Query 022631
Match_columns 294
No_of_seqs 235 out of 1744
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02331 phosphoribosylglycina 100.0 1.7E-54 3.7E-59 387.5 26.7 207 82-288 1-207 (207)
2 COG0299 PurN Folate-dependent 100.0 6.7E-54 1.5E-58 375.6 21.5 196 81-281 1-196 (200)
3 TIGR00655 PurU formyltetrahydr 100.0 2.5E-49 5.5E-54 368.6 25.3 209 64-280 68-276 (280)
4 PRK13010 purU formyltetrahydro 100.0 5.4E-49 1.2E-53 367.8 25.6 207 67-281 80-286 (289)
5 PRK06027 purU formyltetrahydro 100.0 9.2E-49 2E-53 366.0 24.5 205 69-281 78-282 (286)
6 KOG3076 5'-phosphoribosylglyci 100.0 5.4E-49 1.2E-53 341.1 21.0 199 79-282 5-205 (206)
7 PLN02828 formyltetrahydrofolat 100.0 4.7E-48 1E-52 357.2 24.9 204 65-278 52-261 (268)
8 PRK13011 formyltetrahydrofolat 100.0 4.9E-48 1.1E-52 361.1 24.6 205 69-281 78-282 (286)
9 TIGR00639 PurN phosphoribosylg 100.0 1.2E-47 2.7E-52 339.2 24.1 189 81-274 1-189 (190)
10 PRK05647 purN phosphoribosylgl 100.0 1.1E-47 2.4E-52 342.0 23.6 197 80-281 1-197 (200)
11 PF00551 Formyl_trans_N: Formy 100.0 1.2E-42 2.6E-47 304.4 17.8 181 81-266 1-181 (181)
12 PLN02285 methionyl-tRNA formyl 100.0 1.8E-40 4E-45 316.2 22.6 187 78-273 4-202 (334)
13 COG0223 Fmt Methionyl-tRNA for 100.0 1.1E-38 2.3E-43 299.3 21.0 159 108-278 25-193 (307)
14 PRK06988 putative formyltransf 100.0 7.6E-38 1.6E-42 295.7 21.9 181 80-278 2-191 (312)
15 COG0788 PurU Formyltetrahydrof 100.0 4.2E-38 9.1E-43 286.2 19.0 212 64-283 74-285 (287)
16 PRK00005 fmt methionyl-tRNA fo 100.0 9.2E-37 2E-41 287.8 23.8 183 81-279 1-193 (309)
17 TIGR00460 fmt methionyl-tRNA f 100.0 1.4E-36 3.1E-41 287.1 23.4 181 82-278 2-192 (313)
18 PRK08125 bifunctional UDP-gluc 100.0 5.6E-34 1.2E-38 292.5 23.7 182 82-279 2-190 (660)
19 PRK07579 hypothetical protein; 100.0 1.1E-32 2.4E-37 251.6 18.7 173 80-277 1-175 (245)
20 KOG3082 Methionyl-tRNA formylt 99.9 1.2E-25 2.6E-30 207.7 7.9 138 121-272 52-190 (338)
21 KOG2452 Formyltetrahydrofolate 99.8 3.6E-21 7.8E-26 186.6 10.5 190 81-282 1-199 (881)
22 COG2102 Predicted ATPases of P 94.0 0.32 6.9E-06 44.4 8.5 81 81-166 1-93 (223)
23 TIGR00290 MJ0570_dom MJ0570-re 93.0 0.52 1.1E-05 43.1 8.3 85 82-175 2-98 (223)
24 PF01902 ATP_bind_4: ATP-bindi 92.9 0.3 6.4E-06 44.4 6.4 88 81-177 1-100 (218)
25 cd01994 Alpha_ANH_like_IV This 91.4 1.1 2.3E-05 39.9 8.1 85 82-174 1-100 (194)
26 TIGR00289 conserved hypothetic 91.1 1.2 2.5E-05 40.7 8.2 85 81-174 1-97 (222)
27 PRK08300 acetaldehyde dehydrog 89.6 1.3 2.8E-05 42.3 7.5 52 79-134 3-55 (302)
28 PF01408 GFO_IDH_MocA: Oxidore 89.2 1.6 3.4E-05 34.5 6.7 70 82-168 2-71 (120)
29 KOG3857 Alcohol dehydrogenase, 89.2 3.7 8E-05 40.2 10.1 225 14-274 7-253 (465)
30 TIGR03215 ac_ald_DH_ac acetald 86.8 3.3 7.2E-05 39.2 8.2 73 80-168 1-73 (285)
31 PF00185 OTCace: Aspartate/orn 86.2 3.7 8E-05 35.1 7.6 99 80-198 2-126 (158)
32 TIGR03590 PseG pseudaminic aci 84.1 4.1 8.8E-05 37.9 7.4 77 89-168 13-89 (279)
33 TIGR01133 murG undecaprenyldip 77.2 13 0.00028 34.4 8.3 83 82-168 2-99 (348)
34 PRK05472 redox-sensing transcr 74.7 18 0.00039 32.2 8.2 101 80-197 84-187 (213)
35 PRK05447 1-deoxy-D-xylulose 5- 73.6 17 0.00037 35.9 8.3 57 80-137 1-57 (385)
36 cd01992 PP-ATPase N-terminal d 72.8 36 0.00078 28.9 9.4 88 82-170 1-107 (185)
37 COG0482 TrmU Predicted tRNA(5- 72.7 9.8 0.00021 37.2 6.3 92 79-174 2-131 (356)
38 TIGR02432 lysidine_TilS_N tRNA 72.7 27 0.00058 30.0 8.6 88 82-170 1-110 (189)
39 PRK12446 undecaprenyldiphospho 72.1 12 0.00025 36.1 6.8 83 81-167 2-99 (352)
40 TIGR01761 thiaz-red thiazoliny 68.2 12 0.00025 36.4 5.8 50 80-133 3-52 (343)
41 COG0673 MviM Predicted dehydro 68.1 15 0.00032 34.2 6.4 73 79-167 2-75 (342)
42 PRK14664 tRNA-specific 2-thiou 67.4 36 0.00078 33.3 9.0 89 80-172 5-121 (362)
43 PLN02342 ornithine carbamoyltr 67.2 33 0.00071 33.4 8.7 26 170-197 287-312 (348)
44 COG0707 MurG UDP-N-acetylgluco 65.7 32 0.0007 33.5 8.3 106 81-190 1-122 (357)
45 PRK14665 mnmA tRNA-specific 2- 64.5 36 0.00078 33.2 8.4 89 80-171 5-125 (360)
46 PRK00143 mnmA tRNA-specific 2- 64.2 35 0.00075 33.0 8.2 89 81-172 1-129 (346)
47 TIGR00243 Dxr 1-deoxy-D-xylulo 64.1 23 0.0005 35.1 7.0 56 81-137 2-57 (389)
48 PRK04284 ornithine carbamoyltr 63.3 52 0.0011 31.7 9.2 27 170-198 253-280 (332)
49 TIGR03679 arCOG00187 arCOG0018 63.0 27 0.00059 31.4 6.9 76 85-165 2-92 (218)
50 PRK00726 murG undecaprenyldiph 62.4 45 0.00097 31.2 8.5 85 81-169 2-101 (357)
51 PRK10696 tRNA 2-thiocytidine b 61.9 19 0.00042 33.0 5.8 89 80-168 29-140 (258)
52 PF03807 F420_oxidored: NADP o 60.3 23 0.00049 26.8 5.1 75 82-174 1-76 (96)
53 COG1454 EutG Alcohol dehydroge 59.7 44 0.00096 33.0 8.1 78 93-172 16-99 (377)
54 PLN02696 1-deoxy-D-xylulose-5- 59.2 54 0.0012 33.2 8.7 57 80-137 57-113 (454)
55 TIGR03025 EPS_sugtrans exopoly 58.3 50 0.0011 32.6 8.4 70 80-166 125-195 (445)
56 PF03054 tRNA_Me_trans: tRNA m 58.0 16 0.00035 35.7 4.7 102 81-191 1-143 (356)
57 PLN02871 UDP-sulfoquinovose:DA 57.2 1.1E+02 0.0023 30.2 10.6 83 78-167 56-152 (465)
58 PRK09590 celB cellobiose phosp 57.2 62 0.0013 25.9 7.3 36 122-157 67-102 (104)
59 COG0394 Wzb Protein-tyrosine-p 56.1 26 0.00057 29.4 5.2 78 80-168 2-85 (139)
60 TIGR00661 MJ1255 conserved hyp 55.7 1.3E+02 0.0028 28.0 10.4 45 151-197 85-129 (321)
61 PRK02255 putrescine carbamoylt 55.3 1E+02 0.0022 29.9 9.6 26 170-197 252-277 (338)
62 PF01171 ATP_bind_3: PP-loop f 54.9 40 0.00087 29.0 6.3 86 82-168 1-105 (182)
63 PRK10886 DnaA initiator-associ 54.4 43 0.00094 29.8 6.5 32 107-138 109-144 (196)
64 PRK04523 N-acetylornithine car 53.2 1.4E+02 0.003 28.9 10.3 25 171-198 276-300 (335)
65 COG2266 GTP:adenosylcobinamide 52.9 81 0.0018 28.0 7.8 67 108-181 42-108 (177)
66 PRK13304 L-aspartate dehydroge 52.2 46 0.001 30.7 6.6 50 81-133 2-51 (265)
67 cd01987 USP_OKCHK USP domain i 52.1 1E+02 0.0022 23.9 7.9 42 123-170 55-96 (124)
68 cd03807 GT1_WbnK_like This fam 51.6 1.2E+02 0.0027 26.8 9.2 97 94-193 18-117 (365)
69 PRK13302 putative L-aspartate 51.5 53 0.0012 30.5 6.9 52 78-132 4-55 (271)
70 PHA00771 head assembly protein 51.0 16 0.00035 30.8 3.0 53 184-237 62-114 (151)
71 cd05017 SIS_PGI_PMI_1 The memb 50.4 56 0.0012 26.0 6.1 55 80-139 43-99 (119)
72 PF02601 Exonuc_VII_L: Exonucl 50.3 1.5E+02 0.0033 27.8 10.0 104 74-179 8-125 (319)
73 cd03785 GT1_MurG MurG is an N- 50.3 93 0.002 28.7 8.4 83 82-168 1-98 (350)
74 TIGR03022 WbaP_sugtrans Undeca 49.6 1.2E+02 0.0026 30.0 9.5 110 80-193 125-252 (456)
75 COG0603 Predicted PP-loop supe 49.0 67 0.0015 29.4 6.9 56 79-137 1-62 (222)
76 KOG2862 Alanine-glyoxylate ami 48.8 83 0.0018 30.7 7.7 77 85-166 71-149 (385)
77 COG2257 Uncharacterized homolo 48.7 40 0.00086 26.7 4.6 28 122-161 37-64 (92)
78 TIGR00512 salvage_mtnA S-methy 48.6 66 0.0014 31.2 7.2 77 82-172 147-237 (331)
79 PRK13365 protocatechuate 4,5-d 48.4 34 0.00074 32.1 5.1 45 149-195 38-84 (279)
80 PRK00779 ornithine carbamoyltr 48.4 1.4E+02 0.003 28.4 9.3 38 159-198 217-271 (304)
81 TIGR03023 WcaJ_sugtrans Undeca 48.2 73 0.0016 31.5 7.7 70 80-166 128-198 (451)
82 PF02254 TrkA_N: TrkA-N domain 48.1 1E+02 0.0022 23.8 7.2 69 85-166 1-69 (116)
83 PRK00286 xseA exodeoxyribonucl 47.8 1.2E+02 0.0026 30.0 9.1 100 77-178 132-241 (438)
84 TIGR00670 asp_carb_tr aspartat 46.7 1.3E+02 0.0028 28.6 8.8 24 171-198 244-267 (301)
85 TIGR03316 ygeW probable carbam 46.0 2E+02 0.0042 28.2 10.1 26 171-198 293-320 (357)
86 PLN03209 translocon at the inn 45.3 1.6E+02 0.0036 30.7 9.9 34 81-116 80-113 (576)
87 PRK13814 pyrB aspartate carbam 45.2 2.3E+02 0.0051 27.0 10.3 102 92-197 137-269 (310)
88 COG0205 PfkA 6-phosphofructoki 44.9 1E+02 0.0022 30.2 7.9 106 79-187 1-124 (347)
89 PF01976 DUF116: Protein of un 44.8 38 0.00082 29.2 4.5 60 122-190 78-142 (158)
90 PF04007 DUF354: Protein of un 44.3 45 0.00099 32.2 5.4 73 92-168 14-92 (335)
91 PRK09536 btuD corrinoid ABC tr 44.1 1.4E+02 0.003 29.5 8.9 77 85-168 270-347 (402)
92 cd08193 HVD 5-hydroxyvalerate 43.9 1.2E+02 0.0027 29.2 8.4 82 89-173 10-97 (376)
93 PF00448 SRP54: SRP54-type pro 43.8 68 0.0015 28.3 6.1 82 82-171 2-95 (196)
94 PRK13938 phosphoheptose isomer 43.7 61 0.0013 28.8 5.8 32 107-138 113-148 (196)
95 PRK13530 arsenate reductase; P 43.5 45 0.00098 27.6 4.6 74 80-167 3-82 (133)
96 PRK10660 tilS tRNA(Ile)-lysidi 43.4 71 0.0015 31.9 6.8 58 80-137 15-82 (436)
97 cd08190 HOT Hydroxyacid-oxoaci 43.3 1.2E+02 0.0026 29.9 8.3 81 89-172 7-93 (414)
98 TIGR01284 alt_nitrog_alph nitr 43.3 1.7E+02 0.0037 29.3 9.5 106 79-198 324-433 (457)
99 cd01998 tRNA_Me_trans tRNA met 43.1 92 0.002 30.1 7.3 88 82-172 1-126 (349)
100 PRK03868 glucose-6-phosphate i 42.9 52 0.0011 32.7 5.7 58 80-138 111-174 (410)
101 PRK00973 glucose-6-phosphate i 42.7 56 0.0012 32.9 5.9 58 80-138 132-197 (446)
102 cd08551 Fe-ADH iron-containing 42.6 1.3E+02 0.0027 29.0 8.2 78 93-172 10-93 (370)
103 PRK13376 pyrB bifunctional asp 42.6 1.2E+02 0.0027 31.2 8.4 28 169-198 272-299 (525)
104 PF13477 Glyco_trans_4_2: Glyc 42.5 1.7E+02 0.0036 23.1 8.1 106 82-192 1-111 (139)
105 PRK10624 L-1,2-propanediol oxi 42.4 1.2E+02 0.0027 29.4 8.2 81 89-172 14-100 (382)
106 cd08182 HEPD Hydroxyethylphosp 42.2 1E+02 0.0022 29.7 7.5 63 110-172 25-90 (367)
107 PRK00994 F420-dependent methyl 41.8 1.7E+02 0.0036 27.5 8.3 102 53-167 7-117 (277)
108 TIGR00177 molyb_syn molybdenum 41.8 46 0.00099 27.7 4.4 43 121-168 31-75 (144)
109 PF02492 cobW: CobW/HypB/UreG, 41.6 40 0.00086 28.9 4.2 87 86-176 9-101 (178)
110 TIGR00268 conserved hypothetic 41.5 84 0.0018 28.7 6.5 56 80-138 12-73 (252)
111 COG0037 MesJ tRNA(Ile)-lysidin 40.8 2.2E+02 0.0048 26.0 9.3 90 80-170 21-131 (298)
112 cd08176 LPO Lactadehyde:propan 40.8 1.2E+02 0.0026 29.4 7.7 81 89-172 12-98 (377)
113 cd01993 Alpha_ANH_like_II This 40.7 78 0.0017 26.6 5.8 56 82-138 1-68 (185)
114 TIGR00420 trmU tRNA (5-methyla 40.5 42 0.0009 32.6 4.5 55 81-138 1-71 (352)
115 PRK04148 hypothetical protein; 40.1 1.9E+02 0.0041 24.3 7.9 83 80-170 17-113 (134)
116 PF02670 DXP_reductoisom: 1-de 39.9 63 0.0014 27.0 4.9 53 84-137 2-54 (129)
117 PRK15454 ethanol dehydrogenase 39.8 1.4E+02 0.003 29.3 8.2 82 89-173 33-120 (395)
118 COG0743 Dxr 1-deoxy-D-xylulose 39.6 68 0.0015 31.7 5.7 19 148-166 78-96 (385)
119 COG1066 Sms Predicted ATP-depe 39.3 1.1E+02 0.0023 31.0 7.1 84 84-175 95-184 (456)
120 PRK10124 putative UDP-glucose 38.9 1.9E+02 0.004 29.1 9.0 111 80-194 143-267 (463)
121 TIGR02638 lactal_redase lactal 38.9 1.5E+02 0.0033 28.7 8.2 82 89-173 13-100 (379)
122 PRK05749 3-deoxy-D-manno-octul 38.8 72 0.0016 30.9 5.9 81 81-168 50-133 (425)
123 PRK14561 hypothetical protein; 38.7 82 0.0018 27.7 5.8 53 81-137 1-57 (194)
124 PRK15204 undecaprenyl-phosphat 38.6 1.5E+02 0.0033 29.9 8.3 37 80-118 146-183 (476)
125 PLN02819 lysine-ketoglutarate 38.0 1.3E+02 0.0028 33.7 8.3 79 78-167 567-656 (1042)
126 PRK06395 phosphoribosylamine-- 37.9 1.4E+02 0.0031 29.6 8.0 70 80-165 2-71 (435)
127 cd08189 Fe-ADH5 Iron-containin 37.8 1.6E+02 0.0034 28.5 8.1 82 89-173 10-97 (374)
128 TIGR01861 ANFD nitrogenase iro 37.6 3.1E+02 0.0066 28.2 10.4 105 79-197 327-435 (513)
129 PRK10206 putative oxidoreducta 37.6 81 0.0018 30.1 6.0 70 81-167 2-72 (344)
130 PRK08057 cobalt-precorrin-6x r 37.5 2.1E+02 0.0045 26.4 8.5 91 80-188 2-99 (248)
131 COG2179 Predicted hydrolase of 37.4 1.1E+02 0.0023 27.1 6.0 67 92-167 49-117 (175)
132 PRK09860 putative alcohol dehy 37.0 1.4E+02 0.003 29.1 7.6 81 89-172 15-101 (383)
133 PRK13600 putative ribosomal pr 36.9 75 0.0016 24.6 4.6 42 95-138 19-63 (84)
134 TIGR00514 accC acetyl-CoA carb 36.7 1.2E+02 0.0025 30.1 7.1 78 80-165 2-80 (449)
135 PF11039 DUF2824: Protein of u 36.6 25 0.00053 29.9 1.9 54 183-237 61-114 (151)
136 cd08185 Fe-ADH1 Iron-containin 36.5 1.2E+02 0.0027 29.3 7.1 78 93-173 13-97 (380)
137 PRK09288 purT phosphoribosylgl 36.4 2.9E+02 0.0062 26.4 9.7 71 80-166 12-82 (395)
138 TIGR00236 wecB UDP-N-acetylglu 36.3 2E+02 0.0044 27.0 8.5 109 82-191 2-120 (365)
139 PF13727 CoA_binding_3: CoA-bi 36.0 95 0.0021 25.4 5.5 63 90-166 85-148 (175)
140 PF02571 CbiJ: Precorrin-6x re 36.0 2.1E+02 0.0045 26.4 8.2 83 82-180 2-89 (249)
141 PF02844 GARS_N: Phosphoribosy 36.0 54 0.0012 26.3 3.7 19 148-166 51-69 (100)
142 PRK13789 phosphoribosylamine-- 35.8 76 0.0017 31.5 5.6 22 80-103 4-25 (426)
143 cd03466 Nitrogenase_NifN_2 Nit 35.7 1.8E+02 0.0038 28.8 8.2 85 79-174 299-387 (429)
144 PRK13602 putative ribosomal pr 35.6 83 0.0018 24.0 4.6 41 95-137 17-60 (82)
145 cd08186 Fe-ADH8 Iron-containin 35.5 1.2E+02 0.0026 29.4 6.9 63 110-172 28-97 (383)
146 cd07364 PCA_45_Dioxygenase_B S 35.4 61 0.0013 30.4 4.6 78 149-232 38-127 (277)
147 TIGR03693 ocin_ThiF_like putat 35.2 1.5E+02 0.0033 31.3 7.8 76 79-168 128-213 (637)
148 COG0421 SpeE Spermidine syntha 35.1 85 0.0018 29.7 5.5 91 80-180 77-176 (282)
149 PF09967 DUF2201: VWA-like dom 34.6 35 0.00077 28.0 2.6 47 87-136 62-108 (126)
150 PRK10126 tyrosine phosphatase; 34.6 1.3E+02 0.0028 25.1 6.1 76 80-168 2-84 (147)
151 TIGR00237 xseA exodeoxyribonuc 34.4 3.3E+02 0.0071 27.2 9.9 100 77-178 126-236 (432)
152 PRK07634 pyrroline-5-carboxyla 34.3 1.9E+02 0.0041 25.6 7.5 50 80-132 4-55 (245)
153 PF08660 Alg14: Oligosaccharid 34.2 1.5E+02 0.0032 25.7 6.6 27 152-178 85-111 (170)
154 COG0120 RpiA Ribose 5-phosphat 33.6 67 0.0014 29.6 4.4 50 85-138 23-74 (227)
155 TIGR03013 EpsB_2 sugar transfe 33.4 1.6E+02 0.0035 29.1 7.5 70 80-167 124-194 (442)
156 COG1606 ATP-utilizing enzymes 33.2 1.8E+02 0.0038 27.5 7.1 83 80-165 17-119 (269)
157 TIGR01142 purT phosphoribosylg 32.9 2.5E+02 0.0055 26.7 8.6 68 82-165 1-68 (380)
158 PRK08462 biotin carboxylase; V 32.4 2E+02 0.0043 28.3 8.0 81 80-169 4-85 (445)
159 COG1927 Mtd Coenzyme F420-depe 32.4 2.7E+02 0.0059 25.7 8.0 103 53-166 7-116 (277)
160 cd08179 NADPH_BDH NADPH-depend 32.4 76 0.0016 30.7 4.9 52 122-173 44-95 (375)
161 KOG1610 Corticosteroid 11-beta 32.3 1.3E+02 0.0028 29.2 6.2 60 176-235 152-217 (322)
162 PF10087 DUF2325: Uncharacteri 32.1 85 0.0018 24.2 4.3 44 107-157 48-95 (97)
163 cd01713 PAPS_reductase This do 32.1 2.7E+02 0.0059 22.4 9.2 57 82-138 1-63 (173)
164 COG4569 MhpF Acetaldehyde dehy 32.0 1.1E+02 0.0025 28.1 5.5 53 79-134 3-56 (310)
165 cd08184 Fe-ADH3 Iron-containin 31.9 1.8E+02 0.0039 28.1 7.3 64 109-172 26-94 (347)
166 PRK08334 translation initiatio 31.5 1.9E+02 0.0041 28.4 7.4 70 89-172 176-250 (356)
167 PRK12767 carbamoyl phosphate s 31.4 1.8E+02 0.004 26.9 7.2 76 80-166 1-76 (326)
168 cd08181 PPD-like 1,3-propanedi 31.3 82 0.0018 30.3 4.9 64 110-173 27-97 (357)
169 cd01977 Nitrogenase_VFe_alpha 31.3 1.8E+02 0.0038 28.7 7.3 105 79-198 287-396 (415)
170 PRK05253 sulfate adenylyltrans 31.2 2.9E+02 0.0063 26.3 8.5 84 81-165 28-133 (301)
171 PRK05586 biotin carboxylase; V 31.1 1.6E+02 0.0035 29.1 7.1 77 80-164 2-79 (447)
172 cd01995 ExsB ExsB is a transcr 30.8 2.6E+02 0.0056 23.3 7.5 77 82-166 1-83 (169)
173 PRK06683 hypothetical protein; 30.7 1.1E+02 0.0023 23.5 4.5 39 97-137 19-60 (82)
174 PRK13366 protocatechuate 4,5-d 30.6 78 0.0017 29.9 4.5 79 149-233 38-128 (284)
175 COG2117 Predicted subunit of t 30.5 36 0.00078 30.1 2.0 52 82-137 2-58 (198)
176 cd01990 Alpha_ANH_like_I This 30.4 1.4E+02 0.003 25.8 5.9 54 83-138 1-60 (202)
177 COG3453 Uncharacterized protei 29.9 1.7E+02 0.0036 24.6 5.7 49 110-158 29-86 (130)
178 cd01976 Nitrogenase_MoFe_alpha 29.9 2.7E+02 0.0058 27.6 8.4 47 148-198 358-408 (421)
179 cd03808 GT1_cap1E_like This fa 29.8 3.8E+02 0.0083 23.5 10.6 82 82-168 1-89 (359)
180 PF13580 SIS_2: SIS domain; PD 29.7 41 0.0009 27.7 2.2 30 107-136 103-136 (138)
181 KOG0781 Signal recognition par 29.6 2.5E+02 0.0054 29.1 8.0 82 91-178 392-514 (587)
182 PRK00994 F420-dependent methyl 29.6 54 0.0012 30.6 3.1 65 124-189 25-95 (277)
183 KOG2741 Dimeric dihydrodiol de 28.9 1.9E+02 0.0041 28.4 6.8 75 78-166 4-79 (351)
184 TIGR02689 ars_reduc_gluta arse 28.9 80 0.0017 25.6 3.8 38 119-167 42-79 (126)
185 cd01988 Na_H_Antiporter_C The 28.8 2.7E+02 0.0058 21.4 8.5 42 123-168 62-103 (132)
186 PRK01372 ddl D-alanine--D-alan 28.8 1E+02 0.0022 28.3 5.0 53 78-135 2-61 (304)
187 PRK13820 argininosuccinate syn 28.8 1.8E+02 0.004 28.8 6.9 87 80-170 2-120 (394)
188 cd08562 GDPD_EcUgpQ_like Glyce 28.8 1.5E+02 0.0032 26.0 5.9 37 121-165 190-226 (229)
189 PF01008 IF-2B: Initiation fac 28.5 1.6E+02 0.0034 27.1 6.2 72 84-168 110-185 (282)
190 PRK02842 light-independent pro 28.3 2.8E+02 0.0061 27.4 8.3 106 79-199 289-399 (427)
191 cd05015 SIS_PGI_1 Phosphogluco 28.0 96 0.0021 26.2 4.3 57 80-138 73-138 (158)
192 TIGR02855 spore_yabG sporulati 27.7 96 0.0021 29.5 4.4 110 123-245 121-249 (283)
193 TIGR01279 DPOR_bchN light-inde 27.6 2.6E+02 0.0056 27.5 7.8 105 79-199 273-382 (407)
194 PF00205 TPP_enzyme_M: Thiamin 27.5 1.3E+02 0.0029 24.2 4.9 45 122-168 31-86 (137)
195 PF02441 Flavoprotein: Flavopr 27.4 84 0.0018 25.5 3.7 35 81-117 1-37 (129)
196 CHL00073 chlN photochlorophyll 27.2 3.7E+02 0.008 27.3 8.9 77 79-166 313-398 (457)
197 TIGR00524 eIF-2B_rel eIF-2B al 27.2 3.2E+02 0.007 26.0 8.1 64 91-167 137-205 (303)
198 PRK05802 hypothetical protein; 27.2 2.3E+02 0.005 27.0 7.2 88 81-172 173-266 (320)
199 cd01965 Nitrogenase_MoFe_beta_ 27.1 5.4E+02 0.012 25.3 10.0 85 78-173 297-385 (428)
200 TIGR00853 pts-lac PTS system, 27.1 2.4E+02 0.0051 22.0 6.1 20 122-141 67-86 (95)
201 PF10686 DUF2493: Protein of u 27.0 2E+02 0.0044 21.3 5.4 16 122-137 49-64 (71)
202 PLN03028 pyrophosphate--fructo 26.9 2.4E+02 0.0053 29.7 7.7 87 80-167 79-181 (610)
203 PRK06552 keto-hydroxyglutarate 26.9 2.5E+02 0.0054 25.3 6.9 82 85-181 69-150 (213)
204 cd00115 LMWPc Substituted upda 26.7 1.3E+02 0.0029 24.5 4.8 37 121-168 49-85 (141)
205 PRK08335 translation initiatio 26.6 4.7E+02 0.01 24.6 8.9 73 85-172 113-189 (275)
206 TIGR00715 precor6x_red precorr 26.6 3.3E+02 0.0072 25.2 7.9 84 82-180 2-88 (256)
207 TIGR01282 nifD nitrogenase mol 26.4 3.3E+02 0.0072 27.4 8.5 47 148-198 393-443 (466)
208 PRK05720 mtnA methylthioribose 26.3 2.4E+02 0.0051 27.5 7.1 69 90-172 164-237 (344)
209 cd01075 NAD_bind_Leu_Phe_Val_D 26.0 4.1E+02 0.0089 23.3 8.1 156 80-274 28-184 (200)
210 smart00857 Resolvase Resolvase 26.0 1.6E+02 0.0034 23.8 5.1 51 149-228 55-105 (148)
211 PLN02384 ribose-5-phosphate is 26.0 1.6E+02 0.0034 27.8 5.6 50 85-138 52-105 (264)
212 PRK14072 6-phosphofructokinase 26.0 3.2E+02 0.007 27.2 8.1 20 148-167 92-111 (416)
213 PRK07114 keto-hydroxyglutarate 25.8 4.4E+02 0.0095 24.0 8.4 81 86-181 73-153 (222)
214 PRK11391 etp phosphotyrosine-p 25.7 2E+02 0.0043 24.0 5.8 75 81-168 3-84 (144)
215 PRK04457 spermidine synthase; 25.6 5.3E+02 0.011 23.7 12.1 168 80-273 67-253 (262)
216 PF04122 CW_binding_2: Putativ 25.5 2.4E+02 0.0051 21.3 5.7 50 122-178 42-91 (92)
217 PRK05784 phosphoribosylamine-- 25.3 3E+02 0.0065 28.0 7.9 18 148-165 58-75 (486)
218 COG0107 HisF Imidazoleglycerol 25.1 42 0.0009 31.2 1.6 55 80-134 197-254 (256)
219 COG4752 Uncharacterized protei 25.1 1.4E+02 0.0029 26.1 4.5 58 125-182 98-156 (190)
220 cd08192 Fe-ADH7 Iron-containin 25.1 3.6E+02 0.0079 25.9 8.2 78 93-172 11-94 (370)
221 PRK13936 phosphoheptose isomer 25.1 1.8E+02 0.004 25.4 5.7 32 107-138 111-146 (197)
222 PRK08591 acetyl-CoA carboxylas 25.0 3.3E+02 0.0071 26.7 8.0 76 80-165 2-80 (451)
223 TIGR03568 NeuC_NnaA UDP-N-acet 25.0 6E+02 0.013 24.4 9.7 112 81-193 1-129 (365)
224 PRK11106 queuosine biosynthesi 24.8 2.4E+02 0.0053 25.7 6.6 55 81-138 2-63 (231)
225 cd01715 ETF_alpha The electron 24.7 3.5E+02 0.0077 22.7 7.3 73 108-180 29-106 (168)
226 PF05368 NmrA: NmrA-like famil 24.7 3.5E+02 0.0075 23.5 7.5 70 87-168 3-73 (233)
227 cd08194 Fe-ADH6 Iron-containin 24.5 2.9E+02 0.0064 26.6 7.4 80 92-173 9-94 (375)
228 TIGR03759 conj_TIGR03759 integ 24.4 1.8E+02 0.0039 26.3 5.4 58 80-137 109-166 (200)
229 PTZ00433 tyrosine aminotransfe 24.4 5.2E+02 0.011 24.9 9.2 86 84-174 107-196 (412)
230 cd06198 FNR_like_3 NAD(P) bind 24.4 4E+02 0.0086 23.0 7.7 58 80-137 95-159 (216)
231 PRK04527 argininosuccinate syn 24.3 2.2E+02 0.0047 28.4 6.5 54 80-138 2-64 (400)
232 KOG1905 Class IV sirtuins (SIR 24.3 32 0.00069 33.1 0.7 40 190-234 70-109 (353)
