Query 022630
Match_columns 294
No_of_seqs 241 out of 1109
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01001 putative inner membra 100.0 1E-44 2.2E-49 367.4 17.7 182 1-208 605-793 (795)
2 PRK00145 putative inner membra 100.0 4.3E-43 9.3E-48 317.5 17.4 156 1-190 60-215 (223)
3 TIGR03592 yidC_oxa1_cterm memb 100.0 3.7E-42 8E-47 302.0 16.6 151 1-186 31-181 (181)
4 PRK02944 OxaA-like protein pre 100.0 7.2E-42 1.6E-46 315.0 16.9 151 1-186 88-242 (255)
5 PRK02463 OxaA-like protein pre 100.0 7.4E-41 1.6E-45 315.1 16.9 167 1-209 93-266 (307)
6 PRK01315 putative inner membra 100.0 4E-40 8.7E-45 312.2 20.9 181 1-187 71-257 (329)
7 PRK01318 membrane protein inse 100.0 8.3E-41 1.8E-45 334.0 16.1 153 1-190 352-510 (521)
8 PF02096 60KD_IMP: 60Kd inner 100.0 1.9E-40 4.1E-45 293.6 15.4 163 1-188 32-197 (198)
9 PRK01622 OxaA-like protein pre 100.0 3.4E-40 7.4E-45 304.1 17.3 154 1-189 93-252 (256)
10 COG0706 YidC Preprotein transl 100.0 6.6E-40 1.4E-44 310.2 15.9 159 1-190 139-299 (314)
11 PRK03449 putative inner membra 100.0 5.6E-39 1.2E-43 301.7 17.0 188 1-188 61-270 (304)
12 PRK02201 putative inner membra 100.0 3.2E-38 6.9E-43 301.7 16.3 163 1-187 162-341 (357)
13 PRK00247 putative inner membra 100.0 6.4E-38 1.4E-42 305.0 18.0 199 1-199 61-284 (429)
14 PRK02654 putative inner membra 100.0 5E-28 1.1E-32 227.4 14.5 196 1-205 56-355 (375)
15 KOG1239 Inner membrane protein 99.7 8.2E-17 1.8E-21 155.8 13.6 150 2-186 132-290 (372)
16 KOG1239 Inner membrane protein 98.4 3.9E-07 8.6E-12 88.7 6.4 187 2-194 65-255 (372)
17 COG1422 Predicted membrane pro 86.3 0.82 1.8E-05 41.1 3.6 61 1-61 74-142 (201)
18 PF09803 DUF2346: Uncharacteri 80.8 3.8 8.1E-05 31.7 4.8 41 160-203 15-55 (80)
19 PRK00247 putative inner membra 75.2 34 0.00073 34.4 10.9 22 175-196 264-285 (429)
20 PF05280 FlhC: Flagellar trans 69.2 8.1 0.00018 34.1 4.5 37 24-60 38-85 (175)
21 KOG3817 Uncharacterized conser 59.8 52 0.0011 32.5 8.3 29 138-166 250-278 (452)
22 KOG4434 Molecular chaperone SE 56.1 2.1 4.5E-05 42.1 -1.7 7 252-258 336-342 (520)
23 KOG3064 RNA-binding nuclear pr 54.1 6.3 0.00014 36.9 1.1 13 254-266 249-261 (303)
24 PF11595 DUF3245: Protein of u 49.7 16 0.00034 31.5 2.8 7 252-258 125-131 (149)
25 PF09050 SNN_linker: Stannin u 48.8 10 0.00022 22.7 1.0 14 247-261 9-22 (26)
26 KOG2475 CDC45 (cell division c 44.7 5.9 0.00013 40.5 -0.6 9 283-291 181-189 (587)
27 PF05190 MutS_IV: MutS family 39.8 46 0.00099 24.8 3.8 36 4-39 2-37 (92)
28 PF12794 MscS_TM: Mechanosensi 39.2 3.6E+02 0.0078 26.0 12.5 40 34-73 76-117 (340)
29 PF13150 DUF3989: Protein of u 37.5 43 0.00093 26.1 3.3 16 164-179 39-54 (85)
30 KOG4055 Uncharacterized conser 37.5 16 0.00034 32.6 1.0 14 158-171 71-84 (213)
31 PF09958 DUF2192: Uncharacteri 33.8 54 0.0012 30.3 3.8 27 18-44 27-53 (231)
32 KOG4075 Cytochrome c oxidase, 33.0 98 0.0021 27.2 5.1 57 3-59 53-123 (167)
33 PF05764 YL1: YL1 nuclear prot 32.9 40 0.00087 31.0 2.9 15 216-230 9-23 (240)
34 COG3763 Uncharacterized protei 31.4 1.1E+02 0.0024 23.1 4.5 26 183-208 28-54 (71)
35 PRK12722 transcriptional activ 29.7 95 0.0021 27.8 4.6 37 24-60 38-85 (187)
36 KOG3064 RNA-binding nuclear pr 29.4 38 0.00082 31.9 2.1 13 246-258 245-257 (303)
37 PF11808 DUF3329: Domain of un 29.3 2.7E+02 0.0058 21.5 8.9 22 211-232 64-85 (90)
38 KOG4815 Muscular protein impli 29.1 49 0.0011 32.1 2.9 29 259-287 63-91 (511)
39 PF07767 Nop53: Nop53 (60S rib 27.9 27 0.00058 34.2 0.9 26 252-277 249-274 (387)
40 PF10852 DUF2651: Protein of u 27.0 3E+02 0.0066 21.4 7.4 20 112-131 7-26 (82)
41 PF10332 DUF2418: Protein of u 26.3 1.4E+02 0.0031 23.8 4.7 14 158-171 20-33 (99)
42 KOG1830 Wiskott Aldrich syndro 25.7 50 0.0011 33.2 2.3 20 219-238 470-489 (518)
43 PRK12860 transcriptional activ 25.0 1.1E+02 0.0024 27.5 4.1 37 24-60 38-85 (189)
44 PF09026 CENP-B_dimeris: Centr 25.0 15 0.00032 29.4 -1.2 6 275-280 42-47 (101)
45 KOG0299 U3 snoRNP-associated p 24.8 26 0.00056 35.3 0.2 10 249-258 49-58 (479)
46 PF06783 UPF0239: Uncharacteri 23.6 60 0.0013 25.4 2.0 10 283-292 76-85 (85)
47 PF01956 DUF106: Integral memb 23.5 1.1E+02 0.0024 26.1 3.9 18 43-60 92-109 (168)
48 KOG2985 Uncharacterized conser 22.2 44 0.00095 31.4 1.1 13 279-292 250-262 (306)
49 PLN03237 DNA topoisomerase 2; 21.8 91 0.002 36.1 3.7 39 41-79 1111-1160(1465)
50 PRK10862 SoxR reducing system 21.5 2.2E+02 0.0048 24.3 5.3 14 146-159 79-92 (154)
51 COG1422 Predicted membrane pro 21.1 1.7E+02 0.0036 26.6 4.5 59 1-62 81-147 (201)
52 KOG4332 Predicted sugar transp 20.9 3.6E+02 0.0077 26.4 6.9 11 162-172 354-364 (454)
53 PF14851 FAM176: FAM176 family 20.9 75 0.0016 27.5 2.2 25 161-185 17-41 (153)
54 PF02724 CDC45: CDC45-like pro 20.8 57 0.0012 34.3 1.8 6 164-169 74-79 (622)
No 1
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1e-44 Score=367.45 Aligned_cols=182 Identities=30% Similarity=0.574 Sum_probs=153.1
Q ss_pred CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcc--cccCCC
Q 022630 1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLS 78 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gfl--Wi~dLs 78 (294)
|+.|||+|++||+|||+|++++|+|+|+|||+|||||++||||+||||||||+||++|+++. +++..+|+ |++||+
T Consensus 605 Mq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~si--eLRgasFLpgWI~DLS 682 (795)
T PRK01001 605 MQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSF--LLRGASFIPGWIDNLT 682 (795)
T ss_pred HHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhH--HhcCCchhhhhHhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999976 47788898 999999
Q ss_pred CchhHhhhhcCCCccccc--cccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCC--CCCHHhHHHHHHHHHHHHH
Q 022630 79 GPTTIAARQSGSGISWLL--PFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ--TDDPAQKNTLLVFKFLPLM 154 (294)
Q Consensus 79 ~pD~i~~~~~g~~l~~~~--p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~--~~~p~q~~~k~m~~~mPlm 154 (294)
.+|++ ++|.. +|++. ++.|||||+++++|++++++.... ..++.++.++.|+++||+|
T Consensus 683 apDpl--------f~~~~~i~FiGd----------~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPIm 744 (795)
T PRK01001 683 APDVL--------FSWETPIWFIGN----------EFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALL 744 (795)
T ss_pred CCCcc--------cccccccccccc----------chhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHH
Confidence 99964 22332 23321 577999999999999998754221 1222344456677899999
Q ss_pred HHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCCCCccccch-hhHHhhhhcc
Q 022630 155 IGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENA-SEIITAGRAK 208 (294)
Q Consensus 155 ~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~k~~~~e~~-~~~~~~~~~k 208 (294)
+++|++++||||+|||++||+|+++|++++++. .++++ ++++++|++|
T Consensus 745 f~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~------~~~kKi~a~ie~nkkk 793 (795)
T PRK01001 745 FTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKI------LDSKHLKNEVVPNKKK 793 (795)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh------cchhHHHHHHHhhhhc
Confidence 999999999999999999999999999999985 44544 8999998765
No 2
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.3e-43 Score=317.45 Aligned_cols=156 Identities=32% Similarity=0.622 Sum_probs=140.7
Q ss_pred CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCCCc
Q 022630 1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGP 80 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi~dLs~p 80 (294)
|+.+|||+++||+|||+|++++|+|+++|||||||||++||+|+|+|+|||+++|+++++++ ++.++||+|++||+.+
T Consensus 60 m~~iqP~~~~i~~k~k~d~~~~~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~--~~~~~~flW~~dLt~~ 137 (223)
T PRK00145 60 MNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLT--GINGVSFLWIKDLAKP 137 (223)
T ss_pred HHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCccChhhccCc
Confidence 67899999999999999999999999999999999999999999999999999999999986 4788999999999998
Q ss_pred hhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHh
Q 022630 81 TTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSL 160 (294)
Q Consensus 81 D~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm~~~f~~ 160 (294)
| ||++||+++++++|++++.+... ...+.+.++.|++++|+++++++.
