Query 022630
Match_columns 294
No_of_seqs 241 out of 1109
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 08:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022630.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022630hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 26.4 15 0.0011 28.3 2.2 31 2-32 28-59 (144)
2 d2avue1 e.64.1.1 (E:5-160) Fla 22.6 60 0.0044 24.9 5.2 36 25-60 35-81 (156)
3 d2f05a1 a.59.1.1 (A:1-85) Sin3 17.7 65 0.0047 21.7 4.0 31 8-38 14-46 (85)
4 d1v54m_ f.23.7.1 (M:) Mitochon 17.5 54 0.004 19.9 3.0 19 154-176 20-38 (43)
5 d1lvaa3 a.4.5.35 (A:511-574) C 17.0 35 0.0026 22.0 2.2 22 17-38 3-24 (64)
6 d1s5qb_ a.59.1.1 (B:) Sin3A {M 14.6 81 0.0059 21.4 3.9 26 8-33 17-44 (89)
7 d1ryka_ a.60.11.1 (A:) Hypothe 10.8 1.3E+02 0.0096 19.5 3.9 27 9-35 41-67 (69)
8 d2hepa1 a.2.21.1 (A:1-42) Hypo 8.4 1.9E+02 0.014 17.2 3.5 28 6-33 5-37 (42)
9 d2cvba1 c.47.1.10 (A:2-188) Pr 6.9 1.2E+02 0.0085 23.0 2.5 34 4-37 50-97 (187)
10 d2gf5a1 a.77.1.2 (A:89-191) FA 6.4 3E+02 0.022 18.2 4.4 32 6-37 36-68 (103)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.40 E-value=15 Score=28.28 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.7
Q ss_pred cccchhHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 022630 2 QNLQPKIKAIQQRYAGNQERI-QLETSRLYRQ 32 (294)
Q Consensus 2 q~lqPel~~IqeKyk~d~~k~-qqE~~kLyKk 32 (294)
+++.|++.+|+||-|+|-.++ .+|..+||+-
T Consensus 28 ~e~t~ei~aLreKeKgdWk~LS~eEKkalYri 59 (144)
T d1v54d_ 28 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 59 (144)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhCChhhcCHHHHHHHHHH
Confidence 567899999999999996555 3567888873
No 2
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=22.58 E-value=60 Score=24.92 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=28.5
Q ss_pred HHHHHHHH-hCCCCCcChHHH----------HHHHHHHHHHHHHHHh
Q 022630 25 ETSRLYRQ-AGVNPLAGCLPT----------LATIPVWIGLYQALSN 60 (294)
Q Consensus 25 E~~kLyKk-~gvnPl~GcLP~----------LiQiPIfi~ly~~lr~ 60 (294)
++.+|||+ +|++|-.|.+|. -|+--+|+.+|+.+.+
T Consensus 35 ~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~ 81 (156)
T d2avue1 35 RLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 81 (156)
T ss_dssp HHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHh
Confidence 46899998 999998897752 3677888888887764
No 3
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.70 E-value=65 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCHHHHHH--HHHHHHHHhCCCCC
Q 022630 8 IKAIQQRYAGNQERIQL--ETSRLYRQAGVNPL 38 (294)
Q Consensus 8 l~~IqeKyk~d~~k~qq--E~~kLyKk~gvnPl 38 (294)
++++++++.++++...+ +++..|+++.++..