233 PLN00200 argininosuccinate syn 24.2 2.8E+02 0.006 27.7 7.2 56 80-137 5-66 (404)
234 PRK06202 hypothetical protein; 24.2 4.7E+02 0.01 23.0 8.2 82 79-175 60-145 (232)
235 PLN02251 pyrophosphate-depende 24.2 2.4E+02 0.0053 29.4 7.0 88 79-167 95-198 (568)
236 TIGR03499 FlhF flagellar biosy 24.1 5.4E+02 0.012 23.8 8.9 74 81-166 194-279 (282)
237 PF04592 SelP_N: Selenoprotein 23.9 3E+02 0.0066 25.5 6.9 81 82-171 27-122 (238)
238 cd07950 Gallate_Doxase_N The N 23.8 1.3E+02 0.0028 28.2 4.6 42 149-191 38-79 (277)
239 PRK07178 pyruvate carboxylase 23.7 4E+02 0.0086 26.6 8.4 79 81-169 3-82 (472)
240 COG0345 ProC Pyrroline-5-carbo 23.5 2.9E+02 0.0062 25.9 6.9 50 81-133 2-52 (266)
241 PF06508 QueC: Queuosine biosy 23.5 2E+02 0.0044 25.6 5.7 53 82-137 1-60 (209)
242 TIGR00486 YbgI_SA1388 dinuclea 23.4 2E+02 0.0043 26.3 5.8 54 78-139 165-218 (249)
243 PRK06111 acetyl-CoA carboxylas 23.3 4.3E+02 0.0092 25.8 8.4 78 80-165 2-80 (450)
244 PRK13601 putative L7Ae-like ri 23.2 1.7E+02 0.0037 22.4 4.4 46 86-137 9-57 (82)
245 PRK02910 light-independent pro 23.2 2.4E+02 0.0052 28.8 6.8 80 80-171 293-374 (519)
246 PRK01018 50S ribosomal protein 23.1 1.6E+02 0.0034 23.2 4.4 38 97-136 24-64 (99)
247 PF09419 PGP_phosphatase: Mito 23.1 1.8E+02 0.0038 25.4 5.1 77 92-174 62-149 (168)
248 COG1167 ARO8 Transcriptional r 23.0 4.1E+02 0.0088 26.5 8.3 76 85-167 159-234 (459)
249 COG1748 LYS9 Saccharopine dehy 23.0 2.8E+02 0.006 27.6 6.9 83 80-178 1-86 (389)
250 PF04273 DUF442: Putative phos 23.0 3.3E+02 0.0071 21.9 6.3 30 110-139 28-66 (110)
251 PF01993 MTD: methylene-5,6,7, 23.0 1.7E+02 0.0037 27.5 5.0 101 53-166 6-115 (276)
252 PF09314 DUF1972: Domain of un 22.9 2.6E+02 0.0056 24.8 6.1 86 80-169 1-102 (185)
253 cd08187 BDH Butanol dehydrogen 22.9 2.9E+02 0.0063 26.8 7.1 62 111-172 31-99 (382)
254 PRK11175 universal stress prot 22.9 1.7E+02 0.0038 26.6 5.3 63 123-189 229-300 (305)
255 COG0108 RibB 3,4-dihydroxy-2-b 22.9 3.6E+02 0.0078 24.5 7.0 46 91-136 141-191 (203)
256 COG0528 PyrH Uridylate kinase 22.9 2.5E+02 0.0054 26.1 6.1 15 123-137 202-216 (238)
257 COG1778 Low specificity phosph 22.8 1.1E+02 0.0024 26.9 3.6 59 90-161 40-98 (170)
258 PRK12833 acetyl-CoA carboxylas 22.8 4.8E+02 0.01 26.0 8.8 81 80-169 5-86 (467)
259 TIGR01921 DAP-DH diaminopimela 22.7 3.2E+02 0.0068 26.5 7.1 36 80-118 3-38 (324)
260 COG1736 DPH2 Diphthamide synth 22.7 1.7E+02 0.0036 28.7 5.3 67 109-185 239-313 (347)
261 PRK05772 translation initiatio 22.7 2.8E+02 0.0062 27.2 6.9 66 89-167 184-254 (363)
262 PF05582 Peptidase_U57: YabG p 22.6 1.1E+02 0.0024 29.2 3.8 47 123-173 122-168 (287)
263 cd02004 TPP_BZL_OCoD_HPCL Thia 22.4 2.9E+02 0.0063 23.2 6.3 15 123-137 132-146 (172)
264 TIGR02667 moaB_proteo molybden 22.4 1.7E+02 0.0038 25.0 4.9 42 122-168 27-72 (163)
265 PF02142 MGS: MGS-like domain 22.2 91 0.002 23.9 2.8 47 122-168 22-69 (95)
266 COG1419 FlhF Flagellar GTP-bin 22.2 6.1E+02 0.013 25.4 9.1 79 80-170 202-292 (407)
267 PF01248 Ribosomal_L7Ae: Ribos 22.1 1.7E+02 0.0037 22.1 4.4 42 94-137 20-65 (95)
268 PRK08463 acetyl-CoA carboxylas 22.1 5.7E+02 0.012 25.6 9.2 80 80-169 2-82 (478)
269 PRK00025 lpxB lipid-A-disaccha 21.9 71 0.0015 30.1 2.6 20 150-169 76-95 (380)
270 PRK14097 pgi glucose-6-phospha 21.8 2.1E+02 0.0045 28.9 5.9 59 80-138 135-202 (448)
271 TIGR01470 cysG_Nterm siroheme 21.8 4.9E+02 0.011 23.0 7.8 49 81-134 10-58 (205)
272 TIGR02128 G6PI_arch bifunction 21.7 2.2E+02 0.0047 27.1 5.8 55 80-139 66-122 (308)
273 cd01974 Nitrogenase_MoFe_beta 21.7 4.5E+02 0.0098 26.0 8.3 86 79-175 302-393 (435)
274 cd05565 PTS_IIB_lactose PTS_II 21.5 1.9E+02 0.0041 22.9 4.6 20 122-141 64-83 (99)
275 COG2403 Predicted GTPase [Gene 21.3 2.2E+02 0.0048 28.5 5.7 85 79-177 5-99 (449)
276 COG0075 Serine-pyruvate aminot 21.3 4.5E+02 0.0098 26.1 8.0 78 84-166 58-138 (383)
277 KOG0780 Signal recognition par 21.1 8.8E+02 0.019 24.6 13.5 147 122-278 148-331 (483)
278 COG1992 Uncharacterized conser 21.1 3.1E+02 0.0066 24.5 6.1 72 92-167 74-151 (181)
279 TIGR02477 PFKA_PPi diphosphate 21.0 2.5E+02 0.0053 29.2 6.3 88 79-167 66-169 (539)
280 cd08191 HHD 6-hydroxyhexanoate 20.9 4.9E+02 0.011 25.2 8.2 80 89-172 7-92 (386)
281 PRK13372 pcmA protocatechuate 20.8 1.3E+02 0.0028 30.5 4.1 81 150-231 186-273 (444)
282 COG2247 LytB Putative cell wal 20.7 2.4E+02 0.0052 27.4 5.8 66 110-181 30-97 (337)
283 TIGR00789 flhB_rel flhB C-term 20.7 1.4E+02 0.0029 23.0 3.4 38 122-179 32-69 (82)
284 PRK08535 translation initiatio 20.5 5.8E+02 0.013 24.2 8.5 68 85-166 124-195 (310)
285 TIGR00511 ribulose_e2b2 ribose 20.4 6.5E+02 0.014 23.8 8.7 73 85-172 119-195 (301)
286 cd00568 TPP_enzymes Thiamine p 20.4 3.2E+02 0.007 22.3 6.1 35 81-118 64-101 (168)
287 PRK13978 ribose-5-phosphate is 20.3 1.6E+02 0.0035 27.0 4.4 49 85-138 24-76 (228)
288 PRK00865 glutamate racemase; P 20.3 1.2E+02 0.0025 28.0 3.5 96 80-194 5-104 (261)
289 TIGR03217 4OH_2_O_val_ald 4-hy 20.1 4.5E+02 0.0097 25.3 7.6 136 79-226 75-226 (333)
290 PRK10799 metal-binding protein 20.1 2.4E+02 0.0051 25.8 5.5 53 79-139 164-216 (247)
291 COG1927 Mtd Coenzyme F420-depe 20.1 1.1E+02 0.0024 28.1 3.2 39 149-187 50-93 (277)
292 PRK08674 bifunctional phosphog 20.0 2E+02 0.0042 27.4 5.1 55 79-138 77-133 (337)
No 1
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=100.00 E-value=1.7e-54 Score=387.46 Aligned_cols=207 Identities=81% Similarity=1.340 Sum_probs=199.5
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCc
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVD 161 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~D 161 (294)
||+||+||+||||++|+++++.+.++++|++||||+++++++++|+++|||++.+++.++.+++.+++++++.|+++++|
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 80 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVD 80 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCC
Confidence 79999999999999999999999999999999999999999999999999999988766666777888999999999999
Q ss_pred EEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEEEEeC
Q 022631 162 FILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPV 241 (294)
Q Consensus 162 liV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~~~~I 241 (294)
++|++|||+|||+++++.+++++||+||||||+|||+++||+|++|+++.+|+++||+|+|+|++++|+||||+|+.++|
T Consensus 81 liv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tvh~v~~~~D~G~Ii~Q~~~~I 160 (207)
T PLN02331 81 FVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRVVPV 160 (207)
T ss_pred EEEEeCcchhCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHHHHHcCCCeEEEEEEEECCCCCCCCeEEEEEEec
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCeeeecCCC
Q 022631 242 LWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVIRSKE 288 (294)
Q Consensus 242 ~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~~~~~~~~~ 288 (294)
.++||+++|++|+..+|+++|+++|+.+.+|++.+++.++.++++||
T Consensus 161 ~~~dt~~~L~~r~~~~e~~ll~~al~~l~~~~~~~~~~~~~~~~~~~ 207 (207)
T PLN02331 161 LATDTPEELAARVLHEEHQLYVEVVAALCEERIVWREDGVPLIRSKE 207 (207)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeCCCeeEEecCCC
Confidence 99999999999999999999999999999999999999999999986
No 2
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.7e-54 Score=375.60 Aligned_cols=196 Identities=40% Similarity=0.611 Sum_probs=187.8
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCC
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNV 160 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~ 160 (294)
+||+||+||+||||++|++++..+.++++|++|++|+++++++++|+++|||.+.++++.+..|+.+|+++.+.|++.++
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~ 80 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGP 80 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999998888999999999999999999999999999999998888888899999999999999
Q ss_pred cEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEEEEe
Q 022631 161 DFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVP 240 (294)
Q Consensus 161 DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~~~~ 240 (294)
|++|+||||+||+++|++.|++++||+||||||.|+|. .++.+|+.+|++++||||||||+++|+||||.|..+|
T Consensus 81 dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~-----h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q~~Vp 155 (200)
T COG0299 81 DLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGL-----HAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQAAVP 155 (200)
T ss_pred CEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCc-----hHHHHHHHcCCCccCcEEEEEccCCCCCCeEEEEeee
Confidence 99999999999999999999999999999999999995 5888999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCe
Q 022631 241 VLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGV 281 (294)
Q Consensus 241 I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~~ 281 (294)
|.++||.++|.+|+...|+++|+++++.+++|++.+..+++
T Consensus 156 v~~~Dt~etl~~RV~~~Eh~lyp~~v~~~~~g~~~~~~~~~ 196 (200)
T COG0299 156 VLPGDTAETLEARVLEQEHRLYPLAVKLLAEGRLKIEGGRV 196 (200)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCceE
Confidence 99999999999999999999999999999999998854444
No 3
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=100.00 E-value=2.5e-49 Score=368.64 Aligned_cols=209 Identities=25% Similarity=0.374 Sum_probs=190.9
Q ss_pred cCCCCcceeeecCCCCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCC
Q 022631 64 KNNGDKYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEP 143 (294)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~ 143 (294)
....+.++++++...+++||+||+||+||||++|+++++.|.++++|++||||++++. .+|+++|||++.++..+ ..
T Consensus 68 ~~~~~~l~i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~--~~A~~~gIp~~~~~~~~-~~ 144 (280)
T TIGR00655 68 LAEKFEMTWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLR--SLVERFGIPFHYIPATK-DN 144 (280)
T ss_pred HHHHhCCEEEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChhHH--HHHHHhCCCEEEcCCCC-cc
Confidence 3344568999999989999999999999999999999999999999999999998875 47999999999988643 33
Q ss_pred CCCChhHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEE
Q 022631 144 NGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHF 223 (294)
Q Consensus 144 ~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~ 223 (294)
+..+++++++.|+++++|++|++|||+|||+++++.|++++||+||||||+|||++ |.+| |+.+|++++|+|+|+
T Consensus 145 ~~~~e~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iINiHpSLLP~f~G~~----p~~~-ai~~G~k~tG~TvH~ 219 (280)
T TIGR00655 145 RVEHEKRQLELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGAN----PYQR-AYERGVKIIGATAHY 219 (280)
T ss_pred hhhhHHHHHHHHHHhCCCEEEEeCchhhCCHHHHhhccCCEEEecCCcCCCCCCcC----HHHH-HHHcCCCeEEEEEEE
Confidence 44567889999999999999999999999999999999999999999999999987 6665 699999999999999
Q ss_pred ecCCCCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCC
Q 022631 224 VDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDG 280 (294)
Q Consensus 224 v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~ 280 (294)
|++++|+||||.|+.++|.++||+++|.+|+.++|+++|+++++.++++++.+..+.
T Consensus 220 V~e~lD~GpII~Q~~v~I~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~~~~~~~~~~ 276 (280)
T TIGR00655 220 VTEELDEGPIIEQDVVRVDHTDNVEDLIRAGRDIEKVVLARAVKLHLEDRVFVYENK 276 (280)
T ss_pred EcCCCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcCCe
Confidence 999999999999999999999999999999999999999999999999998775443
No 4
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=5.4e-49 Score=367.83 Aligned_cols=207 Identities=24% Similarity=0.353 Sum_probs=190.4
Q ss_pred CCcceeeecCCCCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCC
Q 022631 67 GDKYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGL 146 (294)
Q Consensus 67 ~~~~~~~~~~~~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~ 146 (294)
...++++++...+++|||||+||+||||++|+++++.|.++++|++|+||++++ .++|+++|||++.++.+. ..++.
T Consensus 80 ~l~l~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~~~--~~~A~~~gIp~~~~~~~~-~~~~~ 156 (289)
T PRK13010 80 KFDMQWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDL--QPLAVQHDIPFHHLPVTP-DTKAQ 156 (289)
T ss_pred HhCCeEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECChhH--HHHHHHcCCCEEEeCCCc-ccccc
Confidence 445889999988899999999999999999999999999999999999999876 599999999999987654 33445
Q ss_pred ChhHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecC
Q 022631 147 SPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDE 226 (294)
Q Consensus 147 ~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~ 226 (294)
++.+++++|+++++|++|++|||+||+++|++.|++++||+||||||+|||++ |.+| ||.+|+++||+|+|+|++
T Consensus 157 ~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiNiHpSlLP~f~G~~----~~~~-ai~~G~k~tG~TvH~v~~ 231 (289)
T PRK13010 157 QEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGAR----PYHQ-AHARGVKLIGATAHFVTD 231 (289)
T ss_pred hHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCceeeCcccCCCCCCCC----HHHH-HHHcCCCeEEEEEEEEcC
Confidence 67789999999999999999999999999999999999999999999999987 6555 699999999999999999
Q ss_pred CCCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCe
Q 022631 227 HYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGV 281 (294)
Q Consensus 227 ~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~~ 281 (294)
++|+||||+|+.++|.++||.++|.+|+..+|+++|+++|+.+++|++.+..+.+
T Consensus 232 ~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~~~~~~~~~~~~ 286 (289)
T PRK13010 232 DLDEGPIIEQDVERVDHSYSPEDLVAKGRDVECLTLARAVKAFIEHRVFINGDRT 286 (289)
T ss_pred CCCCCCceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999987765443
No 5
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=9.2e-49 Score=366.03 Aligned_cols=205 Identities=25% Similarity=0.393 Sum_probs=187.3
Q ss_pred cceeeecCCCCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCCh
Q 022631 69 KYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSP 148 (294)
Q Consensus 69 ~~~~~~~~~~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d 148 (294)
..+.+++...+++||+||+||+||||++|++++..|.++++|++|+||++++. .+|+++|||++.++.+. ..++.++
T Consensus 78 ~l~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~~~~--~lA~~~gIp~~~~~~~~-~~~~~~~ 154 (286)
T PRK06027 78 EMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLR--SLVERFGIPFHHVPVTK-ETKAEAE 154 (286)
T ss_pred CCEEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcChhHH--HHHHHhCCCEEEeccCc-cccchhH
Confidence 36888899989999999999999999999999999999999999999998764 56999999999887643 2344567
Q ss_pred hHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCC
Q 022631 149 NDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHY 228 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~ 228 (294)
.++.+.|+++++|++|++|||+|||++|++.|++++||+||||||+|||++ |.+| ||.+|+++||+|+|+|++++
T Consensus 155 ~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~yrG~~----~~~~-ai~~G~~~tG~TiH~v~~~~ 229 (286)
T PRK06027 155 ARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAK----PYHQ-AYERGVKLIGATAHYVTADL 229 (286)
T ss_pred HHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceecCcccCCCCCCCC----HHHH-HHHCCCCeEEEEEEEEcCCC
Confidence 788999999999999999999999999999999999999999999999987 6665 69999999999999999999
Q ss_pred CCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCe
Q 022631 229 DTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGV 281 (294)
Q Consensus 229 D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~~ 281 (294)
|+||||+|+.++|.++||.++|.+|+..+|+++|+++++.++++++.+....+
T Consensus 230 D~G~Ii~Q~~v~i~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~~~~~~~~~~~ 282 (286)
T PRK06027 230 DEGPIIEQDVIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLEDRVLVYGNKT 282 (286)
T ss_pred cCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEcCCEE
Confidence 99999999999999999999999999999999999999999999987754443
No 6
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-49 Score=341.13 Aligned_cols=199 Identities=39% Similarity=0.640 Sum_probs=191.4
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCC--CceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHH
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSV--YGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALS 156 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~--~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~ 156 (294)
+++|++||+||+||||++|+++++.|.+ +++|+.|+||+.++.++++|+++|||+.+++++.+..|...|.++.+.|.
T Consensus 5 ~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~~l~ 84 (206)
T KOG3076|consen 5 RRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNKKGVYGLERAADAGIPTLVIPHKRFASREKYDNELAEVLL 84 (206)
T ss_pred cceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEeccccchhhhHHHHCCCCEEEeccccccccccCcHHHHHHHH
Confidence 5899999999999999999999999988 89999999999999999999999999999999888888888999999999
Q ss_pred hcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEE
Q 022631 157 EVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQ 236 (294)
Q Consensus 157 ~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q 236 (294)
++++|++|+||||+||+.+|++.|+.++|||||||||.|.|.+ ++.+|+..|.+.+|||+|||+|++|+|+||.|
T Consensus 85 e~~~d~v~lAG~M~iLs~~fl~~~~~~iiNIHPaLlpaFkG~~-----a~k~Aleagv~~~GctvHfV~EevD~G~iI~q 159 (206)
T KOG3076|consen 85 ELGTDLVCLAGYMRILSGEFLSQLPKRIINIHPALLPAFKGLH-----AIKQALEAGVKLSGCTVHFVIEEVDTGPIIAQ 159 (206)
T ss_pred HhCCCEEEehhhHHHcCHHHHhhcccceEecccccccccCCch-----HHHHHHHhccccccceEEEehhhccCCCceEE
Confidence 9999999999999999999999999999999999999999975 67788999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCee
Q 022631 237 RVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVP 282 (294)
Q Consensus 237 ~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~~~ 282 (294)
+.++|.++||.++|.+|+..+|+++|++++.+++++++.+.++|..
T Consensus 160 ~~v~V~~~Dt~esl~qrv~~aEH~~~~~Ai~~v~~~~~~~~~~~~~ 205 (206)
T KOG3076|consen 160 MAVPVIPGDTLESLEQRVHDAEHKAFVEAIKAVCEGRVLPYETGRT 205 (206)
T ss_pred EeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcceeCCCCCc
Confidence 9999999999999999999999999999999999999999998864
No 7
>PLN02828 formyltetrahydrofolate deformylase
Probab=100.00 E-value=4.7e-48 Score=357.22 Aligned_cols=204 Identities=23% Similarity=0.380 Sum_probs=185.4
Q ss_pred CCCCcc---eeeecCCCCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCC---CCccHHHHHhCCCCEEEcCC
Q 022631 65 NNGDKY---EKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKP---DCGGAEYARDNSIPVILFPK 138 (294)
Q Consensus 65 ~~~~~~---~~~~~~~~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~---~~~~~~~A~~~gIP~~~~~~ 138 (294)
...+.| +|+++...+++||+||+||+||||++|+++++.|.++++|++||||++ +++++++|+++|||++.++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~riavlvSg~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 52 SKHFKALKSVVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred HHhcCCcceEEEEccCCCCcEEEEEEcCCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 345567 889999999999999999999999999999999999999999999984 45788999999999998876
Q ss_pred CCCCCCCCChhHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEE
Q 022631 139 TKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSG 218 (294)
Q Consensus 139 ~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tG 218 (294)
+.+.. .++++++.++ ++|++|++|||+|||++|++.|++++||+||||||+|||++ |.+| |+.+|++.+|
T Consensus 132 ~~~~~---~e~~~~~~l~--~~DliVLAgym~IL~~~~l~~~~~riINIHpSlLP~f~Ga~----p~~~-Ai~~Gvk~tG 201 (268)
T PLN02828 132 TKENK---REDEILELVK--GTDFLVLARYMQILSGNFLKGYGKDIINIHHGLLPSFKGGN----PSKQ-AFDAGVKLIG 201 (268)
T ss_pred CCCCC---HHHHHHHHHh--cCCEEEEeeehHhCCHHHHhhccCCEEEecCccCCCCCCCc----HHHH-HHHcCCCeEE
Confidence 54322 2457778787 69999999999999999999999999999999999999987 6666 5999999999
Q ss_pred EEEEEecCCCCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec
Q 022631 219 PTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWRE 278 (294)
Q Consensus 219 vTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~ 278 (294)
+|+|+|++++|+||||.|+.++|.++||+++|..|+.+.|+++|+++++.++++++....