T Consensus 138 D------------------------------p~~iLPil~~~~~~l~~~~~~~~--~~~~~~~~k~m~~~~~i~~~~~~~ 185 (223)
T PRK00145 138 D------------------------------ITWILPILSGATTYLSGYLMTKA--DSSQAGQMKTMNIGMSIFMGVMSW 185 (223)
T ss_pred c------------------------------hHHHHHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 8 68899999999999998876433 122234567889999999999999
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHhcCC
Q 022630 161 SVPSGLSIYWFTNNVLSTAQQVWLRKLGGA 190 (294)
Q Consensus 161 ~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~ 190 (294)
++|+||++||++||+|+++|+++++++..+
T Consensus 186 ~~Pagl~lYW~~s~~~si~Q~~~l~~~~~~ 215 (223)
T PRK00145 186 KFKSALVLYWVIGNLIQIIQTYFIKKLELK 215 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 999999999999999999999999986433
No 3
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=3.7e-42 Score=302.00 Aligned_cols=151 Identities=38% Similarity=0.797 Sum_probs=137.4
Q ss_pred CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCCCc
Q 022630 1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGP 80 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi~dLs~p 80 (294)
|+.+|||+++|++||++|++++++|+++|||||||||++||+|+|+|+|||+++|+++|++. ++.++||+|++||+.+
T Consensus 31 m~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pif~~~~~~lr~~~--~l~~~~flW~~dL~~~ 108 (181)
T TIGR03592 31 MQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPIFIALYQVLRRSI--ELRHAPFLWIKDLSAP 108 (181)
T ss_pred HHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhhH--HhccCCCcCccccCcc
Confidence 57899999999999999999999999999999999999999999999999999999999985 5889999999999998
Q ss_pred hhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHh
Q 022630 81 TTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSL 160 (294)
Q Consensus 81 D~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm~~~f~~ 160 (294)
| ||++||+++++++++++++.....+ ++ +.++.|++++|+++++++.
T Consensus 109 D------------------------------p~~iLPii~~~~~~~~~~~~~~~~~-~~--~~~k~m~~~~p~~~~~~~~ 155 (181)
T TIGR03592 109 D------------------------------PYYILPILMGATMFLQQKLSPSGPP-DP--AQQKIMMYIMPLMFLFFFL 155 (181)
T ss_pred c------------------------------HHHHHHHHHHHHHHHHHHhcCCCCC-CH--HHHHHHHHHHHHHHHHHHH
Confidence 7 7899999999999999987543222 22 2466788999999999999
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHH
Q 022630 161 SVPSGLSIYWFTNNVLSTAQQVWLRK 186 (294)
Q Consensus 161 ~~PsgL~LYWitSnl~ti~Q~~ilr~ 186 (294)
++|+|+++||++||+|+++|++++++
T Consensus 156 ~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 156 SFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999874
No 4
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=7.2e-42 Score=315.00 Aligned_cols=151 Identities=29% Similarity=0.700 Sum_probs=134.5
Q ss_pred CcccchhHHHHHHHhhcC----HHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccccC
Q 022630 1 MQNLQPKIKAIQQRYAGN----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPS 76 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~d----~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi~d 76 (294)
|+++|||+++||+||++| ++++|+|+++|||||||||++||+|+|+|+||||++|++++++. ++.++||+|+ |
T Consensus 88 m~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~--~l~~~~flW~-d 164 (255)
T PRK02944 88 MQALQPEMQKLKEKYSSKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTS--EISKHSFLWF-D 164 (255)
T ss_pred HHHccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhH--HHhhcCCCcc-c
Confidence 688999999999999865 56899999999999999999999999999999999999999886 4778999999 9
Q ss_pred CCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHH
Q 022630 77 LSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIG 156 (294)
Q Consensus 77 Ls~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm~~ 156 (294)
|+.+| ||++||++++++++++.++....... .+..|+.|++++|+|++
T Consensus 165 Ls~~D------------------------------p~~iLPil~~~~~~~~~~~~~~~~~~--~~~~~~~m~~i~p~~~~ 212 (255)
T PRK02944 165 LGQAD------------------------------PYYILPIVAGITTFIQQKLMMAGTAG--QNPQMAMMLWLMPIMIL 212 (255)
T ss_pred cCcch------------------------------HHHHHHHHHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHHHHH
Confidence 99887 78999999999999998864332211 12346678999999999
Q ss_pred HHHhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 022630 157 YFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 186 (294)
Q Consensus 157 ~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~ 186 (294)
+|+.++|+||.+||++||+|+++|++++++
T Consensus 213 ~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~ 242 (255)
T PRK02944 213 IFAINFPAALSLYWVVGNIFMIAQTYLIKG 242 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999997
No 5
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=7.4e-41 Score=315.06 Aligned_cols=167 Identities=27% Similarity=0.439 Sum_probs=140.0
Q ss_pred CcccchhHHHHHHHhhcC-----HHHHHHHHHHHHHHhCCCCCc--ChHHHHHHHHHHHHHHHHHHhhhhhccccCCccc
Q 022630 1 MQNLQPKIKAIQQRYAGN-----QERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFW 73 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~d-----~~k~qqE~~kLyKk~gvnPl~--GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflW 73 (294)
|+.||||+++||+||+++ ++++|+|+++|||||||||++ ||+|+|||+|||+|+|++++.. +++.+++|||
T Consensus 93 M~~lqPe~~~Iq~Kyk~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flw 170 (307)
T PRK02463 93 MAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLG 170 (307)
T ss_pred HHHhChhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeee
Confidence 678999999999999863 346789999999999999998 8999999999999999999976 4688999999
Q ss_pred ccCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHH
Q 022630 74 IPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPL 153 (294)
Q Consensus 74 i~dLs~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPl 153 (294)
+ ||+.|| ++||++++++++++..++.... .+.+.+.|+.|+++||+
T Consensus 171 i-dL~~p~--------------------------------~iLpii~~v~~~~q~~~~~~~~-~~~q~~~mk~m~~~~Pi 216 (307)
T PRK02463 171 I-DLGSPS--------------------------------LVLTAIIGVLYFFQSWLSMMGV-PEEQREQMKAMMYMMPI 216 (307)
T ss_pred e-ecCchh--------------------------------HHHHHHHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHH
Confidence 9 888654 5899999999999887654332 22233457889999999
Q ss_pred HHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCCCCccccchhhHHhhhhccc
Q 022630 154 MIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKR 209 (294)
Q Consensus 154 m~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~k~~~~e~~~~~~~~~~~k~ 209 (294)
|+++|++++|+||+|||++||+|+++|++++++++ +...++.++++.+|.
