAKQFCQL--PHLPFPSS-----------YPMF--------VSRAQFIEHLDHYVSHFNIGPSIRYQRSV 106 (294)
Q Consensus 58 ----------~~~~~~~~--~~~~~~~~-----------~~~~--------~~~~~~~~~l~~~~~~~~l~~~i~~~~~V 106 (294)
.+..+..+ -..++... ...+ .+...+...+.+.+++.+++. ++++.+
T Consensus 80 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~t~v 157 (543)
T PRK06263 80 PKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKI--LEEVMA 157 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEE--EeCeEe
Confidence 00000000 01111100 0001 134677778888787777665 999999
Q ss_pred EEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 107 ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 107 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
+++..++.....-+...+...+ .... +.++.||+|||.++.
T Consensus 158 ~~Li~~~~~~v~Gv~~~~~~~g--~~~~-i~AkaVIlATGG~~~ 198 (543)
T PRK06263 158 IKLIVDENREVIGAIFLDLRNG--EIFP-IYAKATILATGGAGQ 198 (543)
T ss_pred eeeEEeCCcEEEEEEEEECCCC--cEEE-EEcCcEEECCCCCCC
Confidence 9987654211222333221111 2246 899999999997653
No 200
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.73 E-value=3.3e-07 Score=86.04 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=33.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY 42 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~ 42 (294)
.+||+|||+|.||++||..+++. |.+|+|+||.+..
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 47999999999999999999998 9999999998753
No 201
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.73 E-value=7.5e-07 Score=81.50 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=77.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
.+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ..+++..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~ 228 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------AA--ADEQVAK 228 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------Cc--CCHHHHH
Confidence 35799999999999999999999999999999876431 00 0135566
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
.+.+..++.+++. +.+++|++++.++ +...+...++++ ++.. +.+|.|++|+| ..|+.+
T Consensus 229 ~~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~~~g---~~~~-i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 229 EAAKAFTKQGLDI--HLGVKIGEIKTGG--KGVSVAYTDADG---EAQT-LEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHHHcCcEE--EeCcEEEEEEEcC--CEEEEEEEeCCC---ceeE-EEcCEEEEccC--CccCCC
Confidence 6666677777666 8999999997654 344555543211 2256 89999999999 666654
No 202
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=5.1e-07 Score=84.45 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=37.1
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
|.-....+||+|||+|.||++||..+++.|.+|+|+||....+|
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 44344467999999999999999999999999999999875543
No 203
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.72 E-value=1.6e-08 Score=91.45 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCC
Q 022626 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (294)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~ 147 (294)
.++..+.++|.+.+.+.|++. +.+ +|+.+..++++....|+++++ ++ +++|.+|-|+|.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~--~~g-~V~~v~~~~~g~i~~v~~~~g-------~~-i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEV--IEG-TVVDVELDEDGRITAVRLDDG-------RT-IEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EE--EET--EEEEEE-TTSEEEEEEETTS-------EE-EEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCEE--EeC-EEEEEEEcCCCCEEEEEECCC-------CE-EEEeEEEECCCc
Confidence 488999999999999999875 555 588887776333345666664 67 999999999995
No 204
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.72 E-value=2.6e-07 Score=84.29 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=77.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . -.+++...
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------------------~-~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS--------------------------------F-LDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC--------------------------------c-CCHHHHHH
Confidence 57999999999999999999999999999998775310 0 12356667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. +++++|++++.++ +.+.+++.++ .+ +.+|.|++|+| .+|+..
T Consensus 222 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vi~a~G--~~p~~~ 275 (461)
T PRK05249 222 LSYHLRDSGVTI--RHNEEVEKVEGGD--DGVIVHLKSG-------KK-IKADCLLYANG--RTGNTD 275 (461)
T ss_pred HHHHHHHcCCEE--EECCEEEEEEEeC--CeEEEEECCC-------CE-EEeCEEEEeec--CCcccc
Confidence 777777777666 8899999997654 4566665443 46 89999999999 666543
No 205
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.72 E-value=2.5e-07 Score=85.83 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=81.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCC--CC-------CcE-------------EEe-------
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--SY-------DRL-------------RLH------- 57 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~--~~-------~~~-------------~~~------- 57 (294)
.+||+|||+|.||++||..+++.|.+|+|+||....+|.-... .+ ++. .++
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~ 95 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL 95 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 5799999999999999999999999999999988665421100 00 000 000
Q ss_pred ---cC---CccccCCCCCCCCC--------------CC------CCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEE
Q 022626 58 ---LA---KQFCQLPHLPFPSS--------------YP------MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY 111 (294)
Q Consensus 58 ---~~---~~~~~~~~~~~~~~--------------~~------~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~ 111 (294)
.+ ..+.. -..++... .+ .......+...|.+.+++.++.. +.++.|+++..
T Consensus 96 ~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i--~~~~~v~~Li~ 172 (541)
T PRK07804 96 VAEGPRAVRELVA-LGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDI--REHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHH-cCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEE--EECeEeeeeEE
Confidence 00 00000 01111100 00 01145678888888888887655 89999999976
Q ss_pred cCCCCcEEEEEec---cCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 112 DEATNMWNVKASN---LLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 112 ~~~~~~~~v~~~~---~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
+++....-+...+ +..+ .... +.++.||+|||.++.
T Consensus 173 ~~~g~v~Gv~~~~~~~~~~~--g~~~-i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 173 DGTGAVAGVTLHVLGEGSPD--GVGA-VHAPAVVLATGGLGQ 211 (541)
T ss_pred cCCCeEEEEEEEeccCCCCC--cEEE-EEcCeEEECCCCCCC
Confidence 5422222233321 1111 1246 899999999997664
No 206
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.72 E-value=1.6e-07 Score=83.85 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=75.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... ...+.+..+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 468999999999999999999999999999987753210 012356677
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~ 152 (294)
+.+..++.++.. +++++|++++. + +.+.+.+.++ ++ +.+|.||+|+| ..|+
T Consensus 192 l~~~l~~~GV~i--~~~~~V~~i~~-~--~~~~v~l~~g-------~~-i~aD~Vv~a~G--~~pn 242 (396)
T PRK09754 192 LLQRHQQAGVRI--LLNNAIEHVVD-G--EKVELTLQSG-------ET-LQADVVIYGIG--ISAN 242 (396)
T ss_pred HHHHHHHCCCEE--EeCCeeEEEEc-C--CEEEEEECCC-------CE-EECCEEEECCC--CChh
Confidence 777777788766 89999998864 2 3455666553 46 89999999999 5554
No 207
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.72 E-value=7.9e-07 Score=81.20 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=77.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ .+++...
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~~--d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PNE--DAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Ccc--CHHHHHH
Confidence 5799999999999999999999999999999876421 110 1356667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. +++++|+++..++ +...+.+...++ ...+ +.+|.|++|+| .+|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~g---~~~~-i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 219 IAKQYKKLGVKI--LTGTKVESIDDNG--SKVTVTVSKKDG---KAQE-LEADKVLQAIG--FAPRVE 276 (466)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEeC--CeEEEEEEecCC---CeEE-EEeCEEEECcC--cccCCC
Confidence 777777778776 9999999997643 345555541111 2246 89999999999 666543
No 208
>PRK07208 hypothetical protein; Provisional
Probab=98.71 E-value=4.8e-08 Score=89.54 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=42.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcE
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRL 54 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~ 54 (294)
++++|+|||||++||+||..|.+.|++|+|+|+.+.+||.+....+.+.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~ 51 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGN 51 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCc
Confidence 3579999999999999999999999999999999999997654434333
No 209
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.70 E-value=2.2e-07 Score=87.14 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=34.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..+||+|||+|.||++||..+++.|.+|+|+||....++
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 357999999999999999999999999999999875443
No 210
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.70 E-value=2.6e-07 Score=86.87 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=35.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
.+||+|||+|.||++||..+++.|.+|+|+||....+|
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 57999999999999999999999999999999886554
No 211
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.69 E-value=5.4e-07 Score=76.88 Aligned_cols=158 Identities=18% Similarity=0.245 Sum_probs=110.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
-|++++|||||..||..+.-..++|-+||++|-.+.+++.. ..++..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m---------------------------------D~Eisk 256 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM---------------------------------DGEISK 256 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc---------------------------------CHHHHH
Confidence 36899999999999999999999999999999988877541 136777
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~g~~~~~~~ 165 (294)
.+++..+..++.. ++++.|.+++...+ +...|.+++..++ +.++ +++|.+++|+| .+|+...+ |++...-.
T Consensus 257 ~~qr~L~kQgikF--~l~tkv~~a~~~~d-g~v~i~ve~ak~~--k~~t-le~DvlLVsiG--RrP~t~GL-gle~iGi~ 327 (506)
T KOG1335|consen 257 AFQRVLQKQGIKF--KLGTKVTSATRNGD-GPVEIEVENAKTG--KKET-LECDVLLVSIG--RRPFTEGL-GLEKIGIE 327 (506)
T ss_pred HHHHHHHhcCcee--EeccEEEEeeccCC-CceEEEEEecCCC--ceeE-EEeeEEEEEcc--CcccccCC-Chhhcccc
Confidence 8888888889888 99999999988774 3677777765443 3467 99999999999 77766543 22221000
Q ss_pred CCCCceEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhcc
Q 022626 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHA 209 (294)
Q Consensus 166 ~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~~ 209 (294)
....|++.--.++.. +-.++-.||.-.-|.=+|.-.-+.|
T Consensus 328 ~D~r~rv~v~~~f~t----~vP~i~~IGDv~~gpMLAhkAeeeg 367 (506)
T KOG1335|consen 328 LDKRGRVIVNTRFQT----KVPHIYAIGDVTLGPMLAHKAEEEG 367 (506)
T ss_pred cccccceeccccccc----cCCceEEecccCCcchhhhhhhhhc
Confidence 011344433332222 2346778888776666655444443
No 212
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.69 E-value=4e-07 Score=83.53 Aligned_cols=134 Identities=17% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC--CCC-------CcE-------------EEe-------
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--YSY-------DRL-------------RLH------- 57 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~--~~~-------~~~-------------~~~------- 57 (294)
.+||+|||+|.||++||..+++.|. |+|+||.+..+|.-.. ..+ ++. .++
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4699999999999999999999997 9999999765542110 000 000 000
Q ss_pred ---cC---CccccCCCCCCCC--------------CCC-----CCCCHHHHHHHHHHHHHH-cCCCceeeeCcEEEEEEE
Q 022626 58 ---LA---KQFCQLPHLPFPS--------------SYP-----MFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASY 111 (294)
Q Consensus 58 ---~~---~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~l~~~~~~-~~l~~~i~~~~~V~~i~~ 111 (294)
.+ ..+.. -..++.. ..+ ...+...+...+.+.+++ .++.. ++++.|+++..
T Consensus 81 ~~~~~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i--~~~~~v~~l~~ 157 (488)
T TIGR00551 81 VSDARSAVQWLVD-QGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRI--IEGENALDLLI 157 (488)
T ss_pred HHhHHHHHHHHHH-cCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEE--EECeEeeeeec
Confidence 00 00000 0011110 000 011346788888888876 46655 99999999875
Q ss_pred cCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 112 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
++ +...-+...+.+ .... +.++.||+|||.++.
T Consensus 158 ~~-g~v~Gv~~~~~~----~~~~-i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 158 ET-GRVVGVWVWNRE----TVET-CHADAVVLATGGAGK 190 (488)
T ss_pred cC-CEEEEEEEEECC----cEEE-EEcCEEEECCCcccC
Confidence 43 222224444321 2246 899999999997664
No 213
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.69 E-value=2.6e-08 Score=91.09 Aligned_cols=48 Identities=27% Similarity=0.470 Sum_probs=41.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcE
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRL 54 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~ 54 (294)
.+||||||||++||+||..|+++|++|+|+||+..+||..+...+.+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf 50 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGF 50 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccce
Confidence 579999999999999999999999999999999999996554333333
No 214
>PRK06116 glutathione reductase; Validated
Probab=98.69 E-value=4.2e-07 Score=82.66 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=77.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.+++...
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-------------------------------G--FDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-------------------------------c--cCHHHHHH
Confidence 57999999999999999999999999999998764210 0 01356667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. +++++|.+++.++ ++.+.+.+.++ .+ +.+|.||+|+| .+|+..
T Consensus 214 l~~~L~~~GV~i--~~~~~V~~i~~~~-~g~~~v~~~~g-------~~-i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 214 LVEEMEKKGIRL--HTNAVPKAVEKNA-DGSLTLTLEDG-------ET-LTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHHCCcEE--ECCCEEEEEEEcC-CceEEEEEcCC-------cE-EEeCEEEEeeC--CCcCCC
Confidence 777777788766 9999999997654 23355666543 46 89999999999 666554
No 215
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=6.8e-07 Score=84.36 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g 43 (294)
.+||+|||+|.||++||..+++.|.+|+|+||...++
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4799999999999999999999999999999876553
No 216
>PTZ00367 squalene epoxidase; Provisional
Probab=98.68 E-value=3.3e-07 Score=84.93 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=32.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
..+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45799999999999999999999999999999975
No 217
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.67 E-value=3e-07 Score=86.48 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=34.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
.+||+|||+|.||++||..+++.|.+|+|+||....+|
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 47999999999999999999999999999999876554
No 218
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.67 E-value=5.9e-07 Score=81.95 Aligned_cols=107 Identities=15% Similarity=0.235 Sum_probs=76.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
.+.+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+. +. ...++..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~--~d~~~~~ 219 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG--TDTETAK 219 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC--CCHHHHH
Confidence 35799999999999999999999999999999876431 01 0124566
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
++.+..++.+++. +++++|++++.++ +...+.+....++ .... +.+|.|++|+| .+|+..
T Consensus 220 ~l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~pn~~ 279 (466)
T PRK06115 220 TLQKALTKQGMKF--KLGSKVTGATAGA--DGVSLTLEPAAGG--AAET-LQADYVLVAIG--RRPYTQ 279 (466)
T ss_pred HHHHHHHhcCCEE--EECcEEEEEEEcC--CeEEEEEEEcCCC--ceeE-EEeCEEEEccC--Cccccc
Confidence 6777777777766 9999999997643 3445544321111 1256 89999999999 666543
No 219
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=2.9e-08 Score=90.16 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=37.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..+++|+|||||+|||+||+.|.+.|++|+|+|+++++||
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 3467999999999999999999999999999999999998
No 220
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.67 E-value=1.5e-06 Score=81.43 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
+.||+|||+|.||++||..+++.|.+|+|+||.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 56999999999999999999999999999999876543
No 221
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.66 E-value=4.7e-07 Score=82.17 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=75.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ..+++...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG--FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc--cCHHHHHH
Confidence 5789999999999999999999999999999876421 00 11356667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
+.+..++.++.. +++++|++++.++ +...+.+.++ .+ +.+|.||+|+| ..|+.
T Consensus 213 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~viva~G--~~pn~ 265 (446)
T TIGR01424 213 LARNMEGRGIRI--HPQTSLTSITKTD--DGLKVTLSHG-------EE-IVADVVLFATG--RSPNT 265 (446)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEcCC-------cE-eecCEEEEeeC--CCcCC
Confidence 777777777766 8999999997654 3455665443 46 89999999999 66654
No 222
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.66 E-value=1.8e-07 Score=82.21 Aligned_cols=67 Identities=19% Similarity=0.346 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCC
Q 022626 79 SRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (294)
Q Consensus 79 ~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p 151 (294)
+-..+.+.+-+++.+. +... +++++|+++.+.. ++.|.|.+.+..++ ...+ +.+++|++..|..+.+
T Consensus 179 nFG~LTr~l~~~l~~~~~~~~--~~~~eV~~i~r~~-dg~W~v~~~~~~~~--~~~~-v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 179 NFGALTRQLVEYLQKQKGFEL--HLNHEVTDIKRNG-DGRWEVKVKDLKTG--EKRE-VRAKFVFVGAGGGALP 246 (488)
T ss_pred cHHHHHHHHHHHHHhCCCcEE--EecCEeCeeEECC-CCCEEEEEEecCCC--CeEE-EECCEEEECCchHhHH
Confidence 4456666666666655 5554 9999999999876 56799998765433 3367 8999999999976643
No 223
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.66 E-value=4.7e-07 Score=82.57 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
+||+|||||.||++||..+++.|.+|+|+||.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999864
No 224
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.65 E-value=3.1e-07 Score=83.94 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=37.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC----CCCeEEEecCCCCCCCc
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIW 46 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~----g~~v~iie~~~~~gg~w 46 (294)
.+++++|||||.|||+||..|.+. |.+|+|+|+.+.+||..
