Query 022630
Match_columns 294
No_of_seqs 241 out of 1109
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g9j_C Synthetic peptide, seri 33.2 9.9 0.00034 21.7 0.2 8 285-292 2-9 (26)
2 1e91_A Paired amphipathic heli 31.2 58 0.002 24.0 4.2 30 8-37 14-45 (85)
3 2cr7_A Paired amphipathic heli 27.6 59 0.002 23.7 3.7 30 8-37 17-48 (80)
4 1g1e_B SIN3A; four-helix bundl 26.0 69 0.0024 23.8 3.9 27 8-34 17-45 (89)
5 3ukx_C Bimax2 peptide; arm rep 24.7 15 0.00052 21.3 -0.0 10 283-292 3-12 (28)
6 2czy_A Paired amphipathic heli 23.5 83 0.0028 22.7 3.8 30 8-37 11-42 (77)
7 1v54_D Cytochrome C oxidase su 22.9 39 0.0013 27.9 2.1 30 3-32 32-62 (147)
8 2f05_A Paired amphipathic heli 20.5 85 0.0029 24.2 3.5 30 8-37 14-45 (105)
9 1zza_A Stannin, AG8_1; helix, 19.8 42 0.0014 24.6 1.4 13 247-260 44-56 (90)
10 2y69_D Cytochrome C oxidase su 19.3 53 0.0018 27.7 2.2 30 2-31 53-83 (169)
No 1
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=33.15 E-value=9.9 Score=21.73 Aligned_cols=8 Identities=75% Similarity=0.995 Sum_probs=4.2
Q ss_pred chhhhccc
Q 022630 285 SKRSKRKR 292 (294)
Q Consensus 285 ~~~~~~~~ 292 (294)
.||-||||
T Consensus 2 rkrpkrkr 9 (26)
T 4g9j_C 2 RKRPKRKR 9 (26)
T ss_pred Cccccccc
Confidence 35555554
No 2
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=31.16 E-value=58 Score=24.02 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCHHHHHH--HHHHHHHHhCCCC
Q 022630 8 IKAIQQRYAGNQERIQL--ETSRLYRQAGVNP 37 (294)
Q Consensus 8 l~~IqeKyk~d~~k~qq--E~~kLyKk~gvnP 37 (294)
+++|+++|.++++...+ ++++-|++..++.
T Consensus 14 v~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~ 45 (85)
T 1e91_A 14 VNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (85)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHccccc
Confidence 67899999999998775 8999999998764
No 3
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=27.65 E-value=59 Score=23.70 Aligned_cols=30 Identities=7% Similarity=0.324 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCHHHHHH--HHHHHHHHhCCCC
Q 022630 8 IKAIQQRYAGNQERIQL--ETSRLYRQAGVNP 37 (294)
Q Consensus 8 l~~IqeKyk~d~~k~qq--E~~kLyKk~gvnP 37 (294)
++++++++.++++...+ ++|+-|++..++.
T Consensus 17 l~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~ 48 (80)
T 2cr7_A 17 LDQVKIRFGSDPATYNGFLEIMKEFKSQSIDT 48 (80)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHhcCCCH
Confidence 68899999999988775 7899999877654
No 4
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=25.97 E-value=69 Score=23.83 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCHHHHHH--HHHHHHHHhC
Q 022630 8 IKAIQQRYAGNQERIQL--ETSRLYRQAG 34 (294)
Q Consensus 8 l~~IqeKyk~d~~k~qq--E~~kLyKk~g 34 (294)
+++|+++|.++++...+ +++.-|+++.