T Consensus 217 m~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~------~pk~~~~i~~e~~~~ 266 (307)
T PRK02463 217 MMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYIL------KPRLRKQIAEEFAKN 266 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999753 334456676665553
No 6
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4e-40 Score=312.21 Aligned_cols=181 Identities=29% Similarity=0.514 Sum_probs=130.8
Q ss_pred CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCCCc
Q 022630 1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGP 80 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi~dLs~p 80 (294)
|+.||||+++|++||++|++++++|+++|||||||||++||+|+|+|+||||++|++|++++.. .... .+|.+++...
T Consensus 71 m~~lqPe~~~iq~kyk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~-~~~~-~~~~~~~~~s 148 (329)
T PRK01315 71 MQEIQPKMKKIQEKYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASR-GDGI-GPINPPLLES 148 (329)
T ss_pred HHHccHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc-cchhhhHHHh
Confidence 6789999999999999999999999999999999999999999999999999999999986531 1111 2233332210
Q ss_pred hhHhhhhcCCCccccccccCCCCCCCc-chhhHHHHHHHHHHHHHHHHhHhc-C----CCCCCCHHhHHHHHHHHHHHHH
Q 022630 81 TTIAARQSGSGISWLLPFVDGHPPLGW-HDTAAYLVLPVLLVVSQYASMELM-K----PPQTDDPAQKNTLLVFKFLPLM 154 (294)
Q Consensus 81 D~i~~~~~g~~l~~~~p~~~~~~~~g~-~~~~p~~iLPiL~~~~~~ls~~i~-~----~~~~~~p~q~~~k~m~~~mPlm 154 (294)
.-.+..+|.++.. ++.... ..|+ ...+.++|||+++++++|++++.+ . .....+++.+.+++|+++||+|
T Consensus 149 -~~~~~~fg~~L~~--~f~~~~-~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim 224 (329)
T PRK01315 149 -FRHAHIFGAPLAA--TFLQAL-NAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLM 224 (329)
T ss_pred -hhccccccccccc--cccccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHH
Confidence 0000111211110 111000 0111 123467899999999999886532 1 1122355556678899999999
Q ss_pred HHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 022630 155 IGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKL 187 (294)
Q Consensus 155 ~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~ 187 (294)
+++|++++|+||+|||++||+|+++|++++.+-
T Consensus 225 ~~~~~~~fPaGL~LYW~~snl~si~Qq~~v~r~ 257 (329)
T PRK01315 225 FLVSGIAFPVGVLFYWLTSNVWTMGQQFYVIRN 257 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999987664
No 7
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=8.3e-41 Score=334.05 Aligned_cols=153 Identities=37% Similarity=0.775 Sum_probs=136.2
Q ss_pred CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcc-cccCCCC
Q 022630 1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSG 79 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gfl-Wi~dLs~ 79 (294)
|+.+||+|++||+||++|++++|+|+|+|||+|||||++||||+|+|+||||++|++++++. ++..++|+ ||+||+.
T Consensus 352 m~~lqP~~~~i~~kyk~d~~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~--el~~~~fl~Wi~DLs~ 429 (521)
T PRK01318 352 MKVLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSI--ELRHAPFIGWIHDLSA 429 (521)
T ss_pred HHHhhHHHHHHHHHhHhhHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHH--HhccCchheeeccccc
Confidence 78899999999999999999999999999999999999999999999999999999999986 47888998 9999999
Q ss_pred chhHhhhhcCCCccccccccCCCCCCCcchhhHHHHH-----HHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHH
Q 022630 80 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLM 154 (294)
Q Consensus 80 pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iL-----PiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm 154 (294)
+| ||+|| |++++++++++++++..+ .++.| +.+|.+||++
T Consensus 430 ~D------------------------------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~~q---~kim~~mpi~ 474 (521)
T PRK01318 430 PD------------------------------PYFILHIGLLPILMGITMFLQQKLNPTP--TDPMQ---AKIMKFMPLI 474 (521)
T ss_pred cc------------------------------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHH
Confidence 98 34455 999999999999876432 35554 2345569999
Q ss_pred HHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCC
Q 022630 155 IGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA 190 (294)
Q Consensus 155 ~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~ 190 (294)
+++|++++||||+|||++||+++++|++++++.++.
T Consensus 475 ~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~~~~~~ 510 (521)
T PRK01318 475 FTFFFLSFPAGLVLYWIVNNLLTIIQQYLINRRLEK 510 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999997544
No 8
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=1.9e-40 Score=293.62 Aligned_cols=163 Identities=39% Similarity=0.737 Sum_probs=144.6
Q ss_pred CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhh-hccccCCcccccCCCC
Q 022630 1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN-EGLLTEGFFWIPSLSG 79 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~-~~l~~~gflWi~dLs~ 79 (294)
|++++||+++|++||++|++++++|+++|||||||||++||+|+|+|+|||+++|+++|+++. +++.++||+|++||+.
T Consensus 32 ~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pif~~~~~~lr~~~~~~~~~~~g~lw~~dL~~ 111 (198)
T PF02096_consen 32 MQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPIFIGLFRALRRMAEVPSLATGGFLWFPDLTA 111 (198)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCceeChHhcCC
Confidence 578999999999999999999999999999999999999999999999999999999999976 5678899999999999
Q ss_pred chhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCC--CCCCCHHhHHHHHHHHHHHHHHHH
Q 022630 80 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKP--PQTDDPAQKNTLLVFKFLPLMIGY 157 (294)
Q Consensus 80 pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~--~~~~~p~q~~~k~m~~~mPlm~~~ 157 (294)
+|.. ..+||++||+++++++++++++... ....+...+.++.|++++|+++++
T Consensus 112 ~D~~-------------------------~~~p~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~ 166 (198)
T PF02096_consen 112 PDPT-------------------------MGLPYFILPILAGASMFLNQELSMKNSKQKSPQQAKMMKIMLYIMPLMFLF 166 (198)
T ss_pred CCcc-------------------------chhHHHHHHHHHHHHHHHHHHHHHhccccCCccccHHHHHHHHHHHHHHHH
Confidence 9831 1238999999999999999987532 222234455677888999999999
Q ss_pred HHhhhhhHHHHHHHHhHHHHHHHHHHHHHhc
Q 022630 158 FSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG 188 (294)
Q Consensus 158 f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~ 188 (294)
++.++|+|+.+||++||+|+++|++++++.+
T Consensus 167 ~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~ 197 (198)
T PF02096_consen 167 FTSFFPAALFLYWITSNLFSLLQTLILRRPF 197 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999853
No 9
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=3.4e-40 Score=304.07 Aligned_cols=154 Identities=27% Similarity=0.550 Sum_probs=134.2
Q ss_pred CcccchhHHHHHHHhhc--CHH---HHHHHHHHHHHHhCCCCCc-ChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccc
Q 022630 1 MQNLQPKIKAIQQRYAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWI 74 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~--d~~---k~qqE~~kLyKk~gvnPl~-GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi 74 (294)
|+++|||+++||+||++ |++ ++|+|+++|||||||||++ ||+|+|+|+|||+++|+++|++. ++.++||+|+
T Consensus 93 m~~iqP~l~~iq~kyk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~ 170 (256)
T PRK01622 93 MAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF 170 (256)
T ss_pred HHHhCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee
Confidence 57899999999999986 433 5789999999999999999 99999999999999999999975 5889999999
Q ss_pred cCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHH
Q 022630 75 PSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLM 154 (294)
Q Consensus 75 ~dLs~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm 154 (294)
||+.+| +|||+++++++++++++..+...+..+++.++.|++++|++
T Consensus 171 -dLs~~D--------------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~ 217 (256)
T PRK01622 171 -NLGHAD--------------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAM 217 (256)
T ss_pred -CCcchh--------------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHH
Confidence 898775 38999999999999887543222222334567889999999
Q ss_pred HHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhcC
Q 022630 155 IGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGG 189 (294)
Q Consensus 155 ~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~ 189 (294)
+++++.++|+||++||++||+|+++|++++++.++
T Consensus 218 ~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~~~ 252 (256)