T Consensus 14 l~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~ 46 (85)
T d2f05a1 14 VNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTK 46 (85)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhhcccc
Confidence 67899999999988776 78999998877653
No 4
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.51 E-value=54 Score=19.88 Aligned_cols=19 Identities=21% Similarity=0.658 Sum_probs=13.0
Q ss_pred HHHHHHhhhhhHHHHHHHHhHHH
Q 022630 154 MIGYFSLSVPSGLSIYWFTNNVL 176 (294)
Q Consensus 154 m~~~f~~~~PsgL~LYWitSnl~ 176 (294)
.++|+++-.|+| |+.||+=
T Consensus 20 t~~f~~~L~PaG----wVLshLe 38 (43)
T d1v54m_ 20 SVTFLSFLLPAG----WVLYHLD 38 (43)
T ss_dssp HHHHHHHHHHHH----HHHHTHH
T ss_pred HHHHHHHHccHH----HHHHHHH
Confidence 334567778998 7777764
No 5
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=16.96 E-value=35 Score=21.98 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=18.7
Q ss_pred cCHHHHHHHHHHHHHHhCCCCC
Q 022630 17 GNQERIQLETSRLYRQAGVNPL 38 (294)
Q Consensus 17 ~d~~k~qqE~~kLyKk~gvnPl 38 (294)
.|++++.+.+..+|++.|..|-
T Consensus 3 ~~q~~l~~~I~~~~~~~g~~PP 24 (64)
T d1lvaa3 3 ETQKKLLKDLEDKYRVSRWQPP 24 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 4567788899999999999984
No 6
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.56 E-value=81 Score=21.44 Aligned_cols=26 Identities=19% Similarity=0.479 Sum_probs=20.9
Q ss_pred HHHHHHHhhcCHHHHHH--HHHHHHHHh
Q 022630 8 IKAIQQRYAGNQERIQL--ETSRLYRQA 33 (294)
Q Consensus 8 l~~IqeKyk~d~~k~qq--E~~kLyKk~ 33 (294)
+++++++|.+++++..+ +++..|++.
T Consensus 17 l~kVK~~f~d~p~~Y~~FL~il~~f~~~ 44 (89)
T d1s5qb_ 17 VNKIKNRFQGQPDIYKAFLEILHTYQKE 44 (89)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 67899999999987765 778888765
No 7
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=10.82 E-value=1.3e+02 Score=19.49 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=21.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhCC
Q 022630 9 KAIQQRYAGNQERIQLETSRLYRQAGV 35 (294)
Q Consensus 9 ~~IqeKyk~d~~k~qqE~~kLyKk~gv 35 (294)
-.||++|..-++...++..++..+|..
T Consensus 41 Gk~Q~~yG~~kd~a~~~v~~~~~r~~~ 67 (69)
T d1ryka_ 41 GKIQERYGYQKDQAEKEVVDWETRNEY 67 (69)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCC
Confidence 367888988888888888888888753
No 8
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=8.44 E-value=1.9e+02 Score=17.17 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=15.7
Q ss_pred hhHHHHHHHhhcCH-----HHHHHHHHHHHHHh
Q 022630 6 PKIKAIQQRYAGNQ-----ERIQLETSRLYRQA 33 (294)
Q Consensus 6 Pel~~IqeKyk~d~-----~k~qqE~~kLyKk~ 33 (294)
-.|+.|++=++..+ ..-.+|+++|.++|
T Consensus 5 ~~i~RINeLakK~K~~gLT~~E~~EQ~~LR~eY 37 (42)
T d2hepa1 5 AKIARINELAAKAKAGVITEEEKAEQQKLRQEY 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 35666766554332 12345677777765
No 9
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}
Probab=6.93 E-value=1.2e+02 Score=22.96 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=24.5
Q ss_pred cchhHHHHHHHhhcC--------------HHHHHHHHHHHHHHhCCCC
Q 022630 4 LQPKIKAIQQRYAGN--------------QERIQLETSRLYRQAGVNP 37 (294)
Q Consensus 4 lqPel~~IqeKyk~d--------------~~k~qqE~~kLyKk~gvnP 37 (294)
--|+|++++++|+++ .+.-.+++.+.-+++|++.
T Consensus 50 ~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~ 97 (187)
T d2cvba1 50 SIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFF 97 (187)
T ss_dssp THHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCS
T ss_pred hhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcc
Confidence 358999999999753 1223456778888998874
No 10
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.42 E-value=3e+02 Score=18.23 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=20.3
Q ss_pred hhHHHHHHHhhcCH-HHHHHHHHHHHHHhCCCC
Q 022630 6 PKIKAIQQRYAGNQ-ERIQLETSRLYRQAGVNP 37 (294)
Q Consensus 6 Pel~~IqeKyk~d~-~k~qqE~~kLyKk~gvnP 37 (294)
.+|+.|+.+|.+|. ++..+-+..-++++|-+.
T Consensus 36 ~~I~~I~~~~~~~~~e~~~~mL~~W~~~~g~~a 68 (103)
T d2gf5a1 36 TKIDSIEDRYPRNLTERVRESLRIWKNTEKENA 68 (103)
T ss_dssp HHHHHHHHHSSSCSHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCc
Confidence 67899999998774 443333444455666553
Done!