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 357999999999999999999996 67999999999999854
No 225
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.65 E-value=9e-07 Score=80.95 Aligned_cols=66 Identities=14% Similarity=0.283 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHHcC-CCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 79 SRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 79 ~~~~~~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
+...+.+.+.+.+++.+ +.. +++++|+++...+ ++.|.+.+.+..++ ...+ +.+++||+|+|.++.
T Consensus 181 d~~~l~~aL~~~a~~~Ggv~i--~~~teV~~I~~~~-dg~~~v~~~~~~~G--~~~~-i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 181 NFGALTRQLVGYLQKQGNFEL--QLGHEVRDIKRND-DGSWTVTVKDLKTG--EKRT-VRAKFVFIGAGGGAL 247 (494)
T ss_pred CHHHHHHHHHHHHHhCCCeEE--EeCCEEEEEEECC-CCCEEEEEEEcCCC--ceEE-EEcCEEEECCCcchH
Confidence 33456666667777665 455 9999999998754 34588876542211 1136 899999999998764
No 226
>PRK12839 hypothetical protein; Provisional
Probab=98.65 E-value=2.7e-06 Score=79.39 Aligned_cols=40 Identities=20% Similarity=0.431 Sum_probs=37.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~ 45 (294)
..+||+|||+|.+|++||..+.+.|.+|+|+||...+||.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 4689999999999999999999999999999999887774
No 227
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.64 E-value=1.4e-07 Score=90.89 Aligned_cols=113 Identities=13% Similarity=0.280 Sum_probs=71.4
Q ss_pred CeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCC---C-C--CcCCC--------------------CCCcEEEecC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY---A-S--IWKKY--------------------SYDRLRLHLA 59 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~---g-g--~w~~~--------------------~~~~~~~~~~ 59 (294)
++|+||||||+|+++|..|++. |++|+|+|+++.. | | .|... .+....+...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 3899999999999999999998 8999999998853 2 1 11100 0000111000
Q ss_pred CccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeC
Q 022626 60 KQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139 (294)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 139 (294)
..... .....+ .-.++.++.+.|.+.+.+.++.. +++++|+.++. .. ..+|
T Consensus 81 g~~~~----~~g~~~-~~i~R~~L~~~L~e~a~~~GV~i--~~g~~v~~i~~---------------------~~-~~~D 131 (765)
T PRK08255 81 GRRIR----SGGHGF-AGIGRKRLLNILQARCEELGVKL--VFETEVPDDQA---------------------LA-ADAD 131 (765)
T ss_pred CEEEE----ECCeeE-ecCCHHHHHHHHHHHHHHcCCEE--EeCCccCchhh---------------------hh-cCCC
Confidence 00000 000000 12578999999999999988765 88888765421 12 4678
Q ss_pred EEEEccCCCC
Q 022626 140 FLVVASGETT 149 (294)
Q Consensus 140 ~vv~AtG~~~ 149 (294)
.||.|+|.+|
T Consensus 132 ~VVgADG~~S 141 (765)
T PRK08255 132 LVIASDGLNS 141 (765)
T ss_pred EEEEcCCCCH
Confidence 8899999666
No 228
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.64 E-value=4.7e-07 Score=80.57 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=34.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g 43 (294)
.+++|+|||||++|+++|+.|++.|.+|+++|+....+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 46799999999999999999999999999999988554
No 229
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.64 E-value=5.2e-07 Score=81.19 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=31.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
+|+|||||.+|+++|.+|++.|.+|+|+|+...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 899999999999999999999999999999853
No 230
>PLN02507 glutathione reductase
Probab=98.63 E-value=6.7e-07 Score=82.16 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=76.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+- +. -.+++.++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHH
Confidence 5799999999999999999999999999999876421 00 12356677
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. +++++|++++.++ +...+.+.++ .+ +.+|.|++|+| .+|+..
T Consensus 250 l~~~l~~~GI~i--~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 250 VARNLEGRGINL--HPRTNLTQLTKTE--GGIKVITDHG-------EE-FVADVVLFATG--RAPNTK 303 (499)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEeC--CeEEEEECCC-------cE-EEcCEEEEeec--CCCCCC
Confidence 777777778766 8999999997644 3455555432 46 89999999999 666543
No 231
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=1e-06 Score=82.17 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=34.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..+||+|||+|.||++||..+++.|.+|+|+||.+..++
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 357999999999999999999999999999999875444
No 232
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.62 E-value=1.4e-06 Score=81.57 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=33.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
||+|||+|.||++||..+++.|.+|+|+||....+|
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 799999999999999999999999999999875543
No 233
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.61 E-value=8e-07 Score=81.08 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=76.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++..+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 223 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------------------G--EDADAAEV 223 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------C--CCHHHHHH
Confidence 46899999999999999999999999999998764320 0 11345667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.++.. +++++|++++.++ +...+.+.++ ++ +.+|.|++|+| .+|+..
T Consensus 224 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 224 LEEVFARRGMTV--LKRSRAESVERTG--DGVVVTLTDG-------RT-VEGSHALMAVG--SVPNTA 277 (466)
T ss_pred HHHHHHHCCcEE--EcCCEEEEEEEeC--CEEEEEECCC-------cE-EEecEEEEeec--CCcCCC
Confidence 777777778766 8899999997654 3455665443 46 89999999999 666544
No 234
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.61 E-value=8.1e-07 Score=83.09 Aligned_cols=39 Identities=26% Similarity=0.529 Sum_probs=36.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..+||+|||+|++|++||..++++|.+|+|+||....||
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 468999999999999999999999999999999987776
No 235
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.61 E-value=7.8e-07 Score=80.31 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=33.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
.+||+|||+|.||++||..+. .|.+|+|+||.+..+|
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 579999999999999999984 7999999999987665
No 236
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=1.6e-06 Score=81.85 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=34.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g 43 (294)
.+||+|||+|.||++||..+++.|.+|+|+||.+..+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 5799999999999999999999999999999987654
No 237
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.60 E-value=4.9e-07 Score=79.45 Aligned_cols=133 Identities=17% Similarity=0.282 Sum_probs=92.3
Q ss_pred CeEEEECCChHHHHHHHHHHhC-------------CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQ-------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY 74 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~-------------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (294)
.+++|+|||+.|+.+|.+|.+. .++|+++|+.+.+- +
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL----------------------p-------- 205 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL----------------------P-------- 205 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc----------------------c--------
Confidence 4799999999999999999864 13789999887632 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
...+++..|.++..++.|++. ++++.|++++.+. |++++++ +. +.++.+|.|+|....|..-
T Consensus 206 ---~~~~~l~~~a~~~L~~~GV~v--~l~~~Vt~v~~~~------v~~~~g~------~~-I~~~tvvWaaGv~a~~~~~ 267 (405)
T COG1252 206 ---MFPPKLSKYAERALEKLGVEV--LLGTPVTEVTPDG------VTLKDGE------EE-IPADTVVWAAGVRASPLLK 267 (405)
T ss_pred ---CCCHHHHHHHHHHHHHCCCEE--EcCCceEEECCCc------EEEccCC------ee-EecCEEEEcCCCcCChhhh
Confidence 123478889999999999887 9999999997655 7776652 36 8999999999976666555
Q ss_pred CCCCccccccCCCCCceEEeccCCCCCCCCCCCeEEEEccCC
Q 022626 155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGN 196 (294)
Q Consensus 155 ~i~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~ 196 (294)
.+-|.+.- ..|++.-.....- .. ..+|-++|...
T Consensus 268 ~l~~~e~d-----r~Grl~V~~~L~~-~~--~~~IFa~GD~A 301 (405)
T COG1252 268 DLSGLETD-----RRGRLVVNPTLQV-PG--HPDIFAAGDCA 301 (405)
T ss_pred hcChhhhc-----cCCCEEeCCCccc-CC--CCCeEEEeccc
Confidence 54223311 0355443333222 11 24577777654
No 238
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.60 E-value=1.4e-06 Score=81.43 Aligned_cols=39 Identities=21% Similarity=0.507 Sum_probs=36.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..+||+|||+|.+|++||..+++.|.+|+|+||.+..||
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 357999999999999999999999999999999987776
No 239
>PRK07846 mycothione reductase; Reviewed
Probab=98.60 E-value=7.9e-07 Score=80.75 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=71.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ..+++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------RH--LDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHH
Confidence 5799999999999999999999999999999876421 00 01234444
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~ 155 (294)
+.+.. +.++. ++++++|++++.++ +...+.+.++ ++ +.+|.|++|+| .+|+...
T Consensus 213 l~~l~-~~~v~--i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~~ 266 (451)
T PRK07846 213 FTELA-SKRWD--VRLGRNVVGVSQDG--SGVTLRLDDG-------ST-VEADVLLVATG--RVPNGDL 266 (451)
T ss_pred HHHHH-hcCeE--EEeCCEEEEEEEcC--CEEEEEECCC-------cE-eecCEEEEEEC--CccCccc
Confidence 54433 23444 48899999997654 3445555432 46 89999999999 6665543
No 240
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.60 E-value=2.7e-06 Score=77.66 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=74.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
.+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ...+++..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~ 214 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP---------------------------------LEDPEVSK 214 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------------------------chhHHHHH
Confidence 357999999999999999999999999999998775320 01135566
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
.+.+..++. ++. ++++++.+++.++. ....++..++ ...+ +.+|.|++|+| .+|+..
T Consensus 215 ~~~~~l~~~-I~i--~~~~~v~~i~~~~~-~~v~~~~~~~-----~~~~-i~~D~vi~a~G--~~p~~~ 271 (460)
T PRK06292 215 QAQKILSKE-FKI--KLGAKVTSVEKSGD-EKVEELEKGG-----KTET-IEADYVLVATG--RRPNTD 271 (460)
T ss_pred HHHHHHhhc-cEE--EcCCEEEEEEEcCC-ceEEEEEcCC-----ceEE-EEeCEEEEccC--CccCCC
Confidence 666666665 554 88999999976542 2233332222 1256 89999999999 666655
No 241
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.60 E-value=1.2e-06 Score=79.63 Aligned_cols=103 Identities=15% Similarity=0.034 Sum_probs=76.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. -.+++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------RS--FDSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------cc--cCHHHHHH
Confidence 5799999999999999999999999999999876532 00 01245666
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.++.. +.++.|+++..+. .+...++++++ . .. +.+|.|++|+| ..|+..
T Consensus 213 ~~~~l~~~gI~i--~~~~~v~~i~~~~-~~~~~v~~~~g-----~-~~-i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 213 ITEEYEKEGINV--HKLSKPVKVEKTV-EGKLVIHFEDG-----K-SI-DDVDELIWAIG--RKPNTK 268 (450)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEEeC-CceEEEEECCC-----c-EE-EEcCEEEEeeC--CCcCcc
Confidence 777777778776 8999999997643 22344555442 1 46 89999999999 666543
No 242
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=1.2e-06 Score=80.12 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=74.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. -.+++..+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~ 220 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PA--ADKDIVKV 220 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------Cc--CCHHHHHH
Confidence 5799999999999999999999999999999887531 00 01345555
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++. +.. ++++.|+.++..+ +...+.+.++++ ...+ +.+|.||+|+| .+|+..
T Consensus 221 ~~~~l~~~-v~i--~~~~~v~~i~~~~--~~~~v~~~~~~~---~~~~-i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 221 FTKRIKKQ-FNI--MLETKVTAVEAKE--DGIYVTMEGKKA---PAEP-QRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred HHHHHhhc-eEE--EcCCEEEEEEEcC--CEEEEEEEeCCC---cceE-EEeCEEEEeec--ccccCC
Confidence 66555544 444 8899999987654 445565543321 1256 89999999999 666654
No 243
>PRK14727 putative mercuric reductase; Provisional
Probab=98.58 E-value=1.2e-06 Score=80.18 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=74.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++...+. ...+++...
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----------------------------------~~d~~~~~~ 233 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----------------------------------REDPLLGET 233 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----------------------------------cchHHHHHH
Confidence 5799999999999999999999999999998743110 012356677
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.++.. +++++|+.++.++ +.+.+...+ .+ +.+|.||+|+| ..|+..
T Consensus 234 l~~~L~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~--------g~-i~aD~VlvA~G--~~pn~~ 286 (479)
T PRK14727 234 LTACFEKEGIEV--LNNTQASLVEHDD--NGFVLTTGH--------GE-LRAEKLLISTG--RHANTH 286 (479)
T ss_pred HHHHHHhCCCEE--EcCcEEEEEEEeC--CEEEEEEcC--------Ce-EEeCEEEEccC--CCCCcc
Confidence 777788888776 8899999987654 445555433 35 78999999999 555543
No 244
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.58 E-value=1.2e-06 Score=79.56 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=75.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
.+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..++..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--~~~~~~ 203 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PRE--DRDIAD 203 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CCc--CHHHHH
Confidence 35699999999999999999999999999999876421 011 135667
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
.+.+..++.+++. +++++|++++.++ +.+.+..++ .+ +.+|.|++|+| ..|+.
T Consensus 204 ~l~~~l~~~gV~v--~~~~~v~~i~~~~--~~v~v~~~~--------g~-i~~D~vl~a~G--~~pn~ 256 (441)
T PRK08010 204 NIATILRDQGVDI--ILNAHVERISHHE--NQVQVHSEH--------AQ-LAVDALLIASG--RQPAT 256 (441)
T ss_pred HHHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEcC--------Ce-EEeCEEEEeec--CCcCC
Confidence 7777788888776 8999999997654 344454432 35 78999999999 66654
No 245
>PLN02815 L-aspartate oxidase
Probab=98.58 E-value=1.4e-06 Score=81.37 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=34.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
.+||+|||+|.||++||..+++.| +|+|+||.+..+|
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 479999999999999999999999 9999999886665
No 246
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.57 E-value=3.9e-06 Score=78.58 Aligned_cols=40 Identities=18% Similarity=0.545 Sum_probs=36.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~ 45 (294)
..+||+|||+|++|+++|..+.+.|.+|+||||.+.+||.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 4689999999999999999999999999999999877763
No 247
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.57 E-value=8.7e-07 Score=80.46 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=74.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... . -.+++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------~--~~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD------------------------------S--FDKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch------------------------------h--cCHHHHHH
Confidence 479999999999999999999999999999987642100 0 02467778
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~ 152 (294)
+.+.+++.+++. +++++|+++..++ ..+.+.+++ .+ +.+|.|++|+| ..|+
T Consensus 197 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~d~vi~a~G--~~p~ 247 (444)
T PRK09564 197 MEEELRENGVEL--HLNEFVKSLIGED--KVEGVVTDK--------GE-YEADVVIVATG--VKPN 247 (444)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEecCC--cEEEEEeCC--------CE-EEcCEEEECcC--CCcC
Confidence 888888888766 8999999985432 333444432 35 89999999999 5554
No 248
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.57 E-value=2.2e-06 Score=80.47 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=30.8
Q ss_pred EEEECCChHHHHHHHHHHhCCCCeEEEecCCCC
Q 022626 10 VIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (294)
Q Consensus 10 vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~ 42 (294)
|+|||+|.||++||..+++.|.+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 699999999999999999999999999998843
No 249
>PRK14694 putative mercuric reductase; Provisional
Probab=98.57 E-value=1.3e-06 Score=79.78 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=73.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++...+. . ..+++...
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~--------------------------------~--~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS--------------------------------Q--EDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC--------------------------------C--CCHHHHHH
Confidence 5799999999999999999999999999998643210 0 12356677
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.++.. ++++.|.+++.++ +.+.+.+.+ .+ +.+|.||+|+| ..|+..