T PRK01622 218 ILFMSFAAPSALVLYWITGGLFLMGQTIVLRKVME 252 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999753
No 10
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.6e-40 Score=310.17 Aligned_cols=159 Identities=36% Similarity=0.653 Sum_probs=137.9
Q ss_pred CcccchhHHHHHHHhh-cCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcc-cccCCC
Q 022630 1 MQNLQPKIKAIQQRYA-GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLS 78 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk-~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gfl-Wi~dLs 78 (294)
|+.+||++++|+|||| +|++++|+|+|+|||||||||++||+|+|+|+|||+++|+++++.. .+...+|+ |+.||+
T Consensus 139 m~~lqP~~~~i~~kyk~~~~~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~--~l~~~~f~~w~~dl~ 216 (314)
T COG0706 139 MQELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTV--ELRGAPFLGWITDLS 216 (314)
T ss_pred HHHhChhHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhcc--cccccchhhhhhccc
Confidence 7889999999999999 9999999999999999999999999999999999999999999986 46777887 999999
Q ss_pred CchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 022630 79 GPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYF 158 (294)
Q Consensus 79 ~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm~~~f 158 (294)
.+|+. ..+++|+++++++|+++++...... +++.+.++.|+++||+++.++
T Consensus 217 ~~dp~----------------------------~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~ 267 (314)
T COG0706 217 LPDPD----------------------------YILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFF 267 (314)
T ss_pred CCCCc----------------------------hhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHH
Confidence 88721 2336699999999999997654321 222234667899999999999
Q ss_pred HhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCC
Q 022630 159 SLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA 190 (294)
Q Consensus 159 ~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~ 190 (294)
++++|+||.|||++||+|+++|++++++.+.+
T Consensus 268 ~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~~ 299 (314)
T COG0706 268 FFNFPAGLVLYWIVSNLFSILQQYILNKPLEK 299 (314)
T ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999986433
No 11
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=5.6e-39 Score=301.71 Aligned_cols=188 Identities=27% Similarity=0.456 Sum_probs=128.8
Q ss_pred CcccchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhh--cccc-----CCccc
Q 022630 1 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE--GLLT-----EGFFW 73 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~--~l~~-----~gflW 73 (294)
|+.+||++++|++||++|++++++|+++|||||||||++||+|+|+|+|||+++|+++|+++.. ++.. +.+.+
T Consensus 61 m~~lqP~l~~iq~kyk~~~~~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~ 140 (304)
T PRK03449 61 MQELQPQIKALQKKYGNDRQKMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRN 140 (304)
T ss_pred HHHccHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccc
Confidence 6789999999999999999999999999999999999999999999999999999999998532 1111 00001
Q ss_pred ccC--CCCch---hHhhhhcCCCcc-ccc-cc--cCCCCCCCcchh-hHHHHHHHHHHHHHHHHhHhcCCC----CCCCH
Q 022630 74 IPS--LSGPT---TIAARQSGSGIS-WLL-PF--VDGHPPLGWHDT-AAYLVLPVLLVVSQYASMELMKPP----QTDDP 139 (294)
Q Consensus 74 i~d--Ls~pD---~i~~~~~g~~l~-~~~-p~--~~~~~~~g~~~~-~p~~iLPiL~~~~~~ls~~i~~~~----~~~~p 139 (294)
.++ ++..| ...+..+|.+++ |.. +. ++.....+-.|. +++++|||++++++|++++++... +..++
T Consensus 141 ~~~~~~~~~~~~sFl~~~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~ 220 (304)
T PRK03449 141 TPNYVFSAEDVQSFLDARLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANP 220 (304)
T ss_pred cccccccHHHHHHHhhhhhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCc
Confidence 000 00000 001112232222 110 00 000000111111 245678999999999998764211 11233
Q ss_pred HhH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhc
Q 022630 140 AQK-NTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG 188 (294)
Q Consensus 140 ~q~-~~k~m~~~mPlm~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~ 188 (294)
.+. .++.|+++||+|+++|++++|+||.|||++||+|+++||+++++.+
T Consensus 221 ~~~~m~k~M~~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~~ 270 (304)
T PRK03449 221 QTAMMNKLALWVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGKI 270 (304)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333 3478899999999999999999999999999999999999998743
No 12
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3.2e-38 Score=301.71 Aligned_cols=163 Identities=20% Similarity=0.392 Sum_probs=132.9
Q ss_pred CcccchhHHHHHHHhhcC------HHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccc
Q 022630 1 MQNLQPKIKAIQQRYAGN------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWI 74 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~d------~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi 74 (294)
|++||||+++||+||++| ++++|+|+++|||||||||++||+|+|+|+|||+|+|++++.+. ++....|+|+
T Consensus 162 m~~lqPel~~Iq~Kyk~~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~--~l~~~~flgi 239 (357)
T PRK02201 162 QEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLP--SIKVTTWLGI 239 (357)
T ss_pred HHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhH--hhccCCCccc
Confidence 688999999999999977 77899999999999999999999999999999999999999986 4778899999
Q ss_pred cCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcC----C---CCC----CCHHhHH
Q 022630 75 PSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMK----P---PQT----DDPAQKN 143 (294)
Q Consensus 75 ~dLs~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~----~---~~~----~~p~q~~ 143 (294)
||+.+|.. ..+ .+..+|+++++++++++++++.+++ . ..+ +.++.+.
T Consensus 240 -dLs~~~~~----------~~~-----------~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~ 297 (357)
T PRK02201 240 -DLSATSWQ----------EIF-----------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKK 297 (357)
T ss_pred -ccCCCChh----------hhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHH
Confidence 89987621 000 0112567777888877777765421 0 011 1123345
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 022630 144 TLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKL 187 (294)
Q Consensus 144 ~k~m~~~mPlm~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~ 187 (294)
++.|+++||+++++|++++|+||.|||++||+|+++|+++++++
T Consensus 298 ~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~i~~~ 341 (357)
T PRK02201 298 QNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLGIHYF 341 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999974
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=6.4e-38 Score=305.04 Aligned_cols=199 Identities=25% Similarity=0.411 Sum_probs=139.5
Q ss_pred CcccchhHHHHHHHhhcC-----HHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhh--hccccCCccc
Q 022630 1 MQNLQPKIKAIQQRYAGN-----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFW 73 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk~d-----~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~--~~l~~~gflW 73 (294)
|+.|||++++||+||+++ ++++++|+++|||+|||||++||||+|||+|||||+|++|++|+. +|+.+..+.|
T Consensus 61 m~~lqPel~~iq~kyk~~~d~e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ 140 (429)
T PRK00247 61 AAHIRPKRKALREEYKGKTDEASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQP 140 (429)
T ss_pred HHHcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 578999999999999875 457899999999999999999999999999999999999999974 3444433455
Q ss_pred ccCCCCchhHh---hhhcCCCccccccccCC-CCCCCc-chhhHHHHHHHHHHHH--HHHHhHhcCC----C-CCCCH--
Q 022630 74 IPSLSGPTTIA---ARQSGSGISWLLPFVDG-HPPLGW-HDTAAYLVLPVLLVVS--QYASMELMKP----P-QTDDP-- 139 (294)
Q Consensus 74 i~dLs~pD~i~---~~~~g~~l~~~~p~~~~-~~~~g~-~~~~p~~iLPiL~~~~--~~ls~~i~~~----~-~~~~p-- 139 (294)
+..|+..|.-. +..+|++|+-.+.+..+ ...+|. ...+.+++||++++++ +++++.+... . ...++
T Consensus 141 ig~l~~~~v~sfl~a~~fGvpL~~~~sm~~e~~~~~~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~ 220 (429)
T PRK00247 141 IGFLTSEEVESFLQGRVFNVPLPAYVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFA 220 (429)
T ss_pred cccCCHHHHHHHHhccccCCCcccccccchhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHH
Confidence 66666554322 33456555522111000 000111 1123467888555444 4566554311 1 11223
Q ss_pred --HhHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHhHHHHHHHHHHHHHhcCCCCccccchh