T Consensus 202 ~TvH~V~~~lD~GpII~Q~~v~V~~~dt~~~L~~r~~~~E~~~l~~av~~~~~~~~~~~~ 261 (268)
T PLN02828 202 ATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQCLAKAIKSYCELRVLPYG 261 (268)
T ss_pred EEEEEEcCCCCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC
Confidence 999999999999999999999999999999999999999999999999999999987654
No 8
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=4.9e-48 Score=361.07 Aligned_cols=205 Identities=25% Similarity=0.354 Sum_probs=185.5
Q ss_pred cceeeecCCCCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCCh
Q 022631 69 KYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSP 148 (294)
Q Consensus 69 ~~~~~~~~~~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d 148 (294)
..++.++...+++||+||+||+|+||++|+++++.|.++++|++|+||++++. .+|+++|||++.++... ..++.++
T Consensus 78 ~l~i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~--~lA~~~gIp~~~~~~~~-~~~~~~~ 154 (286)
T PRK13011 78 GMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLE--PLAAWHGIPFHHFPITP-DTKPQQE 154 (286)
T ss_pred CcEEEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHH--HHHHHhCCCEEEeCCCc-CchhhhH
Confidence 36788888888999999999999999999999999999999999999988754 56999999999887533 2333456
Q ss_pred hHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCC
Q 022631 149 NDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHY 228 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~ 228 (294)
.++.++|+++++|++|++|||+|||+++++.|++++||+||||||+|||++ |++| ||.+|+++||+|+|+|++++
T Consensus 155 ~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~~rG~~----~~~~-ai~~G~~~tG~TvH~v~~~~ 229 (286)
T PRK13011 155 AQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGAK----PYHQ-AYERGVKLIGATAHYVTDDL 229 (286)
T ss_pred HHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEeccccCCCCCCCc----HHHH-HHHCCCCeEEEEEEEEcCCC
Confidence 778999999999999999999999999999999999999999999999987 6666 59999999999999999999
Q ss_pred CCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCe
Q 022631 229 DTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGV 281 (294)
Q Consensus 229 D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~~ 281 (294)
|+||||+|+.++|.++||+++|.+|+..+|+++|+++|+.++++++......+
T Consensus 230 D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~E~~~~~~ai~~~~~~~~~~~~~~~ 282 (286)
T PRK13011 230 DEGPIIEQDVERVDHAYSPEDLVAKGRDVECLTLARAVKAHIERRVFLNGNRT 282 (286)
T ss_pred cCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 99999999999999999999999999999999999999999999987654433
No 9
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=100.00 E-value=1.2e-47 Score=339.22 Aligned_cols=189 Identities=36% Similarity=0.623 Sum_probs=176.8
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCC
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNV 160 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~ 160 (294)
+|||||+||+|||++++++++.++.++++|++||+|++++++.++|+++|||++.++......++.+++++.+.|+++++
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 58999999999999999999999988899999999999999999999999999987655444445567889999999999
Q ss_pred cEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEEEEe
Q 022631 161 DFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVP 240 (294)
Q Consensus 161 DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~~~~ 240 (294)
|++|+++|++|||+++++.++.++||+|||+||+|||++ |++| ||.+|++++|+|+|+|++++|+||||.|++++
T Consensus 81 D~iv~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~----p~~~-ai~~g~~~tGvTih~v~~~~D~G~Ii~q~~~~ 155 (190)
T TIGR00639 81 DLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLH----AVEQ-ALEAGVKESGCTVHYVDEEVDTGPIIAQAKVP 155 (190)
T ss_pred CEEEEeCcchhCCHHHHhhccCCEEEEeCCcccCCCCcc----HHHH-HHHcCCCeEEEEEEEEcCCCcCCCEEEEEEEE
Confidence 999999999999999999999999999999999999987 7777 59999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Q 022631 241 VLWNDTAEDLAARVLLEEHRLYVDVASALCEERV 274 (294)
Q Consensus 241 I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i 274 (294)
|.++||.++|++|+...++++++++++++.+|++
T Consensus 156 i~~~dt~~~L~~k~~~~~~~l~~~~l~~~~~g~~ 189 (190)
T TIGR00639 156 ILPEDTEETLEQRIHKQEHRIYPLAIAWFAQGRL 189 (190)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999875
No 10
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=100.00 E-value=1.1e-47 Score=341.96 Aligned_cols=197 Identities=39% Similarity=0.620 Sum_probs=181.6
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN 159 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~ 159 (294)
++||+||+||+|+|++++++++.++.+.++|++|||+++++.+.++|++.|||++.++..+...++.+++++.+.|++++
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQ 80 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhC
Confidence 47999999999999999999999988889999999999999999999999999998775444334445678899999999
Q ss_pred CcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEEEE
Q 022631 160 VDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVV 239 (294)
Q Consensus 160 ~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~~~ 239 (294)
+|++|+++|++|||+++++.+++++||+|||+||+|||++ |++| ||.+|++++|+|+|+|++++|+||||.|+++
T Consensus 81 ~D~iv~~~~~~ii~~~~l~~~~~~~iNiHpslLP~yrG~~----p~~~-ai~~g~~~tG~Tvh~~~~~~D~G~Ii~q~~~ 155 (200)
T PRK05647 81 PDLVVLAGFMRILGPTFVSAYEGRIINIHPSLLPSFPGLH----THEQ-ALEAGVKVHGCTVHFVDEGLDTGPIIAQAAV 155 (200)
T ss_pred cCEEEhHHhhhhCCHHHHhhccCCEEEEeCccccCCCCcc----HHHH-HHHcCCCeEEEEEEEEcCCCcCCCeEEEEEE
Confidence 9999999999999999999999999999999999999987 7777 5999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCe
Q 022631 240 PVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGV 281 (294)
Q Consensus 240 ~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~~ 281 (294)
+|.++||.++|+.|+..++.++++++++.+.+|++.+++++.
T Consensus 156 ~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~~~~~~ 197 (200)
T PRK05647 156 PVLAGDTEESLAARVLEQEHRLYPLVVKWFAEGRLKLEGRKA 197 (200)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeeCCEE
Confidence 999999999999999999999999999999999998775543
No 11
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=100.00 E-value=1.2e-42 Score=304.36 Aligned_cols=181 Identities=33% Similarity=0.534 Sum_probs=159.5
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCC
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNV 160 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~ 160 (294)
+||+||+||+|++++.+++++..+..++++++|||++++..+...|.+.+++...+....+.++..+++++.+.++++++
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLESLNP 80 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHHTT-
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEeccccCCCchHhhhhHHHHHHHhhcc
Confidence 69999999999999999999998876678999999999988889999999999888776665555677899999999999
Q ss_pred cEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEEEEe
Q 022631 161 DFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVP 240 (294)
Q Consensus 161 DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~~~~ 240 (294)
|++|+++|+++||+++++.+++++||+|||+||.|||++ |++| +|.+|++++|+|+|++++++|+||||.|+.++
T Consensus 81 Dl~v~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~----p~~~-ai~~g~~~~G~Tvh~~~~~~D~G~Ii~q~~~~ 155 (181)
T PF00551_consen 81 DLIVVAGYGRILPKEFLSIPPYGIINIHPSLLPKYRGAS----PIQW-AILNGEKETGVTVHFMDEGLDAGPIIAQKKFP 155 (181)
T ss_dssp SEEEESS-SS---HHHHHHSTTSEEEEESSSTTTTBSST----HHHH-HHHHTSSEEEEEEEEE-SSTTTSEEEEEEEEE
T ss_pred ceeehhhhHHHhhhhhhhcccccEEEEeecCCccCCCcc----hhhh-hhcCCcceeeeEEEEecccCcCCCeEEEEEEE
Confidence 999999999999999999999999999999999999997 8877 59999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022631 241 VLWNDTAEDLAARVLLEEHRLYVDVA 266 (294)
Q Consensus 241 I~~~dt~~~L~~rl~~~~~~ll~~~l 266 (294)
|.++||.++|.+|+.+++.++++++|
T Consensus 156 i~~~dt~~~l~~r~~~~~~~~l~~ai 181 (181)
T PF00551_consen 156 IEPDDTAESLYERLAEAEAELLVEAI 181 (181)
T ss_dssp --TT--HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999986
No 12
>PLN02285 methionyl-tRNA formyltransferase
Probab=100.00 E-value=1.8e-40 Score=316.21 Aligned_cols=187 Identities=25% Similarity=0.351 Sum_probs=167.5
Q ss_pred CCceeEEEEEeC--CchHHHHHHHHHHcCCCCceEEEEecCCCCC----------ccHHHHHhCCCCEEEcCCCCCCCCC
Q 022631 78 IKKKNLAVFVSG--GGSNFRSIHAACLAGSVYGDVVVLVTNKPDC----------GGAEYARDNSIPVILFPKTKDEPNG 145 (294)
Q Consensus 78 ~~~~rIaVl~SG--~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~----------~~~~~A~~~gIP~~~~~~~~~~~~~ 145 (294)
++++||++|.|+ +-++|++|+++.+.+..+++|++|||+++++ +++++|+++|||++.+.. +..
T Consensus 4 ~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~----~~~ 79 (334)
T PLN02285 4 GRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFT----PEK 79 (334)
T ss_pred CCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecC----ccc
Confidence 457888888777 3689999999988887778999999998764 378999999999653321 223
Q ss_pred CChhHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEec
Q 022631 146 LSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVD 225 (294)
Q Consensus 146 ~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~ 225 (294)
.+++++++.|+++++|++|+++||+|||+++++.+++|+||+||||||+|||++ |++|+ |.+|+++||+|+|+|+
T Consensus 80 ~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSLLP~yRG~~----pi~~a-i~~G~~~tGvTih~~~ 154 (334)
T PLN02285 80 AGEEDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAA----PVQRA-LQDGVNETGVSVAFTV 154 (334)
T ss_pred cCCHHHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEecccccCCCCcC----HHHHH-HHcCCCcEEEEEEEEC
Confidence 556788899999999999999999999999999999999999999999999997 88875 9999999999999999
Q ss_pred CCCCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 022631 226 EHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEER 273 (294)
Q Consensus 226 ~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~ 273 (294)
+++|+||||+|+.++|.++||.++|++|+..+++++++++|..+.+|+
T Consensus 155 ~~~D~G~Ii~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~~~ 202 (334)
T PLN02285 155 RALDAGPVIAQERVEVDEDIKAPELLPLLFELGTKLLLRELPSVLDGS 202 (334)
T ss_pred CCccCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999885
No 13
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-38 Score=299.26 Aligned_cols=159 Identities=30% Similarity=0.453 Sum_probs=147.2
Q ss_pred ceEEEEecCCCC----------CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccChhHH
Q 022631 108 GDVVVLVTNKPD----------CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELI 177 (294)
Q Consensus 108 ~eI~~Vvt~~~~----------~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l 177 (294)
++|++|+|+++. .+++++|.++|||++. |..++++++.+.++++++|++|++.|++|||+++|
T Consensus 25 ~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~q-------P~~l~~~e~~~~l~~l~~D~ivvvayG~ilp~~iL 97 (307)
T COG0223 25 HEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQ-------PEKLNDPEFLEELAALDPDLIVVVAYGQILPKEIL 97 (307)
T ss_pred CceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceec-------cccCCcHHHHHHHhccCCCEEEEEehhhhCCHHHH
Confidence 799999998764 2578999999999774 44566778999999999999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEEEEeCCCCCCHHHHHHHHHHH
Q 022631 178 RAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLE 257 (294)
Q Consensus 178 ~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~ 257 (294)
+.+++||||+||||||+|||++ |+||+ |.||+++||+|+|+|++++|+|||++|+.++|.+.||..+|++|+...
T Consensus 98 ~~~~~G~iNvH~SLLPr~RGaA----PIq~a-I~~Gd~~TGvTim~M~~~lDaG~Il~q~~~~I~~~dta~~L~~kLa~~ 172 (307)
T COG0223 98 DLPPYGCINLHPSLLPRYRGAA----PIQWA-ILNGDTETGVTIMQMDEGLDAGDILAQREVPIEPDDTAGSLHDKLAEL 172 (307)
T ss_pred hcCcCCeEEecCccCccccCcc----HHHHH-HHcCCcccceEEEEccccCCCcceeeeEEeccCCcccHHHHHHHHHHH
Confidence 9999999999999999999998 99985 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCeeeec
Q 022631 258 EHRLYVDVASALCEERVVWRE 278 (294)
Q Consensus 258 ~~~ll~~~l~~l~~g~i~~~~ 278 (294)
+.+++.+++..+.+|.+....
T Consensus 173 ga~lL~~~L~~i~~g~~~~~~ 193 (307)
T COG0223 173 GAELLLETLPQLEAGTLTPIP 193 (307)
T ss_pred HHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999865444
No 14
>PRK06988 putative formyltransferase; Provisional
Probab=100.00 E-value=7.6e-38 Score=295.72 Aligned_cols=181 Identities=29% Similarity=0.380 Sum_probs=156.4
Q ss_pred ceeEEEEEeCC--chHHHHHHHHHHcCCCCceEEEEecCCCC-------CccHHHHHhCCCCEEEcCCCCCCCCCCChhH
Q 022631 80 KKNLAVFVSGG--GSNFRSIHAACLAGSVYGDVVVLVTNKPD-------CGGAEYARDNSIPVILFPKTKDEPNGLSPND 150 (294)
Q Consensus 80 ~~rIaVl~SG~--gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~-------~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~ 150 (294)
++||++|.++. -.+|+.|++ . .++|++|+|+++. .++.++|+++|||++... ..++++
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~----~--~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~-------~~~~~~ 68 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLA----R--GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPA-------DPNDPE 68 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHh----C--CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccc-------cCCCHH
Confidence 47888886552 234444433 2 3689999998643 256899999999998532 245678
Q ss_pred HHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCC
Q 022631 151 LVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDT 230 (294)
Q Consensus 151 l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~ 230 (294)
+++.|+++++|++|+++|++|||+++++.+++|+||+|||+||+|||++ |++|+ |.+|++++|+|+|+|++++|+
T Consensus 69 ~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~----pi~~a-i~~g~~~tGvTih~~~~~~D~ 143 (312)
T PRK06988 69 LRAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRV----PVNWA-VLNGETETGATLHEMVAKPDA 143 (312)
T ss_pred HHHHHHhcCCCEEEEehhccccCHHHHhcCCCCEEEeeCccccCCCCcC----HHHHH-HHcCCCceEEEEEEECCCCCC
Confidence 8999999999999999999999999999999999999999999999997 88885 899999999999999999999
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec
Q 022631 231 GRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWRE 278 (294)
Q Consensus 231 G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~ 278 (294)
|||++|+.++|.++||..+|++|+..++.+++.+++..+.+|++...+
T Consensus 144 G~Il~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~ 191 (312)
T PRK06988 144 GAIVDQTAVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLAGEAPHLP 191 (312)
T ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 999999999999999999999999999999999999999998765444
No 15
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.2e-38 Score=286.17 Aligned_cols=212 Identities=25% Similarity=0.377 Sum_probs=195.4
Q ss_pred cCCCCcceeeecCCCCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCC
Q 022631 64 KNNGDKYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEP 143 (294)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~ 143 (294)
....|.|+|++..+..++||+||+|.-++||..|+-.+..|.++.+|++||+|.++ ....++.+|||++.++.++..
T Consensus 74 ~a~~f~m~~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~d--l~~~v~~~~IPfhhip~~~~~- 150 (287)
T COG0788 74 LAEEFGMDWRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDD--LRPLVERFDIPFHHIPVTKEN- 150 (287)
T ss_pred HHHhhCceeEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHH--HHHHHHHcCCCeeeccCCCCc-
Confidence 34567799999999999999999999999999999999999999999999999986 568999999999999876543
Q ss_pred CCCChhHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEE
Q 022631 144 NGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHF 223 (294)
Q Consensus 144 ~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~ 223 (294)
+...++.+++.++++++|++|+|.||+||+++|++++++++||||+|+||.|.|+.|| ++|..+|.+..|+|.||
T Consensus 151 k~e~E~~~~~ll~~~~~DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA~PY-----~QA~eRGVKlIGATAHY 225 (287)
T COG0788 151 KAEAEARLLELLEEYGADLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPY-----HQAYERGVKLIGATAHY 225 (287)
T ss_pred chHHHHHHHHHHHHhCCCEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCCChH-----HHHHhcCCeEeeeeeee
Confidence 3456788999999999999999999999999999999999999999999999999843 56799999999999999
Q ss_pred ecCCCCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCeee
Q 022631 224 VDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPV 283 (294)
Q Consensus 224 v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~~~~ 283 (294)
|++.+|.||||.|..++|+..+|++++..+-...|...|.++++.-+++|+....+...+
T Consensus 226 VT~dLDeGPIIeQdv~rV~H~~s~ed~~~~GrDvE~~VLARAv~~hle~Rv~v~gnkTVV 285 (287)
T COG0788 226 VTADLDEGPIIEQDVIRVDHAYSVEDLVRAGRDVEKLVLARAVKAHLEDRVFVNGNKTVV 285 (287)
T ss_pred ccCCCCCCCceeeeeeecCccCCHHHHHHhCCcHHHHHHHHHHHHHhcceEEEeCCeEEe
Confidence 999999999999999999999999999999999999999999999999999887766554
No 16
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=100.00 E-value=9.2e-37 Score=287.78 Aligned_cols=183 Identities=26% Similarity=0.351 Sum_probs=155.7
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC----------CccHHHHHhCCCCEEEcCCCCCCCCCCChhH
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD----------CGGAEYARDNSIPVILFPKTKDEPNGLSPND 150 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~----------~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~ 150 (294)
+||++| |++.-....++++... .++|++|||.++. .++.++|+++|||++... .+++++
T Consensus 1 mkIvf~--G~~~~a~~~L~~L~~~--~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~-------~~~~~~ 69 (309)
T PRK00005 1 MRIVFM--GTPEFAVPSLKALLES--GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPE-------KLRDPE 69 (309)
T ss_pred CEEEEE--CCCHHHHHHHHHHHHC--CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcC-------CCCCHH
Confidence 367777 3333333344444332 4689999997643 246899999999987533 244678
Q ss_pred HHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCC
Q 022631 151 LVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDT 230 (294)
Q Consensus 151 l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~ 230 (294)
+++.|+++++|++|+++|++|||+++++.+++|+||+|||+||+|||++ |++|+ |.+|++++|+|+|+|++++|+
T Consensus 70 ~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~----pi~wa-i~~g~~~~GvTih~~~~~~D~ 144 (309)
T PRK00005 70 FLAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGAA----PIQRA-IIAGDAETGVTIMQMDEGLDT 144 (309)
T ss_pred HHHHHHhcCcCEEEEehhhcccCHHHHhcCCCCEEEEeCcccccCCCcc----HHHHH-HHcCCCeEEEEEEEECCcccC
Confidence 8999999999999999999999999999999999999999999999987 88885 899999999999999999999
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecC
Q 022631 231 GRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWRED 279 (294)
Q Consensus 231 G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~ 279 (294)
||||+|++++|.++||..+|++|+..++.+++.+++..+.+|.+..+++
T Consensus 145 G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~~~Q 193 (309)
T PRK00005 145 GDMLLKAEVPITPTDTAGELHDKLAELGADLLVETLKGLEDGTLTPIPQ 193 (309)
T ss_pred CCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecC
Confidence 9999999999999999999999999999999999999999998766553
No 17
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=100.00 E-value=1.4e-36 Score=287.09 Aligned_cols=181 Identities=24% Similarity=0.344 Sum_probs=154.2
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC----------CccHHHHHhCCCCEEEcCCCCCCCCCCChhHH
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD----------CGGAEYARDNSIPVILFPKTKDEPNGLSPNDL 151 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~----------~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l 151 (294)
||++| |++.-....++++... .++|++|+|+++. .++.++|+++|||++...+ .+++++
T Consensus 2 kIvf~--Gs~~~a~~~L~~L~~~--~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~-------~~~~~~ 70 (313)
T TIGR00460 2 RIVFF--GTPTFSLPVLEELRED--NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEK-------QRQLEE 70 (313)
T ss_pred EEEEE--CCCHHHHHHHHHHHhC--CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCC-------CCcHHH
Confidence 66666 4333333444444332 3789999998653 2378999999999987543 233577
Q ss_pred HHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCC
Q 022631 152 VAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTG 231 (294)
Q Consensus 152 ~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G 231 (294)
++.++++++|++|+++|++|||+++++.+++|+||+|||+||+|||++ |++|+ |.+|++++|+|+|+|++++|+|
T Consensus 71 ~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpSlLP~yRG~~----pi~wa-i~~G~~~tGvTih~~~~~~D~G 145 (313)
T TIGR00460 71 LPLVRELKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGGA----PIQRA-ILNGDKKTGVTIMQMVPKMDAG 145 (313)
T ss_pred HHHHHhhCCCEEEEccchhhCCHHHHhhccCCEEEecCccccCCCCcc----HHHHH-HHCCCCeEEEEEEEEccccCCC
Confidence 888999999999999999999999999999999999999999999998 88885 8999999999999999999999
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec
Q 022631 232 RILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWRE 278 (294)
Q Consensus 232 ~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~ 278 (294)
|||.|+.++|.++||..+|++|+..++.+++.+++..+.+|.+..++
T Consensus 146 ~Ii~q~~~~I~~~~t~~~l~~~l~~~~~~ll~~~l~~l~~~~~~~~~ 192 (313)
T TIGR00460 146 DILKQETFPIEEEDNSGTLSDKLSELGAQLLIETLKELPEGKNKPEP 192 (313)
T ss_pred CeEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 99999999999999999999999999999999999999999865433
No 18
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=100.00 E-value=5.6e-34 Score=292.51 Aligned_cols=182 Identities=23% Similarity=0.256 Sum_probs=156.5
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC-------CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHH
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD-------CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAA 154 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~-------~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~ 154 (294)
||++| |++.-....++++... .++|++|+|.++. .++.++|+++|||++... .++++++++.
T Consensus 2 kivf~--g~~~~a~~~l~~L~~~--~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~-------~~~~~~~~~~ 70 (660)
T PRK08125 2 KAVVF--AYHDIGCVGIEALLAA--GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPE-------DVNHPLWVER 70 (660)
T ss_pred eEEEE--CCCHHHHHHHHHHHHC--CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeC-------CCCcHHHHHH
Confidence 66666 4443334444554432 4689999997653 147899999999998643 2456788899
Q ss_pred HHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceE
Q 022631 155 LSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRIL 234 (294)
Q Consensus 155 L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II 234 (294)
|+++++|++|+++|++|||+++++.+++|+||+|||+||+|||++ |++|+ |.+|++++|+|+|+|++++|+||||
T Consensus 71 l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~slLP~yRG~~----p~~wa-i~~g~~~~GvTi~~~~~~~D~G~I~ 145 (660)
T PRK08125 71 IRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRA----PLNWV-LVNGETETGVTLHRMVKRADAGAIV 145 (660)
T ss_pred HHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCCcccCCCCcC----HHHHH-HHcCCCcEEEEEEEECCCccCCCee
Confidence 999999999999999999999999999999999999999999997 88885 9999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecC
Q 022631 235 AQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWRED 279 (294)
Q Consensus 235 ~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~ 279 (294)
.|+.++|.++||..+|++|+..++.+++.++|..|.+|++...++
T Consensus 146 ~q~~~~i~~~dt~~~l~~~l~~~~~~l~~~~l~~i~~~~~~~~~Q 190 (660)
T PRK08125 146 AQQRVAIAPDDTALTLHHKLCHAARQLLEQTLPAIKHGNIPEIPQ 190 (660)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence 999999999999999999999999999999999999998765543
No 19
>PRK07579 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=251.55 Aligned_cols=173 Identities=21% Similarity=0.244 Sum_probs=138.2
Q ss_pred ceeEEEEEeC--CchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh
Q 022631 80 KKNLAVFVSG--GGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE 157 (294)
Q Consensus 80 ~~rIaVl~SG--~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~ 157 (294)
+|||.|+... +-.|++.|+... +.+++++.+|.++.+.-. +..+++|...++-. +.+.+.++
T Consensus 1 ~k~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---------~~~~~~~~- 64 (245)
T PRK07579 1 MKTILVLTDNVHAHALAVDLIARK--NDMDVDYFCSFKSQTSFA----KEIYQSPIKQLDVA---------ERVAEIVE- 64 (245)
T ss_pred CceEEEEcccHHHHHHHHHHHhhc--cCcceEEEEeccCCcccc----cccccccccCcchh---------hhHHhhhc-
Confidence 4788888544 336677777653 356789999998765421 11234443332211 23334444
Q ss_pred cCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEE
Q 022631 158 VNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQR 237 (294)
Q Consensus 158 ~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~ 237 (294)
++|++|+++|++|||+++++.+ ++||+||||||+|||++ |++|+ |.+|++ ||+|+|+|++++|+||||.|+
T Consensus 65 -~~DliVvvayg~ilp~~iL~~~--~~iNiHpSLLP~yRGaa----Pi~wA-I~nGe~-tGvTih~mde~lDtGdIi~Q~ 135 (245)
T PRK07579 65 -RYDLVLSFHCKQRFPAKLVNGV--RCINIHPGFNPYNRGWF----PQVFS-IINGLK-IGATIHEMDEQLDHGPIIAQR 135 (245)
T ss_pred -CCCEEEEchhhccCCHHHHhhC--CEEEEcCCcCCCCCCcC----HHHHH-HHCCCe-EEEEEEEEcCCCCCCCeeEEE
Confidence 4999999999999999999976 69999999999999997 88885 899985 999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeee
Q 022631 238 VVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWR 277 (294)
Q Consensus 238 ~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~ 277 (294)
.++|.++||+++|++|+..++.+++.++|..+.+|++...
T Consensus 136 ~v~I~~~dt~~sL~~kl~~~~~~ll~e~L~~i~~g~~~~~ 175 (245)
T PRK07579 136 EVEIESWDSSGSVYARVMDIERELVLEHFDAIRDGSYTAK 175 (245)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 9999999999999999999999999999999999976443
No 20
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.2e-25 Score=207.70 Aligned_cols=138 Identities=27% Similarity=0.395 Sum_probs=120.9
Q ss_pred ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCC
Q 022631 121 GGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGY 200 (294)
Q Consensus 121 ~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~ 200 (294)
++...|...|+++...-.. ++.++ .+.+.++|++|.|+|+++||.++|+.+++|+||+||||||+|||++
T Consensus 52 P~a~~a~~k~la~~kl~p~----~k~~~-----d~~~~~~~l~ItaSfGrllp~kll~~~pyg~iNVHPSLLPk~RGaA- 121 (338)
T KOG3082|consen 52 PAAMEANAKGLAYIKLQPG----WKNFH-----DLMRPDDQLAITASFGRLLPFKLLNQLPYGGINVHPSLLPKYRGAA- 121 (338)
T ss_pred ccccccccccceeeeccCh----hhccc-----cccCCCcceEEEeehhccCcHHHHhhCCcceeecChhhcccccCcc-
Confidence 3446678888887765321 11222 3467799999999999999999999999999999999999999998
Q ss_pred CcchHHHHHHHcCCCEEEEEEEEecC-CCCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022631 201 YGMKVHKAVIASGARYSGPTIHFVDE-HYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEE 272 (294)
Q Consensus 201 yg~pv~~~aI~~G~~~tGvTvH~v~~-~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g 272 (294)
|++++ |.+|++.|||||.+++. .+|.||||+|+.++|.+..|..+|..-+...++.++++.+..+-++
T Consensus 122 ---PV~~a-ll~GD~~TGVTI~~i~p~rFD~G~ilAQ~~l~v~~~~t~~~L~~~Ls~~ga~lLir~l~~l~dq 190 (338)
T KOG3082|consen 122 ---PVQRA-LLNGDTLTGVTIQTIDPKRFDKGPILAQEYLAVNPKETAPELTASLSSLGANLLIRSLYNLNDQ 190 (338)
T ss_pred ---hHHHH-HhcCCcccceEEEEecccccccccceecceeccCccccchHHHHHHHhccchhhHHhhccchhh
Confidence 99985 89999999999999996 9999999999999999999999999999999999999999988765
No 21
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.85 E-value=3.6e-21 Score=186.62 Aligned_cols=190 Identities=25% Similarity=0.343 Sum_probs=154.8
Q ss_pred eeEEEEEeCCchHHHH-HHHHHHcCCCCceEEEEecCCCCC----ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHH
Q 022631 81 KNLAVFVSGGGSNFRS-IHAACLAGSVYGDVVVLVTNKPDC----GGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAAL 155 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~-ll~~~~~~~~~~eI~~Vvt~~~~~----~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L 155 (294)
+||+|+ +.|.|.. +...++.. .++|++|+|-++.. ++.--|.+-|+|++...+.+ .++..-.++++..
T Consensus 1 mkiaii---gqs~fg~~vy~~lrk~--gheiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr--~k~~~lp~~~~~y 73 (881)
T KOG2452|consen 1 MKIAVI---GQSLFGQEVYCHLRKE--GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWR--AKAQALPDVVAKY 73 (881)
T ss_pred CeeEEe---chhhhhHHHHHHHHhc--CceEEEEEEecCCCCCcCcccccccccCcceechhhhh--hhccccHHHHHHH
Confidence 478888 4566643 33333322 47999999966532 22334777899998766432 3334457888999
Q ss_pred HhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEE
Q 022631 156 SEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILA 235 (294)
Q Consensus 156 ~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~ 235 (294)
+.++.+|-|+.-+.++||-++++++..+.|-.|||+||+.||++ .++|. +..|+++.|.+++|.|+++|+|||++
T Consensus 74 ~~~gaelnvlpfcsqfip~ei~~ap~~~siiyhps~lp~hrgas----ainwt-li~gd~~~g~sifwaddgldtg~~ll 148 (881)
T KOG2452|consen 74 QALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGAS----AINWT-LIHGDKKGGFSIFWADDGLDTGDLLL 148 (881)
T ss_pred HhhcccccccchhhhccchhhcccccCCceeeccccCccccCcc----ccceE-EEeccccCceEEEeecCCccccchhh
Confidence 99999999999999999999999999999999999999999998 46775 78999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHhCC---eeeecCCee
Q 022631 236 QRVVPVLWNDTAEDLAAR-VLLEEHRLYVDVASALCEER---VVWREDGVP 282 (294)
Q Consensus 236 Q~~~~I~~~dt~~~L~~r-l~~~~~~ll~~~l~~l~~g~---i~~~~~~~~ 282 (294)
|+++.+.++||..+||+| ++.++...+.++++.|++|+ +...++|..