T Consensus 224 l~~~l~~~GI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~~ 276 (468)
T PRK14694 224 IEAAFRREGIEV--LKQTQASEVDYNG--REFILETNA--------GT-LRAEQLLVATG--RTPNTE 276 (468)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEECC--------CE-EEeCEEEEccC--CCCCcC
Confidence 777777778776 8899999987644 344444432 35 89999999999 555543
No 250
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=4.1e-06 Score=78.53 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=32.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
.+||+|||+|.||++||..+++. .+|+|+||....++
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 57999999999999999999987 89999999875444
No 251
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.56 E-value=3.6e-06 Score=77.72 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=37.1
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
|.+-...+||+|||+| +|++||.++++.|.+|+|+||.+..||
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4443456899999999 999999999999999999999987664
No 252
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=1.1e-06 Score=82.25 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=33.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCC--CCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g--~~v~iie~~~~~gg 44 (294)
.+||+|||+|.||++||..+++.| .+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 479999999999999999999874 89999999876553
No 253
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.55 E-value=2.7e-06 Score=85.52 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~ 45 (294)
.++||+|||+|.||++||..+++.|.+|+|+||.+..||.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4689999999999999999999999999999999888774
No 254
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.54 E-value=1.6e-06 Score=81.12 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=33.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~gg 44 (294)
.+||+|||+|.||++||..+++. |.+|+|+||....++
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999987 479999999876554
No 255
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.54 E-value=1.4e-06 Score=79.21 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=71.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . . .+++...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-------------------------------~-~-d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-------------------------------H-L-DEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-------------------------------c-c-CHHHHHH
Confidence 57999999999999999999999999999998764210 0 0 1234444
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..+ .++. ++++++|++++.++ +...+.+.++ ++ +.+|.|++|+| .+|+..
T Consensus 216 l~~~~~-~gI~--i~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 268 (452)
T TIGR03452 216 FTEIAK-KKWD--IRLGRNVTAVEQDG--DGVTLTLDDG-------ST-VTADVLLVATG--RVPNGD 268 (452)
T ss_pred HHHHHh-cCCE--EEeCCEEEEEEEcC--CeEEEEEcCC-------CE-EEcCEEEEeec--cCcCCC
Confidence 544333 3444 48899999997654 3455655443 46 89999999999 666543
No 256
>PRK07233 hypothetical protein; Provisional
Probab=98.53 E-value=3.4e-07 Score=82.74 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=37.3
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~ 48 (294)
+|+|||||++||+||..|.+.|++|+|+|+++.+||.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 6999999999999999999999999999999999996543
No 257
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.53 E-value=2e-06 Score=78.72 Aligned_cols=103 Identities=14% Similarity=0.037 Sum_probs=74.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++...+ +. -.+++.++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l--------------------------------~~--~d~~~~~~ 225 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL--------------------------------RG--FDQDCANK 225 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccc--------------------------------cc--cCHHHHHH
Confidence 468999999999999999999999999999864210 00 11356677
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. ++++.+..+...+ +...|+..+++. ..+ +.+|.|++|+| .+|+..
T Consensus 226 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~~~~----~~~-i~~D~vl~a~G--~~pn~~ 282 (484)
T TIGR01438 226 VGEHMEEHGVKF--KRQFVPIKVEQIE--AKVKVTFTDSTN----GIE-EEYDTVLLAIG--RDACTR 282 (484)
T ss_pred HHHHHHHcCCEE--EeCceEEEEEEcC--CeEEEEEecCCc----ceE-EEeCEEEEEec--CCcCCC
Confidence 777788888776 8898888887543 334455544321 146 89999999999 566543
No 258
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=98.53 E-value=5.2e-07 Score=77.75 Aligned_cols=193 Identities=15% Similarity=0.170 Sum_probs=108.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCC---------CCCC----
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH---------LPFP---- 71 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~---------~~~~---- 71 (294)
....+|||+|.+..+++...... +..|.+|..++.+. +++.-.++.+..+.+ .+|.
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP---------YmRPPLSKELW~~~dpn~~k~lrfkqwsGkeR 248 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---------YMRPPLSKELWWYGDPNSAKKLRFKQWSGKER 248 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc---------ccCCCcchhceecCCCChhhheeecccCCccc
Confidence 35789999999999988887765 56788887776532 222222222211111 0000
Q ss_pred ----CCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCC
Q 022626 72 ----SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (294)
Q Consensus 72 ----~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~ 147 (294)
+--..|++.+++-+ +.+-|+.. ..+..|..+..++ ..|.+.++ .+ +.||.+++|||
T Consensus 249 siffepd~FfvspeDLp~-----~~nGGvAv--l~G~kvvkid~~d----~~V~LnDG-------~~-I~YdkcLIATG- 308 (659)
T KOG1346|consen 249 SIFFEPDGFFVSPEDLPK-----AVNGGVAV--LRGRKVVKIDEED----KKVILNDG-------TT-IGYDKCLIATG- 308 (659)
T ss_pred eeEecCCcceeChhHCcc-----cccCceEE--EeccceEEeeccc----CeEEecCC-------cE-eehhheeeecC-
Confidence 00013345444433 22234333 5666777775443 35778776 56 89999999999
Q ss_pred CCCCCCCC-CC--CccccccCCCCCce--EEecc-CCCCCCC--CCCCeEEEEccCCcHHHHHHHHhhc----cCeEEEE
Q 022626 148 TTNPFTPD-IR--GLCSFCSSATGTGE--VIHST-QYKNGKP--YGGKNVLVVGSGNSGMEIALDLANH----AAKTSLV 215 (294)
Q Consensus 148 ~~~p~~p~-i~--g~~~~~~~~~~~g~--~~~~~-~~~~~~~--~~~~~v~VvG~G~~~~e~a~~l~~~----~~~v~~~ 215 (294)
.+|.-.. +. +.+ . +.+ ++|.. ++...+. ...++|.|||+|+.|-|+|..|.+. |.+|+.+
T Consensus 309 -~~Pk~l~~~~~A~~e-v------k~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~Qv 380 (659)
T KOG1346|consen 309 -VRPKKLQVFEEASEE-V------KQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQV 380 (659)
T ss_pred -cCcccchhhhhcCHH-h------hhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEe
Confidence 7776443 21 111 1 122 22222 1221111 1237899999999999999999875 5577776
Q ss_pred EccchhhhhhHhhccCCHHHHHHHHH
Q 022626 216 VRSPMVYLGVVLFKYVPFGWVDTLMV 241 (294)
Q Consensus 216 ~r~~~~~~~~~~~~~~~~~~~~~~~~ 241 (294)
.... -.+...||..+.++.++
T Consensus 381 F~Ek-----~nm~kiLPeyls~wt~e 401 (659)
T KOG1346|consen 381 FEEK-----YNMEKILPEYLSQWTIE 401 (659)
T ss_pred eccc-----CChhhhhHHHHHHHHHH
Confidence 4431 11233455555554444
No 259
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.52 E-value=1e-06 Score=79.74 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=73.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+... -.+++...
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~---------------------------------~d~~~~~~ 194 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL---------------------------------MDADMNQP 194 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh---------------------------------cCHHHHHH
Confidence 479999999999999999999999999999987653210 01356667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
+.+..++.++.. +++++|++++. . .+++.++ +. +.+|.|++|+| .+|+.
T Consensus 195 l~~~l~~~gI~i--~~~~~v~~i~~----~--~v~~~~g-------~~-~~~D~vl~a~G--~~pn~ 243 (438)
T PRK13512 195 ILDELDKREIPY--RLNEEIDAING----N--EVTFKSG-------KV-EHYDMIIEGVG--THPNS 243 (438)
T ss_pred HHHHHHhcCCEE--EECCeEEEEeC----C--EEEECCC-------CE-EEeCEEEECcC--CCcCh
Confidence 777777778766 89999998852 1 3565543 46 79999999999 55554
No 260
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.52 E-value=1.6e-06 Score=78.33 Aligned_cols=99 Identities=16% Similarity=0.265 Sum_probs=73.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|++|+.+|..|++.|.+|+++++.+.+.. +. ..+++..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~--~~~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KL--FDEEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------cc--cCHHHHHH
Confidence 47999999999999999999999999999998764310 00 01356677
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
+.+..++.+++. ++++.|.++..++ .. +.+.++ ++ +.+|.||+|+| ..|+.
T Consensus 185 ~~~~l~~~gV~v--~~~~~v~~i~~~~---~~-v~~~~g-------~~-i~~D~vi~a~G--~~p~~ 235 (427)
T TIGR03385 185 VEEELKKHEINL--RLNEEVDSIEGEE---RV-KVFTSG-------GV-YQADMVILATG--IKPNS 235 (427)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEecCC---CE-EEEcCC-------CE-EEeCEEEECCC--ccCCH
Confidence 777788888776 8899999986533 22 344432 46 89999999999 55543
No 261
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=2.9e-06 Score=79.49 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=34.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCC---CCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g---~~v~iie~~~~~gg 44 (294)
.+||+|||+|.||++||..+++.| .+|+|+||....++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 579999999999999999999998 89999999886654
No 262
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.51 E-value=1.5e-07 Score=85.51 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=36.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CCeEEEecCCCCCCCc
Q 022626 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIW 46 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g--~~v~iie~~~~~gg~w 46 (294)
++|+|||||+|||+||+.|++.| ++|+|+|+++.+||..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 47999999999999999999987 8999999999999843
No 263
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.50 E-value=4.9e-06 Score=77.74 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=33.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~gg 44 (294)
.+||+|||+|.||++||..+++. |.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999987 579999999886655
No 264
>PRK13748 putative mercuric reductase; Provisional
Probab=98.50 E-value=2e-06 Score=80.46 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=74.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++...+. . ..+++...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--------------------------------~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF--------------------------------R--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc--------------------------------c--cCHHHHHH
Confidence 5799999999999999999999999999998753210 0 12356677
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.++.. ++++.|+.++.++ +.+.+.+.+ .+ +.+|.|++|+| ..|+..
T Consensus 316 l~~~l~~~gI~i--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 316 VTAAFRAEGIEV--LEHTQASQVAHVD--GEFVLTTGH--------GE-LRADKLLVATG--RAPNTR 368 (561)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEEecC--CEEEEEecC--------Ce-EEeCEEEEccC--CCcCCC
Confidence 777778788776 8899999987644 445554433 35 89999999999 666553
No 265
>PTZ00058 glutathione reductase; Provisional
Probab=98.49 E-value=2.7e-06 Score=78.89 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=75.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ .+++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~~--d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RKF--DETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------ccC--CHHHHHH
Confidence 6799999999999999999999999999999876421 000 1356667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. +++..|.+++.++. +...+...++ ..+ +.+|.|++|+| .+|+..
T Consensus 284 l~~~L~~~GV~i--~~~~~V~~I~~~~~-~~v~v~~~~~------~~~-i~aD~VlvA~G--r~Pn~~ 339 (561)
T PTZ00058 284 LENDMKKNNINI--ITHANVEEIEKVKE-KNLTIYLSDG------RKY-EHFDYVIYCVG--RSPNTE 339 (561)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEecCC-CcEEEEECCC------CEE-EECCEEEECcC--CCCCcc
Confidence 777777778766 89999999976432 2334443321 156 89999999999 566543
No 266
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.49 E-value=8.8e-06 Score=75.86 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=36.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
...+||+|||+|++|++||..+++.|.+|+|+||.+.+||
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 3468999999999999999999999999999999987765
No 267
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.49 E-value=4.2e-06 Score=77.66 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=34.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..+||+|||+|.||++||..+++. .+|+|+||....+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 457999999999999999999987 89999999886665
No 268
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.48 E-value=1.7e-06 Score=83.86 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=76.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
..+++|||+|+.|+.+|..|.+.|.+|+|+++.+.+-. .. -.++....
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------------------~~-ld~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------------------EQ-LDQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------------------hh-cCHHHHHH
Confidence 46899999999999999999999999999998764210 00 11355667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
+.+..++.++.. ++++.++++..+.......+.+.++ +. +.+|.||+|+| .+|+.
T Consensus 193 l~~~L~~~GV~v--~~~~~v~~I~~~~~~~~~~v~~~dG-------~~-i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 193 LRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADG-------SE-LEVDFIVFSTG--IRPQD 247 (847)
T ss_pred HHHHHHHCCCEE--EcCCeEEEEEecCCCceEEEEECCC-------CE-EEcCEEEECCC--cccCc
Confidence 777888888776 9999999986543223344566553 46 89999999999 55553
No 269
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.47 E-value=1e-05 Score=75.33 Aligned_cols=39 Identities=23% Similarity=0.465 Sum_probs=36.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~ 45 (294)
..+||||||+| +|++||..+++.|.+|+|+||.+.+||+
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 36899999999 8999999999999999999999888884
No 270
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.47 E-value=3e-06 Score=78.13 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=33.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
.+||+|||+|.||++||..+++ |.+|+|+||.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4799999999999999999976 899999999986655
No 271
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.47 E-value=1.9e-06 Score=74.52 Aligned_cols=37 Identities=38% Similarity=0.490 Sum_probs=33.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g 43 (294)
..+|+|||||.+|+++|..|.++|++|+|+|+...+-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 3589999999999999999999999999999876543
No 272
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.46 E-value=3.2e-06 Score=77.37 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=75.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC---CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (294)
.+.+++|||+|+.|+.+|..+... |.+|+|+++.+.+. +. -.++
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~ 232 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------RG--FDST 232 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------cc--cCHH
Confidence 357999999999999999766544 89999999877531 00 1146
Q ss_pred HHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 83 ~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+.+.+..++.++.. ++++.|+++..++ ++...+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 233 ~~~~l~~~L~~~GI~i--~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-i~~D~vl~a~G--~~Pn~~ 291 (486)
T TIGR01423 233 LRKELTKQLRANGINI--MTNENPAKVTLNA-DGSKHVTFESG-------KT-LDVDVVMMAIG--RVPRTQ 291 (486)
T ss_pred HHHHHHHHHHHcCCEE--EcCCEEEEEEEcC-CceEEEEEcCC-------CE-EEcCEEEEeeC--CCcCcc
Confidence 6677777788788766 9999999997653 23344555432 46 89999999999 666543
No 273
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=4.6e-07 Score=80.88 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=79.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC----------CCCCCcCCCC---CCcE----EEecCCccccCCCC-
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN----------CYASIWKKYS---YDRL----RLHLAKQFCQLPHL- 68 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~----------~~gg~w~~~~---~~~~----~~~~~~~~~~~~~~- 68 (294)
.+||+|||||.||+.||...++.|.+++++--+. .+||.-.... .+.+ .....+...++...
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 4899999999999999999999999998887654 2222111000 0000 00001111111111
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEc
Q 022626 69 ----PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA 144 (294)
Q Consensus 69 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~A 144 (294)
|.........++..+..++++.++...... .+...|+++..++....+-|.+..+ .. +.++.||++
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~--l~q~~v~dli~e~~~~v~GV~t~~G-------~~-~~a~aVVlT 153 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH--LLQGEVEDLIVEEGQRVVGVVTADG-------PE-FHAKAVVLT 153 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce--ehHhhhHHHhhcCCCeEEEEEeCCC-------Ce-eecCEEEEe
Confidence 111111223456667777777777664222 5667787776655333466777765 57 899999999
Q ss_pred cCCCCC
Q 022626 145 SGETTN 150 (294)
Q Consensus 145 tG~~~~ 150 (294)
||.+-+
T Consensus 154 TGTFL~ 159 (621)
T COG0445 154 TGTFLR 159 (621)
T ss_pred eccccc
Confidence 996543
No 274
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.46 E-value=3.5e-06 Score=77.51 Aligned_cols=100 Identities=17% Similarity=0.022 Sum_probs=73.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+++|||+|+.|+.+|..|.+.|.+|+++++...+. . -.+++.+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~--------------------------------~--~d~~~~~~ 227 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR--------------------------------G--FDRQCSEK 227 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc--------------------------------c--CCHHHHHH
Confidence 4699999999999999999999999999998642110 0 01245667
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. +.++.+..+...+ +...+.+.++ ++ +.+|.|++|+| .+|+..