Q 022630 140 --AQKNTLLVFKFLPLMIGYFSLS--VPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 199 (294)
Q Consensus 140 --~q~~~k~m~~~mPlm~~~f~~~--~PsgL~LYWitSnl~ti~Q~~ilr~~~~~k~~~~e~~~ 199 (294)
+++.|..|++++|+|+++++++ +|+||+|||++||+|+++||+++..++..+++++++.+
T Consensus 221 ~~~~k~m~~m~~~~Pim~~~~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~ 284 (429)
T PRK00247 221 VGMLKFLIVMAILAPIFPLSLGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFK 284 (429)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchH
Confidence 3444667779999999988776 79999999999999999999988877777788887663
No 14
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=99.95 E-value=5e-28 Score=227.38 Aligned_cols=196 Identities=27% Similarity=0.486 Sum_probs=124.8
Q ss_pred CcccchhH----HHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhh-------------
Q 022630 1 MQNLQPKI----KAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN------------- 63 (294)
Q Consensus 1 Mq~lqPel----~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~------------- 63 (294)
|+.+||+| ++|++||++|++++|+|+++|||||| ||++||||+|||+|||+++|+++|...-
T Consensus 56 M~~LQPemqkk~~eIqeKYKdDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~p 134 (375)
T PRK02654 56 MKIAQPVMQKRQAEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLP 134 (375)
T ss_pred HHHhCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhCccccccceeecccCC
Confidence 67899998 47999999999999999999999999 9999999999999999999999997321
Q ss_pred -h---ccccCCcc------cccC---------------CCCchhH---hhhhcCCCc--------------cc-------
Q 022630 64 -E---GLLTEGFF------WIPS---------------LSGPTTI---AARQSGSGI--------------SW------- 94 (294)
Q Consensus 64 -~---~l~~~gfl------Wi~d---------------Ls~pD~i---~~~~~g~~l--------------~~------- 94 (294)
+ ......|- ++.| |..-|.. .....|.++ .|
T Consensus 135 ~~qi~~v~~~~~~~~~~~i~~~~~~h~~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~ 214 (375)
T PRK02654 135 SEQIAAVQPQPFKSKPQNIFITDGVHFPVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEE 214 (375)
T ss_pred HHHHhhhcCCCcCCCCceEEEecCccceEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCce
Confidence 0 00011110 0111 0000000 000000000 01
Q ss_pred ----------------------ccccc---------CCCCCCCcc--hh-h--HHHHHHHHHHHHHHHHhHhcCCCCCCC
Q 022630 95 ----------------------LLPFV---------DGHPPLGWH--DT-A--AYLVLPVLLVVSQYASMELMKPPQTDD 138 (294)
Q Consensus 95 ----------------------~~p~~---------~~~~~~g~~--~~-~--p~~iLPiL~~~~~~ls~~i~~~~~~~~ 138 (294)
.+|-+ ....-.|.. |. + -.+++-+..+++.|+++.+.......+
T Consensus 215 ~~~~~~~g~~~al~pgd~ti~~~ipg~aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~~~~~~ 294 (375)
T PRK02654 215 RVKVSEDGTIEALAPGDATIQGTIPGLAANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQGMPAN 294 (375)
T ss_pred eEEECCCCcEEEecCCceEEEEeecceecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcCCCCCC
Confidence 01100 000001111 11 1 234566677888888887654433445
Q ss_pred HHhHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCCCCccccchhhHHhhh
Q 022630 139 PAQKNTLLVFKFLPLMI--GYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAG 205 (294)
Q Consensus 139 p~q~~~k~m~~~mPlm~--~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~k~~~~e~~~~~~~~~ 205 (294)
|+|. .+..+.|+|+ .|+++-+|||+++||++.|+|..+|+++|.+ -++.|+...+.++.
T Consensus 295 ~qq~---t~nkitpv~~sgmflffplpagvllym~ianifq~~qt~~l~r-----eplpenlqk~~~~~ 355 (375)
T PRK02654 295 PQQS---TANKITPVMFSGMFLFFPLPAGVLLYMVIANIFQTLQTFLLSR-----EPLPENLQKILDEQ 355 (375)
T ss_pred hhHH---HHHhhhhHHHhhhHhcccchhHHHHHHHHHHHHHHHHHHHHhc-----CcChHHHHHHHHHh
Confidence 5554 5677789885 3445568999999999999999999999987 47778776666553
No 15
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=8.2e-17 Score=155.77 Aligned_cols=150 Identities=22% Similarity=0.408 Sum_probs=124.4
Q ss_pred cccchhHHHHHHHhhcC------HHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhh--hccccCCccc
Q 022630 2 QNLQPKIKAIQQRYAGN------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFW 73 (294)
Q Consensus 2 q~lqPel~~IqeKyk~d------~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~--~~l~~~gflW 73 (294)
..+.|+|.++.++.+.- ....|+|+++++++||++| ....-+++|.|+|++.|.+|+.|+. +++.++|++|
T Consensus 132 s~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~w 210 (372)
T KOG1239|consen 132 SKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLW 210 (372)
T ss_pred hhcCcccHHHHHHHHhhhccccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHh
Confidence 46789999999988631 3356779999999999999 9988889999999999999999984 4567889999
Q ss_pred ccCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCC-CCCCHHhHHHHHHHHHHH
Q 022630 74 IPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPP-QTDDPAQKNTLLVFKFLP 152 (294)
Q Consensus 74 i~dLs~pD~i~~~~~g~~l~~~~p~~~~~~~~g~~~~~p~~iLPiL~~~~~~ls~~i~~~~-~~~~p~q~~~k~m~~~mP 152 (294)
++||+.+| |++++|+++.++....+++.... ...+.....|+.++.++|
T Consensus 211 f~dLt~~d------------------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (372)
T KOG1239|consen 211 FPDLTGPD------------------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILP 260 (372)
T ss_pred cccccccC------------------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhh
Confidence 99999887 68899999999988888764321 111222334677888899
Q ss_pred HHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 022630 153 LMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 186 (294)
Q Consensus 153 lm~~~f~~~~PsgL~LYWitSnl~ti~Q~~ilr~ 186 (294)
+.++.++.++|+|+.+||+ |+++|..++|.
T Consensus 261 ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~ 290 (372)
T KOG1239|consen 261 LLSLASTMQFPSAIFVYWL----FSLVQGLVLRS 290 (372)
T ss_pred hhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH
Confidence 9999999999999999999 99999999775
No 16
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=3.9e-07 Score=88.66 Aligned_cols=187 Identities=21% Similarity=0.154 Sum_probs=149.5
Q ss_pred cccchhHHHHHHHhhcCHH--HHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCCC
Q 022630 2 QNLQPKIKAIQQRYAGNQE--RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 79 (294)
Q Consensus 2 q~lqPel~~IqeKyk~d~~--k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~~~~l~~~gflWi~dLs~ 79 (294)
...+|-...+...+...+. .+|.++..+|+-.|++++++|++..+-++.++..|.+... .+....+.+++|++.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~ 143 (372)
T KOG1239|consen 65 ATVSPIIEGILLALSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGE 143 (372)
T ss_pred HhhchhHHHHHHHhcccCchhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHH
Confidence 4456777777777877765 8999999999999999999999999999999999999986 434456788999998887
Q ss_pred chhHhhhhcCCCccccccccCCCCCCCcc-hhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 022630 80 PTTIAARQSGSGISWLLPFVDGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYF 158 (294)
Q Consensus 80 pD~i~~~~~g~~l~~~~p~~~~~~~~g~~-~~~p~~iLPiL~~~~~~ls~~i~~~~~~~~p~q~~~k~m~~~mPlm~~~f 158 (294)
.-..++...+..+.|..++...+.+.||. +...+.+++..+.++.|+.++.|..+..+.+.+ ...++|-+..+.
T Consensus 144 ~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~-----g~~wf~dLt~~d 218 (372)
T KOG1239|consen 144 ELGEAAQDNNALLSWQEEQKLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTTG-----GLLWFPDLTGPD 218 (372)
T ss_pred HHHhhhccccchHHHHHHHHhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccchh-----hHHhcccccccC
Confidence 66666666777888988888888888888 878888899999999999998887444333322 456677787888
Q ss_pred HhhhhhHHHHHHHHhHHHHHHHHHHHH-HhcCCCCcc
Q 022630 159 SLSVPSGLSIYWFTNNVLSTAQQVWLR-KLGGAKPVV 194 (294)
Q Consensus 159 ~~~~PsgL~LYWitSnl~ti~Q~~ilr-~~~~~k~~~ 194 (294)
-+..+.++..||+++++..-.|+.+.. .+.+..+.+
T Consensus 219 p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (372)
T KOG1239|consen 219 PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSF 255 (372)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHH
Confidence 888999999999999999999987766 444443333
No 17
>COG1422 Predicted membrane protein [Function unknown]
Probab=86.29 E-value=0.82 Score=41.11 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=32.6
Q ss_pred CcccchhHHHHHHHhh-----cCH---HHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhh
Q 022630 1 MQNLQPKIKAIQQRYA-----GNQ---ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV 61 (294)
Q Consensus 1 Mq~lqPel~~IqeKyk-----~d~---~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~ 61 (294)
|+++|-+++|.|++++ +|. +|+|+++++......==.--.+-||+.++++.|-+|-=++..