T Consensus 149 qk~c~v~~~dt~~tly~rfl~p~gi~~v~~~v~lia~gkapr~~qpeegas 199 (881)
T KOG2452|consen 149 QKECEVLPDDTVSTLYNRFLFPEGIKGVVQAVRLIAEGKAPRLPQPEEGAT 199 (881)
T ss_pred hhhcccCCCccHHHHHHhhcChHHHHHHHHHHHHHhcCCCCCCCCcccCCc
Confidence 999999999999999999 56788999999999999995 445556653
No 22
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=93.99 E-value=0.32 Score=44.41 Aligned_cols=81 Identities=28% Similarity=0.411 Sum_probs=56.5
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCc------------cHHHHHhCCCCEEEcCCCCCCCCCCCh
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCG------------GAEYARDNSIPVILFPKTKDEPNGLSP 148 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~------------~~~~A~~~gIP~~~~~~~~~~~~~~~d 148 (294)
.|.++|.|||--.+-+++.+.+.| ++|..+++-.+..+ +...|+..|||++....... ++..-
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~--~e~ev 75 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGE--EEREV 75 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCcc--chhhH
Confidence 367889999887777888888776 56766665443211 34689999999888765431 11123
Q ss_pred hHHHHHHHhcCCcEEEEe
Q 022631 149 NDLVAALSEVNVDFILLA 166 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~a 166 (294)
+++.+.|+..++|.||+-
T Consensus 76 e~L~~~l~~l~~d~iv~G 93 (223)
T COG2102 76 EELKEALRRLKVDGIVAG 93 (223)
T ss_pred HHHHHHHHhCcccEEEEc
Confidence 677888999999998853
No 23
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=93.03 E-value=0.52 Score=43.06 Aligned_cols=85 Identities=19% Similarity=0.263 Sum_probs=57.6
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC---C------c---cHHHHHhCCCCEEEcCCCCCCCCCCChh
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD---C------G---GAEYARDNSIPVILFPKTKDEPNGLSPN 149 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~---~------~---~~~~A~~~gIP~~~~~~~~~~~~~~~d~ 149 (294)
|++++.|||--+.-+++.+.+. ++|++++|-.+. . + +...|+..|||++.+.... ..+...+
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~--~~e~~~e 75 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEG--TEEDEVE 75 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCC--CccHHHH
Confidence 6788999988777788877654 467777664332 1 1 3478999999987754321 1223456
Q ss_pred HHHHHHHhcCCcEEEEeccccccChh
Q 022631 150 DLVAALSEVNVDFILLAGYLKLIPME 175 (294)
Q Consensus 150 ~l~~~L~~~~~DliV~agy~~ilp~~ 175 (294)
++.+.|++.++|.+| ||-|....
T Consensus 76 ~l~~~l~~~gv~~vv---~GdI~s~~ 98 (223)
T TIGR00290 76 ELKGILHTLDVEAVV---FGAIYSEY 98 (223)
T ss_pred HHHHHHHHcCCCEEE---ECCcccHH
Confidence 777888888999888 56676654
No 24
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=92.85 E-value=0.3 Score=44.43 Aligned_cols=88 Identities=25% Similarity=0.264 Sum_probs=51.1
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCC---CC---------ccHHHHHhCCCCEEEcCCCCCCCCCCCh
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKP---DC---------GGAEYARDNSIPVILFPKTKDEPNGLSP 148 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~---~~---------~~~~~A~~~gIP~~~~~~~~~~~~~~~d 148 (294)
+|++++.|||--+.-+++.+.+. ++|++++|-.+ +. -+...|+..|||++.+..... .+...
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~--~~~~~ 74 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGD--EEDYV 74 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE-----CCCHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCc--cchhh
Confidence 48899999988777778777654 57777766432 11 135789999999887764321 12345
Q ss_pred hHHHHHHHhcCCcEEEEeccccccChhHH
Q 022631 149 NDLVAALSEVNVDFILLAGYLKLIPMELI 177 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy~~ilp~~~l 177 (294)
+++.+.|++.++|.+| ||-|......
T Consensus 75 ~~l~~~l~~~~v~~vv---~GdI~~~~~r 100 (218)
T PF01902_consen 75 EDLKEALKELKVEAVV---FGDIDSEYQR 100 (218)
T ss_dssp HHHHHHHCTC--SEEE-----TTS-HHHH
T ss_pred HHHHHHHHHcCCCEEE---ECcCCcHHHH
Confidence 6788889999998887 5677665443
No 25
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=91.39 E-value=1.1 Score=39.86 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=51.9
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC---C---------ccHHHHHhCCCCEEEcCCCCCCCCCCChh
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD---C---------GGAEYARDNSIPVILFPKTKDEPNGLSPN 149 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~---~---------~~~~~A~~~gIP~~~~~~~~~~~~~~~d~ 149 (294)
|++|++|||--..-++..+...| .+++++++..+. . -+...|+..|||++.++... ..+...+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~--~~e~~~~ 75 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISG--EEEDEVE 75 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCC--CchHHHH
Confidence 68899999775555555555544 467777765322 1 13578999999988776322 1122335
Q ss_pred HHHHHHHhcC---CcEEEEeccccccCh
Q 022631 150 DLVAALSEVN---VDFILLAGYLKLIPM 174 (294)
Q Consensus 150 ~l~~~L~~~~---~DliV~agy~~ilp~ 174 (294)
++.+.|++.. ++.+| +|-+..+
T Consensus 76 ~l~~~l~~~~~~g~~~vv---~G~i~sd 100 (194)
T cd01994 76 DLKELLRKLKEEGVDAVV---FGAILSE 100 (194)
T ss_pred HHHHHHHHHHHcCCCEEE---ECccccH
Confidence 5656665544 77666 4566655
No 26
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=91.13 E-value=1.2 Score=40.73 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=56.0
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCC------------ccHHHHHhCCCCEEEcCCCCCCCCCCCh
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDC------------GGAEYARDNSIPVILFPKTKDEPNGLSP 148 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~------------~~~~~A~~~gIP~~~~~~~~~~~~~~~d 148 (294)
+|++++.|||--..-+++.+... ++|++++|..++. -+...|+..|||++.+..... .+..-
T Consensus 1 Mkv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~--~e~~~ 74 (222)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE--EEKEV 74 (222)
T ss_pred CeEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCc--hhHHH
Confidence 37899999987666666666543 4777777754431 135789999999876643221 11123
Q ss_pred hHHHHHHHhcCCcEEEEeccccccCh
Q 022631 149 NDLVAALSEVNVDFILLAGYLKLIPM 174 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy~~ilp~ 174 (294)
+++.+.|++.+++-+| ||-|...
T Consensus 75 ~~l~~~l~~~gv~~vv---~GdI~s~ 97 (222)
T TIGR00289 75 EDLAGQLGELDVEALC---IGAIESN 97 (222)
T ss_pred HHHHHHHHHcCCCEEE---ECccccH
Confidence 4667777888898887 4667665
No 27
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=89.63 E-value=1.3 Score=42.27 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=34.7
Q ss_pred CceeEEEEEeCC-chHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEE
Q 022631 79 KKKNLAVFVSGG-GSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVI 134 (294)
Q Consensus 79 ~~~rIaVl~SG~-gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~ 134 (294)
++.|++|+.+|. |+. ++..+.. ....++++|+...++...+++|+++|+|+.
T Consensus 3 ~klrVAIIGtG~IGt~---hm~~l~~-~~~velvAVvdid~es~gla~A~~~Gi~~~ 55 (302)
T PRK08300 3 SKLKVAIIGSGNIGTD---LMIKILR-SEHLEPGAMVGIDPESDGLARARRLGVATS 55 (302)
T ss_pred CCCeEEEEcCcHHHHH---HHHHHhc-CCCcEEEEEEeCChhhHHHHHHHHcCCCcc
Confidence 468899997664 333 2333332 225789988876666556688999999975
No 28
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=89.21 E-value=1.6 Score=34.46 Aligned_cols=70 Identities=29% Similarity=0.357 Sum_probs=43.2
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCc
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVD 161 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~D 161 (294)
||+|+ |.|.--+..+..........++++|+...+ ....+.+++.|++.+ . ++.+.+...++|
T Consensus 2 ~v~ii--G~G~~g~~~~~~~~~~~~~~~v~~v~d~~~-~~~~~~~~~~~~~~~--~------------~~~~ll~~~~~D 64 (120)
T PF01408_consen 2 RVGII--GAGSIGRRHLRALLRSSPDFEVVAVCDPDP-ERAEAFAEKYGIPVY--T------------DLEELLADEDVD 64 (120)
T ss_dssp EEEEE--STSHHHHHHHHHHHHTTTTEEEEEEECSSH-HHHHHHHHHTTSEEE--S------------SHHHHHHHTTES
T ss_pred EEEEE--CCcHHHHHHHHHHHhcCCCcEEEEEEeCCH-HHHHHHHHHhcccch--h------------HHHHHHHhhcCC
Confidence 66666 555544444444444333567877765433 235567899999944 1 234566667999
Q ss_pred EEEEecc
Q 022631 162 FILLAGY 168 (294)
Q Consensus 162 liV~agy 168 (294)
+++++.-
T Consensus 65 ~V~I~tp 71 (120)
T PF01408_consen 65 AVIIATP 71 (120)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998754
No 29
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=89.19 E-value=3.7 Score=40.22 Aligned_cols=225 Identities=16% Similarity=0.091 Sum_probs=124.8
Q ss_pred CccCCCCCCCccccccccccceeeccccccccccccccceeeeecCcccccCCCCcceeeecCCCCceeEEEEEeCCchH
Q 022631 14 LIQTPRKLPSLSFAQSHSHLSASFRAHKLLVPQSLRSSRRLECVNFAEKVKNNGDKYEKDFDSGIKKKNLAVFVSGGGSN 93 (294)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIaVl~SG~gs~ 93 (294)
...++++-|++-++++++||++.+.+|.+.. |+.+ =-+|- +++ ..-| | ..+
T Consensus 7 lg~~~~~~~ssc~~~a~~~n~~~~ak~~sq~-k~~~--~af~m------~~s-----------------~~rf--G-~gv 57 (465)
T KOG3857|consen 7 LGKTGVKRFSSCYHKATINNKFTFAKTNSQI-KMMS--VAFFM------IPS-----------------TSRF--G-KGV 57 (465)
T ss_pred cccccccccccccccccccCccccccccccc-ccce--eeEEe------ccc-----------------hhhh--c-chh
Confidence 3456778889999999999999999988864 3321 01111 111 0112 2 233
Q ss_pred HHHHHHHHHcCCCCceEEEEecCCCC--Cc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEec
Q 022631 94 FRSIHAACLAGSVYGDVVVLVTNKPD--CG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAG 167 (294)
Q Consensus 94 l~~ll~~~~~~~~~~eI~~Vvt~~~~--~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~ag 167 (294)
+..+-+.++.- .++-+++||++.= .+ +.+..++.||++.+++...-+|..-+-.+-++..++.++|-.|.+|
T Consensus 58 ~~Evg~dikn~--gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiG 135 (465)
T KOG3857|consen 58 LAEVGDDIKNL--GAKKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIG 135 (465)
T ss_pred HHHHHHHHHhc--CccceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEc
Confidence 44444444332 3556788887642 12 3467788999999999876555444445667888899999999998
Q ss_pred cccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCc---------chHH---HHHHHcCCCEEEEEEEEecC-CCCCCceE
Q 022631 168 YLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYG---------MKVH---KAVIASGARYSGPTIHFVDE-HYDTGRIL 234 (294)
Q Consensus 168 y~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg---------~pv~---~~aI~~G~~~tGvTvH~v~~-~~D~G~II 234 (294)
=+.-..- .++...-.-|=|.-+ =+|-|+ ++| +|++ .. ---|-+.||++|+-..+ ++-+|=|.
T Consensus 136 GGSa~Dt--aKaaaL~Asn~~~ef-lDyvg~-pigk~~~~s~p~lPLiAipTT-aGTgSEtT~~AI~d~e~~k~K~gI~~ 210 (465)
T KOG3857|consen 136 GGSAHDT--AKAAALLASNGEGEF-LDYVGP-PIGKVKQSSKPLLPLIAIPTT-AGTGSETTRFAIIDYEELKIKMGIID 210 (465)
T ss_pred Ccchhhh--HHHHHHhhcCCCccc-hhccCC-cccccccccccccceEecccC-CCccccceeeEEecchhhheeeeeec
Confidence 7654421 111100011222222 233331 000 0111 11 12466788999887664 55555333
Q ss_pred EEEE--EeCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHhCCe
Q 022631 235 AQRV--VPVLWNDTAEDLAARVLL-EEHRLYVDVASALCEERV 274 (294)
Q Consensus 235 ~Q~~--~~I~~~dt~~~L~~rl~~-~~~~ll~~~l~~l~~g~i 274 (294)
---+ ..|.+..+.-.+-.++.. .|.+.+..+|+.+-.--+
T Consensus 211 k~ikP~lav~DPl~~~~~P~~v~a~tGfDvlcHalEsyts~py 253 (465)
T KOG3857|consen 211 KNIKPTLAVNDPLTMLGLPPRVTAATGFDVLCHALESYTSTPY 253 (465)
T ss_pred ccccceeeecChHHhccCChHHhhhcchHHHHHHHHHHhcCcc
Confidence 2222 223333333333345544 478999999998876543
No 30
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=86.78 E-value=3.3 Score=39.17 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=43.2
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN 159 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~ 159 (294)
+.||+|+.+|. --..++..+.. ..+.++++|+...++...+++|+++|++...-+ .-+.++.-+
T Consensus 1 klrVAIIG~G~--IG~~h~~~ll~-~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~-------------~e~ll~~~d 64 (285)
T TIGR03215 1 KVKVAIIGSGN--IGTDLMYKLLR-SEHLEMVAMVGIDPESDGLARARELGVKTSAEG-------------VDGLLANPD 64 (285)
T ss_pred CcEEEEEeCcH--HHHHHHHHHHh-CCCcEEEEEEeCCcccHHHHHHHHCCCCEEECC-------------HHHHhcCCC
Confidence 36899997664 22222233332 225788888776555555678999999976411 112333446
Q ss_pred CcEEEEecc
Q 022631 160 VDFILLAGY 168 (294)
Q Consensus 160 ~DliV~agy 168 (294)
+|+++.+.-
T Consensus 65 IDaV~iaTp 73 (285)
T TIGR03215 65 IDIVFDATS 73 (285)
T ss_pred CCEEEECCC
Confidence 787776553
No 31
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=86.15 E-value=3.7 Score=35.15 Aligned_cols=99 Identities=20% Similarity=0.226 Sum_probs=60.5
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC--Cc----c----HHHHHhCCCCEEEcCCCCCCCCCCChh
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD--CG----G----AEYARDNSIPVILFPKTKDEPNGLSPN 149 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~--~~----~----~~~A~~~gIP~~~~~~~~~~~~~~~d~ 149 (294)
.+||+++.-+.+.....++..+.. +..+ +.+++ +++ -+ + .+.+++.|-.+...+
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~--~g~~-~~~~~-P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~------------ 65 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAK--FGME-VVLIA-PEGLRYPPDPEVLEKAKKNAKKNGGKITITD------------ 65 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHH--TTSE-EEEES-SGGGGGSHHHHHHHHHHHHHHHHTTEEEEES------------
T ss_pred CCEEEEECCCCChHHHHHHHHHHH--cCCE-EEEEC-CCcccCCCCHHHHHHHHHHHHHhCCCeEEEe------------
Confidence 467777743235567777766543 2344 34444 333 11 2 255666676665542
Q ss_pred HHHHHHHhcCCcEEEEeccc----------------cccChhHHhcCCCCEEEEcCCCCCCCCCC
Q 022631 150 DLVAALSEVNVDFILLAGYL----------------KLIPMELIRAYPRSIVNIHPSLLPAFGGK 198 (294)
Q Consensus 150 ~l~~~L~~~~~DliV~agy~----------------~ilp~~~l~~~~~g~iNiHPSlLP~yRG~ 198 (294)
++.+.++ +.|++..-.|. ..|..++++..+...+=+|| ||.+||.
T Consensus 66 ~~~e~l~--~aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~--LP~~R~~ 126 (158)
T PF00185_consen 66 DIEEALK--GADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHP--LPANRGE 126 (158)
T ss_dssp SHHHHHT--T-SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEES--SS--BTT
T ss_pred CHHHhcC--CCCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeC--CCCCCCc
Confidence 2234444 58999999998 78999999988878999998 6888884
No 32
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=84.06 E-value=4.1 Score=37.86 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=50.4
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEecc
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGY 168 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy 168 (294)
|.|+.++.+.-+..-....+++..+..+. .....+..++.|.+++.++.... ......++.+.|++.++|++|+-+|
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~-~~~~~~~i~~~g~~v~~~~~~~~--~~~d~~~~~~~l~~~~~d~vV~D~y 89 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPL-PGDLIDLLLSAGFPVYELPDESS--RYDDALELINLLEEEKFDILIVDHY 89 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHcCCeEEEecCCCc--hhhhHHHHHHHHHhcCCCEEEEcCC
Confidence 57888887655432211245676665543 32345778899999988764321 0112346889999999999999998
No 33
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=77.16 E-value=13 Score=34.41 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=47.4
Q ss_pred eEEEEEeCCchHHH---HHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCC------------
Q 022631 82 NLAVFVSGGGSNFR---SIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGL------------ 146 (294)
Q Consensus 82 rIaVl~SG~gs~l~---~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~------------ 146 (294)
||.|.+.|.+..+. .|.+.+... .+++.++ +.+.. ....+.++.|++++.++...+.....
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~--g~eV~vv-~~~~~-~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 77 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKR--GVEVLWL-GTKRG-LEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLK 77 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhC--CCEEEEE-eCCCc-chhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHH
Confidence 77777777666664 455555442 3576655 54222 12234455799988776432111000
Q ss_pred ChhHHHHHHHhcCCcEEEEecc
Q 022631 147 SPNDLVAALSEVNVDFILLAGY 168 (294)
Q Consensus 147 ~d~~l~~~L~~~~~DliV~agy 168 (294)
.-..+.+.+++.+||++++.+.
T Consensus 78 ~~~~l~~~i~~~~pDvVi~~~~ 99 (348)
T TIGR01133 78 AVFQARRILKKFKPDAVIGFGG 99 (348)
T ss_pred HHHHHHHHHHhcCCCEEEEcCC
Confidence 0124556788899999998754
No 34
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=74.72 E-value=18 Score=32.16 Aligned_cols=101 Identities=20% Similarity=0.158 Sum_probs=55.0
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN 159 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~ 159 (294)
+.|++|+ |.|..-+++...........++++++...++... .. -.|+|+.. -+++.+.+++.+
T Consensus 84 ~~rV~II--GaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~-~~--i~g~~v~~------------~~~l~~li~~~~ 146 (213)
T PRK05472 84 TWNVALV--GAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIG-TK--IGGIPVYH------------IDELEEVVKEND 146 (213)
T ss_pred CcEEEEE--CCCHHHHHHHHhhhcccCCcEEEEEEECChhhcC-CE--eCCeEEcC------------HHHHHHHHHHCC
Confidence 4566666 6566655655543223345789988876443211 11 13566431 145667788889
Q ss_pred CcEEEEecccccc---ChhHHhcCCCCEEEEcCCCCCCCCC
Q 022631 160 VDFILLAGYLKLI---PMELIRAYPRSIVNIHPSLLPAFGG 197 (294)
Q Consensus 160 ~DliV~agy~~il---p~~~l~~~~~g~iNiHPSlLP~yRG 197 (294)
+|.++++.=..-. -..+++.-...++|+.|-.+---+|
T Consensus 147 iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~ 187 (213)
T PRK05472 147 IEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPED 187 (213)
T ss_pred CCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCC
Confidence 9998877422111 1222222224677777766655444
No 35
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=73.58 E-value=17 Score=35.93 Aligned_cols=57 Identities=21% Similarity=0.023 Sum_probs=37.3
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFP 137 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~ 137 (294)
++||+||.|. ||--..-++.+....-.++|+++..+..-....+.|++++-.++.+.
T Consensus 1 mk~VaILGsT-GSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~ 57 (385)
T PRK05447 1 MKRITILGST-GSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVA 57 (385)
T ss_pred CceEEEEcCC-hHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEc
Confidence 4789999654 44444445555433336789998876644456788899887766653
No 36
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=72.81 E-value=36 Score=28.87 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=48.5
Q ss_pred eEEEEEeCCchHHH--HHHHHHHcCCCCceEEEEecCCCCC--------ccHHHHHhCCCCEEEcCCCCCCCCCCCh---
Q 022631 82 NLAVFVSGGGSNFR--SIHAACLAGSVYGDVVVLVTNKPDC--------GGAEYARDNSIPVILFPKTKDEPNGLSP--- 148 (294)
Q Consensus 82 rIaVl~SG~gs~l~--~ll~~~~~~~~~~eI~~Vvt~~~~~--------~~~~~A~~~gIP~~~~~~~~~~~~~~~d--- 148 (294)
||+|.+|||--.+- .++...... ...++.+|..+.... .+.++|+..|||+..+..........+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~-~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR-LGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAA 79 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHH
Confidence 68899999764433 333332221 134677776654321 2458899999999876211000001111
Q ss_pred ------hHHHHHHHhcCCcEEEEecccc
Q 022631 149 ------NDLVAALSEVNVDFILLAGYLK 170 (294)
Q Consensus 149 ------~~l~~~L~~~~~DliV~agy~~ 170 (294)
..+.+..++.+.|.++...+..
T Consensus 80 ~r~~r~~~l~~~a~~~~~~~i~~Gh~~d 107 (185)
T cd01992 80 AREARYDFFAEIAKEHGADVLLTAHHAD 107 (185)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCcH
Confidence 2344556678889888766544
No 37
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=72.73 E-value=9.8 Score=37.23 Aligned_cols=92 Identities=24% Similarity=0.257 Sum_probs=60.5
Q ss_pred CceeEEEEEeCCc-hHHHHHHHHHHcCCCCceEEEEecCCCC------C-------ccHHHHHhCCCCEEEcCCCC-C--
Q 022631 79 KKKNLAVFVSGGG-SNFRSIHAACLAGSVYGDVVVLVTNKPD------C-------GGAEYARDNSIPVILFPKTK-D-- 141 (294)
Q Consensus 79 ~~~rIaVl~SG~g-s~l~~ll~~~~~~~~~~eI~~Vvt~~~~------~-------~~~~~A~~~gIP~~~~~~~~-~-- 141 (294)
+++||+|..|||= |...+.+.. .+ ..+|.+|....-+ | .+...|.+.|||+..++-.+ +
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk-~Q---GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~ 77 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLK-EQ---GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWN 77 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHH-Hc---CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHH
Confidence 4789999999954 444443332 12 3578887653311 2 25689999999999886321 1
Q ss_pred --------------CC-------CCCChhHHHHHHHhcCCcEEEEeccccccCh
Q 022631 142 --------------EP-------NGLSPNDLVAALSEVNVDFILLAGYLKLIPM 174 (294)
Q Consensus 142 --------------~~-------~~~~d~~l~~~L~~~~~DliV~agy~~ilp~ 174 (294)
+| +.+.-..+++.+.+++.|++..-.|-++-+.
T Consensus 78 ~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~ 131 (356)
T COG0482 78 KVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQRED 131 (356)
T ss_pred HHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecC
Confidence 11 1233456778888899999999999887763
No 38
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=72.73 E-value=27 Score=29.97 Aligned_cols=88 Identities=13% Similarity=0.076 Sum_probs=48.2
Q ss_pred eEEEEEeCCchHH--HHHHHHHHcCCCCceEEEEecCCCC--------CccHHHHHhCCCCEEEcCCCCCC--C-CCCC-
Q 022631 82 NLAVFVSGGGSNF--RSIHAACLAGSVYGDVVVLVTNKPD--------CGGAEYARDNSIPVILFPKTKDE--P-NGLS- 147 (294)
Q Consensus 82 rIaVl~SG~gs~l--~~ll~~~~~~~~~~eI~~Vvt~~~~--------~~~~~~A~~~gIP~~~~~~~~~~--~-~~~~- 147 (294)
||+|.+|||--.+ ..++...... ...++.+|..+..- ..+.++|+++|||+..++-.... . ...+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~-~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 79 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK-LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKGKKKNL 79 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccccCCCH
Confidence 6889999976433 2333222111 22356666655321 12468999999998876532110 0 0001
Q ss_pred h--------hHHHHHHHhcCCcEEEEecccc
Q 022631 148 P--------NDLVAALSEVNVDFILLAGYLK 170 (294)
Q Consensus 148 d--------~~l~~~L~~~~~DliV~agy~~ 170 (294)
+ ..+.+..++.+.++++......
T Consensus 80 ~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 80 EEAAREARYDFFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCccH
Confidence 1 2344556677888888766544
No 39
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=72.09 E-value=12 Score=36.05 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=46.0
Q ss_pred eeEEEEEeCCc-hHHH--HHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCC-CC----------
Q 022631 81 KNLAVFVSGGG-SNFR--SIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPN-GL---------- 146 (294)
Q Consensus 81 ~rIaVl~SG~g-s~l~--~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~-~~---------- 146 (294)
+||.+-+.|+| +.+- ++.+.++.. .++|..|-++.. . ..++..++|++++.++....... .+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~--g~~v~~vg~~~~-~-e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 77 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED--NWDISYIGSHQG-I-EKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVM 77 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC--CCEEEEEECCCc-c-ccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHH
Confidence 45555544433 3343 445555432 467777765432 1 12455667999887764332111 11
Q ss_pred -ChhHHHHHHHhcCCcEEEEec
Q 022631 147 -SPNDLVAALSEVNVDFILLAG 167 (294)
Q Consensus 147 -~d~~l~~~L~~~~~DliV~ag 167 (294)
..-.....+++++||+++..|
T Consensus 78 ~~~~~~~~i~~~~kPdvvi~~G 99 (352)
T PRK12446 78 KGVMDAYVRIRKLKPDVIFSKG 99 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEecC
Confidence 111344668899999999877
No 40
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=68.19 E-value=12 Score=36.40 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=30.0
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCE
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPV 133 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~ 133 (294)
+.||+|+.+|-|.. -+.+...-...+++++|+...++ ...++|+++|+|.
T Consensus 3 ~~rVgViG~~~G~~---h~~al~~~~~~~eLvaV~d~~~e-rA~~~A~~~gi~~ 52 (343)
T TIGR01761 3 VQSVVVCGTRFGQF---YLAAFAAAPERFELAGILAQGSE-RSRALAHRLGVPL 52 (343)
T ss_pred CcEEEEEeHHHHHH---HHHHHHhCCCCcEEEEEEcCCHH-HHHHHHHHhCCCc
Confidence 67899885532222 22233221114788888775433 4568999999984
No 41
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=68.11 E-value=15 Score=34.25 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=41.7
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCC-ceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVY-GDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE 157 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~-~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~ 157 (294)
++.|++|+..| +-.-+..+....... + .++++|+...+ ....++|+++|++ ..+ .++-+.|+.
T Consensus 2 ~~irvgiiG~G-~~~~~~~~~~~~~~~-~~~~~vav~d~~~-~~a~~~a~~~~~~-~~~------------~~~~~ll~~ 65 (342)
T COG0673 2 KMIRVGIIGAG-GIAGKAHLPALAALG-GGLELVAVVDRDP-ERAEAFAEEFGIA-KAY------------TDLEELLAD 65 (342)
T ss_pred CeeEEEEEccc-HHHHHHhHHHHHhCC-CceEEEEEecCCH-HHHHHHHHHcCCC-ccc------------CCHHHHhcC
Confidence 47889999554 121122333333221 2 46777765433 3467899999999 221 123355666
Q ss_pred cCCcEEEEec
Q 022631 158 VNVDFILLAG 167 (294)
Q Consensus 158 ~~~DliV~ag 167 (294)
-++|+++++.