T Consensus 228 l~~~l~~~GV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 228 VVEYMKEQGTLF--LEGVVPINIEKMD--DKIKVLFSDG-------TT-ELFDTVLYATG--RKPDIK 281 (499)
T ss_pred HHHHHHHcCCEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEEeeC--CCCCcc
Confidence 777777778766 8888888887643 3344555443 46 78999999999 666543
No 275
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=7.6e-07 Score=74.37 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=54.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCC--cEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD--RLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
+|++|||||.+|+.+|..|+++|.+|+|+||++++||.......+ ++..+.=. | . -...+.+.+.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYG--------p---H-IFHT~~~~Vwd 69 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYG--------P---H-IFHTDNKRVWD 69 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeecc--------C---c-eeecCchHHHH
Confidence 689999999999999999999999999999999999975543221 22222100 0 0 02346678899
Q ss_pred HHHHHHHHc
Q 022626 86 HLDHYVSHF 94 (294)
Q Consensus 86 ~l~~~~~~~ 94 (294)
|+..+.+-.
T Consensus 70 yv~~F~e~~ 78 (374)
T COG0562 70 YVNQFTEFN 78 (374)
T ss_pred HHhhhhhhh
Confidence 999888865
No 276
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2.8e-07 Score=82.01 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=38.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC---CcCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS---IWKK 48 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg---~w~~ 48 (294)
++|+|+|||.|||+||+.|++.|++|+|+|+++.+|| .|..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~ 44 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRD 44 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeec
Confidence 4899999999999999999999999999999999998 5654
No 277
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.44 E-value=5.1e-07 Score=79.25 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=37.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~ 45 (294)
..+++|||||++|++||..|++.|++|.++||++.+||.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 468999999999999999999999999999999999985
No 278
>PLN02576 protoporphyrinogen oxidase
Probab=98.44 E-value=5.2e-07 Score=83.08 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=37.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC-CCCeEEEecCCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASI 45 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~-g~~v~iie~~~~~gg~ 45 (294)
..++|+|||||++||+||+.|.+. |++|+|+|+++.+||.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 457999999999999999999999 9999999999999984
No 279
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.44 E-value=3e-06 Score=75.94 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=77.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
..+++|||+|+.|+.+|..|++.|++|+++|+.+.+++.- .. +.+.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~-------------------------------~~-~~~~~~ 183 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL-------------------------------LD-PEVAEE 183 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh-------------------------------hh-HHHHHH
Confidence 3699999999999999999999999999999998765320 00 577788
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEE-EEEeccCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~ 152 (294)
+.+..+..++.. +++..+.+++......... +....+ .. +.+|.+++++| .+|+
T Consensus 184 ~~~~l~~~gi~~--~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~-~~~d~~~~~~g--~~p~ 238 (415)
T COG0446 184 LAELLEKYGVEL--LLGTKVVGVEGKGNTLVVERVVGIDG-------EE-IKADLVIIGPG--ERPN 238 (415)
T ss_pred HHHHHHHCCcEE--EeCCceEEEEcccCcceeeEEEEeCC-------cE-EEeeEEEEeec--cccc
Confidence 888888888665 8999999987654211111 233332 56 89999999999 5553
No 280
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.44 E-value=9.4e-06 Score=76.01 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=37.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w 46 (294)
.+||+|||+|++|+++|..+++.|.+|+|+||.+.+||..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 5799999999999999999999999999999998888754
No 281
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.44 E-value=6.1e-07 Score=60.97 Aligned_cols=50 Identities=30% Similarity=0.338 Sum_probs=40.1
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccchhhhhhHhhccCCHHHHHHHHHHH
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMVYLGVVLFKYVPFGWVDTLMVML 243 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (294)
+++|||+|.+|+|+|..|.+.+.+||+++|++ .+.+.++....+.+...+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~------~~~~~~~~~~~~~~~~~l 50 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD------RLLPGFDPDAAKILEEYL 50 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS------SSSTTSSHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc------hhhhhcCHHHHHHHHHHH
Confidence 68999999999999999999999999999994 334556666665555443
No 282
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.43 E-value=7.6e-07 Score=79.12 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=32.3
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g 43 (294)
+|+|||||++|+.+|..|++.|++|+|||+.+..+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 79999999999999999999999999999877543
No 283
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.43 E-value=4.5e-07 Score=83.43 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=36.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w 46 (294)
+||+|||||++||+||..|++.|++|+|+|+++.+||..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 589999999999999999999999999999999999843
No 284
>PLN02268 probable polyamine oxidase
Probab=98.43 E-value=2.6e-07 Score=83.68 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=36.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~ 45 (294)
.+|+|||||.|||+||+.|.+.|++|+|+|+++.+||.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 48999999999999999999999999999999999983
No 285
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.43 E-value=2.1e-06 Score=83.00 Aligned_cols=101 Identities=11% Similarity=0.091 Sum_probs=74.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+-. .. -.+.....
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------------------~~-ld~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------------------KQ-LDQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------------------hh-cCHHHHHH
Confidence 46899999999999999999999999999998764210 00 01245566
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
+.+..++.+++. ++++.++++..+. ....|.+.++ .+ +.+|.||+|+| .+|+.
T Consensus 188 l~~~l~~~GV~v--~~~~~v~~i~~~~--~~~~v~~~dG-------~~-i~~D~Vi~a~G--~~Pn~ 240 (785)
T TIGR02374 188 LQRELEQKGLTF--LLEKDTVEIVGAT--KADRIRFKDG-------SS-LEADLIVMAAG--IRPND 240 (785)
T ss_pred HHHHHHHcCCEE--EeCCceEEEEcCC--ceEEEEECCC-------CE-EEcCEEEECCC--CCcCc
Confidence 777777888776 8898888886432 3344666554 46 89999999999 55554
No 286
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.42 E-value=2.5e-06 Score=79.23 Aligned_cols=38 Identities=26% Similarity=0.565 Sum_probs=33.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..+||+|||+|.||++||..+. .|.+|+|+||.+..+|
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 4579999999999999999996 4999999999987665
No 287
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.42 E-value=1.2e-05 Score=75.07 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=36.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~ 45 (294)
.+||+|||+|.+|++||..+++.|.+|+|+|+.+..||+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 579999999999999999999999999999999877763
No 288
>PLN02676 polyamine oxidase
Probab=98.41 E-value=5.7e-07 Score=82.29 Aligned_cols=48 Identities=33% Similarity=0.461 Sum_probs=41.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCc
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDR 53 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~ 53 (294)
..++|+|||||++||+||..|.+.|. +|+|+|+++.+||.+....+.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g 73 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG 73 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC
Confidence 45799999999999999999999998 6999999999999776544443
No 289
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.40 E-value=5e-07 Score=82.41 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=36.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhC----CCCeEEEecCCCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASI 45 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~----g~~v~iie~~~~~gg~ 45 (294)
+++|+|||||++||+||+.|.+. |++|+|+|+++.+||.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 36999999999999999999999 9999999999999883
No 290
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.40 E-value=1.1e-05 Score=76.44 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=33.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g 43 (294)
.+||+|||+|.||++||..+++.|.+|+|+||.+..+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 5799999999999999999999999999999977543
No 291
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.38 E-value=1.1e-06 Score=80.25 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=35.3
Q ss_pred CeEEEECCChHHHHHHHHHHhC------CCCeEEEecCCCCCCCc
Q 022626 8 VEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASIW 46 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~------g~~v~iie~~~~~gg~w 46 (294)
++|+|||||++||+||+.|.+. +++|+|+|+++.+||..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 4799999999999999999986 37999999999999953
No 292
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.37 E-value=4.9e-07 Score=83.39 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=35.1
Q ss_pred EEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 022626 10 VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (294)
Q Consensus 10 vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w 46 (294)
|||||||++||+||..|++.|++|+|+|+++.+||..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~ 37 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRA 37 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCce
Confidence 6899999999999999999999999999999999853
No 293
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.36 E-value=5.9e-07 Score=80.05 Aligned_cols=41 Identities=17% Similarity=0.442 Sum_probs=37.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CCeEEEecCCCCCCCcCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKK 48 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g--~~v~iie~~~~~gg~w~~ 48 (294)
++|+|||||++||+||+.|.+.+ .+++|||+++.+||....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 47999999999999999999998 899999999999996543
No 294
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.36 E-value=9.4e-06 Score=76.51 Aligned_cols=111 Identities=17% Similarity=0.131 Sum_probs=74.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
+.+|+|||+|+.|+..|..|.+.|.+|+++|+.+.+.. . -..++.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-------------------------------~--~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-------------------------------L--LDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-------------------------------c--CCHHHHHH
Confidence 56899999999999999999999999999999875320 0 11245566
Q ss_pred HHHHH-HHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccC---CCC-----ceeEEEEeeCEEEEccCCCCCCCCCC
Q 022626 87 LDHYV-SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL---SPG-----REIEEYYSGRFLVVASGETTNPFTPD 155 (294)
Q Consensus 87 l~~~~-~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~---~~~-----~~~~~~~~~d~vv~AtG~~~~p~~p~ 155 (294)
+.+.. ++.++.. +.++.|..++..+......+...+.. ..+ ...++ +.+|.|++|+| .+|+...
T Consensus 359 l~~~ll~~~GV~I--~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-i~aD~VlvAtG--r~Pnt~~ 431 (659)
T PTZ00153 359 FERVFLKSKPVRV--HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE-TYVDSCLVATG--RKPNTNN 431 (659)
T ss_pred HHHHHhhcCCcEE--EcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE-EEcCEEEEEEC--cccCCcc
Confidence 66543 4566665 99999999976542222344432211 000 01136 89999999999 6666543
No 295
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.35 E-value=7.7e-07 Score=81.87 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=37.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~ 48 (294)
+||+|||||.+||++|..|++.|++|+|+||++.+||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence 58999999999999999999999999999999999985443
No 296
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.35 E-value=1.4e-05 Score=72.18 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=69.0
Q ss_pred CeEEEECCChHHHHHHHHHHh--------------CCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSL--------------QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS 73 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~--------------~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (294)
.+|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 489999999999999999876 367899999876421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCC
Q 022626 74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (294)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~ 147 (294)
+.+ .+.+.+++.+..++.+++. +.+++|+++..+ .|.++++ ++ +.+|.+|+|+|.
T Consensus 224 -~~~--~~~~~~~~~~~L~~~gV~v--~~~~~v~~v~~~------~v~~~~g-------~~-i~~d~vi~~~G~ 278 (424)
T PTZ00318 224 -GSF--DQALRKYGQRRLRRLGVDI--RTKTAVKEVLDK------EVVLKDG-------EV-IPTGLVVWSTGV 278 (424)
T ss_pred -ccC--CHHHHHHHHHHHHHCCCEE--EeCCeEEEEeCC------EEEECCC-------CE-EEccEEEEccCC
Confidence 111 1356677788888888776 889999888532 2666554 46 899999999994
No 297
>PRK10262 thioredoxin reductase; Provisional
Probab=98.34 E-value=9.2e-06 Score=70.52 Aligned_cols=106 Identities=23% Similarity=0.276 Sum_probs=72.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.++|+|||+|..|+.+|..|.+.+.+|+++++.+.+. ....+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 4699999999999999999999999999999875311 01133445
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..++.+++. ..++.++++..++ .+.-.|++.+++.++ ..++ +.+|.||+|+| ..|+..
T Consensus 191 ~~~~l~~~gV~i--~~~~~v~~v~~~~-~~~~~v~~~~~~~~~-~~~~-i~~D~vv~a~G--~~p~~~ 251 (321)
T PRK10262 191 LMDKVENGNIIL--HTNRTLEEVTGDQ-MGVTGVRLRDTQNSD-NIES-LDVAGLFVAIG--HSPNTA 251 (321)
T ss_pred HHhhccCCCeEE--EeCCEEEEEEcCC-ccEEEEEEEEcCCCC-eEEE-EECCEEEEEeC--CccChh
Confidence 555555556555 8889999986543 122235554322110 2257 89999999999 555543
No 298
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.33 E-value=7.8e-07 Score=78.07 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=36.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCCCCCCCc
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIW 46 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~~~gg~w 46 (294)
..+|||||||.|||+||.+|.++|+ +++|+|..+++||--
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 4699999999999999999998876 899999999999843
No 299
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.32 E-value=1e-06 Score=77.42 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=36.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w 46 (294)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||.+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~ 40 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNC 40 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCce
Confidence 589999999999999999999999999999999999843
No 300
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.31 E-value=3.4e-06 Score=72.19 Aligned_cols=136 Identities=23% Similarity=0.198 Sum_probs=75.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC-----------CCCCCcCC---------------CCCCcEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-----------CYASIWKK---------------YSYDRLRLHLAK 60 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~-----------~~gg~w~~---------------~~~~~~~~~~~~ 60 (294)
..||+|||||.+|.++|+.|.+.|.+|.++||+- .+||.... ...........+
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk 124 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGK 124 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCc
Confidence 5799999999999999999999999999999964 33331100 000001111111
Q ss_pred c-cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEe
Q 022626 61 Q-FCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (294)
Q Consensus 61 ~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (294)
+ -..|+..+++.+..+ -.+...+.+.+++-+... ++. ....+|.++-.++ +-..-|+.++..+ ++.+ ..
T Consensus 125 ~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~---~eeGtV~sLlee~-gvvkGV~yk~k~g---ee~~-~~ 196 (509)
T KOG1298|consen 125 EVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVR---LEEGTVKSLLEEE-GVVKGVTYKNKEG---EEVE-AF 196 (509)
T ss_pred eeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeE---EeeeeHHHHHhcc-CeEEeEEEecCCC---ceEE-Ee
Confidence 1 111222222222111 124456666777666654 222 3444566654443 1223355554433 2256 77
Q ss_pred eCEEEEccCCCCC
Q 022626 138 GRFLVVASGETTN 150 (294)
Q Consensus 138 ~d~vv~AtG~~~~ 150 (294)
|-.-|+|+|.+|+
T Consensus 197 ApLTvVCDGcfSn 209 (509)
T KOG1298|consen 197 APLTVVCDGCFSN 209 (509)
T ss_pred cceEEEecchhHH
Confidence 8889999997763
No 301
>PLN02546 glutathione reductase
Probab=98.30 E-value=1.4e-05 Score=74.30 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=74.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
.+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.+++..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-------------------------------~--~d~~~~~ 297 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-------------------------------G--FDEEVRD 297 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-------------------------------c--cCHHHHH
Confidence 357999999999999999999999999999998764210 0 1235666
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
++.+..++.+++. +.++.+.++...+ ++...+...++ .. ..+|.|++|+| .+|+..
T Consensus 298 ~l~~~L~~~GV~i--~~~~~v~~i~~~~-~g~v~v~~~~g-------~~-~~~D~Viva~G--~~Pnt~ 353 (558)
T PLN02546 298 FVAEQMSLRGIEF--HTEESPQAIIKSA-DGSLSLKTNKG-------TV-EGFSHVMFATG--RKPNTK 353 (558)
T ss_pred HHHHHHHHCCcEE--EeCCEEEEEEEcC-CCEEEEEECCe-------EE-EecCEEEEeec--cccCCC
Confidence 7777777778776 8899999987543 23333443321 33 45899999999 665543
No 302
>PLN02568 polyamine oxidase
Probab=98.30 E-value=1.1e-06 Score=81.30 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=38.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCC-----CCeEEEecCCCCCCCcCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQS-----IPYVILERENCYASIWKK 48 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g-----~~v~iie~~~~~gg~w~~ 48 (294)
.++|+|||||++||+||..|.+.| ++|+|+|+++.+||.+..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 479999999999999999999887 899999999999996543
No 303
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.29 E-value=8.1e-06 Score=73.86 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEE--EEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV--KASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 80 ~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
...+.+.+.+.+++.+++. +++++|+++..+++ +.+.+ ...+. ... +.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv~i--~~~~~v~~l~~~~~-~g~v~gv~~~~~------~~~-i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEI--RYGIAVDRIPPEAF-DGAHDGPLTTVG------THR-ITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEE--EeCCEEEEEEecCC-CCeEEEEEEcCC------cEE-EEcCEEEEcCCCcc
Confidence 4567788888888888776 99999999976531 22332 33221 146 88999999999543
No 304
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.25 E-value=7.8e-06 Score=68.48 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=35.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w 46 (294)
..|||||+|.|||+|+..+...+-.|+++|++..+||..