T Consensus 74 m~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfkPM~~~~v~tI~~F~Wl~~~ 142 (201)
T COG1422 74 MKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFKPMLYISVLTIPFFAWLRWF 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 5678889999998884 343 355555444433221000012346666655555555544443
No 18
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=80.80 E-value=3.8 Score=31.65 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHhcCCCCccccchhhHHh
Q 022630 160 LSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIIT 203 (294)
Q Consensus 160 ~~~PsgL~LYWitSnl~ti~Q~~ilr~~~~~k~~~~e~~~~~~~ 203 (294)
.+||.|+..|+ |.=.....+++......-|+-.+.....++
T Consensus 15 v~fPI~~~~~f---N~pe~f~~~v~~~~~~~~ppe~~~~~~ele 55 (80)
T PF09803_consen 15 VFFPIGMFYYF---NQPEWFEKWVIKRKRELYPPENEEIREELE 55 (80)
T ss_pred HHHHHHHHHhc---CCcHHHHHHhHHHhcccCCCCCcccHHHHH
Confidence 45777743332 434444555554433333443333333443
No 19
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=75.24 E-value=34 Score=34.43 Aligned_cols=22 Identities=9% Similarity=-0.031 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhcCCCCcccc
Q 022630 175 VLSTAQQVWLRKLGGAKPVVTE 196 (294)
Q Consensus 175 l~ti~Q~~ilr~~~~~k~~~~e 196 (294)
+-+++...++++++...+.+.|
T Consensus 264 ~Qq~i~~~~l~~~~P~~~~~~~ 285 (429)
T PRK00247 264 IQNIIMYLILERKYPLTDEFKE 285 (429)
T ss_pred HHHHHHHHHHHHhcCCCcchHH
Confidence 4455566888888887777655
No 20
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=69.20 E-value=8.1 Score=34.05 Aligned_cols=37 Identities=32% Similarity=0.608 Sum_probs=22.2
Q ss_pred HHHHHHHHH-hCCCCCcChHHHH----------HHHHHHHHHHHHHHh
Q 022630 24 LETSRLYRQ-AGVNPLAGCLPTL----------ATIPVWIGLYQALSN 60 (294)
Q Consensus 24 qE~~kLyKk-~gvnPl~GcLP~L----------iQiPIfi~ly~~lr~ 60 (294)
..+.+||++ +|++|-.|.+|.- |+.-+|+.+|+.+..
T Consensus 38 ~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~ 85 (175)
T PF05280_consen 38 ERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRK 85 (175)
T ss_dssp HHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHh
Confidence 346799999 8999999998743 677778888887775
No 21
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.77 E-value=52 Score=32.52 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=21.6
Q ss_pred CHHhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 022630 138 DPAQKNTLLVFKFLPLMIGYFSLSVPSGL 166 (294)
Q Consensus 138 ~p~q~~~k~m~~~mPlm~~~f~~~~PsgL 166 (294)
+..+...++++.++.+++++|+..+|.+.
T Consensus 250 ~RS~~ilmWtLqli~lvl~Yfsvq~p~~a 278 (452)
T KOG3817|consen 250 PRSQTILMWTLQLIGLVLAYFSVQHPSAA 278 (452)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcccHHHH
Confidence 33455567888889999999998888543
No 22
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=56.09 E-value=2.1 Score=42.05 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=3.1
Q ss_pred CCCCCcc
Q 022630 252 EGESDGE 258 (294)
Q Consensus 252 ~~~~~~~ 258 (294)
|++||+|
T Consensus 336 ~~~sD~E 342 (520)
T KOG4434|consen 336 DKGSDSE 342 (520)
T ss_pred hcCcchh
Confidence 3444444
No 23
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=54.13 E-value=6.3 Score=36.92 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=5.0
Q ss_pred CCCcccccchhHH
Q 022630 254 ESDGEKGQGVLEE 266 (294)
Q Consensus 254 ~~~~~~~~~~~~~ 266 (294)
+||||+.....|+
T Consensus 249 d~e~esd~de~Ee 261 (303)
T KOG3064|consen 249 DSEDESDSDEIEE 261 (303)
T ss_pred ccccCCchhhHHH
Confidence 3444433333444
No 24
>PF11595 DUF3245: Protein of unknown function (DUF3245); InterPro: IPR021641 This is a family of proteins conserved in fungi. The function is not known, and there is no S. cerevisiae member.
Probab=49.67 E-value=16 Score=31.54 Aligned_cols=7 Identities=29% Similarity=0.686 Sum_probs=2.8
Q ss_pred CCCCCcc
Q 022630 252 EGESDGE 258 (294)
Q Consensus 252 ~~~~~~~ 258 (294)
|++||||
T Consensus 125 ~~d~ddE 131 (149)
T PF11595_consen 125 DDDDDDE 131 (149)
T ss_pred ccccccc
Confidence 3334433
No 25
>PF09050 SNN_linker: Stannin unstructured linker; InterPro: IPR015136 This entry represents an unstructured protein region which connects two adjacent stannin helical domains. It contains a conserved CXC metal-binding motif and a putative 14-3-3-zeta binding domain. Upon coordinating dimethytin, considerable structural or dynamic changes in the flexible loop region of SNN may take place, recruiting other binding partners such as 14-3-3-zeta, and thereby initiating the apoptotic cascade []. ; PDB: 1ZZA_A.
Probab=48.78 E-value=10 Score=22.70 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=7.4
Q ss_pred cCCCCCCCCCccccc
Q 022630 247 SASDSEGESDGEKGQ 261 (294)
Q Consensus 247 ~~~~~~~~~~~~~~~ 261 (294)
|+|+ ||||..++|+
T Consensus 9 sqse-deesivgege 22 (26)
T PF09050_consen 9 SQSE-DEESIVGEGE 22 (26)
T ss_dssp -SS----TTTTTTTS
T ss_pred cccc-chhhcccCCc
Confidence 5677 8889888764
No 26
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=44.68 E-value=5.9 Score=40.54 Aligned_cols=9 Identities=56% Similarity=0.844 Sum_probs=5.5
Q ss_pred ccchhhhcc
Q 022630 283 RKSKRSKRK 291 (294)
Q Consensus 283 ~~~~~~~~~ 291 (294)
|.+||.+|+
T Consensus 181 r~~krr~rr 189 (587)
T KOG2475|consen 181 RASKRRERR 189 (587)
T ss_pred HHHHHHHHH
Confidence 666666654
No 27
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=39.80 E-value=46 Score=24.81 Aligned_cols=36 Identities=11% Similarity=0.355 Sum_probs=30.3
Q ss_pred cchhHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCc
Q 022630 4 LQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLA 39 (294)
Q Consensus 4 lqPel~~IqeKyk~d~~k~qqE~~kLyKk~gvnPl~ 39 (294)
+-|+++++++.|.+-.+.++....++-+++|++++.