T Consensus 66 ~~iD~V~Iat 75 (342)
T COG0673 66 PDIDAVYIAT 75 (342)
T ss_pred CCCCEEEEcC
Confidence 6789988764
No 42
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=67.41 E-value=36 Score=33.34 Aligned_cols=89 Identities=19% Similarity=0.099 Sum_probs=54.4
Q ss_pred ceeEEEEEeCCc-hHHHHHHHHHHcCCCCceEEEEecCCCC---CccHHHHHhCCCCEEEcCCCC-C-------------
Q 022631 80 KKNLAVFVSGGG-SNFRSIHAACLAGSVYGDVVVLVTNKPD---CGGAEYARDNSIPVILFPKTK-D------------- 141 (294)
Q Consensus 80 ~~rIaVl~SG~g-s~l~~ll~~~~~~~~~~eI~~Vvt~~~~---~~~~~~A~~~gIP~~~~~~~~-~------------- 141 (294)
..||+|.+|||- |.+.+.+.+ .. ..++.+|..+..+ ..+.++|+++|||++.++-.. +
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~-~~---G~eV~av~~~~~~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~ 80 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQ-EQ---GYEIVGVTMRVWGDEPQDARELAARMGIEHYVADERVPFKDTIVKNFIDEYR 80 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHH-Hc---CCcEEEEEecCcchhHHHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHH
Confidence 579999999965 333222211 22 3467777665321 235689999999998876321 0
Q ss_pred ---CCC-------CCChhHHHHHHHhcCCcEEEEecccccc
Q 022631 142 ---EPN-------GLSPNDLVAALSEVNVDFILLAGYLKLI 172 (294)
Q Consensus 142 ---~~~-------~~~d~~l~~~L~~~~~DliV~agy~~il 172 (294)
.+. .+.-..+.+..++.+.|++....|.++-
T Consensus 81 ~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~ 121 (362)
T PRK14664 81 QGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLE 121 (362)
T ss_pred cCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccc
Confidence 000 0112245666678899999998888763
No 43
>PLN02342 ornithine carbamoyltransferase
Probab=67.25 E-value=33 Score=33.44 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=20.6
Q ss_pred cccChhHHhcCCCCEEEEcCCCCCCCCC
Q 022631 170 KLIPMELIRAYPRSIVNIHPSLLPAFGG 197 (294)
Q Consensus 170 ~ilp~~~l~~~~~g~iNiHPSlLP~yRG 197 (294)
+.|..++++..+..++-+|| ||.+||
T Consensus 287 y~vt~ell~~ak~~aivMHp--LP~~rg 312 (348)
T PLN02342 287 FQVNEALMKLAGPQAYFMHC--LPAERG 312 (348)
T ss_pred CccCHHHHhccCCCcEEeCC--CCcCCC
Confidence 45777788777777888999 788887
No 44
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=65.73 E-value=32 Score=33.50 Aligned_cols=106 Identities=19% Similarity=0.159 Sum_probs=56.8
Q ss_pred eeEEEEEeCCc-hHH--HHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCC----------
Q 022631 81 KNLAVFVSGGG-SNF--RSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLS---------- 147 (294)
Q Consensus 81 ~rIaVl~SG~g-s~l--~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~---------- 147 (294)
++|++.++|+| +.+ .++.+.+...... ++...-+.. .. ....-.+.+++++.++..........
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~-~v~~~~~~~-~~-e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWE-QVIVLGTGD-GL-EAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLL 77 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCcc-EEEEecccc-cc-eeeeccccCceEEEEecccccccCcHHHHHHHHHHH
Confidence 35677777754 333 4555555544322 343333322 11 12345566889888875543221111
Q ss_pred --hhHHHHHHHhcCCcEEEEeccccccChhHHhcCCCC-EEEEcCC
Q 022631 148 --PNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRS-IVNIHPS 190 (294)
Q Consensus 148 --d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g-~iNiHPS 190 (294)
-.+..+.|++++||+++..|..--+|.-+.. ...+ =+-+|-.
T Consensus 78 ~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa-~~~~iPv~ihEq 122 (357)
T COG0707 78 KGVLQARKILKKLKPDVVIGTGGYVSGPVGIAA-KLLGIPVIIHEQ 122 (357)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCccccHHHHHH-HhCCCCEEEEec
Confidence 1234567889999999998765666654444 3333 2444544
No 45
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=64.51 E-value=36 Score=33.23 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=51.6
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC---C-----ccHHHHHhCCCCEEEcCCCC-----------
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD---C-----GGAEYARDNSIPVILFPKTK----------- 140 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~---~-----~~~~~A~~~gIP~~~~~~~~----------- 140 (294)
..||+|.+|||--..-++....+.| .++.+|..+... . .+.++|+++|||++.++-..
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~~G---~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~ 81 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLEAG---YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKVFRKQIIDYFI 81 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHcC---CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhh
Confidence 4689999999652222222212233 467777654211 1 24689999999998876421
Q ss_pred ------CCCC-------CCChhHHHHHHHhcCCcEEEEeccccc
Q 022631 141 ------DEPN-------GLSPNDLVAALSEVNVDFILLAGYLKL 171 (294)
Q Consensus 141 ------~~~~-------~~~d~~l~~~L~~~~~DliV~agy~~i 171 (294)
..+. .+.-..+.+..++.+.|.|+...|.++
T Consensus 82 ~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~ 125 (360)
T PRK14665 82 DEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRK 125 (360)
T ss_pred hHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccce
Confidence 0010 011123445556789999999888765
No 46
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=64.16 E-value=35 Score=32.98 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=51.2
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC----------------CccHHHHHhCCCCEEEcCCCC----
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD----------------CGGAEYARDNSIPVILFPKTK---- 140 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~----------------~~~~~~A~~~gIP~~~~~~~~---- 140 (294)
+||+|.+|||--..-.+......| .++.++..+... ..+.++|+++|||++.++-..
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~G---~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~ 77 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQG---YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWD 77 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHcC---CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHH
Confidence 489999999653322222222222 456666554310 125689999999998876321
Q ss_pred -------------CCCC-------CCChhHHHHHHHhcCCcEEEEecccccc
Q 022631 141 -------------DEPN-------GLSPNDLVAALSEVNVDFILLAGYLKLI 172 (294)
Q Consensus 141 -------------~~~~-------~~~d~~l~~~L~~~~~DliV~agy~~il 172 (294)
..+. .+.-..+.+..++.++|.++...|.+..
T Consensus 78 ~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~ 129 (346)
T PRK00143 78 RVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIR 129 (346)
T ss_pred HHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeecccc
Confidence 0010 0111234556677899999888887664
No 47
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=64.10 E-value=23 Score=35.06 Aligned_cols=56 Identities=18% Similarity=0.011 Sum_probs=33.9
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcC
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFP 137 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~ 137 (294)
+||+||.|. ||--.+-++-++...-.++|+++.+++.-.-+.+.+++++-.++.+.
T Consensus 2 k~i~IlGsT-GSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~ 57 (389)
T TIGR00243 2 KQIVILGST-GSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAID 57 (389)
T ss_pred ceEEEEecC-hHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEc
Confidence 688888665 44444444433332225788888776543345677888887766553
No 48
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=63.30 E-value=52 Score=31.75 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=20.3
Q ss_pred cccChhHHhcCCC-CEEEEcCCCCCCCCCC
Q 022631 170 KLIPMELIRAYPR-SIVNIHPSLLPAFGGK 198 (294)
Q Consensus 170 ~ilp~~~l~~~~~-g~iNiHPSlLP~yRG~ 198 (294)
+.|.+++++..+. .++-+|| ||.+||.
T Consensus 253 y~v~~e~l~~a~~~~~ivmHp--lP~~r~~ 280 (332)
T PRK04284 253 YQVNKEMMKKTGNPNAIFEHC--LPSFHDL 280 (332)
T ss_pred CcCCHHHHhhcCCCCcEEECC--CCCCCCc
Confidence 3567788887753 7889998 6888875
No 49
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=62.98 E-value=27 Score=31.39 Aligned_cols=76 Identities=24% Similarity=0.230 Sum_probs=41.0
Q ss_pred EEEeCCchHHHHHHHHHHcCCCCceEEEEec-CCCC--------C---ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHH
Q 022631 85 VFVSGGGSNFRSIHAACLAGSVYGDVVVLVT-NKPD--------C---GGAEYARDNSIPVILFPKTKDEPNGLSPNDLV 152 (294)
Q Consensus 85 Vl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt-~~~~--------~---~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~ 152 (294)
|++|||--..-++..+...| .+|+++++ ...+ . .+...|+..|||+..++.... .+...+.+.
T Consensus 2 vl~SGGkDS~~al~~a~~~G---~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~--~~~~~~~l~ 76 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEEG---HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGE--KEKEVEDLK 76 (218)
T ss_pred eeecCcHHHHHHHHHHHHcC---CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCC--ChHHHHHHH
Confidence 67788654444455555544 46754444 2221 0 135789999999887764311 111223344
Q ss_pred HHHHh---cCCcEEEE
Q 022631 153 AALSE---VNVDFILL 165 (294)
Q Consensus 153 ~~L~~---~~~DliV~ 165 (294)
+.|.+ .+++.++.
T Consensus 77 ~~l~~~~~~g~~~vv~ 92 (218)
T TIGR03679 77 GALKELKREGVEGIVT 92 (218)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 44433 37887763
No 50
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=62.44 E-value=45 Score=31.22 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=46.3
Q ss_pred eeEEEEEeCCchHHH---HHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCC-----------
Q 022631 81 KNLAVFVSGGGSNFR---SIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGL----------- 146 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~---~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~----------- 146 (294)
+||.+++.|.|.... .+...+... .+++.++ +.... ...+..++.|++++.++.........
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~--g~ev~vv-~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR--GWEVLYL-GTARG-MEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLL 77 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC--CCEEEEE-ECCCc-hhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHH
Confidence 677777655554443 455554432 3566554 43322 12344555799988876422110000
Q ss_pred -ChhHHHHHHHhcCCcEEEEeccc
Q 022631 147 -SPNDLVAALSEVNVDFILLAGYL 169 (294)
Q Consensus 147 -~d~~l~~~L~~~~~DliV~agy~ 169 (294)
.-..+.+.+++.+||++++.++.
T Consensus 78 ~~~~~~~~~ik~~~pDvv~~~~~~ 101 (357)
T PRK00726 78 KGVLQARKILKRFKPDVVVGFGGY 101 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCc
Confidence 01133556788899999999743
No 51
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=61.92 E-value=19 Score=33.02 Aligned_cols=89 Identities=17% Similarity=0.189 Sum_probs=50.7
Q ss_pred ceeEEEEEeCCchHH--HHHHHHHHc-CCCCceEEEEecCCCC-----CccHHHHHhCCCCEEEcCCCCCC------CCC
Q 022631 80 KKNLAVFVSGGGSNF--RSIHAACLA-GSVYGDVVVLVTNKPD-----CGGAEYARDNSIPVILFPKTKDE------PNG 145 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l--~~ll~~~~~-~~~~~eI~~Vvt~~~~-----~~~~~~A~~~gIP~~~~~~~~~~------~~~ 145 (294)
..||+|.+|||.-.+ ..++..... ....+++.+|-.+... ..+.++|+++|||++++....+. ++.
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~ 108 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEYLESLGVPYHIEEQDTYSIVKEKIPEG 108 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHHHHHhCCCEEEEEecchhhhhhhhccC
Confidence 468999999976433 333333222 2234578777665421 12468999999998876421110 000
Q ss_pred C---------ChhHHHHHHHhcCCcEEEEecc
Q 022631 146 L---------SPNDLVAALSEVNVDFILLAGY 168 (294)
Q Consensus 146 ~---------~d~~l~~~L~~~~~DliV~agy 168 (294)
. .-..+.+..++.++|.++++..
T Consensus 109 ~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~ 140 (258)
T PRK10696 109 KTTCSLCSRLRRGILYRTARELGATKIALGHH 140 (258)
T ss_pred CChhHHHHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 0 0123445566789998887654
No 52
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=60.34 E-value=23 Score=26.76 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=42.2
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCC-CCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCC
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGS-VYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNV 160 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~-~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~ 160 (294)
||+|+ |.|.--.+|...+.... .+.+|.. ++++......+++++.++.+...+ .. +.++ +.
T Consensus 1 kI~iI--G~G~mg~al~~~l~~~g~~~~~v~~-~~~r~~~~~~~~~~~~~~~~~~~~----------~~---~~~~--~a 62 (96)
T PF03807_consen 1 KIGII--GAGNMGSALARGLLASGIKPHEVII-VSSRSPEKAAELAKEYGVQATADD----------NE---EAAQ--EA 62 (96)
T ss_dssp EEEEE--STSHHHHHHHHHHHHTTS-GGEEEE-EEESSHHHHHHHHHHCTTEEESEE----------HH---HHHH--HT
T ss_pred CEEEE--CCCHHHHHHHHHHHHCCCCceeEEe-eccCcHHHHHHHHHhhccccccCC----------hH---Hhhc--cC
Confidence 67877 66666677777765443 2345543 434444445678888886655311 12 2333 68
Q ss_pred cEEEEeccccccCh
Q 022631 161 DFILLAGYLKLIPM 174 (294)
Q Consensus 161 DliV~agy~~ilp~ 174 (294)
|++|++--...+++
T Consensus 63 dvvilav~p~~~~~ 76 (96)
T PF03807_consen 63 DVVILAVKPQQLPE 76 (96)
T ss_dssp SEEEE-S-GGGHHH
T ss_pred CEEEEEECHHHHHH
Confidence 89988755554443
No 53
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=59.73 E-value=44 Score=32.97 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCCCCceEEEEecCCCC--C----ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEe
Q 022631 93 NFRSIHAACLAGSVYGDVVVLVTNKPD--C----GGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLA 166 (294)
Q Consensus 93 ~l~~ll~~~~~~~~~~eI~~Vvt~~~~--~----~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~a 166 (294)
.++.+.+.+... ..+=++|||++.- . .+.+..++.||.+.+++...-+|....-++..+.++++++|.||..
T Consensus 16 ~l~~l~~~~~~~--g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIal 93 (377)
T COG1454 16 SLKELGEEVKRL--GAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIAL 93 (377)
T ss_pred hHHHHHHHHHhc--CCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 344444544431 1234788998742 1 3467788889999988876545543333456688899999999999
Q ss_pred cccccc
Q 022631 167 GYLKLI 172 (294)
Q Consensus 167 gy~~il 172 (294)
|=+..+
T Consensus 94 GGGS~~ 99 (377)
T COG1454 94 GGGSVI 99 (377)
T ss_pred CCccHH
Confidence 877655
No 54
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=59.17 E-value=54 Score=33.21 Aligned_cols=57 Identities=16% Similarity=-0.005 Sum_probs=34.5
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFP 137 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~ 137 (294)
.+||+||.|. ||--..-++-++...-.++|+++..+..-.-..+.|+++.-.++.+.
T Consensus 57 ~KkI~ILGST-GSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~ 113 (454)
T PLN02696 57 PKPISLLGST-GSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVR 113 (454)
T ss_pred ccEEEEecCC-cHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEc
Confidence 5899999663 44433333333332225788888776533335677888887766653
No 55
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=58.25 E-value=50 Score=32.59 Aligned_cols=70 Identities=24% Similarity=0.335 Sum_probs=42.5
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcC-CCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAG-SVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV 158 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~-~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~ 158 (294)
.+|+.|+ |.|...+.+++.+.+. ....++++++.+.++.. ..-.|+|+.- +.+++.+.+++.
T Consensus 125 ~~rvLIv--Gag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~----~~i~g~pVlg-----------~~~~l~~~i~~~ 187 (445)
T TIGR03025 125 LRRVLIV--GTGEAARELAAALSRNPDLGYRVVGFVDDRPSDR----VEVAGLPVLG-----------KLDDLVELVRAH 187 (445)
T ss_pred CCcEEEE--ECCHHHHHHHHHHhhCccCCeEEEEEEeCCcccc----cccCCCcccC-----------CHHHHHHHHHhC
Confidence 4555555 7778888888877543 34578999887543321 2235666541 124566666777
Q ss_pred CCcEEEEe
Q 022631 159 NVDFILLA 166 (294)
Q Consensus 159 ~~DliV~a 166 (294)
++|-++++
T Consensus 188 ~id~ViIa 195 (445)
T TIGR03025 188 RVDEVIIA 195 (445)
T ss_pred CCCEEEEe
Confidence 77776665
No 56
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=58.03 E-value=16 Score=35.69 Aligned_cols=102 Identities=20% Similarity=0.186 Sum_probs=55.8
Q ss_pred eeEEEEEeCCc-hHHHHHHHHHHcCCCCceEEEEecCCCCC---------------ccHHHHHhCCCCEEEcCCCC-C--
Q 022631 81 KNLAVFVSGGG-SNFRSIHAACLAGSVYGDVVVLVTNKPDC---------------GGAEYARDNSIPVILFPKTK-D-- 141 (294)
Q Consensus 81 ~rIaVl~SG~g-s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~---------------~~~~~A~~~gIP~~~~~~~~-~-- 141 (294)
+||+|-+|||= |...+.+.. .+| ++|.+|....-+. .+...|+.+|||++.++-.. |
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk-~~G---~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~ 76 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLK-EQG---YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWE 76 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHH-HCT----EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHH
T ss_pred CeEEEEccCCHHHHHHHHHHH-hhc---ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 58999999954 555554443 343 5788776633211 14688999999999886432 1
Q ss_pred --------------CC-------CCCChhHHHHHHHh-cCCcEEEEeccccccChhHHhcCCCCEEEEcCCC
Q 022631 142 --------------EP-------NGLSPNDLVAALSE-VNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSL 191 (294)
Q Consensus 142 --------------~~-------~~~~d~~l~~~L~~-~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSl 191 (294)
+| +.+.-..+++...+ +++|.+..-.|-++...+ ..+..-++-+.
T Consensus 77 ~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~-----~~~~~~L~r~~ 143 (356)
T PF03054_consen 77 EVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDE-----KNGRYRLLRGA 143 (356)
T ss_dssp HTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES------TTEEEEEE-S
T ss_pred HHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeec-----cCCceEEEecC
Confidence 11 12344577888888 999999998898887654 23444554443
No 57
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=57.24 E-value=1.1e+02 Score=30.19 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=42.2
Q ss_pred CCceeEEEEEe--------CCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCC---C--CC-
Q 022631 78 IKKKNLAVFVS--------GGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTK---D--EP- 143 (294)
Q Consensus 78 ~~~~rIaVl~S--------G~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~---~--~~- 143 (294)
.+++||++|+- |....+..+.+.+.+. .++|..+.++..... ...|+.++...... + .+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~--G~eV~vlt~~~~~~~-----~~~g~~v~~~~~~~~~~~~~~~~ 128 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREM--GDEVLVVTTDEGVPQ-----EFHGAKVIGSWSFPCPFYQKVPL 128 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHC--CCeEEEEecCCCCCc-----cccCceeeccCCcCCccCCCcee
Confidence 56899998852 2234566666766543 356655544432211 11233332211000 0 00
Q ss_pred CCCChhHHHHHHHhcCCcEEEEec
Q 022631 144 NGLSPNDLVAALSEVNVDFILLAG 167 (294)
Q Consensus 144 ~~~~d~~l~~~L~~~~~DliV~ag 167 (294)
.-.....+.+.+++.++|+|.+..
T Consensus 129 ~~~~~~~l~~~i~~~kpDiIh~~~ 152 (465)
T PLN02871 129 SLALSPRIISEVARFKPDLIHASS 152 (465)
T ss_pred eccCCHHHHHHHHhCCCCEEEECC
Confidence 001123677888999999998654
No 58
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=57.21 E-value=62 Score=25.91 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=25.6
Q ss_pred cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh
Q 022631 122 GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE 157 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~ 157 (294)
+.+.|.+.|+|+..++...|.|-..+-+.+++.+++
T Consensus 67 i~~~~~~~~ipv~~I~~~~Y~~~~~~~~~~~~~~~~ 102 (104)
T PRK09590 67 FEEAGAKVGKPVVQIPPQAYIPIPMGIEKMAKLILE 102 (104)
T ss_pred HHHHhhhcCCCEEEeCHHHcCCCccCHHHHHHHHHh
Confidence 467788899999999877776544455666666654
No 59
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=56.05 E-value=26 Score=29.42 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=43.2
Q ss_pred ceeEEEEEeCCc---hHHHHHHHHHHcCCCCceEEEE---ecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHH
Q 022631 80 KKNLAVFVSGGG---SNFRSIHAACLAGSVYGDVVVL---VTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVA 153 (294)
Q Consensus 80 ~~rIaVl~SG~g---s~l~~ll~~~~~~~~~~eI~~V---vt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~ 153 (294)
++||.+++.|+. .-.++|+...........=.++ ...+.+....+.++++||++-... ++.+.+..+
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~~~-----~k~i~~~~~-- 74 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISGHR-----SKQLTEEDF-- 74 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCCcc-----CccCchhhh--
Confidence 678999988843 3345555554332221111222 233344556788999999976321 222322221
Q ss_pred HHHhcCCcEEEEecc
Q 022631 154 ALSEVNVDFILLAGY 168 (294)
Q Consensus 154 ~L~~~~~DliV~agy 168 (294)
..+|+||...-
T Consensus 75 ----~~~DlIitmd~ 85 (139)
T COG0394 75 ----DEFDLIITMDE 85 (139)
T ss_pred ----hhCCEEEEeCh
Confidence 37999998764
No 60
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=55.66 E-value=1.3e+02 Score=28.02 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=27.2
Q ss_pred HHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCC
Q 022631 151 LVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGG 197 (294)
Q Consensus 151 l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG 197 (294)
..+.+++++||++|+- + .....-......-.++.+|...--.|.|
T Consensus 85 ~~~~l~~~~pDlVi~d-~-~~~~~~aA~~~~iP~i~i~~q~~~~~~~ 129 (321)
T TIGR00661 85 EINIIREYNPDLIISD-F-EYSTVVAAKLLKIPVICISNQNYTRYPL 129 (321)
T ss_pred HHHHHHhcCCCEEEEC-C-chHHHHHHHhcCCCEEEEecchhhcCCc
Confidence 3577888999999986 3 2233333333444678777655444444
No 61
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=55.26 E-value=1e+02 Score=29.93 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=19.5
Q ss_pred cccChhHHhcCCCCEEEEcCCCCCCCCC
Q 022631 170 KLIPMELIRAYPRSIVNIHPSLLPAFGG 197 (294)
Q Consensus 170 ~ilp~~~l~~~~~g~iNiHPSlLP~yRG 197 (294)
+.|..++++..+.+++-+|| ||.+||
T Consensus 252 y~v~~ell~~a~~~~ivmHp--LP~~Rg 277 (338)
T PRK02255 252 YQVTPELMAKAGPHAKFMHC--LPATRG 277 (338)
T ss_pred ceECHHHHhccCCCCEEeCC--CCCcCC
Confidence 45677777777777888898 577777
No 62
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=54.89 E-value=40 Score=28.97 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=42.5
Q ss_pred eEEEEEeCCchHH--HHHHHHHHcCCCCceEEEEecCCC---C-----CccHHHHHhCCCCEEEcCCCCC-CCCCCCh--
Q 022631 82 NLAVFVSGGGSNF--RSIHAACLAGSVYGDVVVLVTNKP---D-----CGGAEYARDNSIPVILFPKTKD-EPNGLSP-- 148 (294)
Q Consensus 82 rIaVl~SG~gs~l--~~ll~~~~~~~~~~eI~~Vvt~~~---~-----~~~~~~A~~~gIP~~~~~~~~~-~~~~~~d-- 148 (294)
||+|-+|||.-.+ -.++.... ...+.++.+|..|.. + ..+.++|+++|||++...-... .+....+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~-~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~ 79 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELR-RRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDRKKGSNIEEC 79 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHH-TTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHCCTTSTCHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHH-HhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeeecccCCHHHH
Confidence 6889999866333 33333332 233457777776653 1 1357899999999887653210 0111111
Q ss_pred ------hHHHHHHHhcCCcEEEEecc
Q 022631 149 ------NDLVAALSEVNVDFILLAGY 168 (294)
Q Consensus 149 ------~~l~~~L~~~~~DliV~agy 168 (294)
+.+.+...+.+.+.++++.-
T Consensus 80 aR~~Ry~~l~~~a~~~g~~~i~~GHh 105 (182)
T PF01171_consen 80 ARELRYQFLREIAKEEGCNKIALGHH 105 (182)
T ss_dssp HHHHHHHHHHHHHHTTT-CEEE---B
T ss_pred HHHHHHHHHHHhhhcccccceeecCc
Confidence 13345556788898887654
No 63
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=54.43 E-value=43 Score=29.79 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=24.9
Q ss_pred CceEEEEecCCCCC----ccHHHHHhCCCCEEEcCC
Q 022631 107 YGDVVVLVTNKPDC----GGAEYARDNSIPVILFPK 138 (294)
Q Consensus 107 ~~eI~~Vvt~~~~~----~~~~~A~~~gIP~~~~~~ 138 (294)
..+++.+++...+. ...+.|++.|+|++.+..
T Consensus 109 ~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~ 144 (196)
T PRK10886 109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTG 144 (196)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 46899999976543 356899999999988764
No 64
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=53.22 E-value=1.4e+02 Score=28.88 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=15.8
Q ss_pred ccChhHHhcCCCCEEEEcCCCCCCCCCC
Q 022631 171 LIPMELIRAYPRSIVNIHPSLLPAFGGK 198 (294)
Q Consensus 171 ilp~~~l~~~~~g~iNiHPSlLP~yRG~ 198 (294)
.|.+++++..+ .++-+|| ||.+||.
T Consensus 276 ~v~~~ll~~a~-~~i~mHc--LP~~Rg~ 300 (335)
T PRK04523 276 IVDERKMALTN-NGVFSHC--LPLRRNV 300 (335)
T ss_pred cCCHHHHhCCC-CCEEECC--CCCCCCC
Confidence 35566666554 5677787 4677773
No 65
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=52.88 E-value=81 Score=27.95 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=45.7
Q ss_pred ceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccChhHHhcCC
Q 022631 108 GDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYP 181 (294)
Q Consensus 108 ~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~ 181 (294)
.+|.++++ +.....++++++.|++++..+... +.+++...++..+.=++|+.+=.-++.+.+++..-
T Consensus 42 d~i~v~is-p~tp~t~~~~~~~gv~vi~tpG~G------Yv~Dl~~al~~l~~P~lvvsaDLp~l~~~~i~~vi 108 (177)
T COG2266 42 DEIIVAIS-PHTPKTKEYLESVGVKVIETPGEG------YVEDLRFALESLGTPILVVSADLPFLNPSIIDSVI 108 (177)
T ss_pred CcEEEEeC-CCCHhHHHHHHhcCceEEEcCCCC------hHHHHHHHHHhcCCceEEEecccccCCHHHHHHHH
Confidence 45655554 444457789999999999865433 56788888888884444444445778888887654
No 66
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=52.21 E-value=46 Score=30.70 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=26.0
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCE
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPV 133 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~ 133 (294)
+||+|+.. |.--+.+...+.......++++|+. +......+++++.|++.
T Consensus 2 mrIgIIG~--G~iG~~ia~~l~~~~~~~elv~v~d-~~~~~a~~~a~~~~~~~ 51 (265)
T PRK13304 2 LKIGIVGC--GAIASLITKAILSGRINAELYAFYD-RNLEKAENLASKTGAKA 51 (265)
T ss_pred CEEEEECc--cHHHHHHHHHHHcCCCCeEEEEEEC-CCHHHHHHHHHhcCCee
Confidence 57888844 3333445555544322456766654 33222345566666553
No 67
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=52.15 E-value=1e+02 Score=23.88 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=29.9
Q ss_pred HHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEecccc
Q 022631 123 AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLK 170 (294)
Q Consensus 123 ~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ 170 (294)
.+.+++.++++..+.... -.+.+.+..++.++|++|+...++
T Consensus 55 ~~~~~~~~~~~~~~~~~~------~~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 55 LRLAEELGAEVVTLPGDD------VAEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHcCCEEEEEeCCc------HHHHHHHHHHHcCCCEEEeCCCCC
Confidence 467888888876543211 136788889999999999877644
No 68
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=51.64 E-value=1.2e+02 Score=26.83 Aligned_cols=97 Identities=16% Similarity=0.074 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccC
Q 022631 94 FRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIP 173 (294)
Q Consensus 94 l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp 173 (294)
+..++..+... .+++..+.... ...........||+++.++.......-..-..+.+.+++.++|++++..+...+.
T Consensus 18 ~~~l~~~l~~~--~~~v~~~~~~~-~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~div~~~~~~~~~~ 94 (365)
T cd03807 18 LVRLLKGLDRD--RFEHVVISLTD-RGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLRPDVVHTWMYHADLY 94 (365)
T ss_pred HHHHHHHhhhc--cceEEEEecCc-chhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhCCCEEEeccccccHH
Confidence 45566665332 23454444332 2223344455799988776432101111123566778889999999876543222
Q ss_pred hhHHhcC---CCCEEEEcCCCCC
Q 022631 174 MELIRAY---PRSIVNIHPSLLP 193 (294)
Q Consensus 174 ~~~l~~~---~~g~iNiHPSlLP 193 (294)
..+.... ..-++.+|.....