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 369999999999999999999987799999999999843
No 305
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.25 E-value=1.5e-05 Score=73.64 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
...||+|||+|.||++||..++ +.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3579999999999999999997 569999999886
No 306
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.25 E-value=1.3e-06 Score=79.44 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=35.1
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~ 45 (294)
+|+|||||++||+||..|.+.|++|+|+|+.+.+||.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence 5899999999999999999999999999999999883
No 307
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.23 E-value=1.7e-05 Score=73.27 Aligned_cols=101 Identities=19% Similarity=0.144 Sum_probs=68.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.++|+|||||+.|+.+|..|++.+.+|+++++.+.+. . ...
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~----~~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------A----DKV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------h----hHH
Confidence 4699999999999999999999999999998765321 0 012
Q ss_pred HHHHHHH-cCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022626 87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (294)
Q Consensus 87 l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p 154 (294)
+.+..+. .+++. ++++.++++..++ +....|++.++.++ ..++ +.+|.|++|+| ..|+..
T Consensus 393 l~~~l~~~~gV~i--~~~~~v~~i~~~~-~~v~~v~~~~~~~~--~~~~-i~~D~vi~a~G--~~Pn~~ 453 (515)
T TIGR03140 393 LQDKLKSLPNVDI--LTSAQTTEIVGDG-DKVTGIRYQDRNSG--EEKQ-LDLDGVFVQIG--LVPNTE 453 (515)
T ss_pred HHHHHhcCCCCEE--EECCeeEEEEcCC-CEEEEEEEEECCCC--cEEE-EEcCEEEEEeC--CcCCch
Confidence 3333433 46555 8999998886542 12223555543222 2257 89999999999 666543
No 308
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.22 E-value=1.9e-06 Score=75.64 Aligned_cols=43 Identities=30% Similarity=0.364 Sum_probs=39.0
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..+....+|+|||||.+||++|++|.+.|++|+|+|.++.+||
T Consensus 2 ~~p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 2 TLPPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 3445568999999999999999999999999999999998887
No 309
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.22 E-value=2.7e-05 Score=66.62 Aligned_cols=99 Identities=24% Similarity=0.271 Sum_probs=66.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
..+|+|||+|++|+.+|..|.+.+.+|+++++.+.+. .. ..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~~----~~ 181 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------AE----KI 181 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------cC----HH
Confidence 4699999999999999999999999999999865310 00 12
Q ss_pred HHHHHHHc-CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 87 LDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 87 l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
+.+.+++. +++. ++++.++++..+. ....+++.+...+ ...+ +.+|.+|+|+| .+|..
T Consensus 182 ~~~~l~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~~~~ 240 (300)
T TIGR01292 182 LLDRLRKNPNIEF--LWNSTVKEIVGDN--KVEGVKIKNTVTG--EEEE-LKVDGVFIAIG--HEPNT 240 (300)
T ss_pred HHHHHHhCCCeEE--EeccEEEEEEccC--cEEEEEEEecCCC--ceEE-EEccEEEEeeC--CCCCh
Confidence 23334444 6555 8889999887533 2223444332111 2257 89999999999 55543
No 310
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.21 E-value=6.4e-06 Score=76.13 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=35.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
...+||+|||+|.||+.||..+++.|.+|+|+||....+|
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 3468999999999999999999999999999999875543
No 311
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.21 E-value=3.1e-05 Score=64.02 Aligned_cols=40 Identities=23% Similarity=0.413 Sum_probs=35.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCC------CCeEEEecCCCCCC
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQS------IPYVILERENCYAS 44 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g------~~v~iie~~~~~gg 44 (294)
.+.++|+|+|||..|+++|+.|.+++ ..++|||+..-.||
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 45689999999999999999999987 78999999886554
No 312
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.20 E-value=1.8e-05 Score=74.19 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.5
Q ss_pred eEEEECCChHHHHHHHHHH----hCCCCeEEEecCCC
Q 022626 9 EVIMVGAGTSGLATAACLS----LQSIPYVILERENC 41 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~----~~g~~v~iie~~~~ 41 (294)
||+|||+|.||++||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 6999999999999999998 67999999999764
No 313
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.17 E-value=9e-05 Score=73.00 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=32.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
.+||+|||+|.||++||..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 57999999999999999999999999999999874
No 314
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.17 E-value=2.3e-05 Score=68.42 Aligned_cols=134 Identities=16% Similarity=0.064 Sum_probs=66.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCC--CeEEEecCCCCCCCcCCCCCCcE--EEecCCccccCCCCCCC-------C-C
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRL--RLHLAKQFCQLPHLPFP-------S-S 73 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~--~v~iie~~~~~gg~w~~~~~~~~--~~~~~~~~~~~~~~~~~-------~-~ 73 (294)
..++|+|||||.++..++..|.+.+. +|+++-|...+--.- +..+ ..-.|+....|-..|.. . .
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d----~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~ 264 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMD----DSPFVNEIFSPEYVDYFYSLPDEERRELLREQR 264 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCc----cccchhhhcCchhhhhhhcCCHHHHHHHHHHhH
Confidence 45799999999999999999999865 799998876421000 0000 00000000000000000 0 0
Q ss_pred --CCCCCCHHHHHHHHH-HHHHHc--CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCC
Q 022626 74 --YPMFVSRAQFIEHLD-HYVSHF--NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (294)
Q Consensus 74 --~~~~~~~~~~~~~l~-~~~~~~--~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~ 147 (294)
...-++.+.+.+..+ -|.++. .-...++.+++|++++..+ ++.|.+.+.+..++ +..+ +.+|.||+|||.
T Consensus 265 ~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~~--~~~~-~~~D~VilATGy 339 (341)
T PF13434_consen 265 HTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDG-DGGVRLTLRHRQTG--EEET-LEVDAVILATGY 339 (341)
T ss_dssp GGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT----EEE-EEESEEEE---E
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECC-CCEEEEEEEECCCC--CeEE-EecCEEEEcCCc
Confidence 001122332322111 111111 2234558899999998876 35899999876544 4467 899999999993
No 315
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.17 E-value=2.2e-06 Score=72.36 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=38.5
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 022626 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (294)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~ 47 (294)
.+...+.+|+|||+|.+||+||..|.+. ++||+||.+..+||.-+
T Consensus 3 ~~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 3 NQPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence 3444568999999999999999999877 79999999999998543
No 316
>PLN02529 lysine-specific histone demethylase 1
Probab=98.14 E-value=3.5e-06 Score=79.96 Aligned_cols=40 Identities=38% Similarity=0.383 Sum_probs=37.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~ 45 (294)
.+++|+|||||++|++||..|.+.|++|+|+|+++.+||.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 4579999999999999999999999999999999988874
No 317
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.13 E-value=3.1e-06 Score=76.21 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=39.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~ 47 (294)
.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|.
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 58999999999999999999999999999999999999766
No 318
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.09 E-value=3.5e-05 Score=68.02 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=83.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
...|+++|+|..|+.+|..|...+.+|++|++.+.+- +. .-.+.+.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~---------------------------~~-----lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL---------------------------PR-----LFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch---------------------------hh-----hhhHHHHHH
Confidence 4579999999999999999999999999999887421 00 112466777
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR 157 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~i~ 157 (294)
...+.++.+++. +.++.+.+++...++..-.|.+.++ .+ +.+|.||+++| .+|+.+.+.
T Consensus 261 ~~~y~e~kgVk~--~~~t~~s~l~~~~~Gev~~V~l~dg-------~~-l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKF--YLGTVVSSLEGNSDGEVSEVKLKDG-------KT-LEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEE--EEecceeecccCCCCcEEEEEeccC-------CE-eccCeEEEeec--ccccccccc
Confidence 778888888777 8999999987766555556677665 57 89999999999 777776554
No 319
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.08 E-value=6.5e-05 Score=69.57 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=68.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.++|+|||+|.+|+.+|..|...+.+|+++++.+.+. . ..+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~----~~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------A----DQV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------c----cHH
Confidence 4699999999999999999999999999998776421 0 022
Q ss_pred HHHHHHH-cCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 87 l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
+.+.... .++.. ++++.++++..++ +..-.+++.+..++ .+.+ +.+|.|++|+| ..|+.
T Consensus 392 l~~~l~~~~gI~i--~~~~~v~~i~~~~-g~v~~v~~~~~~~g--~~~~-i~~D~v~~~~G--~~p~~ 451 (517)
T PRK15317 392 LQDKLRSLPNVTI--ITNAQTTEVTGDG-DKVTGLTYKDRTTG--EEHH-LELEGVFVQIG--LVPNT 451 (517)
T ss_pred HHHHHhcCCCcEE--EECcEEEEEEcCC-CcEEEEEEEECCCC--cEEE-EEcCEEEEeEC--CccCc
Confidence 3333333 35555 9999999987543 12223555443222 2357 89999999999 55543
No 320
>PLN02487 zeta-carotene desaturase
Probab=98.08 E-value=5.8e-06 Score=76.67 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=36.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCc
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w 46 (294)
+++|+|||||++|+++|..|.+.|++|+|+|+.+.+||.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence 3599999999999999999999999999999999998743
No 321
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.07 E-value=4.7e-06 Score=76.16 Aligned_cols=36 Identities=33% Similarity=0.366 Sum_probs=34.6
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
+|+|||||++|+++|..|.+.|++|+|+|+++.+||
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 589999999999999999999999999999999987
No 322
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.05 E-value=6.7e-06 Score=78.57 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=37.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~ 45 (294)
.+.+|+|||||++|++||+.|.+.|++|+|+|+++.+||.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 3579999999999999999999999999999999999884
No 323
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.02 E-value=5.5e-05 Score=66.46 Aligned_cols=59 Identities=19% Similarity=0.408 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCC
Q 022626 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (294)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~ 150 (294)
..+..-++++.+.+|++. +|+++|+.+...+ .....|++.++ .+ +.+|+||+|.|+.++
T Consensus 173 ~~vvkni~~~l~~~G~ei--~f~t~VeDi~~~~-~~~~~v~~~~g-------~~-i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESLGGEI--RFNTEVEDIEIED-NEVLGVKLTKG-------EE-IEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhcCcEE--EeeeEEEEEEecC-CceEEEEccCC-------cE-EecCEEEEccCcchH
Confidence 577778888999999777 9999999998766 22345666654 57 899999999997543
No 324
>PLN02612 phytoene desaturase
Probab=97.98 E-value=1.1e-05 Score=75.35 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=36.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
.+++|+|||||++|+++|..|.+.|++|+++|+.+.+||
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 457999999999999999999999999999999988887
No 325
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.97 E-value=7.8e-05 Score=65.90 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=65.8
Q ss_pred CCeEEEECCChHHHHHHHHHHh----CC--CCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCH
Q 022626 7 GVEVIMVGAGTSGLATAACLSL----QS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR 80 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~----~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (294)
..+|+|||+|++|+.+|..|.+ .| .+|+++. .+.+. +. -.
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l-------------------------------~~--~~ 190 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL-------------------------------PG--FP 190 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc-------------------------------cc--CC
Confidence 4599999999999999999985 34 4788883 22110 00 11
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022626 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~ 152 (294)
+.+...+.+..++.+++. +.++++++++. + .+.+.++ .+ +.+|.||+|+| ..|+
T Consensus 191 ~~~~~~~~~~l~~~gV~v--~~~~~v~~i~~----~--~v~~~~g-------~~-i~~D~vi~a~G--~~p~ 244 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEV--HEGAPVTRGPD----G--ALILADG-------RT-LPADAILWATG--ARAP 244 (364)
T ss_pred HHHHHHHHHHHHHCCCEE--EeCCeeEEEcC----C--eEEeCCC-------CE-EecCEEEEccC--CChh
Confidence 345667777788888776 88888988742 2 3666543 46 89999999999 4443
No 326
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.96 E-value=0.00013 Score=66.28 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.++|+|||+|..|+-+|..|.+.|.+|+++++.+
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4799999999999999999999999999998875
No 327
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.96 E-value=1.1e-05 Score=71.43 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=32.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~ 42 (294)
.+|+|||||++|+.||..|++.|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 59999999999999999999999999999987654
No 328
>PRK12831 putative oxidoreductase; Provisional
Probab=97.95 E-value=0.00015 Score=66.07 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
..++|+|||+|..|+-+|..|.+.|.+|+++++..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34799999999999999999999999999998765
No 329
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.94 E-value=1.2e-05 Score=73.92 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=37.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~ 47 (294)
+||+|||+||+|+.+|+.|++.|++|++||+....|+.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 5899999999999999999999999999999999998884
No 330
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.92 E-value=0.00017 Score=61.10 Aligned_cols=34 Identities=32% Similarity=0.598 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhC----CCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~----g~~v~iie~~~ 40 (294)
.++|+|||+|-.|.+.|..|++. |++|+++|+++
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 57999999999999999999875 79999999987
No 331
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.91 E-value=1.6e-05 Score=74.19 Aligned_cols=39 Identities=36% Similarity=0.500 Sum_probs=35.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC--CCCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYASI 45 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~--~~gg~ 45 (294)
.+||+|||+|.+|++||..+++.|.+|+|+||.+ ..||.
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 5799999999999999999999999999999998 66663
No 332
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.89 E-value=5.4e-05 Score=63.48 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=30.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC-CC-CeEEEecCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILERENC 41 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~-g~-~v~iie~~~~ 41 (294)
..++|+|||||.+|+.+|..+.+. +. +|.|+|....
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 468999999999999999999876 44 7999997663
No 333
>PLN03000 amine oxidase
Probab=97.88 E-value=2e-05 Score=75.55 Aligned_cols=41 Identities=32% Similarity=0.302 Sum_probs=38.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~ 47 (294)
..+|+|||||++|+++|..|.+.|++|+|+|+.+.+||.+.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 57999999999999999999999999999999999999554
No 334
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=9.1e-05 Score=65.38 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=30.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~ 39 (294)
..++|||||||.||..||...++.|.+.+++-.+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 4579999999999999999999999988888764
No 335
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.88 E-value=0.00011 Score=64.57 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCC-eEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~-v~iie~~~ 40 (294)
.+|+|||+|+.|+.+|..|.+.|.+ |+++++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 6899999999999999999999997 99998764
No 336
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.87 E-value=7.1e-05 Score=68.56 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
.+..-+...+...|++.|... ..++.|+++.... ++.|.|.+..+ . +++.++|-|+|.|.
T Consensus 184 ~DP~~lC~ala~~A~~~GA~v--iE~cpV~~i~~~~-~~~~gVeT~~G--------~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGALV--IENCPVTGLHVET-DKFGGVETPHG--------S-IETECVVNAAGVWA 243 (856)
T ss_pred cCHHHHHHHHHHHHHhcCcEE--EecCCcceEEeec-CCccceeccCc--------c-eecceEEechhHHH
Confidence 467788888898999999887 9999999986544 45667777664 4 78899999999765
No 337
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.85 E-value=2.3e-05 Score=68.11 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=34.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCC--eEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIP--YVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~--v~iie~~~~~gg 44 (294)
...+|+|+|||.+||++|+.|++.+.+ ++++|+.+++||
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 357999999999999999999999765 567999999998
No 338
>PLN02976 amine oxidase
Probab=97.84 E-value=2.4e-05 Score=77.99 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=39.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~ 48 (294)
..++|+|||||++|+++|..|.+.|++|+|||+.+.+||.|..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 3579999999999999999999999999999999999996644
No 339
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.82 E-value=4.5e-05 Score=69.99 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.++|+|||+|.+|+++|..|.+.|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999764
No 340
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.79 E-value=0.0012 Score=64.03 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCC-eEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~-v~iie~~~ 40 (294)
.++|+|||+|..|+-+|..+.+.|.+ |+++++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36999999999999999999999997 99998765
No 341
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.78 E-value=2.5e-05 Score=66.97 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=30.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCC-CCeEEEecCCCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYA 43 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g-~~v~iie~~~~~g 43 (294)
||+||||+|++|..+|.+|++.+ .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999997 6999999987543
No 342
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.78 E-value=0.00025 Score=63.15 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=31.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~ 42 (294)
+|+|||+|.|||++|..|.+. ++|+|+-|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999999 999999998754
No 343
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.75 E-value=0.00036 Score=65.17 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=32.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 47999999999999999999999999999998763
No 344
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.74 E-value=0.00052 Score=62.64 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=65.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..+|+|||+|..|+-+|..|.+.|. +|+++++.+... .+....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~---------------------------------~~~~~~--- 316 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE---------------------------------MPASEE--- 316 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc---------------------------------CCCCHH---
Confidence 5799999999999999999999998 899998764210 000011
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEecc--------------CCCCceeEEEEeeCEEEEccCCCCCC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL--------------LSPGREIEEYYSGRFLVVASGETTNP 151 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~--------------~~~~~~~~~~~~~d~vv~AtG~~~~p 151 (294)
..+.+++.+++. ++++.+..+..++. +.-.|++... .++ ...+ +.+|.||+|+| ..|
T Consensus 317 -~~~~~~~~GV~i--~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g--~~~~-i~~D~vi~a~G--~~p 387 (457)
T PRK11749 317 -EVEHAKEEGVEF--EWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEG--SEFT-LPADLVIKAIG--QTP 387 (457)
T ss_pred -HHHHHHHCCCEE--EecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCC--ceEE-EECCEEEECcc--CCC
Confidence 133455667766 88888888865431 1112332210 001 2257 89999999999 555
Q ss_pred C
Q 022626 152 F 152 (294)
Q Consensus 152 ~ 152 (294)
.