T Consensus 2 ~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk 37 (92)
T PF05190_consen 2 FDEELDELREEYEEIEEELEELLEEIRKKLGIPSLK 37 (92)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 458999999999998889999999999999996653
No 28
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=39.24 E-value=3.6e+02 Score=25.95 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=24.4
Q ss_pred CCCCCcC-hHHHHHHHHHHHHHHHHHHhhhh-hccccCCccc
Q 022630 34 GVNPLAG-CLPTLATIPVWIGLYQALSNVAN-EGLLTEGFFW 73 (294)
Q Consensus 34 gvnPl~G-cLP~LiQiPIfi~ly~~lr~~~~-~~l~~~gflW 73 (294)
..+|+.. .-..+.++.++..+|..++.++. .|+...-|-|
T Consensus 76 ~~~~~~~~l~~~l~~~a~~~~~~~~~~~l~rp~Gl~~~HF~w 117 (340)
T PF12794_consen 76 WSSPFSVALGAALLAMALFWLVFEFFRRLLRPNGLAERHFGW 117 (340)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEeccCCC
Confidence 3455442 33455677777778888887775 3555555555
No 29
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=37.48 E-value=43 Score=26.09 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=14.3
Q ss_pred hHHHHHHHHhHHHHHH
Q 022630 164 SGLSIYWFTNNVLSTA 179 (294)
Q Consensus 164 sgL~LYWitSnl~ti~ 179 (294)
+++++|+++++++.++
T Consensus 39 a~l~ly~~~~ai~~~G 54 (85)
T PF13150_consen 39 AALCLYMTVSAIYDIG 54 (85)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6799999999999885
No 30
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.46 E-value=16 Score=32.64 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=6.4
Q ss_pred HHhhhhhHHHHHHH
Q 022630 158 FSLSVPSGLSIYWF 171 (294)
Q Consensus 158 f~~~~PsgL~LYWi 171 (294)
++.+.-+|-+=+-+
T Consensus 71 ~GSSAgaGSgeFHv 84 (213)
T KOG4055|consen 71 MGSSAGAGSGEFHV 84 (213)
T ss_pred ccccccCCCchhHH
Confidence 34445555444433
No 31
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=33.79 E-value=54 Score=30.26 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHhCCCCCcChHHH
Q 022630 18 NQERIQLETSRLYRQAGVNPLAGCLPT 44 (294)
Q Consensus 18 d~~k~qqE~~kLyKk~gvnPl~GcLP~ 44 (294)
|+..+-..+++.|+++|+.|+.|.-|.
T Consensus 27 ~R~~lv~~L~~~Y~~~gIeP~RG~s~~ 53 (231)
T PF09958_consen 27 DREELVELLREVYEENGIEPFRGLSPP 53 (231)
T ss_pred CHHHHHHHHHHHHHHcCCCcCCCCCcc
Confidence 688888999999999999999998653
No 32
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=33.02 E-value=98 Score=27.18 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=41.8
Q ss_pred ccchhHHHHHHHhhcCHHHH-HHHHHHHHHH----------hCCCCC---cChHHHHHHHHHHHHHHHHHH
Q 022630 3 NLQPKIKAIQQRYAGNQERI-QLETSRLYRQ----------AGVNPL---AGCLPTLATIPVWIGLYQALS 59 (294)
Q Consensus 3 ~lqPel~~IqeKyk~d~~k~-qqE~~kLyKk----------~gvnPl---~GcLP~LiQiPIfi~ly~~lr 59 (294)
++++++++|+||=|.|-..+ .+|..+||.= ++.|=+ .||...|+=+-|++++|.-++
T Consensus 53 e~~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~ 123 (167)
T KOG4075|consen 53 ELSAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNRGSNEWKTVFGVAGFFLGLTISVILFGKVR 123 (167)
T ss_pred cccHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccCCCCcccchhhHHHHHHHHHHHHHHHHhhe
Confidence 56789999999999886555 3578888872 222323 367788888888888888877
No 33
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.87 E-value=40 Score=30.97 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHhc
Q 022630 216 RAGDRFRQLKEEEKG 230 (294)
Q Consensus 216 ~~~~~~~~~~~~~~~ 230 (294)
-.|.||++|.++|..
T Consensus 9 naGnrm~~LL~~E~e 23 (240)
T PF05764_consen 9 NAGNRMKKLLEEELE 23 (240)
T ss_pred chhHHHHHHHHHHHh
Confidence 378899999988864
No 34
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.39 E-value=1.1e+02 Score=23.11 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=16.9
Q ss_pred HHHHhcCCCCccccch-hhHHhhhhcc
Q 022630 183 WLRKLGGAKPVVTENA-SEIITAGRAK 208 (294)
Q Consensus 183 ilr~~~~~k~~~~e~~-~~~~~~~~~k 208 (294)
.+.+++...|+++|+. +........|
T Consensus 28 ~~~k~lk~NPpine~~iR~M~~qmGqK 54 (71)
T COG3763 28 QMKKQLKDNPPINEEMIRMMMAQMGQK 54 (71)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHhCCC
Confidence 4556677779999987 5555444434
No 35
>PRK12722 transcriptional activator FlhC; Provisional
Probab=29.72 E-value=95 Score=27.77 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=27.7
Q ss_pred HHHHHHHHHh-CCCCCcChHH----------HHHHHHHHHHHHHHHHh
Q 022630 24 LETSRLYRQA-GVNPLAGCLP----------TLATIPVWIGLYQALSN 60 (294)
Q Consensus 24 qE~~kLyKk~-gvnPl~GcLP----------~LiQiPIfi~ly~~lr~ 60 (294)
+.+.+|||+- |++|=.|.+| .=|+--+|+.+|+.+..
T Consensus 38 ~rl~~Lyke~~G~spPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (187)
T PRK12722 38 ERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIYQFLLK 85 (187)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcccchhhHHHHHHHHHHHHHH
Confidence 3567899987 9999899988 22566677777776654
No 36
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=29.41 E-value=38 Score=31.90 Aligned_cols=13 Identities=54% Similarity=0.731 Sum_probs=5.8
Q ss_pred ccCCCCCCCCCcc
Q 022630 246 NSASDSEGESDGE 258 (294)
Q Consensus 246 ~~~~~~~~~~~~~ 258 (294)
++.||+|+|||++
T Consensus 245 ~~d~d~e~esd~d 257 (303)
T KOG3064|consen 245 DEDSDSEDESDSD 257 (303)
T ss_pred ccccccccCCchh
Confidence 3334444444444
No 37
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=29.35 E-value=2.7e+02 Score=21.48 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=13.4
Q ss_pred CCCCCchHHHHHHHHHHHhccc
Q 022630 211 VSQPSRAGDRFRQLKEEEKGKK 232 (294)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~ 232 (294)
|+-.|-.++-|..+-..+++.+
T Consensus 64 P~~~G~W~~if~~Lyr~qrr~r 85 (90)
T PF11808_consen 64 PEGSGIWGEIFDRLYRLQRRNR 85 (90)
T ss_pred CCCCCcHHHHHHHHHHHHHHHH
Confidence 4456667777777666555533
No 38
>KOG4815 consensus Muscular protein implicated in muscular dystrophy phenotype [General function prediction only]
Probab=29.12 E-value=49 Score=32.08 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.3
Q ss_pred cccchhHHHHhhcCCCCCCCCCCcccchh
Q 022630 259 KGQGVLEEAYASNRSKQVPDPSRPRKSKR 287 (294)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (294)
||+|.-||-.-|+.--.-|-++||-|+||
T Consensus 63 eerggreedsrssspmeappvggp~~gk~ 91 (511)
T KOG4815|consen 63 EERGGREEDSRSSSPMEAPPVGGPGRGKQ 91 (511)
T ss_pred hhhcCccccccccCcccCCCCCCCccccc
Confidence 66777777777778888999999999997
No 39
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=27.93 E-value=27 Score=34.19 Aligned_cols=26 Identities=31% Similarity=0.197 Sum_probs=10.4
Q ss_pred CCCCCcccccchhHHHHhhcCCCCCC
Q 022630 252 EGESDGEKGQGVLEEAYASNRSKQVP 277 (294)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (294)
++++|||++.+..+..+..+.+++..
T Consensus 249 ~~~~d~e~~~e~~~~~~~~~~~~~~~ 274 (387)
T PF07767_consen 249 EEESDDEEEWEGDEGEYELSINKPKK 274 (387)
T ss_pred cccccccccccccccccccccccccc
Confidence 34444443322222333344455544
No 40
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=27.01 E-value=3e+02 Score=21.38 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhHhc
Q 022630 112 AYLVLPVLLVVSQYASMELM 131 (294)
Q Consensus 112 p~~iLPiL~~~~~~ls~~i~ 131 (294)
..+++|++..+...+...+.
T Consensus 7 vlfi~Plli~i~sI~Gt~l~ 26 (82)
T PF10852_consen 7 VLFILPLLIIIISIIGTYLF 26 (82)
T ss_pred HHHHhhHHHHHHHHHHhhhc
Confidence 56789999888777765543
No 41
>PF10332 DUF2418: Protein of unknown function (DUF2418); InterPro: IPR018819 This entry represents the conserved 100 residue central region from a family of proteins found in fungi. It carries a characteristic EYD sequence motif. The function is not known.