T Consensus 95 ~~~~~~~~~~~~~i~~~~~~~~~ 117 (365)
T cd03807 95 GGLAARLAGVPPVIWGIRHSDLD 117 (365)
T ss_pred HHHHHHhcCCCcEEEEecCCccc
Confidence 2222222 2246778887755
No 69
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=51.48 E-value=53 Score=30.50 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=28.1
Q ss_pred CCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCC
Q 022631 78 IKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIP 132 (294)
Q Consensus 78 ~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP 132 (294)
.++.||+|+..| .--+.+...+..+....++++|....++ ...+++++.|++
T Consensus 4 m~~irIGIIG~G--~IG~~~a~~L~~~~~~~el~aV~dr~~~-~a~~~a~~~g~~ 55 (271)
T PRK13302 4 RPELRVAIAGLG--AIGKAIAQALDRGLPGLTLSAVAVRDPQ-RHADFIWGLRRP 55 (271)
T ss_pred CCeeEEEEECcc--HHHHHHHHHHHhcCCCeEEEEEECCCHH-HHHHHHHhcCCC
Confidence 446889998544 3333444444432224567666543322 345677777754
No 70
>PHA00771 head assembly protein
Probab=51.05 E-value=16 Score=30.79 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=39.6
Q ss_pred EEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEE
Q 022631 184 IVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQR 237 (294)
Q Consensus 184 ~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~ 237 (294)
++-.|+=.+|.+||...-+-..+|.=|+. -...-+.+-++-+..--|.+|.|-
T Consensus 62 ~~ecHa~y~P~fRG~ya~~~r~F~kwlL~-Nt~f~~vit~vp~kt~~G~vic~l 114 (151)
T PHA00771 62 TFDCHAMYLPEIRGFSKEIGLAFWRYILT-NTTVQCVTSFAARKFRHGQMYCAM 114 (151)
T ss_pred EEEEEeeeCccccchhHHHHHHHHHHHhc-CCceeEEEEecccccccchhhhhh
Confidence 89999999999999764333455653444 455667777888899999999875
No 71
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=50.44 E-value=56 Score=26.02 Aligned_cols=55 Identities=29% Similarity=0.364 Sum_probs=35.2
Q ss_pred ceeEEEEEeCCchHHH--HHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCC
Q 022631 80 KKNLAVFVSGGGSNFR--SIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKT 139 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~--~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~ 139 (294)
+.-++|++|.+|.+-+ ..++..++. ...++ ++|+. ....++|.++|++++.++..
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~--g~~iI-~IT~~--~~l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKER--GAKIV-AITSG--GKLLEMAREHGVPVIIIPKG 99 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC--CCEEE-EEeCC--chHHHHHHHcCCcEEECCCC
Confidence 5568999998886543 333333333 34554 44543 24778999999999988653
No 72
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=50.32 E-value=1.5e+02 Score=27.78 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=61.0
Q ss_pred ecCCCCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecC--CCCCc-----cHHHHHhCC----CCEEEcCCCCCC
Q 022631 74 FDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTN--KPDCG-----GAEYARDNS----IPVILFPKTKDE 142 (294)
Q Consensus 74 ~~~~~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~--~~~~~-----~~~~A~~~g----IP~~~~~~~~~~ 142 (294)
+.-+.-.+||||+.|.+|..++.++..+.......++...=+. -.++. .++.+.+.+ +.++++-+..-.
T Consensus 8 ~~lP~~p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 8 KPLPKFPKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred CCCCCCCCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 3345557899999999999999988877654333455443222 22221 235555544 667776554322
Q ss_pred C---CCCChhHHHHHHHhcCCcEEEEeccccccChhHHhc
Q 022631 143 P---NGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRA 179 (294)
Q Consensus 143 ~---~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~ 179 (294)
. -..|++.+.+.+.+...=+|.-+ |+=..-.+++.
T Consensus 88 ~eDL~~FN~e~varai~~~~~PvisaI--GHe~D~ti~D~ 125 (319)
T PF02601_consen 88 IEDLWAFNDEEVARAIAASPIPVISAI--GHETDFTIADF 125 (319)
T ss_pred hHHhcccChHHHHHHHHhCCCCEEEec--CCCCCchHHHH
Confidence 1 13567888888877765544444 44455445543
No 73
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=50.27 E-value=93 Score=28.66 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=42.5
Q ss_pred eEEEEEeCCchHHH---HHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCC------------
Q 022631 82 NLAVFVSGGGSNFR---SIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGL------------ 146 (294)
Q Consensus 82 rIaVl~SG~gs~l~---~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~------------ 146 (294)
||.+-..|.|..+. .+.+++... .++|..+ |.... ...+.....|+++..++.........
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~--G~ev~v~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER--GAEVLFL-GTKRG-LEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLK 76 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC--CCEEEEE-ECCCc-chhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHH
Confidence 34555555555554 455555443 3566544 43222 22233445678877765321110000
Q ss_pred ChhHHHHHHHhcCCcEEEEecc
Q 022631 147 SPNDLVAALSEVNVDFILLAGY 168 (294)
Q Consensus 147 ~d~~l~~~L~~~~~DliV~agy 168 (294)
.-..+.+.+++.+||+|+..+.
T Consensus 77 ~~~~~~~~i~~~~pDvI~~~~~ 98 (350)
T cd03785 77 GVLQARKILKKFKPDVVVGFGG 98 (350)
T ss_pred HHHHHHHHHHhcCCCEEEECCC
Confidence 0123557788899999998653
No 74
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=49.60 E-value=1.2e+02 Score=30.02 Aligned_cols=110 Identities=11% Similarity=0.116 Sum_probs=61.0
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHc-CCCCceEEEEecCCCCC--------------ccHHHHHhCCCCEEEcCCCCCCCC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLA-GSVYGDVVVLVTNKPDC--------------GGAEYARDNSIPVILFPKTKDEPN 144 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~-~~~~~eI~~Vvt~~~~~--------------~~~~~A~~~gIP~~~~~~~~~~~~ 144 (294)
++|+.|+ |.|...+.+.+.+.. +....++++++.+.+.. ...+.++++++..+.+.-....
T Consensus 125 ~rrvlIi--Gag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~~~l~~~i~~~~id~ViIAip~~~-- 200 (456)
T TIGR03022 125 GRPAVII--GAGQNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGADDALRLYARTRYAYVIVAMPGTQ-- 200 (456)
T ss_pred CceEEEE--eCCHHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccChhHHHHHHHhCCCCEEEEecCCcc--
Confidence 4555555 667777777777653 23456888888764321 1234566777874444211100
Q ss_pred CCChhHHHHHHHhcCC-cEEEEeccccccChhHH--hcCCCCEEEEcCCCCC
Q 022631 145 GLSPNDLVAALSEVNV-DFILLAGYLKLIPMELI--RAYPRSIVNIHPSLLP 193 (294)
Q Consensus 145 ~~~d~~l~~~L~~~~~-DliV~agy~~ilp~~~l--~~~~~g~iNiHPSlLP 193 (294)
...-+++++.+++.++ ++.++.....+...+.- ..-...+++++..++.
T Consensus 201 ~~~~~~ll~~l~~~~v~~V~~vP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (456)
T TIGR03022 201 AEDMARLVRKLGALHFRNVLIVPSLFGLPNLWISPRFIGGVLGLRVRNNLLL 252 (456)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCcccccccccceeeeeCCeeEEEEeccccc
Confidence 0112356667777777 77777777665544321 1112346888876543
No 75
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=49.00 E-value=67 Score=29.45 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=33.6
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecC---CCCC---ccHHHHHhCCCCEEEcC
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTN---KPDC---GGAEYARDNSIPVILFP 137 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~---~~~~---~~~~~A~~~gIP~~~~~ 137 (294)
+++|-+|++|||--.--.+..+.+.+ .+|.++-.+ +... ...++|+++|||.+.++
T Consensus 1 ~~~kavvl~SGG~DStt~l~~a~~~~---~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid 62 (222)
T COG0603 1 MMKKAVVLLSGGLDSTTCLAWAKKEG---YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIID 62 (222)
T ss_pred CCceEEEEccCChhHHHHHHHHHhcC---CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEec
Confidence 36788888899653322233333333 356655543 2211 24689999999998876
No 76
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=48.77 E-value=83 Score=30.71 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=43.7
Q ss_pred EEEeCCchH-HHHHHHHHHcCCCCceEEEEecCCCCC-ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcE
Q 022631 85 VFVSGGGSN-FRSIHAACLAGSVYGDVVVLVTNKPDC-GGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDF 162 (294)
Q Consensus 85 Vl~SG~gs~-l~~ll~~~~~~~~~~eI~~Vvt~~~~~-~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dl 162 (294)
+++||+|++ +++-+-.... +++.++|+.+--.. ...+.+++.|..+..++.. --+...-+++.+.|.++.+.+
T Consensus 71 f~isgsGh~g~E~al~N~le---Pgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~--~G~~~~le~i~~~lsqh~p~~ 145 (385)
T KOG2862|consen 71 FVISGSGHSGWEAALVNLLE---PGDNVLVVSTGTWGQRAADCARRYGAEVDVVEAD--IGQAVPLEEITEKLSQHKPKA 145 (385)
T ss_pred EEEecCCcchHHHHHHhhcC---CCCeEEEEEechHHHHHHHHHHhhCceeeEEecC--cccCccHHHHHHHHHhcCCce
Confidence 456676654 3333333222 23444555443221 2457788888888777432 123455677778888888877
Q ss_pred EEEe
Q 022631 163 ILLA 166 (294)
Q Consensus 163 iV~a 166 (294)
++++
T Consensus 146 vfv~ 149 (385)
T KOG2862|consen 146 VFVT 149 (385)
T ss_pred EEEE
Confidence 7765
No 77
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=48.71 E-value=40 Score=26.70 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=19.4
Q ss_pred cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCc
Q 022631 122 GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVD 161 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~D 161 (294)
+.+.|+++|||+.. ++.+++.|.+.+.|
T Consensus 37 II~~Ake~~Vpi~e------------dp~Lv~~L~~lelg 64 (92)
T COG2257 37 IIEKAKEHGVPIQE------------DPLLVELLLKLELG 64 (92)
T ss_pred HHHHHHHcCCCccc------------CHHHHHHHHhcccc
Confidence 34678899999874 46777777665543
No 78
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=48.55 E-value=66 Score=31.17 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=44.6
Q ss_pred eEEEEE---------eCCchHHHHHHHHHHcCCCCceEEEEec-CCCCCcc----HHHHHhCCCCEEEcCCCCCCCCCCC
Q 022631 82 NLAVFV---------SGGGSNFRSIHAACLAGSVYGDVVVLVT-NKPDCGG----AEYARDNSIPVILFPKTKDEPNGLS 147 (294)
Q Consensus 82 rIaVl~---------SG~gs~l~~ll~~~~~~~~~~eI~~Vvt-~~~~~~~----~~~A~~~gIP~~~~~~~~~~~~~~~ 147 (294)
|+.||. +|.|+.+..|..+...|+ ++. ++|+ .+|...+ .....+.|||+..+..
T Consensus 147 ~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~-~~~--V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D--------- 214 (331)
T TIGR00512 147 PLRVLTHCNTGSLATAGYGTALGVIRSAHEKGR-LEH--VYADETRPRLQGARLTAWELVQEGIPATLITD--------- 214 (331)
T ss_pred CceEEeecCCccccccccchHHHHHHHHHHcCC-ceE--EEECCCCchhhHHHHHHHHHHHCCCCEEEEcc---------
Confidence 666776 234566776666665553 333 3444 2343222 2345678999988753
Q ss_pred hhHHHHHHHhcCCcEEEEecccccc
Q 022631 148 PNDLVAALSEVNVDFILLAGYLKLI 172 (294)
Q Consensus 148 d~~l~~~L~~~~~DliV~agy~~il 172 (294)
..+-..+.+.++|.+++. --.++
T Consensus 215 -sav~~~m~~~~vd~VivG-Ad~v~ 237 (331)
T TIGR00512 215 -SMAAHLMKHGEVDAVIVG-ADRIA 237 (331)
T ss_pred -cHHHHHhcccCCCEEEEc-ccEEe
Confidence 345555666689999854 33444
No 79
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=48.40 E-value=34 Score=32.13 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=31.5
Q ss_pred hHHHHHHHhcCCcEEEEeccccccChhH-HhcCCCCEEEEcCCC-CCCC
Q 022631 149 NDLVAALSEVNVDFILLAGYLKLIPMEL-IRAYPRSIVNIHPSL-LPAF 195 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy~~ilp~~~-l~~~~~g~iNiHPSl-LP~y 195 (294)
+++-+.+++.+||++|+.+--+.. .| .+..+.-+|+..+++ ++.|
T Consensus 38 ~~i~~~v~~~~PDviVvi~sdH~~--~f~~d~~p~f~Ig~~~~~~~~~~ 84 (279)
T PRK13365 38 EPVAAWLAEQKADVLVFFYNDHCT--TFFFDLYPTFALGVGERFPVADE 84 (279)
T ss_pred HHHHHHHHHhCCCEEEEEcCchHH--HhccccCCceEEEeccccccccc
Confidence 466778889999999999655542 33 455444578888887 5655
No 80
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=48.36 E-value=1.4e+02 Score=28.44 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=26.2
Q ss_pred CCcEEEEecc-----------------ccccChhHHhcCCCCEEEEcCCCCCCCCCC
Q 022631 159 NVDFILLAGY-----------------LKLIPMELIRAYPRSIVNIHPSLLPAFGGK 198 (294)
Q Consensus 159 ~~DliV~agy-----------------~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~ 198 (294)
+.|++.+-.| .+.|..++++..+.+++-+|| ||.+||.
T Consensus 217 ~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp--lP~~R~~ 271 (304)
T PRK00779 217 GADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC--LPAHRGE 271 (304)
T ss_pred CCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC--CCccCCC
Confidence 6787776543 234666777777777888996 5777773
No 81
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=48.25 E-value=73 Score=31.50 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=40.8
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcC-CCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAG-SVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV 158 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~-~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~ 158 (294)
.+|+.|+ |.|.+.+.+...+... ....++++++.+.+.... .. .|+|+.- +.+++.+.+++.
T Consensus 128 ~~rvLIi--Gag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~---~~-~gvpVlg-----------~~~dl~~~i~~~ 190 (451)
T TIGR03023 128 LRRVLIV--GAGELGRRLAERLARNPELGYRVVGFFDDRPDART---GV-RGVPVLG-----------KLDDLEELIREG 190 (451)
T ss_pred CCcEEEE--eCCHHHHHHHHHHHhCccCCcEEEEEEeCCCcccc---cc-CCCCccC-----------CHHHHHHHHHhc
Confidence 4555555 6777777777776543 345789998876543211 11 4566541 124555666666
Q ss_pred CCcEEEEe
Q 022631 159 NVDFILLA 166 (294)
Q Consensus 159 ~~DliV~a 166 (294)
++|-++++
T Consensus 191 ~vd~ViIA 198 (451)
T TIGR03023 191 EVDEVYIA 198 (451)
T ss_pred CCCEEEEe
Confidence 66666655
No 82
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=48.12 E-value=1e+02 Score=23.78 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=42.2
Q ss_pred EEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEE
Q 022631 85 VFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFIL 164 (294)
Q Consensus 85 Vl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV 164 (294)
|++-|.|..-+.+.+.+..+. .++++|-.++ ...+.+++.|++++.-+. .+.+.++...-.++|.+|
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~---~~~~~~~~~~~~~i~gd~--------~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDP---ERVEELREEGVEVIYGDA--------TDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSH---HHHHHHHHTTSEEEES-T--------TSHHHHHHTTGGCESEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCc---HHHHHHHhcccccccccc--------hhhhHHhhcCccccCEEE
Confidence 345677788888888877642 3455443322 234677788888877543 245666666666777776
Q ss_pred Ee
Q 022631 165 LA 166 (294)
Q Consensus 165 ~a 166 (294)
++
T Consensus 68 ~~ 69 (116)
T PF02254_consen 68 IL 69 (116)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 83
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=47.76 E-value=1.2e+02 Score=30.04 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=57.7
Q ss_pred CCCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCC--CCCc-----cHHHHHhCCCCEEEcCCCCCCCC---CC
Q 022631 77 GIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNK--PDCG-----GAEYARDNSIPVILFPKTKDEPN---GL 146 (294)
Q Consensus 77 ~~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~--~~~~-----~~~~A~~~gIP~~~~~~~~~~~~---~~ 146 (294)
+.-++||||+.|.+|-.++.++..+......++|...=+.- .++. .++.+...+..++.+-+..-..+ ..
T Consensus 132 P~~p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~F 211 (438)
T PRK00286 132 PFFPKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAF 211 (438)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhcc
Confidence 33478999999999999988888766543334544432221 1221 23445444556666655432222 24
Q ss_pred ChhHHHHHHHhcCCcEEEEeccccccChhHHh
Q 022631 147 SPNDLVAALSEVNVDFILLAGYLKLIPMELIR 178 (294)
Q Consensus 147 ~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~ 178 (294)
||+++.+.+-+...=+|.-+| +=..-.+++
T Consensus 212 n~e~v~~ai~~~~~Pvis~IG--HE~D~tl~D 241 (438)
T PRK00286 212 NDEAVARAIAASRIPVISAVG--HETDFTIAD 241 (438)
T ss_pred CcHHHHHHHHcCCCCEEEecc--CCCCccHHH
Confidence 788888888877666555444 434444444
No 84
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=46.67 E-value=1.3e+02 Score=28.58 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=16.4
Q ss_pred ccChhHHhcCCCCEEEEcCCCCCCCCCC
Q 022631 171 LIPMELIRAYPRSIVNIHPSLLPAFGGK 198 (294)
Q Consensus 171 ilp~~~l~~~~~g~iNiHPSlLP~yRG~ 198 (294)
.|..++++..+.+.+-+||.. ||.
T Consensus 244 ~v~~ell~~a~~~ai~mHclP----Rg~ 267 (301)
T TIGR00670 244 GITLERLEAAKKGVIIMHPLP----RVD 267 (301)
T ss_pred eECHHHHhhcCCCCEEECCCC----CCc
Confidence 355577776666788888865 763
No 85
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=45.98 E-value=2e+02 Score=28.19 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=19.5
Q ss_pred ccChhHHhcCC-CCEEEEcCCCCCCC-CCC
Q 022631 171 LIPMELIRAYP-RSIVNIHPSLLPAF-GGK 198 (294)
Q Consensus 171 ilp~~~l~~~~-~g~iNiHPSlLP~y-RG~ 198 (294)
.|..++++..+ ..++-+|| ||.+ ||.
T Consensus 293 ~vt~e~l~~a~~~~~i~MHc--LP~~~Rg~ 320 (357)
T TIGR03316 293 VCTEERMALTHDGEALYMHC--LPADIRGV 320 (357)
T ss_pred eECHHHHHhcCCCCcEEECC--CCCCccCc
Confidence 46777777776 56889998 6787 885
No 86
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=45.30 E-value=1.6e+02 Score=30.71 Aligned_cols=34 Identities=18% Similarity=-0.046 Sum_probs=17.6
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecC
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTN 116 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~ 116 (294)
-|++++..|+|..-+.+...+... .++|.+++-+
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~--G~~Vval~Rn 113 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKL--GFRVRAGVRS 113 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 345444444555555666665443 2466655443
No 87
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=45.24 E-value=2.3e+02 Score=27.04 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=53.5
Q ss_pred hHHHHHHHHH----HcCCCCceEEEEecCCC-CC---ccHHHHHhCCC-CEEEcCCCCCCCCCCC------hhHHHHHHH
Q 022631 92 SNFRSIHAAC----LAGSVYGDVVVLVTNKP-DC---GGAEYARDNSI-PVILFPKTKDEPNGLS------PNDLVAALS 156 (294)
Q Consensus 92 s~l~~ll~~~----~~~~~~~eI~~Vvt~~~-~~---~~~~~A~~~gI-P~~~~~~~~~~~~~~~------d~~l~~~L~ 156 (294)
+--|+|+|.. ..|.+.+--++.|.+.. .. .....+...|+ .+..+....+.+.... ..++.+.++
T Consensus 137 HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~ 216 (310)
T PRK13814 137 HPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLL 216 (310)
T ss_pred CchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhC
Confidence 4466666642 23444443445555432 11 23466778887 5655544333332211 022234443
Q ss_pred hcCCcEEEEeccc----------------cccChhHHhcCCCCEEEEcCCCCCCCCC
Q 022631 157 EVNVDFILLAGYL----------------KLIPMELIRAYPRSIVNIHPSLLPAFGG 197 (294)
Q Consensus 157 ~~~~DliV~agy~----------------~ilp~~~l~~~~~g~iNiHPSlLP~yRG 197 (294)
+.|++..-.|. ..|..++++..+..++-+|| ||.+||
T Consensus 217 --~aDvvy~~~~~~er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHc--LP~~Rg 269 (310)
T PRK13814 217 --NSDVIVTLRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHP--GPVNRE 269 (310)
T ss_pred --CCCEEEECccccccccchhHHHHhCCCcccCHHHHHhcCCCCEEECC--CCCCCC
Confidence 67888776653 33455555555556777776 567776
No 88
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=44.89 E-value=1e+02 Score=30.15 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=53.7
Q ss_pred CceeEEEEEeCCc-----hHHHHHHHHHHcCCCCceEEEEecCCCC-----------CccHHHHHhCCCCEEEcCCCCCC
Q 022631 79 KKKNLAVFVSGGG-----SNFRSIHAACLAGSVYGDVVVLVTNKPD-----------CGGAEYARDNSIPVILFPKTKDE 142 (294)
Q Consensus 79 ~~~rIaVl~SG~g-----s~l~~ll~~~~~~~~~~eI~~Vvt~~~~-----------~~~~~~A~~~gIP~~~~~~~~~~ 142 (294)
+++||+|+.|||. ...+++....... ..+|.++.-.-.. ..+-.+-..-|-++.......+.
T Consensus 1 ~~kkIaIlTSGGdaPGmNa~Iravvr~a~~~--g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~ 78 (347)
T COG0205 1 MMKKIAILTSGGDAPGMNAVIRAVVRTAIKE--GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFK 78 (347)
T ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHHc--CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCcc
Confidence 3789999999965 2245555544333 4577776543211 01122333334444332222222
Q ss_pred CCCCChhHHHHHHHhcCCcEEEEec-cccccChhHHh-cCCCCEEEE
Q 022631 143 PNGLSPNDLVAALSEVNVDFILLAG-YLKLIPMELIR-AYPRSIVNI 187 (294)
Q Consensus 143 ~~~~~d~~l~~~L~~~~~DliV~ag-y~~ilp~~~l~-~~~~g~iNi 187 (294)
.++ .-+..++.|++.++|.+|..| =+-.-....|. .++..++.+
T Consensus 79 ~~e-~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 79 TEE-GRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred cHH-HHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 211 123667889999999888776 23333333443 333345544
No 89
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=44.84 E-value=38 Score=29.25 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=45.1
Q ss_pred cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccChhHHhcCC-----CCEEEEcCC
Q 022631 122 GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYP-----RSIVNIHPS 190 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~-----~g~iNiHPS 190 (294)
..++|+++|+.++.++. ..-+.+.+++.+||.+|-++..+-|.+-+....+ .|++|..|+
T Consensus 78 l~~lae~~g~~v~i~~G---------gt~ar~~ik~~~p~~iigVAC~~dL~~g~~~~~~~~ip~~gV~l~~~g 142 (158)
T PF01976_consen 78 LKKLAEKYGYKVYIATG---------GTLARKIIKEYRPKAIIGVACERDLISGIQDLKPLGIPVQGVLLDRPG 142 (158)
T ss_pred HHHHHHHcCCEEEEEcC---------hHHHHHHHHHhCCCEEEEEechHHHHHHHHHHhhcCCCeeEEEeCCCC
Confidence 46899999999988764 2455678899999999999987777666655433 456666665
No 90
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=44.26 E-value=45 Score=32.23 Aligned_cols=73 Identities=18% Similarity=0.110 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCC------CCChhHHHHHHHhcCCcEEEE
Q 022631 92 SNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPN------GLSPNDLVAALSEVNVDFILL 165 (294)
Q Consensus 92 s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~------~~~d~~l~~~L~~~~~DliV~ 165 (294)
.-|+.++..+... .++| +||.+......++++.+|+++..+.+...... .....++.+.+++++||++|+
T Consensus 14 hfFk~~I~eL~~~--GheV--~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is 89 (335)
T PF04007_consen 14 HFFKNIIRELEKR--GHEV--LITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAIS 89 (335)
T ss_pred HHHHHHHHHHHhC--CCEE--EEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEe
Confidence 3478888877553 2344 44445444567899999999998875432210 012346778888899999997
Q ss_pred ecc
Q 022631 166 AGY 168 (294)
Q Consensus 166 agy 168 (294)
.+-
T Consensus 90 ~~s 92 (335)
T PF04007_consen 90 FGS 92 (335)
T ss_pred cCc
Confidence 653
No 91
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=44.12 E-value=1.4e+02 Score=29.54 Aligned_cols=77 Identities=22% Similarity=0.200 Sum_probs=49.9
Q ss_pred EEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc-CCcEE
Q 022631 85 VFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV-NVDFI 163 (294)
Q Consensus 85 Vl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~-~~Dli 163 (294)
|.+.++|.....++..+... .+.|.+-|.+.-|.. .+.|+..|++++.-+. |. .+.++.+.+..+.. ..|.+
T Consensus 270 v~v~~~~~~~~~~~~~L~~~--g~~v~~g~l~~~d~d-~~~a~~l~~~~~~~~p--f~--~i~~~~~~~a~~~~~~~~~v 342 (402)
T PRK09536 270 VHVVGGGQPAARAVSRLVAA--GASVSVGPVPEGDTA-AETAARVGCEAVTVPP--FK--PIEDSTRAEATDLIIAADAV 342 (402)
T ss_pred EEEECCCCcHHHHHHHHHHC--CCeEEEecCcCcchh-HHHHHHcCCCEEeeCC--CC--CCCHHHHHHHHHHHHhCCEE
Confidence 44445666666667766554 346777666655543 4789999999986543 22 24555555555544 88999
Q ss_pred EEecc
Q 022631 164 LLAGY 168 (294)
Q Consensus 164 V~agy 168 (294)
|++++
T Consensus 343 i~~~~ 347 (402)
T PRK09536 343 VAAGV 347 (402)
T ss_pred EECCC
Confidence 99876
No 92
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=43.90 E-value=1.2e+02 Score=29.23 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=47.7
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCCC--CCc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcE
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVTNKP--DCG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDF 162 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~--~~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dl 162 (294)
|.|. ++.+-+.+..- ..+-++|||++. +.+ +.+..++.|+.+..++...-.+....-.+..+.+++.++|.
T Consensus 10 G~g~-l~~l~~~l~~~--~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~ 86 (376)
T cd08193 10 GAGS-LARLGELLAAL--GAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADG 86 (376)
T ss_pred CcCH-HHHHHHHHHHc--CCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 4443 45554444321 224467777653 222 34556778888877654332332222345677778899999
Q ss_pred EEEeccccccC
Q 022631 163 ILLAGYLKLIP 173 (294)
Q Consensus 163 iV~agy~~ilp 173 (294)
||..|=|..+.
T Consensus 87 IIaiGGGs~iD 97 (376)
T cd08193 87 VIGFGGGSSMD 97 (376)
T ss_pred EEEeCCchHHH
Confidence 99998776653
No 93
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=43.84 E-value=68 Score=28.31 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=42.0
Q ss_pred eEEEEEeCCc----hHHHHHHHHHHcCCCCceEEEEecCCCCC----ccHHHHHhCCCCEEEcCCCCCCCCCCChhH---
Q 022631 82 NLAVFVSGGG----SNFRSIHAACLAGSVYGDVVVLVTNKPDC----GGAEYARDNSIPVILFPKTKDEPNGLSPND--- 150 (294)
Q Consensus 82 rIaVl~SG~g----s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~----~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~--- 150 (294)
++.+|+.-+| |....|....... ..+|..|-++.-.. ..+.+|+..|+|++...... ++.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~------~~~~~~~ 73 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTES------DPAEIAR 73 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTS------CHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcch------hhHHHHH
Confidence 4445544333 5566665554433 34455444443222 24678999999988754211 1222
Q ss_pred -HHHHHHhcCCcEEEEeccccc
Q 022631 151 -LVAALSEVNVDFILLAGYLKL 171 (294)
Q Consensus 151 -l~~~L~~~~~DliV~agy~~i 171 (294)
.++.++..+.|+|++-.-++-
T Consensus 74 ~~l~~~~~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 74 EALEKFRKKGYDLVLIDTAGRS 95 (196)
T ss_dssp HHHHHHHHTTSSEEEEEE-SSS
T ss_pred HHHHHHhhcCCCEEEEecCCcc
Confidence 223334456788887665544
No 94
>PRK13938 phosphoheptose isomerase; Provisional
Probab=43.69 E-value=61 Score=28.82 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCC----ccHHHHHhCCCCEEEcCC
Q 022631 107 YGDVVVLVTNKPDC----GGAEYARDNSIPVILFPK 138 (294)
Q Consensus 107 ~~eI~~Vvt~~~~~----~~~~~A~~~gIP~~~~~~ 138 (294)
+.+++.+++..... ...+.|++.|++++.+..