T Consensus 388 ~ 388 (457)
T PRK11749 388 N 388 (457)
T ss_pred C
Confidence 4
No 345
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.74 E-value=6.7e-05 Score=65.33 Aligned_cols=103 Identities=22% Similarity=0.281 Sum_probs=70.1
Q ss_pred CeEEEECCChHHHHHHHHHHhC--------------CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQ--------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS 73 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~--------------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (294)
..++||||||.|+..|.+|+.. .++|+++|+.+.+=.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~----------------------------- 269 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN----------------------------- 269 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-----------------------------
Confidence 4899999999999999999852 457999998774210
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
.=.+.+.+|.++...+.++.. +.++.|..++.+. ++.+..++ +.++ ++|-.+|.|||...+|..
T Consensus 270 ----mFdkrl~~yae~~f~~~~I~~--~~~t~Vk~V~~~~------I~~~~~~g---~~~~-iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 270 ----MFDKRLVEYAENQFVRDGIDL--DTGTMVKKVTEKT------IHAKTKDG---EIEE-IPYGLLVWATGNGPRPVI 333 (491)
T ss_pred ----HHHHHHHHHHHHHhhhcccee--ecccEEEeecCcE------EEEEcCCC---ceee-ecceEEEecCCCCCchhh
Confidence 001345555555555556665 8888888874333 55544322 3367 899999999997666655
Q ss_pred CC
Q 022626 154 PD 155 (294)
Q Consensus 154 p~ 155 (294)
-.
T Consensus 334 k~ 335 (491)
T KOG2495|consen 334 KD 335 (491)
T ss_pred hh
Confidence 43
No 346
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.69 E-value=0.0027 Score=58.05 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~~ 41 (294)
.++|+|||+|..|+-+|..+.+.|. +|+++++.+.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 4799999999999999999999996 7999998653
No 347
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.68 E-value=7e-05 Score=67.02 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=38.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~ 47 (294)
.++||+|||||..|.-+|......|+++.++|+++...|+..
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 358999999999999999999999999999999998777554
No 348
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.62 E-value=0.0037 Score=59.75 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=30.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~ 40 (294)
.++|+|||+|..|+-+|..+.++|. +|+++.+.+
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 3689999999999999999999987 699988764
No 349
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.59 E-value=9.4e-05 Score=66.27 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=32.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
++||+|||+|++|+++|..|.+.|.+|++||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5799999999999999999999999999999874
No 350
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.57 E-value=0.00081 Score=56.57 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=34.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA 43 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~g 43 (294)
.++|+||||||..|++.|++|.-. +.+|.++|++..++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 468999999999999999999877 88999999988655
No 351
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.51 E-value=0.0064 Score=58.00 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~ 40 (294)
.++|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999987 599998765
No 352
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.48 E-value=0.0017 Score=59.50 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=64.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
.++|+|||+|..|+-+|..+.+.|. +|++++........+ .....++.++. .
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~----------------------~~~~~~~~~~~-----~ 333 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR----------------------NKNNPWPYWPM-----K 333 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc----------------------ccccCCcccch-----H
Confidence 4799999999999999999999886 788777554322100 00000011111 1
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcE-EEEEe-----cc----CCCCceeEEEEeeCEEEEccCCCCCCC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKAS-----NL----LSPGREIEEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~-----~~----~~~~~~~~~~~~~d~vv~AtG~~~~p~ 152 (294)
...+.+++.++.. ++++.++++..++ +.. .|.+. ++ ..+ .+.+ +.+|.||+|+| ..|.
T Consensus 334 ~~~~~~~~~GV~i--~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g--~~~~-i~~D~VI~A~G--~~p~ 401 (471)
T PRK12810 334 LEVSNAHEEGVER--EFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEG--SEFV-LPADLVLLAMG--FTGP 401 (471)
T ss_pred HHHHHHHHcCCeE--EeccCceEEEccC--CEEEEEEEEEEEecCCCccccCC--ceEE-EECCEEEECcC--cCCC
Confidence 1233445567666 8888888885322 222 23322 11 011 2357 89999999999 5554
No 353
>PRK02106 choline dehydrogenase; Validated
Probab=97.47 E-value=0.00014 Score=67.97 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=32.2
Q ss_pred CCeEEEECCChHHHHHHHHHHh-CCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSL-QSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~-~g~~v~iie~~~ 40 (294)
.+|+||||+|++|+.+|.+|++ .|++|+|+|+.+
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 5899999999999999999999 799999999985
No 354
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.46 E-value=0.0013 Score=65.63 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=65.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
..+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.+ ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence 4799999999999999999999996 57899876431 11
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
.+.+.+++.++.. +.++.|+.+..++ ..-.|++...++ ..++ +.+|.|+++.| ..|+.
T Consensus 356 ~l~~~L~~~GV~i--~~~~~v~~i~g~~--~v~~V~l~~~~g---~~~~-i~~D~V~va~G--~~Pnt 413 (985)
T TIGR01372 356 EARAEARELGIEV--LTGHVVAATEGGK--RVSGVAVARNGG---AGQR-LEADALAVSGG--WTPVV 413 (985)
T ss_pred HHHHHHHHcCCEE--EcCCeEEEEecCC--cEEEEEEEecCC---ceEE-EECCEEEEcCC--cCchh
Confidence 2334456667665 8888888886432 222344432111 1257 89999999999 55543
No 355
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.44 E-value=0.0017 Score=58.37 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=35.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhC----CCCeEEEecCCCCCCCcC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWK 47 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~----g~~v~iie~~~~~gg~w~ 47 (294)
.++.=|||+|.|+|+||..|.+. |-+|+|+|+.+..||...
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 35788999999999999999987 458999999998887543
No 356
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00021 Score=60.30 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
++||+|||||.+|++|+..|.+.|.++.|+.+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 5799999999999999999999999999998754
No 357
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.41 E-value=0.0024 Score=55.71 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=71.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhC----CCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCC--------
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY-------- 74 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~----g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 74 (294)
+..|+|||+|.++..+-..|... ..++..+-|++.+ ..++.++...++-.-.+.+.+
T Consensus 187 ~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf-----------~p~d~Skf~~e~F~P~y~dyfy~l~~~~r 255 (436)
T COG3486 187 KRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGF-----------LPMDYSKFGLEYFSPEYTDYFYGLPPEAR 255 (436)
T ss_pred CceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCC-----------CccccchhhhhhcCchhHHHHhcCCHHHH
Confidence 34599999999999999999865 2234555555421 111111111000000000000
Q ss_pred --------CCC--CCHHHHHHHHHHHHHH-c---CCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCE
Q 022626 75 --------PMF--VSRAQFIEHLDHYVSH-F---NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRF 140 (294)
Q Consensus 75 --------~~~--~~~~~~~~~l~~~~~~-~---~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 140 (294)
..| .+.+.+.+..+...++ . .....+.-+++|.+++.+.+ +..++.+...+++ +..+ ++.|.
T Consensus 256 ~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~--~~~t-~~~D~ 331 (436)
T COG3486 256 DELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-GRYRLTLRHHETG--ELET-VETDA 331 (436)
T ss_pred HHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-ceEEEEEeeccCC--CceE-EEeeE
Confidence 011 2334444433332222 2 22344577889999987763 4588887765444 4467 89999
Q ss_pred EEEccCCCCCCCCCC
Q 022626 141 LVVASGETTNPFTPD 155 (294)
Q Consensus 141 vv~AtG~~~~p~~p~ 155 (294)
||+|||. +...|.
T Consensus 332 vIlATGY--~~~~P~ 344 (436)
T COG3486 332 VILATGY--RRAVPS 344 (436)
T ss_pred EEEeccc--ccCCch
Confidence 9999994 444443
No 358
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.36 E-value=0.0026 Score=62.88 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.++|+|||||..|+-+|..+.+.|.+|+++.+.+
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4799999999999999999999999999998764
No 359
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.31 E-value=0.005 Score=53.77 Aligned_cols=34 Identities=35% Similarity=0.537 Sum_probs=30.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC----CCCeEEEecC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILERE 39 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~----g~~v~iie~~ 39 (294)
..+||+|+||||.|+++|..|... ..+|.++|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 368999999999999999999865 4589999987
No 360
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.30 E-value=0.018 Score=54.96 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=30.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~ 40 (294)
.++|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999985 799998765
No 361
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.28 E-value=0.026 Score=51.95 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~~ 41 (294)
.++|+|||+|..|+-+|..+.+.|. +|+++|..+.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4799999999999999988888875 7999987654
No 362
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00033 Score=65.05 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=34.8
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
+.....+|+||||+|.+|..+|..|.+.|.+|+++|+..
T Consensus 2 ~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 2 SEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 344557899999999999999999998899999999984
No 363
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.25 E-value=0.0012 Score=60.03 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=31.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 5799999999999999999999999999998865
No 364
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.21 E-value=0.00047 Score=61.31 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
+||+|||+|++|+++|..|.+.|.+|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999875
No 365
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.18 E-value=0.00053 Score=58.11 Aligned_cols=39 Identities=36% Similarity=0.477 Sum_probs=34.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC--CCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~--~~gg 44 (294)
...+|+|||||.+||.||.+|+..|.+|+|+|++. .+||
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 35799999999999999999999999999999865 4565
No 366
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.17 E-value=0.0001 Score=58.31 Aligned_cols=42 Identities=26% Similarity=0.491 Sum_probs=35.8
Q ss_pred CeEEEECCChHHHHHHHHHHhC--CCCeEEEecCCCCC-CCcCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA-SIWKKY 49 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~--g~~v~iie~~~~~g-g~w~~~ 49 (294)
.||+|+|||.+||+||+.+.++ +.+|.|||..-.+| |.|...
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGG 121 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGG 121 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccc
Confidence 4999999999999999999876 57899999987665 578654
No 367
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.16 E-value=0.0058 Score=60.22 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=29.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhC-C-CCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQ-S-IPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~-g-~~v~iie~~~ 40 (294)
.++|+|||||..|+-+|..+.+. | .+|+++.+..
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 47999999999999999998887 5 3899998865
No 368
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.00088 Score=56.66 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=32.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~g 43 (294)
..|-|||||.||..||+++++.|++|.++|-++.-+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 479999999999999999999999999999876433
No 369
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.10 E-value=0.00048 Score=64.13 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=30.2
Q ss_pred eEEEECCChHHHHHHHHHHhCC-CCeEEEecCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQS-IPYVILEREN 40 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g-~~v~iie~~~ 40 (294)
|+||||+|.+|+.+|.+|++.+ ++|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 6999999999999999999998 7999999975
No 370
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.08 E-value=0.002 Score=56.21 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC----CCCe-EEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCH
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPY-VILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR 80 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~----g~~v-~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (294)
.+..|.|||+|+-|..+|+.|.+. |.+| .+|+.+...+ -.-.
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~---------------------------------kiLP 392 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME---------------------------------KILP 392 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh---------------------------------hhhH
Confidence 357899999999999999999875 4444 4454332110 0112
Q ss_pred HHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
+.+.+|-.+-+++.|+.. +-+..|.++.... ....+.+.++ .+ +..|.||+|+| ..|+.
T Consensus 393 eyls~wt~ekir~~GV~V--~pna~v~sv~~~~--~nl~lkL~dG-------~~-l~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDV--RPNAKVESVRKCC--KNLVLKLSDG-------SE-LRTDLVVVAVG--EEPNS 451 (659)
T ss_pred HHHHHHHHHHHHhcCcee--ccchhhhhhhhhc--cceEEEecCC-------Ce-eeeeeEEEEec--CCCch
Confidence 234445555566678776 8888888887654 4455667765 56 88999999999 66654
No 371
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.03 E-value=0.0029 Score=54.02 Aligned_cols=105 Identities=16% Similarity=0.050 Sum_probs=71.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHH
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (294)
..|++++|+|||..++..|--+...|.++.+|=|.+.+- ..| .+.+.
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-------------------R~F--------------D~~i~ 233 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-------------------RGF--------------DEMIS 233 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-------------------cch--------------hHHHH
Confidence 468899999999999999999999999998887765321 000 12344
Q ss_pred HHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022626 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (294)
Q Consensus 85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~p~ 155 (294)
+.+.+..+.-+++. +-++.++.+.+..++. ..+....+ .. ..+|.|+.|+| ..|+...
T Consensus 234 ~~v~~~~~~~ginv--h~~s~~~~v~K~~~g~-~~~i~~~~-------~i-~~vd~llwAiG--R~Pntk~ 291 (478)
T KOG0405|consen 234 DLVTEHLEGRGINV--HKNSSVTKVIKTDDGL-ELVITSHG-------TI-EDVDTLLWAIG--RKPNTKG 291 (478)
T ss_pred HHHHHHhhhcceee--cccccceeeeecCCCc-eEEEEecc-------cc-ccccEEEEEec--CCCCccc
Confidence 44555555556665 8888888887766333 33444332 23 45899999999 6665543
No 372
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0012 Score=55.13 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=28.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCC-------CCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQS-------IPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g-------~~v~iie~~~ 40 (294)
..+|+|||+|..|++.|..+.+.. .+|+++.-+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 469999999999999999888843 4788887654
No 373
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.02 E-value=0.00061 Score=59.91 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=36.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg 44 (294)
..+|++|||+|..||+||..|++.|.+|.++|+....||
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 358999999999999999999999999999999977776
No 374
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.00 E-value=0.012 Score=58.79 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=29.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCC-eEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~-v~iie~~~ 40 (294)
.++|+|||||..|+-+|..+.+.|.+ |+++.+..
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 57999999999999999999999985 77776553
No 375
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.011 Score=50.68 Aligned_cols=98 Identities=21% Similarity=0.228 Sum_probs=67.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
.++|+|||+|-+++-.|..|.+.+.+|+++-|.+.+- .. +.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~----~~ 183 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AE----EI 183 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cC----HH
Confidence 4599999999999999999999999999998876421 11 23
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
+.+.+.+.. ...+++++.+..+..++ .-.|.+++..+ ++.. +.+|.|+++.| ..|..
T Consensus 184 ~~~~l~~~~-~i~~~~~~~i~ei~G~~---v~~v~l~~~~~---~~~~-~~~~gvf~~iG--~~p~~ 240 (305)
T COG0492 184 LVERLKKNV-KIEVLTNTVVKEILGDD---VEGVVLKNVKG---EEKE-LPVDGVFIAIG--HLPNT 240 (305)
T ss_pred HHHHHHhcC-CeEEEeCCceeEEecCc---cceEEEEecCC---ceEE-EEeceEEEecC--CCCch
Confidence 333333331 34448999998886543 22355554321 3357 89999999999 55543
No 376
>PLN02785 Protein HOTHEAD
Probab=96.97 E-value=0.0011 Score=62.21 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
..+|++|||+|.+|+.+|.+|.+ +.+|+|+|+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 35899999999999999999999 689999999863
No 377
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.74 E-value=0.047 Score=51.33 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=29.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCC-CCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g-~~v~iie~~~ 40 (294)
.++|+|||+|..|+-++..+.+.+ .+|+|+.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 468999999999999999999888 5688888765
No 378
>PRK13984 putative oxidoreductase; Provisional
Probab=96.74 E-value=0.068 Score=50.71 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=26.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC------CeEEEe
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI------PYVILE 37 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~------~v~iie 37 (294)
.++|+|||||..|+-+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4799999999999999999998753 566663
No 379
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.73 E-value=0.0018 Score=49.90 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=30.1
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
+|+|||||..|.++|..|+++|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999998865
No 380
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.72 E-value=0.025 Score=56.06 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=30.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC-CC-CeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~-g~-~v~iie~~~ 40 (294)
..++|+|||||..|+-+|..+.+. |. +|+++.+..