Probab=26.27 E-value=1.4e+02 Score=23.77 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=6.3
Q ss_pred HHhhhhhHHHHHHH
Q 022630 158 FSLSVPSGLSIYWF 171 (294)
Q Consensus 158 f~~~~PsgL~LYWi 171 (294)
|+++-|..+.+||+
T Consensus 20 F~~FSP~hvl~~~~ 33 (99)
T PF10332_consen 20 FCLFSPIHVLIYYL 33 (99)
T ss_pred HHHcChHHHHHHHH
Confidence 33444444444444
No 42
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=25.73 E-value=50 Score=33.23 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcccccccCC
Q 022630 219 DRFRQLKEEEKGKKLNKALP 238 (294)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~ 238 (294)
.+.++..|+|++|+..-..+
T Consensus 470 rKVeeqreqeakr~~v~ndv 489 (518)
T KOG1830|consen 470 RKVEEQREQEAKREAVENDV 489 (518)
T ss_pred HHHHHHHHHHHhhccccchH
Confidence 45666677777666655554
No 43
>PRK12860 transcriptional activator FlhC; Provisional
Probab=25.02 E-value=1.1e+02 Score=27.45 Aligned_cols=37 Identities=32% Similarity=0.537 Sum_probs=28.1
Q ss_pred HHHHHHHHHh-CCCCCcChHHH----------HHHHHHHHHHHHHHHh
Q 022630 24 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSN 60 (294)
Q Consensus 24 qE~~kLyKk~-gvnPl~GcLP~----------LiQiPIfi~ly~~lr~ 60 (294)
+.+.+|||+- |++|=.|.+|. =|+--+|+.+|+.+..
T Consensus 38 ~rl~~Lyke~~G~SpPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (189)
T PRK12860 38 DRLIRLYKEVRGVSPPKGMLPFSTDWFMTWLANIHASLFYNAYRFLKN 85 (189)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcCchhhhHHHHHHHHHHHHHh
Confidence 4578999987 99998999875 2566677777777654
No 44
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=24.95 E-value=15 Score=29.45 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=0.8
Q ss_pred CCCCCC
Q 022630 275 QVPDPS 280 (294)
Q Consensus 275 ~~~~~~ 280 (294)
++|+|+
T Consensus 42 p~p~fg 47 (101)
T PF09026_consen 42 PVPEFG 47 (101)
T ss_dssp ----HH
T ss_pred cchhHH
Confidence 344443
No 45
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=24.82 E-value=26 Score=35.35 Aligned_cols=10 Identities=40% Similarity=0.292 Sum_probs=5.0
Q ss_pred CCCCCCCCcc
Q 022630 249 SDSEGESDGE 258 (294)
Q Consensus 249 ~~~~~~~~~~ 258 (294)
||++|+++++
T Consensus 49 Sd~Een~~~g 58 (479)
T KOG0299|consen 49 SDEEENSLAG 58 (479)
T ss_pred cccccccccc
Confidence 4445555554
No 46
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=23.60 E-value=60 Score=25.40 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=6.6
Q ss_pred ccchhhhccc
Q 022630 283 RKSKRSKRKR 292 (294)
Q Consensus 283 ~~~~~~~~~~ 292 (294)
|-.|-+|+||
T Consensus 76 k~rK~~KKKR 85 (85)
T PF06783_consen 76 KPRKEEKKKR 85 (85)
T ss_pred ccchhhhccC
Confidence 5556677776
No 47
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=23.45 E-value=1.1e+02 Score=26.07 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 022630 43 PTLATIPVWIGLYQALSN 60 (294)
Q Consensus 43 P~LiQiPIfi~ly~~lr~ 60 (294)
|+++.+-+++.+|..++.
T Consensus 92 ~~~~~~v~~i~i~~wi~~ 109 (168)
T PF01956_consen 92 PMFVTMVPQIPIFYWINY 109 (168)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 48
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.17 E-value=44 Score=31.39 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=7.0
Q ss_pred CCCcccchhhhccc
Q 022630 279 PSRPRKSKRSKRKR 292 (294)
Q Consensus 279 ~~~~~~~~~~~~~~ 292 (294)
|.+ ||..|+||++
T Consensus 250 ~~~-krrr~~r~~~ 262 (306)
T KOG2985|consen 250 RKE-KRRRRSRRNH 262 (306)
T ss_pred HhH-HHhhhhcccc
Confidence 444 5555666554
No 49
>PLN03237 DNA topoisomerase 2; Provisional
Probab=21.81 E-value=91 Score=36.11 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh---------cc--ccCCcccccCCCC
Q 022630 41 CLPTLATIPVWIGLYQALSNVANE---------GL--LTEGFFWIPSLSG 79 (294)
Q Consensus 41 cLP~LiQiPIfi~ly~~lr~~~~~---------~l--~~~gflWi~dLs~ 79 (294)
..==|+.||||-.-.--+..+..+ .+ .+..-+|..||..
T Consensus 1111 ~ydYLL~M~i~slT~E~~~kL~~~~~~k~~el~~l~~~t~~~lW~~DLd~ 1160 (1465)
T PLN03237 1111 DYDYLLSMAIGTLTLEKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDA 1160 (1465)
T ss_pred cchHHhcCcHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345567888887666555544321 12 1333478888764
No 50
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.51 E-value=2.2e+02 Score=24.32 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 022630 146 LVFKFLPLMIGYFS 159 (294)
Q Consensus 146 ~m~~~mPlm~~~f~ 159 (294)
.+.|++|+++++++
T Consensus 79 ~lvYllPLl~li~g 92 (154)
T PRK10862 79 LLVYMTPLVGLFLG 92 (154)
T ss_pred HHHHHHHHHHHHHH
Confidence 45577777655444
No 51
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.12 E-value=1.7e+02 Score=26.57 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=38.0
Q ss_pred CcccchhHHHHHH--------HhhcCHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHHHHHHHhhh
Q 022630 1 MQNLQPKIKAIQQ--------RYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 62 (294)
Q Consensus 1 Mq~lqPel~~Iqe--------Kyk~d~~k~qqE~~kLyKk~gvnPl~GcLP~LiQiPIfi~ly~~lr~~~ 62 (294)
|+++|-+..|.++ |....++++.+.+.+|.|.. ..|+ ..-.++.||+|.=+++.+....
T Consensus 81 m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q-fkPM--~~~~v~tI~~F~Wl~~~~~~~~ 147 (201)
T COG1422 81 MKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ-FKPM--LYISVLTIPFFAWLRWFVGTGG 147 (201)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhH--HHHHHHHHHHHHHHHHHHccCc
Confidence 4566777777765 33344555555555555543 3374 4455678999999999999864
No 52
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=20.89 E-value=3.6e+02 Score=26.39 Aligned_cols=11 Identities=9% Similarity=0.628 Sum_probs=8.0
Q ss_pred hhhHHHHHHHH
Q 022630 162 VPSGLSIYWFT 172 (294)
Q Consensus 162 ~PsgL~LYWit 172 (294)
+-+++.+||=.
T Consensus 354 ~E~cvGlfwPS 364 (454)
T KOG4332|consen 354 FEACVGLFWPS 364 (454)
T ss_pred HHHHHhhcchH
Confidence 45788888854
No 53
>PF14851 FAM176: FAM176 family
Probab=20.86 E-value=75 Score=27.50 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHH
Q 022630 161 SVPSGLSIYWFTNNVLSTAQQVWLR 185 (294)
Q Consensus 161 ~~PsgL~LYWitSnl~ti~Q~~ilr 185 (294)
..|=-+.||++.+=.++++-++.+=
T Consensus 17 ~~PE~~aLYFv~gVC~GLlLtLcll 41 (153)
T PF14851_consen 17 DNPERFALYFVSGVCAGLLLTLCLL 41 (153)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888877777777776543
No 54
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=20.79 E-value=57 Score=34.27 Aligned_cols=6 Identities=33% Similarity=0.855 Sum_probs=2.3
Q ss_pred hHHHHH
Q 022630 164 SGLSIY 169 (294)
Q Consensus 164 sgL~LY 169 (294)
..+-+|
T Consensus 74 ~~~~iy 79 (622)
T PF02724_consen 74 EDVTIY 79 (622)
T ss_pred CceEEE
Confidence 333333
Done!