T Consensus 17 vnkVK~rF~~~p~~Y~~FL~IL~~y~~~~ 45 (89)
T 1g1e_B 17 VNKIKNRFQGQPDIYKAFLEILHTYQKEQ 45 (89)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHhcc
Confidence 67899999999988775 7888887653
No 5
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=24.72 E-value=15 Score=21.28 Aligned_cols=10 Identities=60% Similarity=1.006 Sum_probs=4.0
Q ss_pred ccchhhhccc
Q 022630 283 RKSKRSKRKR 292 (294)
Q Consensus 283 ~~~~~~~~~~ 292 (294)
||..|.||||
T Consensus 3 rrrrrrkrkr 12 (28)
T 3ukx_C 3 RRRRRRKRKR 12 (28)
T ss_dssp ---CCCCCCC
T ss_pred hhHHHHHhhc
Confidence 3445556665
No 6
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=23.51 E-value=83 Score=22.67 Aligned_cols=30 Identities=7% Similarity=0.324 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCHHHHHH--HHHHHHHHhCCCC
Q 022630 8 IKAIQQRYAGNQERIQL--ETSRLYRQAGVNP 37 (294)
Q Consensus 8 l~~IqeKyk~d~~k~qq--E~~kLyKk~gvnP 37 (294)
++++++++.++++...+ ++|+-|++..++.
T Consensus 11 l~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~ 42 (77)
T 2czy_A 11 LDQVKIRFGSDPATYNGFLEIMKEFKSQSIDT 42 (77)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHcCCCH
Confidence 67899999999987775 7888898876654
No 7
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=22.89 E-value=39 Score=27.89 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=23.3
Q ss_pred ccchhHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 022630 3 NLQPKIKAIQQRYAGNQERI-QLETSRLYRQ 32 (294)
Q Consensus 3 ~lqPel~~IqeKyk~d~~k~-qqE~~kLyKk 32 (294)
.|.|++.+|+||-|+|-.++ .+|..+||+-
T Consensus 32 ~lt~~i~aLreKeKgdWk~LT~eEKkAlYri 62 (147)
T 1v54_D 32 NLSASQKALKEKEKASWSSLSIDEKVELYRL 62 (147)
T ss_dssp CCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhcCCHHHcCHHHHHHHHHH
Confidence 46899999999999996554 3567778763
No 8
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=20.47 E-value=85 Score=24.19 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCHHHHHH--HHHHHHHHhCCCC
Q 022630 8 IKAIQQRYAGNQERIQL--ETSRLYRQAGVNP 37 (294)
Q Consensus 8 l~~IqeKyk~d~~k~qq--E~~kLyKk~gvnP 37 (294)
+++|+++|.++++...+ ++++-|++..++.
T Consensus 14 vnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~ 45 (105)
T 2f05_A 14 VNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (105)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHhccccc
Confidence 67899999999998775 8999999998875
No 9
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=19.76 E-value=42 Score=24.63 Aligned_cols=13 Identities=38% Similarity=0.355 Sum_probs=8.0
Q ss_pred cCCCCCCCCCcccc
Q 022630 247 SASDSEGESDGEKG 260 (294)
Q Consensus 247 ~~~~~~~~~~~~~~ 260 (294)
++|| ||||..+||
T Consensus 44 ~qse-deesivgeg 56 (90)
T 1zza_A 44 SQSE-DEESIVGDG 56 (90)
T ss_dssp CSSC-CCTTTTTTT
T ss_pred hccc-cchhhccCC
Confidence 3455 677776654
No 10
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=19.34 E-value=53 Score=27.68 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHhhcCHHHH-HHHHHHHHH
Q 022630 2 QNLQPKIKAIQQRYAGNQERI-QLETSRLYR 31 (294)
Q Consensus 2 q~lqPel~~IqeKyk~d~~k~-qqE~~kLyK 31 (294)
..+.|++.+|+||-|+|-.++ .+|..+||.
T Consensus 53 ~~~t~~i~aLreKEKgdWk~LT~eEKKAlYr 83 (169)
T 2y69_D 53 KNLSASQKALKEKEKASWSSLSIDEKVELYR 83 (169)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhcCCHHHcCHHHHHHHHH
Done!