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 357999999999999999999886 75 799998765
No 381
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0029 Score=51.89 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
++++|||+|..|.+.|..|.+.|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999998763
No 382
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.52 E-value=0.0032 Score=56.54 Aligned_cols=42 Identities=26% Similarity=0.476 Sum_probs=34.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~ 48 (294)
.+||+|+|.|..-..+|..|++.|.+|+-+|+++..||.|..
T Consensus 4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 689999999999999999999999999999999999998754
No 383
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.51 E-value=0.0033 Score=40.99 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=27.0
Q ss_pred EEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 191 VVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 191 VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
|||+|.+|+-+|..|.+.+.+|+++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999997
No 384
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.50 E-value=0.0031 Score=49.83 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=28.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999876
No 385
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.37 E-value=0.0036 Score=44.53 Aligned_cols=35 Identities=34% Similarity=0.410 Sum_probs=31.7
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEcc
Q 022626 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (294)
Q Consensus 184 ~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~ 218 (294)
.++++|+|||+|..|..-+..|.+.|++||++.+.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 56899999999999999999999999999999888
No 386
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.36 E-value=0.0042 Score=56.73 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=31.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~ 42 (294)
+|.|||.|++|+++|+.|.+.|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6999999999999999999999999999987643
No 387
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.34 E-value=0.0037 Score=49.57 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=27.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
++|+|||.|..|+.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4899999999999999999999999999998763
No 388
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.32 E-value=0.0073 Score=52.17 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=31.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
-++|+|||+|..|...|..++..|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4689999999999999999999999999999875
No 389
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.25 E-value=0.013 Score=54.93 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
..+-+|||+|.-|+.+|..|.+.|.++++++=.+.+- . .. -...-...
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM--------------------e-------rQ-----LD~~ag~l 192 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM--------------------E-------RQ-----LDRTAGRL 192 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH--------------------H-------Hh-----hhhHHHHH
Confidence 3467999999999999999999999999997544210 0 00 00112235
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~~ 153 (294)
|++-.++.++.. +++...+.+... ...-.+.+.++ .. +.+|.||.|+| -+|+.
T Consensus 193 L~~~le~~Gi~~--~l~~~t~ei~g~--~~~~~vr~~DG-------~~-i~ad~VV~a~G--IrPn~ 245 (793)
T COG1251 193 LRRKLEDLGIKV--LLEKNTEEIVGE--DKVEGVRFADG-------TE-IPADLVVMAVG--IRPND 245 (793)
T ss_pred HHHHHHhhccee--ecccchhhhhcC--cceeeEeecCC-------Cc-ccceeEEEecc--ccccc
Confidence 566667777776 666655555432 23345677765 45 89999999999 55553
No 390
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.25 E-value=0.0049 Score=43.87 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
..++|+|||+|..|..-+..|.+.|.+|+++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45799999999999999999999999999999873
No 391
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.24 E-value=0.017 Score=53.66 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=30.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
..++|+|||+|.+|.-.|..|.+...+|.+.-|+.
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 35799999999999999999999988999887764
No 392
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.23 E-value=0.052 Score=48.88 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=64.2
Q ss_pred EEECCChHHHHHH-HHHH----hCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 022626 11 IMVGAGTSGLATA-ACLS----LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (294)
Q Consensus 11 vIIGaG~aGl~aA-~~L~----~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (294)
+|++.|..|+..+ ..+. +.|.+|++++..+. ..+..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp-----------------------------------slpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP-----------------------------------SVPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC-----------------------------------CCchHHHHH
Confidence 6688888888877 4443 45999999977652 112236777
Q ss_pred HHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEE-EEeccCCCCceeEEEEeeCEEEEccCCCC
Q 022626 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV-KASNLLSPGREIEEYYSGRFLVVASGETT 149 (294)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~d~vv~AtG~~~ 149 (294)
.+.+..++.++.. ..+++|.+++.++ +...+ ...++ .... +.+|.||+|+|.+.
T Consensus 264 aL~~~l~~~Gv~I--~~g~~V~~v~~~~--~~V~~v~~~~g-----~~~~-i~AD~VVLAtGrf~ 318 (422)
T PRK05329 264 ALRRAFERLGGRI--MPGDEVLGAEFEG--GRVTAVWTRNH-----GDIP-LRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHhCCCEE--EeCCEEEEEEEeC--CEEEEEEeeCC-----ceEE-EECCEEEEeCCCcc
Confidence 7888887778665 9999999998654 33322 22222 2256 89999999999643
No 393
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.20 E-value=0.005 Score=54.94 Aligned_cols=33 Identities=36% Similarity=0.475 Sum_probs=31.1
Q ss_pred CeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 187 ~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
++|+|||+|.+|+++|..|++.|.+|+++++++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999999765
No 394
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.18 E-value=0.0079 Score=51.29 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
.+|.|||+|..|...|..++..|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4899999999999999999999999999998764
No 395
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.18 E-value=0.01 Score=47.93 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.++|+|||||..|...+..|.+.|.+|+|++.+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4699999999999999999999999999998654
No 396
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.18 E-value=0.0065 Score=56.14 Aligned_cols=37 Identities=32% Similarity=0.381 Sum_probs=33.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC-CCCeEEEecCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCY 42 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~-g~~v~iie~~~~~ 42 (294)
..||.+|||||-||+.+|.+|.+. ..+|+++|+....
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 468999999999999999999998 6799999997754
No 397
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.18 E-value=0.0088 Score=46.69 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+.+|+|+|+|.+|..|+..|..+|.+++++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 46799999999999999999999999999999765
No 398
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.17 E-value=0.013 Score=43.87 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCC-eEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~-v~iie~~~ 40 (294)
..++++|||+|-+|-.++..|.+.|.+ ++|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457999999999999999999999997 99998864
No 399
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.021 Score=48.76 Aligned_cols=101 Identities=17% Similarity=0.065 Sum_probs=71.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (294)
|-+-+|||||..+|.||-.|+-.|++|++.=|+=.+-|- ..++.+.
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGF----------------------------------Dqdmae~ 243 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGF----------------------------------DQDMAEL 243 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccc----------------------------------cHHHHHH
Confidence 558899999999999999999999999988765422110 2367778
Q ss_pred HHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCC
Q 022626 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (294)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~ 147 (294)
+.+..++.|+.. .-.+..+.+++.+ ++...|...+..++ ++-. -.||.|++|.|.
T Consensus 244 v~~~m~~~Gikf--~~~~vp~~Veq~~-~g~l~v~~k~t~t~--~~~~-~~ydTVl~AiGR 298 (503)
T KOG4716|consen 244 VAEHMEERGIKF--LRKTVPERVEQID-DGKLRVFYKNTNTG--EEGE-EEYDTVLWAIGR 298 (503)
T ss_pred HHHHHHHhCCce--eecccceeeeecc-CCcEEEEeeccccc--cccc-chhhhhhhhhcc
Confidence 888888888876 5555556666655 34566766654432 2123 468999999993
No 400
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.09 E-value=0.0064 Score=54.44 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=31.8
Q ss_pred eeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCC
Q 022626 99 SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (294)
Q Consensus 99 ~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~ 148 (294)
.+++++.|+.|+.++ +.+.|.+.++ ++ ++||+||+|+...
T Consensus 225 ~i~l~~~V~~I~~~~--~~v~v~~~~g-------~~-~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 225 EIRLNTPVTRIERED--GGVTVTTEDG-------ET-IEADAVISAVPPS 264 (450)
T ss_dssp GEESSEEEEEEEEES--SEEEEEETTS-------SE-EEESEEEE-S-HH
T ss_pred eeecCCcceeccccc--cccccccccc-------eE-EecceeeecCchh
Confidence 469999999999987 7788888875 46 8999999999953
No 401
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.08 E-value=0.012 Score=45.40 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~ 39 (294)
..++|+|||||..|..-+..|.+.|.+|+|++.+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4579999999999999999999999999999643
No 402
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.02 E-value=0.0063 Score=54.52 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=30.3
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+|+|||+|.+|+++|..|++.|.+|+++++++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 68999999999999999999999999998776
No 403
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.01 E-value=0.011 Score=53.75 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=32.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.++|+|+|+|..|+.+|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5799999999999999999999999999999875
No 404
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.93 E-value=0.0098 Score=51.90 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
++|.|||.|..||+.|..|++.|++|+++|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 489999999999999999999999999999876
No 405
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.89 E-value=0.011 Score=50.97 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 379999999999999999999999999999875
No 406
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.86 E-value=0.011 Score=45.54 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=32.3
Q ss_pred CCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEcc
Q 022626 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (294)
Q Consensus 183 ~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~ 218 (294)
...+++|+|||+|..|..-+..|.+.|.+|+++...
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 456899999999999999999999999999999543
No 407
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.85 E-value=0.06 Score=47.60 Aligned_cols=60 Identities=7% Similarity=-0.002 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCC
Q 022626 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (294)
Q Consensus 79 ~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p 151 (294)
...++.+-+...+++.++.. +++++|+++ ++ +.|.+.+.... .. +.+|+||+|||..+.|
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i--~~~~~V~~i--~~--~~~~v~~~~~~------~~-~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQF--HTRHRWIGW--QG--GTLRFETPDGQ------ST-IEADAVVLALGGASWS 143 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEE--EeCCEEEEE--eC--CcEEEEECCCc------eE-EecCEEEEcCCCcccc
Confidence 77899999999999999887 999999999 22 35888775321 46 8999999999965443
No 408
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.80 E-value=0.016 Score=53.04 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=32.3
Q ss_pred CCCeEEEEccCCcHHHHHHHHhh--ccCeEEEEEccc
Q 022626 185 GGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVVRSP 219 (294)
Q Consensus 185 ~~~~v~VvG~G~~~~e~a~~l~~--~~~~v~~~~r~~ 219 (294)
.+++|+|||+|..|+.+|..|+. .|.+|+++.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 46899999999999999999986 689999999998
No 409
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.78 E-value=0.014 Score=49.87 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+|+|||+|..|...|..|++.|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 479999999999999999999999999999875
No 410
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.72 E-value=0.019 Score=52.23 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=31.5
Q ss_pred CCCeEEEEccCCcHHHHHHHHh-hccCeEEEEEccc
Q 022626 185 GGKNVLVVGSGNSGMEIALDLA-NHAAKTSLVVRSP 219 (294)
Q Consensus 185 ~~~~v~VvG~G~~~~e~a~~l~-~~~~~v~~~~r~~ 219 (294)
.+++|+|||+|.+|+.+|..|. +.+.+|+++.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5789999999999999999765 5689999999998
No 411
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.70 E-value=0.021 Score=45.99 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~ 39 (294)
..++|+|||||-.|...+..|.+.|.+|+++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3579999999999999999999999999999764
No 412
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.67 E-value=0.016 Score=49.42 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+|+|||+|..|...|..|++.|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 589999999999999999999999999999865
No 413
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.67 E-value=0.018 Score=43.89 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=29.1
Q ss_pred EEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 10 VIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 10 vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
|+|+|+|..|...|..|.+.|++|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998864
No 414
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.64 E-value=0.016 Score=51.76 Aligned_cols=36 Identities=42% Similarity=0.673 Sum_probs=33.7
Q ss_pred CCeEEEEccCCcHHHHHHHHhhccCeEEEEEccchh
Q 022626 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPMV 221 (294)
Q Consensus 186 ~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~~~ 221 (294)
.++++|||||.+|++.|.+|+..|.+|+++.+.|.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi 159 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 579999999999999999999999999999999844
No 415
>PRK04148 hypothetical protein; Provisional
Probab=95.62 E-value=0.012 Score=43.61 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=50.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCCcEEEecCCccccCCCCCCCCCC------CCCCCH
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY------PMFVSR 80 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 80 (294)
..++++||.| .|...|..|.+.|++|+.+|.++..-.......-+....+. ..|..+.+ ...-+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDl--------f~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDL--------FNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcC--------CCCCHHHHhcCCEEEEeCCC
Confidence 3689999999 99999999999999999999877411000000000000000 00100001 112356
Q ss_pred HHHHHHHHHHHHHcCCCc
Q 022626 81 AQFIEHLDHYVSHFNIGP 98 (294)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~ 98 (294)
.+++.++.+.+++.+...
T Consensus 88 ~el~~~~~~la~~~~~~~ 105 (134)
T PRK04148 88 RDLQPFILELAKKINVPL 105 (134)
T ss_pred HHHHHHHHHHHHHcCCCE
Confidence 789999999999988765
No 416
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.61 E-value=0.016 Score=46.85 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.9
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 184 ~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+.+++|+|||+|.+|..-+..|.+.|++|+++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 568999999999999999999999999999997764
No 417
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.61 E-value=0.02 Score=48.99 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+|+|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 589999999999999999999999999999865
No 418
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.60 E-value=0.024 Score=49.07 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
..+|+|||+|.-|...|..|.+.|++|+++.|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4689999999999999999999999999999865
No 419
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.59 E-value=0.019 Score=50.85 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+.+|+|||+|..|..++..|...|.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 35689999999999999999999999999999864
No 420
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.52 E-value=0.018 Score=49.19 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+|+|||+|..|...|..|++.|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 589999999999999999999999999999876
No 421
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.52 E-value=0.017 Score=46.49 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=33.1
Q ss_pred CCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 183 ~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+.+++|+|||+|.+|...+..|.+.|.+|+++.+..
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3568999999999999999999999999999997653
No 422
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.50 E-value=0.025 Score=48.70 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.++|+|||+|.-|...|..|.+.|.+|++++|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3589999999999999999999999999999963
No 423
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.43 E-value=0.045 Score=48.69 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcEEEEEeccCCCCceeEEEEeeCEEEEccCCCCCC
Q 022626 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (294)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p 151 (294)
.+...+...+.+.+.+ +++. ++++.|++++.++ +.|.|.+.++ .. +.+|+||+|+|.++..