T Consensus 113 ~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~ 148 (196)
T PRK13938 113 PGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTG 148 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 46788888876543 356899999999988764
No 95
>PRK13530 arsenate reductase; Provisional
Probab=43.49 E-value=45 Score=27.56 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=36.1
Q ss_pred ceeEEEEEeCCchH----HHHHHHHHHcCCCCceE--EEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHH
Q 022631 80 KKNLAVFVSGGGSN----FRSIHAACLAGSVYGDV--VVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVA 153 (294)
Q Consensus 80 ~~rIaVl~SG~gs~----l~~ll~~~~~~~~~~eI--~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~ 153 (294)
++||.+++.| .++ .++++.....+ ..++ .++-....+....+.++++||++-.. .++.+.+..
T Consensus 3 ~~~vLFvC~~-N~cRS~mAEal~~~~~~~--~~~v~SAG~~~~~~~~~a~~~l~e~Gi~~~~~-----~s~~l~~~~--- 71 (133)
T PRK13530 3 KKTIYFLCTG-NSCRSQMAEGWGKQYLGD--KWNVYSAGIEAHGVNPNAIKAMKEVGIDISNQ-----TSDIIDNDI--- 71 (133)
T ss_pred CCEEEEEcCC-chhHHHHHHHHHHHhcCC--CEEEECCCCCCCCCCHHHHHHHHHcCCCcCCC-----ccccCChhH---
Confidence 5677777666 344 33444333222 2222 11111122334568889999986321 122232221
Q ss_pred HHHhcCCcEEEEec
Q 022631 154 ALSEVNVDFILLAG 167 (294)
Q Consensus 154 ~L~~~~~DliV~ag 167 (294)
+ ..+|+||...
T Consensus 72 -~--~~~D~ii~m~ 82 (133)
T PRK13530 72 -L--NNADLVVTLC 82 (133)
T ss_pred -h--ccCCEEEEec
Confidence 1 3679998774
No 96
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=43.41 E-value=71 Score=31.90 Aligned_cols=58 Identities=9% Similarity=0.119 Sum_probs=36.5
Q ss_pred ceeEEEEEeCCchH--HHHHHHHHHcCCCCceEEEEecCCC---CC-----ccHHHHHhCCCCEEEcC
Q 022631 80 KKNLAVFVSGGGSN--FRSIHAACLAGSVYGDVVVLVTNKP---DC-----GGAEYARDNSIPVILFP 137 (294)
Q Consensus 80 ~~rIaVl~SG~gs~--l~~ll~~~~~~~~~~eI~~Vvt~~~---~~-----~~~~~A~~~gIP~~~~~ 137 (294)
..||+|-+|||--. +-.++..........++.++..|.. ++ .+.++|+++|||++...
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 46899999997633 3333333221122457888888753 22 24678999999987754
No 97
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=43.28 E-value=1.2e+02 Score=29.90 Aligned_cols=81 Identities=19% Similarity=0.123 Sum_probs=47.9
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCCC--CCc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcE
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVTNKP--DCG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDF 162 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~--~~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dl 162 (294)
|.|. ++.+-+.+..- ..+-++|||++. +.+ +.+..++.|+.+..++...-+|....-.+..+.+++.++|+
T Consensus 7 G~g~-~~~l~~~l~~~--g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~ 83 (414)
T cd08190 7 GPGV-TAEVGMDLKNL--GARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDA 83 (414)
T ss_pred CcCH-HHHHHHHHHHc--CCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 4443 55554444321 223467777653 122 33456678999887764332332222245667778899999
Q ss_pred EEEecccccc
Q 022631 163 ILLAGYLKLI 172 (294)
Q Consensus 163 iV~agy~~il 172 (294)
||..|=+..+
T Consensus 84 IIaiGGGSvi 93 (414)
T cd08190 84 FVAVGGGSVI 93 (414)
T ss_pred EEEeCCccHH
Confidence 9999877666
No 98
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=43.28 E-value=1.7e+02 Score=29.32 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=56.2
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCC-ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDC-GGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE 157 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~-~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~ 157 (294)
..+|++|+. | +.-.-.+...+ ..++-.+++++.+..... ...+.....+--.+.++. .++.++.+.+++
T Consensus 324 ~GkrvaI~~-~-~~~~~~l~~~l-~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~~~i~d-------~~~~e~~~~i~~ 393 (457)
T TIGR01284 324 RGKKVWVWS-G-GPKLWHWPRPL-EDELGMEVVAVSTKFGHEDDYEKIIARVREGTVIIDD-------PNELELEEIIEK 393 (457)
T ss_pred CCCEEEEEC-C-CcHHHHHHHHH-HHhCCCEEEEEEEEeCCHHHHHHHHHhcCCCeEEEeC-------CCHHHHHHHHHh
Confidence 367888752 2 22222233322 223456788876643221 122233332211122222 234577788899
Q ss_pred cCCcEEEEeccccccChhHHhcCCCCEEEEcCCC-CC--CCCCC
Q 022631 158 VNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSL-LP--AFGGK 198 (294)
Q Consensus 158 ~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSl-LP--~yRG~ 198 (294)
.+||+++.-++.+.+-.+ ....++++|... -| .|+|.
T Consensus 394 ~~pDllig~~~~~~~a~k----~gip~~~~~~~~~~~~~Gy~G~ 433 (457)
T TIGR01284 394 YKPDIILTGIREGELAKK----LGVPYINIHSYHNGPYIGFEGF 433 (457)
T ss_pred cCCCEEEecCCcchhhhh----cCCCEEEccccccCCccchhhH
Confidence 999999987777665443 344578887653 23 56663
No 99
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=43.13 E-value=92 Score=30.08 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=48.2
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC--------------CccHHHHHhCCCCEEEcCCCC-C-----
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD--------------CGGAEYARDNSIPVILFPKTK-D----- 141 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~--------------~~~~~~A~~~gIP~~~~~~~~-~----- 141 (294)
||+|.+|||--..-.+...... ..++.+|..+.-. ..+.++|+++|||++.++-.. +
T Consensus 1 kVlValSGGvDSsvla~lL~~~---g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~ 77 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ---GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVF 77 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc---CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHH
Confidence 6889999965222222221222 2467666543211 125689999999998876321 0
Q ss_pred -----------CC-------CCCChhHHHHHHHhcCCcEEEEecccccc
Q 022631 142 -----------EP-------NGLSPNDLVAALSEVNVDFILLAGYLKLI 172 (294)
Q Consensus 142 -----------~~-------~~~~d~~l~~~L~~~~~DliV~agy~~il 172 (294)
.+ +.+.-..+.+..++.++|.++...|.+..
T Consensus 78 ~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~ 126 (349)
T cd01998 78 EPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIE 126 (349)
T ss_pred HHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCee
Confidence 00 00111233445567788888888876654
No 100
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=42.85 E-value=52 Score=32.71 Aligned_cols=58 Identities=21% Similarity=0.394 Sum_probs=37.2
Q ss_pred ceeEEEEEeCCchHHHHHHH------HHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCC
Q 022631 80 KKNLAVFVSGGGSNFRSIHA------ACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPK 138 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~------~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~ 138 (294)
..-+.|++|.+|++.+.+.. .+..+....+..++||+ ++.+..++|++.|++++.++.
T Consensus 111 ~~TlviviSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd-~~s~L~~~a~~~g~~~f~ip~ 174 (410)
T PRK03868 111 ENTLFIVISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITD-PDSKLEQFAKENNIKCFNIPK 174 (410)
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHHhccccccccEEEEEec-CCchHHHhHHhcCCcEEecCC
Confidence 55678889999977655443 22110011334556676 344688999999999988764
No 101
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=42.67 E-value=56 Score=32.94 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=36.0
Q ss_pred ceeEEEEEeCCchHHHHHH------HHHH-cCC-CCceEEEEecCCCCCccHHHHHhCCCCEEEcCC
Q 022631 80 KKNLAVFVSGGGSNFRSIH------AACL-AGS-VYGDVVVLVTNKPDCGGAEYARDNSIPVILFPK 138 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll------~~~~-~~~-~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~ 138 (294)
..-..|++|.+|++.+.+. +.++ .|. .... ..+||++.+..+.++|+++|++++.++.
T Consensus 132 ~~Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~-~vaiTd~~~g~L~~~A~~~g~~~f~ip~ 197 (446)
T PRK00973 132 EKTLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKH-LVFTTDPEKGKLKKIAEKEGYRTLEIPE 197 (446)
T ss_pred ccEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccce-EEEEcCCCccchHHHHHHcCCcEEeeCC
Confidence 3446678888887654433 2221 111 1223 3577775554578999999999988764
No 102
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=42.60 E-value=1.3e+02 Score=28.99 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCCCceEEEEecCCCCC--c----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEe
Q 022631 93 NFRSIHAACLAGSVYGDVVVLVTNKPDC--G----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLA 166 (294)
Q Consensus 93 ~l~~ll~~~~~~~~~~eI~~Vvt~~~~~--~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~a 166 (294)
.++.+.+.+..- ..+-++|||++.-. + +.+..++.|+.+..++.....+....-.++++.+++.++|.||..
T Consensus 10 ~l~~l~~~l~~~--~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~Iiai 87 (370)
T cd08551 10 AIEKLGEEIKNL--GGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAV 87 (370)
T ss_pred HHHHHHHHHHHc--CCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 355555554431 22345677765321 2 345566778888776543322322223456677788899999998
Q ss_pred cccccc
Q 022631 167 GYLKLI 172 (294)
Q Consensus 167 gy~~il 172 (294)
|=+..+
T Consensus 88 GGGs~~ 93 (370)
T cd08551 88 GGGSVL 93 (370)
T ss_pred CCchHH
Confidence 877665
No 103
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=42.57 E-value=1.2e+02 Score=31.21 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.0
Q ss_pred ccccChhHHhcCCCCEEEEcCCCCCCCCCC
Q 022631 169 LKLIPMELIRAYPRSIVNIHPSLLPAFGGK 198 (294)
Q Consensus 169 ~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~ 198 (294)
...+.+++++..+.+++-+|| ||.+||.
T Consensus 272 ~y~vt~elm~~ak~~ai~MHc--LPa~Rg~ 299 (525)
T PRK13376 272 AVTFRKEFLDKLPEGVKFYHP--LPRHKVY 299 (525)
T ss_pred CcEECHHHHhccCCCCEEECC--CCCCCCC
Confidence 345888899888778999998 6899994
No 104
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=42.48 E-value=1.7e+02 Score=23.05 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=55.8
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCC-CCChhHHHHHHHhcCC
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPN-GLSPNDLVAALSEVNV 160 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~-~~~d~~l~~~L~~~~~ 160 (294)
||..++.....-...++..+... ..+|..+.. ..+. .+.-...|+.+..++.....+. ...--++.+.+++.+|
T Consensus 1 KIl~i~~~~~~~~~~~~~~L~~~--g~~V~ii~~-~~~~--~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~ 75 (139)
T PF13477_consen 1 KILLIGNTPSTFIYNLAKELKKR--GYDVHIITP-RNDY--EKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEKP 75 (139)
T ss_pred CEEEEecCcHHHHHHHHHHHHHC--CCEEEEEEc-CCCc--hhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCCC
Confidence 56666655555555666666543 346654444 3222 3455578888877752211110 0111256677889999
Q ss_pred cEEEEecccc-ccChhHHhcCC---CCEEEEcCCCC
Q 022631 161 DFILLAGYLK-LIPMELIRAYP---RSIVNIHPSLL 192 (294)
Q Consensus 161 DliV~agy~~-ilp~~~l~~~~---~g~iNiHPSlL 192 (294)
|++.+-.... .+-..+..... .-++..|.+..
T Consensus 76 DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~~ 111 (139)
T PF13477_consen 76 DVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSDF 111 (139)
T ss_pred CEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCee
Confidence 9998765432 23233332222 23566776533
No 105
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=42.37 E-value=1.2e+02 Score=29.37 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=47.8
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCCC--CCc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcE
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVTNKP--DCG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDF 162 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~--~~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dl 162 (294)
|.|. +..|-+.+..- ..+-++|||++. +.+ +.+..++.|+.+.+++...-+|.-..-.+.++.+++.++|+
T Consensus 14 G~g~-l~~l~~~~~~~--g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~ 90 (382)
T PRK10624 14 GRGA-IGALTDEVKRR--GFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADY 90 (382)
T ss_pred CcCH-HHHHHHHHHhc--CCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 5443 55555544431 224567788753 222 34566778999887764332222111235667788899999
Q ss_pred EEEecccccc
Q 022631 163 ILLAGYLKLI 172 (294)
Q Consensus 163 iV~agy~~il 172 (294)
||..|=+..+
T Consensus 91 IIaiGGGS~i 100 (382)
T PRK10624 91 LIAIGGGSPQ 100 (382)
T ss_pred EEEeCChHHH
Confidence 9988866655
No 106
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=42.25 E-value=1e+02 Score=29.68 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=40.0
Q ss_pred EEEEecCCCCC---ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEecccccc
Q 022631 110 VVVLVTNKPDC---GGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLI 172 (294)
Q Consensus 110 I~~Vvt~~~~~---~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~il 172 (294)
=++|||++.-. .+.+..++.|+.+..++...-+|.-..-+++.+.+++.++|.||.+|=|..+
T Consensus 25 ~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~ 90 (367)
T cd08182 25 RVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVL 90 (367)
T ss_pred eEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHH
Confidence 35677765321 3445667788888777643323322223466777888999999988876655
No 107
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=41.84 E-value=1.7e+02 Score=27.48 Aligned_cols=102 Identities=17% Similarity=0.278 Sum_probs=55.9
Q ss_pred eeeeecCcccccCCCCcceeeecCCCCceeEEEEEeCCchHHH--HHH---HHHHcCCCCceEEEEecCCCCCc----cH
Q 022631 53 RLECVNFAEKVKNNGDKYEKDFDSGIKKKNLAVFVSGGGSNFR--SIH---AACLAGSVYGDVVVLVTNKPDCG----GA 123 (294)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIaVl~SG~gs~l~--~ll---~~~~~~~~~~eI~~Vvt~~~~~~----~~ 123 (294)
+.-||+-+.|.- ..-+.|++-.+ .-|-|++-|+|.-+. .+- .... ...+.+.+.|++.++..+ ..
T Consensus 7 iiKlGNig~s~~-idl~lDErAdR----edI~vrv~gsGaKm~pe~~~~~~~~~~-~~~~pDf~i~isPN~a~PGP~~AR 80 (277)
T PRK00994 7 IIKLGNIGMSPV-IDLLLDERADR----EDIDVRVVGSGAKMGPEEVEEVVKKML-EEWKPDFVIVISPNPAAPGPKKAR 80 (277)
T ss_pred EEEecccchHHH-HHHHHHhhhcc----cCceEEEeccCCCCCHHHHHHHHHHHH-HhhCCCEEEEECCCCCCCCchHHH
Confidence 455777766641 12224555333 334555555554432 111 1111 122446788888776554 45
Q ss_pred HHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEec
Q 022631 124 EYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAG 167 (294)
Q Consensus 124 ~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~ag 167 (294)
+...+.|||++++....- . ...+.|++.+.-+||+-.
T Consensus 81 E~l~~~~iP~IvI~D~p~----~---K~~d~l~~~g~GYIivk~ 117 (277)
T PRK00994 81 EILKAAGIPCIVIGDAPG----K---KVKDAMEEQGLGYIIVKA 117 (277)
T ss_pred HHHHhcCCCEEEEcCCCc----c---chHHHHHhcCCcEEEEec
Confidence 777888999999865321 1 112677887877777643
No 108
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=41.82 E-value=46 Score=27.75 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=27.6
Q ss_pred ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc--CCcEEEEecc
Q 022631 121 GGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV--NVDFILLAGY 168 (294)
Q Consensus 121 ~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~--~~DliV~agy 168 (294)
-+.+..++.|+.+.......+ +.+++.+.|++. +.|++|+.|=
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~D-----d~~~i~~~l~~~~~~~DliIttGG 75 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPD-----DPEEIREILRKAVDEADVVLTTGG 75 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCC-----CHHHHHHHHHHHHhCCCEEEECCC
Confidence 356788889988765543221 134555555543 7999999873
No 109
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=41.58 E-value=40 Score=28.92 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=44.3
Q ss_pred EEeCCchHHHHHHHHHHcCCCCceEEEEecCCC-CCcc-HHHHHhCCCCEEEcCCCCC--CCCCCChhHHHHHHHhc--C
Q 022631 86 FVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKP-DCGG-AEYARDNSIPVILFPKTKD--EPNGLSPNDLVAALSEV--N 159 (294)
Q Consensus 86 l~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~-~~~~-~~~A~~~gIP~~~~~~~~~--~~~~~~d~~l~~~L~~~--~ 159 (294)
|.||..|.++.++.. ..+ ..+ ++||.|.- +..+ .++.++.|+++..+...-. ..+......+.+.++.. +
T Consensus 9 LGsGKTTli~~ll~~-~~~--~~~-~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~~~ 84 (178)
T PF02492_consen 9 LGSGKTTLINHLLKR-NRQ--GER-VAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYEER 84 (178)
T ss_dssp TTSSHHHHHHHHHHH-HTT--TS--EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCHGC
T ss_pred CCCCHHHHHHHHHHH-hcC--Cce-eEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcCCC
Confidence 334555777887762 222 223 45555543 2332 3567778999888764321 11222234455555566 7
Q ss_pred CcEEEEeccccccChhH
Q 022631 160 VDFILLAGYLKLIPMEL 176 (294)
Q Consensus 160 ~DliV~agy~~ilp~~~ 176 (294)
+|.+++=.-|---|..+
T Consensus 85 ~d~IiIE~sG~a~p~~l 101 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPL 101 (178)
T ss_dssp -SEEEEEEECSSGGGGH
T ss_pred cCEEEECCccccccchh
Confidence 99999765553344444
No 110
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=41.46 E-value=84 Score=28.69 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=33.6
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCC------ccHHHHHhCCCCEEEcCC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDC------GGAEYARDNSIPVILFPK 138 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~------~~~~~A~~~gIP~~~~~~ 138 (294)
..|++|.+|||--..-.+..+...| .++.+|..+.+.. .+.++|++.||++..++.
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~g---~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~ 73 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDAG---TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKI 73 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHhC---CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 4689999999652222122222223 3566666554321 246899999999887753
No 111
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=40.83 E-value=2.2e+02 Score=26.02 Aligned_cols=90 Identities=21% Similarity=0.127 Sum_probs=50.9
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCC--------ccHHHHHhCCCCEEEcCCCCCCCCC----CC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDC--------GGAEYARDNSIPVILFPKTKDEPNG----LS 147 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~--------~~~~~A~~~gIP~~~~~~~~~~~~~----~~ 147 (294)
..+|+|-+|||--.+-.+......+.. .++.+|-.|..-. -+.++|+..|+|+++..-+...... .+
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~-~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 99 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR-IEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVERVTDDLGRETLDGKS 99 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC-ceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEEEEeeccccccCCCC
Confidence 469999999976443333222222211 5676666665321 2468999999998776432211110 00
Q ss_pred ---------hhHHHHHHHhcCCcEEEEecccc
Q 022631 148 ---------PNDLVAALSEVNVDFILLAGYLK 170 (294)
Q Consensus 148 ---------d~~l~~~L~~~~~DliV~agy~~ 170 (294)
-..+.+..++.++|.|+++.-..
T Consensus 100 ~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~d 131 (298)
T COG0037 100 ICAACRRLRRGLLYKIAKELGADKIATGHHLD 131 (298)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCeEEeccCcH
Confidence 11244556678999888776543
No 112
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=40.77 E-value=1.2e+02 Score=29.42 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=47.9
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCCCC--C----ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcE
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVTNKPD--C----GGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDF 162 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~--~----~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dl 162 (294)
|.| .++.+-+.+..- ..+-++||+++.- . .+.+..++.|+.+..++...-++....-++..+.+++.++|+
T Consensus 12 G~g-~l~~l~~~l~~~--g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~ 88 (377)
T cd08176 12 GAG-AIKEIGDELKNL--GFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDF 88 (377)
T ss_pred CcC-HHHHHHHHHHHh--CCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 444 355555544431 1234667776531 1 134566778998887764332232222345667778899999
Q ss_pred EEEecccccc
Q 022631 163 ILLAGYLKLI 172 (294)
Q Consensus 163 iV~agy~~il 172 (294)
||..|=+..+
T Consensus 89 IIavGGGS~i 98 (377)
T cd08176 89 IISIGGGSPH 98 (377)
T ss_pred EEEeCCcHHH
Confidence 9999877665
No 113
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=40.68 E-value=78 Score=26.58 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=33.1
Q ss_pred eEEEEEeCCchHH--HHHHHHHHcCCC--CceEEEEecCCCCC--------ccHHHHHhCCCCEEEcCC
Q 022631 82 NLAVFVSGGGSNF--RSIHAACLAGSV--YGDVVVLVTNKPDC--------GGAEYARDNSIPVILFPK 138 (294)
Q Consensus 82 rIaVl~SG~gs~l--~~ll~~~~~~~~--~~eI~~Vvt~~~~~--------~~~~~A~~~gIP~~~~~~ 138 (294)
||+|.+|||--.+ ..++.... +.. ..++.++..+.... .+.++|++.|+++..++-
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 68 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQ-RRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSF 68 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHH-hhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEeh
Confidence 6899999976333 22332222 111 34676666653211 246789999999887653
No 114
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=40.53 E-value=42 Score=32.60 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=32.8
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCC-------C--CC-------ccHHHHHhCCCCEEEcCC
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNK-------P--DC-------GGAEYARDNSIPVILFPK 138 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~-------~--~~-------~~~~~A~~~gIP~~~~~~ 138 (294)
+||+|.+|||--..-++....+.| .+|.+|..+. . .| .+.++|+.+|||++.++-
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~G---~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQG---YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHcC---CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 489999999653322222222233 4787776621 0 01 135789999999988753
No 115
>PRK04148 hypothetical protein; Provisional
Probab=40.06 E-value=1.9e+02 Score=24.32 Aligned_cols=83 Identities=16% Similarity=0.081 Sum_probs=47.0
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCC--------------CCC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDE--------------PNG 145 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~--------------~~~ 145 (294)
.+|++++..|.|..+...+.. .| ++|+++=.++ ...+.|++.++.++.-+-.... |..
T Consensus 17 ~~kileIG~GfG~~vA~~L~~--~G---~~ViaIDi~~---~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~ 88 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKE--SG---FDVIVIDINE---KAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR 88 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHH--CC---CEEEEEECCH---HHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence 478999988877655544442 23 4666652222 2457788888887765422110 100
Q ss_pred CChhHHHHHHHhcCCcEEEEecccc
Q 022631 146 LSPNDLVAALSEVNVDFILLAGYLK 170 (294)
Q Consensus 146 ~~d~~l~~~L~~~~~DliV~agy~~ 170 (294)
+--..+++.-++.++|++|..-.+.
T Consensus 89 el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 89 DLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 1123445555677888888654443
No 116
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=39.93 E-value=63 Score=27.02 Aligned_cols=53 Identities=21% Similarity=0.015 Sum_probs=30.4
Q ss_pred EEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcC
Q 022631 84 AVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFP 137 (294)
Q Consensus 84 aVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~ 137 (294)
+||.| +||--.+-++-+++..-.++|+++..++.-....+.|++++.++..+.
T Consensus 2 ~ILGs-TGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~ 54 (129)
T PF02670_consen 2 AILGS-TGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIA 54 (129)
T ss_dssp EEEST-TSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEES
T ss_pred EEEcC-CcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEc
Confidence 44433 455555555555544445778877775543445677777777766653
No 117
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=39.79 E-value=1.4e+02 Score=29.29 Aligned_cols=82 Identities=18% Similarity=0.142 Sum_probs=49.4
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCCC--CCc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcE
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVTNKP--DCG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDF 162 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~--~~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dl 162 (294)
|.| .++.|-+.++.- ..+.++|++++. +.+ +.+..++.||.+..++...-+|....-++..+..++.++|+
T Consensus 33 G~g-~~~~l~~~~~~~--g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~ 109 (395)
T PRK15454 33 GPG-AVSSCGQQAQTR--GLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDG 109 (395)
T ss_pred CcC-HHHHHHHHHHhc--CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCE
Confidence 443 344454444331 235677888652 122 35667788999887764333332222346677788999999
Q ss_pred EEEeccccccC
Q 022631 163 ILLAGYLKLIP 173 (294)
Q Consensus 163 iV~agy~~ilp 173 (294)
||..|=+..+.
T Consensus 110 IiavGGGS~iD 120 (395)
T PRK15454 110 VIAFGGGSVLD 120 (395)
T ss_pred EEEeCChHHHH
Confidence 99998766553
No 118
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=39.58 E-value=68 Score=31.71 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=12.8
Q ss_pred hhHHHHHHHhcCCcEEEEe
Q 022631 148 PNDLVAALSEVNVDFILLA 166 (294)
Q Consensus 148 d~~l~~~L~~~~~DliV~a 166 (294)
++.+.+.....++|+++.+
T Consensus 78 ~~~l~e~a~~~~~d~Vm~A 96 (385)
T COG0743 78 EEGLCELAAEDDADVVMNA 96 (385)
T ss_pred HHHHHHHHhcCCCCEEeeh
Confidence 3456666667778888765
No 119
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.26 E-value=1.1e+02 Score=30.99 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=49.0
Q ss_pred EEEEeCCc-----hHHHHHHHHHHcCCCCceEEEEecCCCC-CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh
Q 022631 84 AVFVSGGG-----SNFRSIHAACLAGSVYGDVVVLVTNKPD-CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE 157 (294)
Q Consensus 84 aVl~SG~g-----s~l~~ll~~~~~~~~~~eI~~Vvt~~~~-~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~ 157 (294)
+||++|.. |.|-.+...+... .. ++.||-... ..++-+|+++|++.-.+. --.+.+.+++++.+++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~---~~-vLYVsGEES~~QiklRA~RL~~~~~~l~----l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKR---GK-VLYVSGEESLQQIKLRADRLGLPTNNLY----LLAETNLEDIIAELEQ 166 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhc---Cc-EEEEeCCcCHHHHHHHHHHhCCCccceE----EehhcCHHHHHHHHHh
Confidence 56666622 3344444444332 13 444554332 346778999998752111 0123457899999999
Q ss_pred cCCcEEEEeccccccChh
Q 022631 158 VNVDFILLAGYLKLIPME 175 (294)
Q Consensus 158 ~~~DliV~agy~~ilp~~ 175 (294)
.+||++|+-+---+..++
T Consensus 167 ~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 167 EKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred cCCCEEEEeccceeeccc
Confidence 999999988764444443
No 120
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=38.94 E-value=1.9e+02 Score=29.08 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=65.2
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcC-CCCceEEEEecCCCC----C-------ccHHHHHhCCCCEEEcCCCCCCCCCCC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAG-SVYGDVVVLVTNKPD----C-------GGAEYARDNSIPVILFPKTKDEPNGLS 147 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~-~~~~eI~~Vvt~~~~----~-------~~~~~A~~~gIP~~~~~~~~~~~~~~~ 147 (294)
.+|+.|+ |.|...+.+...+.+. ....++++++.+.+. . .+.+++++++|..+.+.-...+ ...
T Consensus 143 ~rrVLIv--GaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~--~~~ 218 (463)
T PRK10124 143 KRMVAVA--GDLPAGQMLLESFRNEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCD--GAR 218 (463)
T ss_pred CCcEEEE--ECCHHHHHHHHHHhcCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcc--hHH
Confidence 4555555 6677777777776543 345689998875431 1 1246778888886665421111 111
Q ss_pred hhHHHHHHHhcCCcEEEEeccccccC--hhHHhcCCCCEEEEcCCCCCC
Q 022631 148 PNDLVAALSEVNVDFILLAGYLKLIP--MELIRAYPRSIVNIHPSLLPA 194 (294)
Q Consensus 148 d~~l~~~L~~~~~DliV~agy~~ilp--~~~l~~~~~g~iNiHPSlLP~ 194 (294)
-+++++.+++..+++.++.+...+.. .++-..-...+++++..++..