T Consensus 132 idp~~~~~~l~~~~~~-G~~i--~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 132 LSPPQLCRALLAHAGI-RLTL--HFNTEITSLERDG--EGWQLLDANG-------EV-IAASVVVLANGAQAGQ 192 (381)
T ss_pred cChHHHHHHHHhccCC-CcEE--EeCCEEEEEEEcC--CeEEEEeCCC-------CE-EEcCEEEEcCCccccc
Confidence 4556777777777777 7665 8999999998754 5688877654 45 7999999999986643
No 424
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.41 E-value=0.021 Score=52.33 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+.+|+|+|+|+.|+.++..++..|.+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35799999999999999999999999999999876
No 425
>PRK07236 hypothetical protein; Provisional
Probab=95.36 E-value=0.019 Score=51.13 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=32.3
Q ss_pred CCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 186 ~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
..+|+|||+|.+|+.+|..|++.|.+|++++|++
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 5789999999999999999999999999999986
No 426
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.35 E-value=0.026 Score=48.49 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=30.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
+|+|||+|..|...|..|.+.|++|++++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999843
No 427
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=0.021 Score=49.99 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=42.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCCCCCcCCCCCC
Q 022626 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD 52 (294)
Q Consensus 5 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~gg~w~~~~~~ 52 (294)
+..+||||||.|..=..+|....+.|.+|+=+|++++.||.|....++
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 345899999999999999999999999999999999999999875444
No 428
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.33 E-value=0.019 Score=51.55 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=31.1
Q ss_pred CeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 187 ~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
++|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999975
No 429
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.29 E-value=0.02 Score=49.89 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=29.0
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 68999999999999999999999999999987
No 430
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=95.24 E-value=0.02 Score=45.71 Aligned_cols=32 Identities=38% Similarity=0.744 Sum_probs=29.9
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+|+|||+|..|+.+|..|.+.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999997766
No 431
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.19 E-value=0.043 Score=49.83 Aligned_cols=61 Identities=26% Similarity=0.417 Sum_probs=45.4
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc----hhhhhhHhhccCCHHHHHHHHHHHHH
Q 022626 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP----MVYLGVVLFKYVPFGWVDTLMVMLSR 245 (294)
Q Consensus 184 ~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (294)
..+++|+|||+|..|+.+|..|++.|..||++.|.+ ++..+. ...+++..+++..++.+.+
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGI-P~~kl~k~i~d~~i~~l~~ 185 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLELLER 185 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecC-chhhccchHHHHHHHHHHH
Confidence 446999999999999999999999999999998887 332221 1134566666666665544
No 432
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.16 E-value=0.033 Score=47.88 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=29.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~ 39 (294)
+|+|||+|..|...|..|.+.|++|+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecH
Confidence 7999999999999999999999999999983
No 433
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.16 E-value=0.034 Score=41.65 Aligned_cols=37 Identities=41% Similarity=0.629 Sum_probs=33.2
Q ss_pred CCCCCeEEEEccCCcHHHHHHHHhhccCe-EEEEEccc
Q 022626 183 PYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP 219 (294)
Q Consensus 183 ~~~~~~v~VvG~G~~~~e~a~~l~~~~~~-v~~~~r~~ 219 (294)
.+.+++++|+|+|-+|-.++..|...|.+ |+++.|+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 45689999999999999999999999865 99999983
No 434
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.15 E-value=0.026 Score=55.39 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=32.8
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEcc
Q 022626 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (294)
Q Consensus 184 ~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~ 218 (294)
..+++|+|||+|..|+.+|..|+..|.+||++.+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 46899999999999999999999999999999875
No 435
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.15 E-value=0.031 Score=47.59 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+|+|||+|..|...|..|++.|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999765
No 436
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.14 E-value=0.029 Score=50.48 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
++|.|||.|..|+.+|..|++.|++|+.+|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5899999999999999999999999999998763
No 437
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.13 E-value=0.017 Score=44.52 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=30.4
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+|.|+|+|+.|.-+|..|+..|.+|++..|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999985
No 438
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.12 E-value=0.028 Score=42.04 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~ 40 (294)
..+|+|||+|.-|..+|..|.+.|+ +++++|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4699999999999999999999998 699999765
No 439
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.12 E-value=0.04 Score=47.51 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=31.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.++|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999999999999999999999999999875
No 440
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.09 E-value=0.041 Score=47.94 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+|.|||+|..|...|..|.+.|++|+++++++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 489999999999999999999999999999864
No 441
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=95.08 E-value=0.041 Score=44.29 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=33.4
Q ss_pred CCCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 183 ~~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
++....|+|||+|.+|+-+|..|++.|.+|.+++|+-
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 3445789999999999999999999999999999985
No 442
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.03 E-value=0.054 Score=43.57 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
..++++|+|.|-.|..+|+.|.+.|.+|+++|++.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45799999999999999999999999999988653
No 443
>PRK06847 hypothetical protein; Provisional
Probab=95.02 E-value=0.028 Score=49.74 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=32.0
Q ss_pred CCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 186 ~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.++|+|||+|.+|+-+|..|.+.|.+|++++|++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999886
No 444
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.97 E-value=0.033 Score=51.22 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=33.0
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 184 ~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+.++|+|||+|.+|+-+|..|.+.|.+|++++-++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 346799999999999999999999999999998776
No 445
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.94 E-value=0.043 Score=48.00 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+|+|||+|..|...|..|.+.|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 479999999999999999999999999999864
No 446
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.93 E-value=0.035 Score=51.08 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=32.5
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 184 ~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+.+++++|||+|.+|+++|..|.+.|.+|+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 346899999999999999999999999999998764
No 447
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.92 E-value=0.036 Score=40.08 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 10 VIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 10 vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
|+|+|.|..|..++..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999877999999886
No 448
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.90 E-value=0.25 Score=42.83 Aligned_cols=63 Identities=10% Similarity=0.162 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeeeCcEEEEEEEcCCCCcE-EEEEeccCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022626 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (294)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vv~AtG~~~~p~ 152 (294)
+.+...+...+.+.+.+.+... +.+++|+++..++ +.| .|.+.+ .+ +.+|.||+|+|.++...
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~--~~~~~v~~i~~~~--~~~~~v~~~~--------g~-~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEI--IEHTEVQHIEIRG--EKVTAIVTPS--------GD-VQADQVVLAAGAWAGEL 196 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEE--EccceEEEEEeeC--CEEEEEEcCC--------CE-EECCEEEEcCChhhhhc
Confidence 4566888888888888888776 8999999998754 434 355433 35 79999999999866543
No 449
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.90 E-value=0.044 Score=50.62 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
-.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998763
No 450
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.88 E-value=0.052 Score=44.53 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCC---eEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIP---YVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~---v~iie~~~ 40 (294)
...+++|+|||-+|..+|..|.+.|.+ +.++||+.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 357999999999999999999999975 99999874
No 451
>PRK05868 hypothetical protein; Validated
Probab=94.87 E-value=0.029 Score=49.82 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=31.4
Q ss_pred CeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 187 ~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
++|+|||+|..|+-+|..|++.|.+|+++++++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 479999999999999999999999999999987
No 452
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.85 E-value=0.045 Score=46.87 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+|.|||+|..|...|..|+..|++|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999875
No 453
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.84 E-value=0.048 Score=43.85 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~ 40 (294)
...+|+|||+|--|..+|..|++.|+ +++++|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35799999999999999999999999 699999873
No 454
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.83 E-value=0.041 Score=50.40 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.++|+|+|.|-+|.++|+.|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 5789999999999999999999999999999654
No 455
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.83 E-value=0.051 Score=46.92 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
++|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 589999999999999999999999999999765
No 456
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.80 E-value=0.047 Score=46.76 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=32.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
...+++|||+|..|..++..|...|.+|+++++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35799999999999999999999999999999875
No 457
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.80 E-value=0.031 Score=47.19 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+-+|+|||+|..|..+|+.+...|.+|+|+|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 35699999999999999999999999999999873
No 458
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.74 E-value=0.035 Score=49.55 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=32.2
Q ss_pred CCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 186 ~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+.+|+|||+|.+|+-+|..|.+.|.+|++++|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4689999999999999999999999999999987
No 459
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.71 E-value=0.052 Score=46.20 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~ 40 (294)
.++|+|||+|-+|.+++..|.+.|. +++|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4689999999999999999999998 799998864
No 460
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.70 E-value=0.041 Score=49.55 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=31.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
+|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998764
No 461
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.70 E-value=0.066 Score=40.44 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=29.7
Q ss_pred CeEEEECC-ChHHHHHHHHHHhCCC--CeEEEecCC
Q 022626 8 VEVIMVGA-GTSGLATAACLSLQSI--PYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGa-G~aGl~aA~~L~~~g~--~v~iie~~~ 40 (294)
.+|+|||+ |.-|.++|..|...++ ++.++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 38999999 9999999999999976 699999875
No 462
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=94.70 E-value=0.037 Score=48.23 Aligned_cols=32 Identities=28% Similarity=0.596 Sum_probs=30.5
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 48999999999999999999999999999995
No 463
>PRK07233 hypothetical protein; Provisional
Probab=94.67 E-value=0.032 Score=50.38 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=30.6
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 58999999999999999999999999999987
No 464
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=94.66 E-value=0.046 Score=49.09 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=39.1
Q ss_pred eEEeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhhc-c-CeEEEEEccc
Q 022626 171 EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH-A-AKTSLVVRSP 219 (294)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~VvG~G~~~~e~a~~l~~~-~-~~v~~~~r~~ 219 (294)
....+..++.+...+.-.|+|||+|.+|+-+|..|++. | .+|++++|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 15 HRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 34455566665555567899999999999999999985 8 4899999875
No 465
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.61 E-value=0.037 Score=48.97 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=30.7
Q ss_pred CeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 187 ~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
-.|+|||+|.+|+-+|..|++.|.+|+++.|+.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 369999999999999999999999999999875
No 466
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.61 E-value=0.059 Score=48.21 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
..+|+|+|+|+.|+.+|..++..|.+|+++|.++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 5699999999999999999999999999999875
No 467
>PRK06753 hypothetical protein; Provisional
Probab=94.60 E-value=0.038 Score=48.92 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=30.8
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999987
No 468
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.60 E-value=0.057 Score=46.55 Aligned_cols=33 Identities=33% Similarity=0.509 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHHhCCC--CeEEEecCCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSI--PYVILERENC 41 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~--~v~iie~~~~ 41 (294)
+|+|||+|..|.++|..|+..|. +++++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 79999999999999999999984 7999998753
No 469
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.59 E-value=0.056 Score=47.03 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=30.1
Q ss_pred eEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 9 ~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
+|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999854
No 470
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.57 E-value=0.068 Score=46.02 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=29.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCC-CeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~ 40 (294)
.+|.|||+|..|...|..|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 489999999999999999999876 899999854
No 471
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.55 E-value=0.058 Score=41.81 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.+|.+||-|-.|...|.+|.+.|++|.++|+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 489999999999999999999999999999875
No 472
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.55 E-value=0.066 Score=44.51 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=32.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
.+.+++|+|+|+-+..+|..+...|++|+++|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 347999999999999999999999999999997654
No 473
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.53 E-value=0.036 Score=41.50 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=27.9
Q ss_pred EEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 10 VIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 10 vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
++|+|+|+.+.+++..+...|++|+++|..+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998753
No 474
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.51 E-value=0.039 Score=49.89 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=32.7
Q ss_pred CCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 186 ~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.++++|||+|.+|+-.|..|.+.|.++++++|++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 6899999999999999999999999999999998
No 475
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.056 Score=49.42 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.++|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4689999999999999999999999999999765
No 476
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=94.48 E-value=0.042 Score=49.95 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=30.4
Q ss_pred CeEEEEccCCcHHHHHHHHhhcc--CeEEEEEccc
Q 022626 187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP 219 (294)
Q Consensus 187 ~~v~VvG~G~~~~e~a~~l~~~~--~~v~~~~r~~ 219 (294)
++|+|||+|.+|+-+|..|++.| .+|++++.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~ 35 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD 35 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 47999999999999999999987 7899999876
No 477
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.43 E-value=0.057 Score=49.76 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
..+|+|+|.|.+|++++..|.+.|.+|++.|.++
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999999999999999653
No 478
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.41 E-value=0.044 Score=48.62 Aligned_cols=32 Identities=41% Similarity=0.500 Sum_probs=30.0
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999865
No 479
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.41 E-value=0.086 Score=41.06 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.4
Q ss_pred CCCeEEEECCCh-HHHHHHHHHHhCCCCeEEEecC
Q 022626 6 AGVEVIMVGAGT-SGLATAACLSLQSIPYVILERE 39 (294)
Q Consensus 6 ~~~~vvIIGaG~-aGl~aA~~L~~~g~~v~iie~~ 39 (294)
..++|+|||+|- .|..+|..|.+.|.+|++++|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 458999999996 6999999999999999999875
No 480
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.37 E-value=0.042 Score=49.42 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=31.8
Q ss_pred CCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 186 ~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
..+|+|||+|..|+-+|..|++.|.+|++++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 3579999999999999999999999999999987
No 481
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=94.37 E-value=0.047 Score=46.30 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=30.3
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999986
No 482
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.37 E-value=0.061 Score=46.66 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 8 ~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
++|.|||+|..|...|..|++.|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 379999999999999999999999999999864
No 483
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.36 E-value=0.045 Score=49.03 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=31.6
Q ss_pred CeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 187 ~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
++|+|||+|..|+-+|..|++.|.+|++++|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 789999999999999999999999999999987
No 484
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.30 E-value=0.087 Score=41.03 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=32.8
Q ss_pred CCCCCeEEEEccCCc-HHHHHHHHhhccCeEEEEEccc
Q 022626 183 PYGGKNVLVVGSGNS-GMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 183 ~~~~~~v~VvG~G~~-~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+.+++++|||+|.+ |.-+|..|.+.|.+|+++.|+.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 467899999999985 8889999999999999999883
No 485
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.25 E-value=0.065 Score=48.28 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=33.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~~ 42 (294)
..++|+|+|-|-+|+++|..|.+.|.+|+++|.++..
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 3679999999999999999999999999999976654
No 486
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.24 E-value=0.053 Score=42.79 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=28.7
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+|.|||+|..|..+|..++..|.+|+++.+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999986
No 487
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.23 E-value=0.062 Score=49.58 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=32.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
-.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35899999999999999999999999999998763
No 488
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.22 E-value=0.067 Score=49.04 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
+.+|+|+|+|+.|+.++..+...|.+|+++|.++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4699999999999999999999999999999876
No 489
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=94.17 E-value=0.068 Score=45.47 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=30.3
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.++|||+|.+|.=+|..++++|++|.++.+++
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~ 34 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRN 34 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccc
Confidence 57999999999999999999999999999997
No 490
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.16 E-value=0.074 Score=43.31 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=31.6
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhhccCeEEEEEcc
Q 022626 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (294)
Q Consensus 184 ~~~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~ 218 (294)
.++++|+|||||.+|..=+..|.+.|++||++...
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 35789999999999999999999999999999765
No 491
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.16 E-value=0.13 Score=47.34 Aligned_cols=55 Identities=27% Similarity=0.411 Sum_probs=41.5
Q ss_pred CCeEEEEccCCcHHHHHHHHhhccCeEEEEEccc-----------hhhhhhHhhccCCHHHHHHHH
Q 022626 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP-----------MVYLGVVLFKYVPFGWVDTLM 240 (294)
Q Consensus 186 ~~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~-----------~~~~~~~~~~~~~~~~~~~~~ 240 (294)
.-.++|||||.+|+=+|.+++.+|-+|.++++++ |+.-+-+.+...+..++...+
T Consensus 12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal 77 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREAL 77 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHH
Confidence 4579999999999999999999999999999987 334444444445555444443
No 492
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.08 E-value=0.11 Score=44.88 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCC--CeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~--~v~iie~~~ 40 (294)
.+.+|+|||+|..|.++|..|...+. ++.++|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 35799999999999999999999987 799999865
No 493
>PRK07045 putative monooxygenase; Reviewed
Probab=94.07 E-value=0.057 Score=48.12 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=31.4
Q ss_pred CeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 187 ~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
-+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 479999999999999999999999999999987
No 494
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.06 E-value=0.083 Score=45.04 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 6 ~~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
..++++|||+|..|..+|..|...|.+|++++|+.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35799999999999999999999999999999865
No 495
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.06 E-value=0.1 Score=47.59 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=32.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~~ 41 (294)
.++++|+|.|.+|+++|..|.+.|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999997664
No 496
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.06 E-value=0.084 Score=46.11 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-CeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~-~v~iie~~~ 40 (294)
..+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999998 899999875
No 497
>PRK07588 hypothetical protein; Provisional
Probab=94.05 E-value=0.058 Score=48.14 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=30.7
Q ss_pred eEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 188 ~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 69999999999999999999999999999886
No 498
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.03 E-value=0.08 Score=48.19 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCCeEEEecCC
Q 022626 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (294)
Q Consensus 7 ~~~vvIIGaG~aGl~aA~~L~~~g~~v~iie~~~ 40 (294)
.++++|+|+|.+|+++|..|++.|.+|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999999764
No 499
>PRK09126 hypothetical protein; Provisional
Probab=94.03 E-value=0.054 Score=48.31 Aligned_cols=33 Identities=36% Similarity=0.688 Sum_probs=31.0
Q ss_pred CeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 187 ~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
-+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999999985
No 500
>PLN02268 probable polyamine oxidase
Probab=94.03 E-value=0.059 Score=48.86 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=30.7
Q ss_pred CeEEEEccCCcHHHHHHHHhhccCeEEEEEccc
Q 022626 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (294)
Q Consensus 187 ~~v~VvG~G~~~~e~a~~l~~~~~~v~~~~r~~ 219 (294)
.+|+|||+|.+|+-+|..|.+.|.+|++++.++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~ 33 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRD 33 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 379999999999999999999999999998877
Done!