T Consensus 219 l~ell~~~~~~~v~V~ivP~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 267 (463)
T PRK10124 219 VKKLVRQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSG 267 (463)
T ss_pred HHHHHHHHHHcCCeEEEecchhhccccccchhhcCCeeEEEEeccccch
Confidence 24677788888999888887653321 112211223578888886643
No 121
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=38.91 E-value=1.5e+02 Score=28.75 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=48.1
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCCC--CCc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcE
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVTNKP--DCG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDF 162 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~--~~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dl 162 (294)
|.|. ++.+-+.+..- ..+-++|||++. +.+ +.+..++.|+.+..++...-++.-..-++..+.+++.++|.
T Consensus 13 G~g~-l~~l~~~l~~~--g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~ 89 (379)
T TIGR02638 13 GAGA-IEDIVDEVKRR--GFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADY 89 (379)
T ss_pred CcCH-HHHHHHHHHhc--CCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 4433 44444444321 123567888753 121 34556778999888764332232122235667788899999
Q ss_pred EEEeccccccC
Q 022631 163 ILLAGYLKLIP 173 (294)
Q Consensus 163 iV~agy~~ilp 173 (294)
||..|=+..+.
T Consensus 90 IiaiGGGSviD 100 (379)
T TIGR02638 90 LIAIGGGSPID 100 (379)
T ss_pred EEEeCChHHHH
Confidence 99998777663
No 122
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=38.79 E-value=72 Score=30.86 Aligned_cols=81 Identities=10% Similarity=-0.013 Sum_probs=44.6
Q ss_pred eeEEEEEeCCc---hHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh
Q 022631 81 KNLAVFVSGGG---SNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE 157 (294)
Q Consensus 81 ~rIaVl~SG~g---s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~ 157 (294)
.++.+|=..+. ..+..|++++.......+|.+.++++.+....+.+...+++++.++-. ....+...|+.
T Consensus 50 ~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d-------~~~~~~~~l~~ 122 (425)
T PRK05749 50 GPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYD-------LPGAVRRFLRF 122 (425)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCC-------cHHHHHHHHHh
Confidence 34556644432 334556666655443455654444433332222222335777766532 12466677899
Q ss_pred cCCcEEEEecc
Q 022631 158 VNVDFILLAGY 168 (294)
Q Consensus 158 ~~~DliV~agy 168 (294)
++||++++..+
T Consensus 123 ~~Pd~v~~~~~ 133 (425)
T PRK05749 123 WRPKLVIIMET 133 (425)
T ss_pred hCCCEEEEEec
Confidence 99999998755
No 123
>PRK14561 hypothetical protein; Provisional
Probab=38.65 E-value=82 Score=27.72 Aligned_cols=53 Identities=19% Similarity=0.103 Sum_probs=29.4
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCC---C-CccHHHHHhCCCCEEEcC
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKP---D-CGGAEYARDNSIPVILFP 137 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~---~-~~~~~~A~~~gIP~~~~~ 137 (294)
+|++|++|||--..-.+. .... . .++.++-.+-. + ..+...|++.|+|+..++
T Consensus 1 mkV~ValSGG~DSslll~-~l~~-~--~~v~a~t~~~g~~~e~~~a~~~a~~lGi~~~~v~ 57 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAI-LLER-F--YDVELVTVNFGVLDSWKHAREAAKALGFPHRVLE 57 (194)
T ss_pred CEEEEEEechHHHHHHHH-HHHh-c--CCeEEEEEecCchhHHHHHHHHHHHhCCCEEEEE
Confidence 479999999642221111 1111 1 23444322222 1 135689999999998875
No 124
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=38.59 E-value=1.5e+02 Score=29.90 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=24.1
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcC-CCCceEEEEecCCC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAG-SVYGDVVVLVTNKP 118 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~-~~~~eI~~Vvt~~~ 118 (294)
.+++.|+ |.|.+.+.+.+++... ....++++++.+.+
T Consensus 146 ~rrvLII--GaG~~a~~l~~~L~~~~~~g~~vVGfIDd~~ 183 (476)
T PRK15204 146 KKKTIIL--GSGQNARGAYSALQSEEMMGFDVIAFFDTDA 183 (476)
T ss_pred CCeEEEE--ECCHHHHHHHHHHHhCccCCcEEEEEEcCCc
Confidence 3555554 6777777887776543 33568888887543
No 125
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=37.97 E-value=1.3e+02 Score=33.69 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=38.6
Q ss_pred CCceeEEEEEeCCchHHHHHHHHHHc-CCC---------CceEEEEecCCCCCccHHHHHhC-CCCEEEcCCCCCCCCCC
Q 022631 78 IKKKNLAVFVSGGGSNFRSIHAACLA-GSV---------YGDVVVLVTNKPDCGGAEYARDN-SIPVILFPKTKDEPNGL 146 (294)
Q Consensus 78 ~~~~rIaVl~SG~gs~l~~ll~~~~~-~~~---------~~eI~~Vvt~~~~~~~~~~A~~~-gIP~~~~~~~~~~~~~~ 146 (294)
.+++||+|+.+| ..-+...+.+.. +.. ...+.++|++.......+++++. ++..+.++-.
T Consensus 567 ~~~~rIlVLGAG--~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~------- 637 (1042)
T PLN02819 567 KKSQNVLILGAG--RVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVS------- 637 (1042)
T ss_pred ccCCcEEEECCC--HHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecC-------
Confidence 457899999665 222222333221 111 11233455554433344566655 6655555421
Q ss_pred ChhHHHHHHHhcCCcEEEEec
Q 022631 147 SPNDLVAALSEVNVDFILLAG 167 (294)
Q Consensus 147 ~d~~l~~~L~~~~~DliV~ag 167 (294)
+.+++.+.++ ++|+||++.
T Consensus 638 D~e~L~~~v~--~~DaVIsal 656 (1042)
T PLN02819 638 DSESLLKYVS--QVDVVISLL 656 (1042)
T ss_pred CHHHHHHhhc--CCCEEEECC
Confidence 1245555554 388887764
No 126
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=37.95 E-value=1.4e+02 Score=29.64 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=33.9
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN 159 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~ 159 (294)
.+||.|+.+ |.--.+|..++++- ..+|.++..+ .+.+....+.+ ++.++. .+-+++++..++.+
T Consensus 2 ~~kVLvlG~--G~re~al~~~l~~~--g~~v~~~~~~-~Npg~~~~a~~----~~~~~~-------~d~e~l~~~~~~~~ 65 (435)
T PRK06395 2 TMKVMLVGS--GGREDAIARAIKRS--GAILFSVIGH-ENPSIKKLSKK----YLFYDE-------KDYDLIEDFALKNN 65 (435)
T ss_pred ceEEEEECC--cHHHHHHHHHHHhC--CCeEEEEECC-CChhhhhcccc----eeecCC-------CCHHHHHHHHHHhC
Confidence 467777644 44444445444432 2466666553 12222233332 112221 12356667777777
Q ss_pred CcEEEE
Q 022631 160 VDFILL 165 (294)
Q Consensus 160 ~DliV~ 165 (294)
+|++|.
T Consensus 66 id~Vi~ 71 (435)
T PRK06395 66 VDIVFV 71 (435)
T ss_pred CCEEEE
Confidence 777765
No 127
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=37.84 E-value=1.6e+02 Score=28.52 Aligned_cols=82 Identities=23% Similarity=0.195 Sum_probs=47.6
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCCC--CCc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcE
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVTNKP--DCG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDF 162 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~--~~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dl 162 (294)
|.| .++.|-+.+..- ..+-++|||++. +.+ +.+..++.|+.+..++...-++.-..-++..+.+++.++|.
T Consensus 10 G~g-~l~~l~~~l~~~--g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~ 86 (374)
T cd08189 10 GSG-SLAQLPAAISQL--GVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDA 86 (374)
T ss_pred CcC-HHHHHHHHHHhc--CCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 444 355555544331 123467777653 222 23456678998887764332232222346677888899999
Q ss_pred EEEeccccccC
Q 022631 163 ILLAGYLKLIP 173 (294)
Q Consensus 163 iV~agy~~ilp 173 (294)
||..|=+..+.
T Consensus 87 IIaiGGGS~~D 97 (374)
T cd08189 87 ILAVGGGSVID 97 (374)
T ss_pred EEEeCCccHHH
Confidence 99888666553
No 128
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=37.61 E-value=3.1e+02 Score=28.20 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=59.0
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCc-cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCG-GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE 157 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~-~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~ 157 (294)
.-+|++|+ ++|.-.-.+...+. .++-.++++++|.....+ ..+..+..+--.+.+++ .++-+..+.+++
T Consensus 327 ~GKrvai~--~gg~~~~~~~~~l~-~ElGmevv~~~t~~~~~~d~~~~~~~~~~~~~~i~D-------~~~~e~~~~l~~ 396 (513)
T TIGR01861 327 KGKKVCLW--PGGSKLWHWAHVIE-EEMGLKVVSVYSKFGHQGDMEKGVARCGEGALAIDD-------PNELEGLEAMEM 396 (513)
T ss_pred CCCEEEEE--CCchHHHHHHHHHH-HhCCCEEEEEeccCCCHHHHHHHHHhCCCCcEEecC-------CCHHHHHHHHHh
Confidence 36787777 33444444444443 234568888888643221 12233334333444432 234566678899
Q ss_pred cCCcEEEEeccccccChhHHhcCCCCEEEEcCCCC-C--CCCC
Q 022631 158 VNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLL-P--AFGG 197 (294)
Q Consensus 158 ~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlL-P--~yRG 197 (294)
.++|++|.-++.+.+-. +..-.++..|...- | .|+|
T Consensus 397 ~~~Dllig~s~~~~~A~----k~gIP~ld~~~~~~~p~~GY~G 435 (513)
T TIGR01861 397 LKPDIILTGKRPGEVSK----KMRVPYLNAHAYHNGPYKGFEG 435 (513)
T ss_pred cCCCEEEecCccchhHh----hcCCCEEEccCCCCCCcchHhh
Confidence 99999998888775543 33344676665432 3 5666
No 129
>PRK10206 putative oxidoreductase; Provisional
Probab=37.56 E-value=81 Score=30.14 Aligned_cols=70 Identities=17% Similarity=0.059 Sum_probs=36.4
Q ss_pred eeEEEEEeCCchHHHH-HHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcC
Q 022631 81 KNLAVFVSGGGSNFRS-IHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN 159 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~-ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~ 159 (294)
.|++|+..|. .... .+..........++++|....++. .+.+++++...+ + .++.+.|+..+
T Consensus 2 irvgiiG~G~--~~~~~h~~~~~~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~-~------------~~~~ell~~~~ 64 (344)
T PRK10206 2 INCAFIGFGK--STTRYHLPYVLNRKDSWHVAHIFRRHAKP--EEQAPIYSHIHF-T------------SDLDEVLNDPD 64 (344)
T ss_pred eEEEEECCCH--HHhheehhhHhcCCCCEEEEEEEcCChhH--HHHHHhcCCCcc-c------------CCHHHHhcCCC
Confidence 5888885553 2211 122222211246888887654332 356666653211 1 12334556678
Q ss_pred CcEEEEec
Q 022631 160 VDFILLAG 167 (294)
Q Consensus 160 ~DliV~ag 167 (294)
+|+++++.
T Consensus 65 iD~V~I~t 72 (344)
T PRK10206 65 VKLVVVCT 72 (344)
T ss_pred CCEEEEeC
Confidence 88888765
No 130
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=37.54 E-value=2.1e+02 Score=26.41 Aligned_cols=91 Identities=24% Similarity=0.316 Sum_probs=53.3
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceE-EEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCC-ChhHHHHHHHh
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDV-VVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGL-SPNDLVAALSE 157 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI-~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~-~d~~l~~~L~~ 157 (294)
+.+|-|| ||.+--+.|.+.+.... .++ +.|.|.- +. ....+++++.-. . +.+++.+.|++
T Consensus 2 ~~~Ilvl--gGT~egr~la~~L~~~g--~~v~~Svat~~---g~---~~~~~~~v~~G~--------l~~~~~l~~~l~~ 63 (248)
T PRK08057 2 MPRILLL--GGTSEARALARALAAAG--VDIVLSLAGRT---GG---PADLPGPVRVGG--------FGGAEGLAAYLRE 63 (248)
T ss_pred CceEEEE--echHHHHHHHHHHHhCC--CeEEEEEccCC---CC---cccCCceEEECC--------CCCHHHHHHHHHH
Confidence 3455555 55666777777765332 233 3344331 11 445567666421 3 45788899999
Q ss_pred cCCcEEEEec--cccccChhHHhcC---CCCEEEEc
Q 022631 158 VNVDFILLAG--YLKLIPMELIRAY---PRSIVNIH 188 (294)
Q Consensus 158 ~~~DliV~ag--y~~ilp~~~l~~~---~~g~iNiH 188 (294)
.++++||=|. |-..++....+.. .-..+-+.
T Consensus 64 ~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 64 EGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 9999998776 5556666666543 23345554
No 131
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=37.38 E-value=1.1e+02 Score=27.15 Aligned_cols=67 Identities=24% Similarity=0.267 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcC--CcEEEEec
Q 022631 92 SNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN--VDFILLAG 167 (294)
Q Consensus 92 s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~--~DliV~ag 167 (294)
.-+++.++.++... -.+.|++|..+..+..+++..|||++.--.+. +...+.++|++.+ ++=+|++|
T Consensus 49 pe~~~W~~e~k~~g---i~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP------~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 49 PELRAWLAELKEAG---IKVVVVSNNKESRVARAAEKLGVPFIYRAKKP------FGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred HHHHHHHHHHHhcC---CEEEEEeCCCHHHHHhhhhhcCCceeecccCc------cHHHHHHHHHHcCCChhHEEEEc
Confidence 44566666555432 24667777777777778888888887543222 2346666676553 34456555
No 132
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=36.96 E-value=1.4e+02 Score=29.10 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=47.8
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCCC--CCc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcE
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVTNKP--DCG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDF 162 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~--~~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dl 162 (294)
|.| .+..|-+.+..- ..+-++|||++. ..+ +.+..++.||.+..++...-+|.-..-++..+..++.++|.
T Consensus 15 G~g-~~~~l~~~~~~~--g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~ 91 (383)
T PRK09860 15 GAD-SLTDAMNMMADY--GFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDS 91 (383)
T ss_pred CcC-HHHHHHHHHHhc--CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCE
Confidence 433 344454444331 224566777652 222 34566788999877765332332222346677888999999
Q ss_pred EEEecccccc
Q 022631 163 ILLAGYLKLI 172 (294)
Q Consensus 163 iV~agy~~il 172 (294)
||..|=+..+
T Consensus 92 IiaiGGGS~i 101 (383)
T PRK09860 92 VISLGGGSPH 101 (383)
T ss_pred EEEeCCchHH
Confidence 9988866555
No 133
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=36.93 E-value=75 Score=24.63 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCCceEEEEecCCCC---CccHHHHHhCCCCEEEcCC
Q 022631 95 RSIHAACLAGSVYGDVVVLVTNKPD---CGGAEYARDNSIPVILFPK 138 (294)
Q Consensus 95 ~~ll~~~~~~~~~~eI~~Vvt~~~~---~~~~~~A~~~gIP~~~~~~ 138 (294)
...+++++.|. ...+.+-.|-+. ..+..+|++.|||+.++++
T Consensus 19 kqt~Kai~kg~--~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 19 KETLKALKKDQ--VTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHHhcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 34456676663 334444333322 2457899999999999875
No 134
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=36.70 E-value=1.2e+02 Score=30.10 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=40.5
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCC-CCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKP-DCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV 158 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~-~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~ 158 (294)
++||.|+ |+|..-..++.++++ +..+++++-+++. +++..++|.+. +.++.....+.-.+-+.+++..++.
T Consensus 2 ~kkili~--g~g~~~~~~~~aa~~--lG~~vv~~~~~~d~~a~~~~~aD~~----~~~~~~~~~~~y~d~~~l~~~a~~~ 73 (449)
T TIGR00514 2 LDKILIA--NRGEIALRILRACKE--LGIKTVAVHSTADRDALHVLLADEA----VCIGPAPSAKSYLNIPNIISAAEIT 73 (449)
T ss_pred cceEEEe--CCCHHHHHHHHHHHH--cCCeEEEEEChhhhcccccccCCEE----EEcCCCCchhchhCHHHHHHHHHHh
Confidence 5788777 667766666776654 3456666544322 33334444432 1111110000001234677777788
Q ss_pred CCcEEEE
Q 022631 159 NVDFILL 165 (294)
Q Consensus 159 ~~DliV~ 165 (294)
++|.++-
T Consensus 74 ~id~I~p 80 (449)
T TIGR00514 74 GADAIHP 80 (449)
T ss_pred CCCEEEe
Confidence 8887764
No 135
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=36.61 E-value=25 Score=29.92 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=38.9
Q ss_pred CEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEE
Q 022631 183 SIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQR 237 (294)
Q Consensus 183 g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~ 237 (294)
.++-.|+=.+|.|||-+.-+-..+|.=|+.. ..+-+++-++-+..--|.||.|-
T Consensus 61 ~~vecHa~y~P~fRG~a~~~~~~F~kwlL~N-s~f~~vit~vp~kt~~Grvic~l 114 (151)
T PF11039_consen 61 SVVECHAMYDPGFRGYALEIGRLFCKWLLEN-SPFQNVITFVPDKTRYGRVICRL 114 (151)
T ss_pred eeEEEEeeeccccchhHHHHHHHHHHHHhcC-CceeEEEEecccccccchhHhhh
Confidence 4899999999999995522223455434444 55667777888889999998875
No 136
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=36.54 E-value=1.2e+02 Score=29.27 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCCCceEEEEecCCCC---Cc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEE
Q 022631 93 NFRSIHAACLAGSVYGDVVVLVTNKPD---CG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILL 165 (294)
Q Consensus 93 ~l~~ll~~~~~~~~~~eI~~Vvt~~~~---~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~ 165 (294)
.+..+-+.+... . +=++|||++.- .+ +.+..++.|+.+..++...-+|.-..-++..+.+++.++|.||.
T Consensus 13 ~l~~l~~~~~~~--g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia 89 (380)
T cd08185 13 KLNELGEEALKP--G-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVG 89 (380)
T ss_pred HHHHHHHHHHhc--C-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344454544432 1 23567776532 22 34556778999887764332332222345667788899999998
Q ss_pred eccccccC
Q 022631 166 AGYLKLIP 173 (294)
Q Consensus 166 agy~~ilp 173 (294)
+|=|..+.
T Consensus 90 vGGGS~iD 97 (380)
T cd08185 90 LGGGSSMD 97 (380)
T ss_pred eCCccHHH
Confidence 88766553
No 137
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=36.39 E-value=2.9e+02 Score=26.41 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=37.4
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN 159 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~ 159 (294)
++||.|+ |+|..-+.++.+.++ ...+++++ ...++.+...+|.. ++..+. .+.+.+.+.+++.+
T Consensus 12 ~~~ilIi--G~g~~~~~~~~a~~~--~G~~v~~~-~~~~~~~~~~~ad~----~~~~~~-------~d~~~l~~~~~~~~ 75 (395)
T PRK09288 12 ATRVMLL--GSGELGKEVAIEAQR--LGVEVIAV-DRYANAPAMQVAHR----SHVIDM-------LDGDALRAVIEREK 75 (395)
T ss_pred CCEEEEE--CCCHHHHHHHHHHHH--CCCEEEEE-eCCCCCchHHhhhh----eEECCC-------CCHHHHHHHHHHhC
Confidence 5677766 555544445554433 23456544 44445554455543 122221 12356777777788
Q ss_pred CcEEEEe
Q 022631 160 VDFILLA 166 (294)
Q Consensus 160 ~DliV~a 166 (294)
+|+++..
T Consensus 76 id~vi~~ 82 (395)
T PRK09288 76 PDYIVPE 82 (395)
T ss_pred CCEEEEe
Confidence 8877753
No 138
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=36.31 E-value=2e+02 Score=27.01 Aligned_cols=109 Identities=14% Similarity=0.045 Sum_probs=58.4
Q ss_pred eEEEEEeCCc--hHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCE-EEcCCC-CCCCCC----CChhHHHH
Q 022631 82 NLAVFVSGGG--SNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPV-ILFPKT-KDEPNG----LSPNDLVA 153 (294)
Q Consensus 82 rIaVl~SG~g--s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~-~~~~~~-~~~~~~----~~d~~l~~ 153 (294)
||++++..+. .-+..++.++... ...+..+|+|........++.+.++|+. +.+.-. ...... ..-.++.+
T Consensus 2 ~i~~~~gtr~~~~~~~p~~~~l~~~-~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (365)
T TIGR00236 2 KVSIVLGTRPEAIKMAPLIRALKKY-PEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEE 80 (365)
T ss_pred eEEEEEecCHHHHHHHHHHHHHhhC-CCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHH
Confidence 6777644333 2255666666532 2457778888654333456777799863 222111 100000 00135667
Q ss_pred HHHhcCCcEEEEecccc-ccChhHHhc-CCCCEEEEcCCC
Q 022631 154 ALSEVNVDFILLAGYLK-LIPMELIRA-YPRSIVNIHPSL 191 (294)
Q Consensus 154 ~L~~~~~DliV~agy~~-ilp~~~l~~-~~~g~iNiHPSl 191 (294)
.+++.+||++++.|... .+-..+... ..-.++.+|.++
T Consensus 81 ~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~ 120 (365)
T TIGR00236 81 LLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL 120 (365)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC
Confidence 88899999999997422 122222221 223577787776
No 139
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=36.04 E-value=95 Score=25.43 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHc-CCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEe
Q 022631 90 GGSNFRSIHAACLA-GSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLA 166 (294)
Q Consensus 90 ~gs~l~~ll~~~~~-~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~a 166 (294)
.+.+-+.+.+.+.+ +....++++++.++++.... ...|+|+.- +.+++.+.+++.++|-++++
T Consensus 85 ~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~---~~~~~~~lg-----------~~~~l~~~~~~~~id~v~ia 148 (175)
T PF13727_consen 85 AGGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGP---EIDGVPVLG-----------DLDDLPELVREHDIDEVIIA 148 (175)
T ss_dssp -SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT----EETTEEEE-------------GGGHHHHHHHHT--EEEE-
T ss_pred EechHHHHHHHHHhhhhcCceEEEEEeCchhhccC---cccCceeEc-----------CHHHHHHHHHhCCCCEEEEE
Confidence 45555555565543 33456899998876542211 114667652 13567778888888887776
No 140
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=36.03 E-value=2.1e+02 Score=26.41 Aligned_cols=83 Identities=22% Similarity=0.272 Sum_probs=50.6
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHh--CCCCEEEcCCCCCCCCCC-ChhHHHHHHHhc
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARD--NSIPVILFPKTKDEPNGL-SPNDLVAALSEV 158 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~--~gIP~~~~~~~~~~~~~~-~d~~l~~~L~~~ 158 (294)
||-|| ||.+--+.|.+.+..... -++.|+|+- +.+.... .++++..- .. +.+++.+.|++.
T Consensus 2 ~ILvl--gGTtE~r~la~~L~~~g~--v~~sv~t~~----g~~~~~~~~~~~~v~~G--------~lg~~~~l~~~l~~~ 65 (249)
T PF02571_consen 2 KILVL--GGTTEGRKLAERLAEAGY--VIVSVATSY----GGELLKPELPGLEVRVG--------RLGDEEGLAEFLREN 65 (249)
T ss_pred EEEEE--echHHHHHHHHHHHhcCC--EEEEEEhhh----hHhhhccccCCceEEEC--------CCCCHHHHHHHHHhC
Confidence 55555 667778888888765432 234555532 2233322 24454431 12 457888899999
Q ss_pred CCcEEEEec--cccccChhHHhcC
Q 022631 159 NVDFILLAG--YLKLIPMELIRAY 180 (294)
Q Consensus 159 ~~DliV~ag--y~~ilp~~~l~~~ 180 (294)
+++++|=|. |-..++.+..+..
T Consensus 66 ~i~~vIDATHPfA~~is~na~~a~ 89 (249)
T PF02571_consen 66 GIDAVIDATHPFAAEISQNAIEAC 89 (249)
T ss_pred CCcEEEECCCchHHHHHHHHHHHH
Confidence 999998776 5666777766654
No 141
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=35.96 E-value=54 Score=26.27 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=15.7
Q ss_pred hhHHHHHHHhcCCcEEEEe
Q 022631 148 PNDLVAALSEVNVDFILLA 166 (294)
Q Consensus 148 d~~l~~~L~~~~~DliV~a 166 (294)
.+++.++.++.++||+|+-
T Consensus 51 ~~~l~~~a~~~~idlvvvG 69 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVG 69 (100)
T ss_dssp HHHHHHHHHHTTESEEEES
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 4688889999999999853
No 142
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=35.81 E-value=76 Score=31.48 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=12.3
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHc
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLA 103 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~ 103 (294)
++||.|+ |+|.---+|..++.+
T Consensus 4 ~~kvLvi--G~g~rehal~~~~~~ 25 (426)
T PRK13789 4 KLKVLLI--GSGGRESAIAFALRK 25 (426)
T ss_pred CcEEEEE--CCCHHHHHHHHHHHh
Confidence 3566666 555555556666544
No 143
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=35.67 E-value=1.8e+02 Score=28.83 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=48.3
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccH----HHHHhCCCCEEEcCCCCCCCCCCChhHHHHH
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGA----EYARDNSIPVILFPKTKDEPNGLSPNDLVAA 154 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~----~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~ 154 (294)
..+|++|. |.....-.+...+. ++-.++++|+++....... ++..+.+..+..++. .+..++.+.
T Consensus 299 ~gkrv~v~--g~~~~~~~l~~~L~--elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~-------~d~~e~~~~ 367 (429)
T cd03466 299 FGRKAAIY--GEPDFVVAITRFVL--ENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDG-------ADFFDIESY 367 (429)
T ss_pred CCCEEEEE--cCHHHHHHHHHHHH--HCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeC-------CCHHHHHHH
Confidence 35677666 33444444444443 2456777777755432212 123333444443332 124678888
Q ss_pred HHhcCCcEEEEeccccccCh
Q 022631 155 LSEVNVDFILLAGYLKLIPM 174 (294)
Q Consensus 155 L~~~~~DliV~agy~~ilp~ 174 (294)
+++.++|+++--.+.+.+..
T Consensus 368 l~~~~~dliiG~s~~~~~a~ 387 (429)
T cd03466 368 AKELKIDVLIGNSYGRRIAE 387 (429)
T ss_pred HHhcCCCEEEECchhHHHHH
Confidence 99999999998877765544
No 144
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=35.56 E-value=83 Score=23.97 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCCceEEEEecCCCCC---ccHHHHHhCCCCEEEcC
Q 022631 95 RSIHAACLAGSVYGDVVVLVTNKPDC---GGAEYARDNSIPVILFP 137 (294)
Q Consensus 95 ~~ll~~~~~~~~~~eI~~Vvt~~~~~---~~~~~A~~~gIP~~~~~ 137 (294)
...+.+++.| ....+.+-.|-++. .+..+|++++||++.++
T Consensus 17 ~~v~kai~~g--kaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 17 KQTVKALKRG--SVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred HHHHHHHHcC--CeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 3445566666 34555555444332 35688999999999876
No 145
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=35.50 E-value=1.2e+02 Score=29.43 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=40.0
Q ss_pred EEEEecCCCC---Cc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEecccccc
Q 022631 110 VVVLVTNKPD---CG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLI 172 (294)
Q Consensus 110 I~~Vvt~~~~---~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~il 172 (294)
=++|||++.- .+ +.+..++.|+.+..++...-++.-..-++..+.+++.++|+||.+|=|..+
T Consensus 28 r~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 97 (383)
T cd08186 28 KVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPI 97 (383)
T ss_pred EEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHH
Confidence 4667786531 22 345667789988777643322322223466778888999999988866554
No 146
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=35.37 E-value=61 Score=30.41 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=43.1
Q ss_pred hHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCC-----------CCCCCCCcchHHHHHHHcCCCEE
Q 022631 149 NDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPA-----------FGGKGYYGMKVHKAVIASGARYS 217 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~-----------yRG~~~yg~pv~~~aI~~G~~~t 217 (294)
+++-+.+++.+||++|+.+--+. +.-+.+..|.-+|+..+.+-|. ++|. |-.-+.|.+.....
T Consensus 38 ~~~~~~~~~~~pD~vVvi~~dH~-~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~~~~~~g~-----~~LA~~i~~~~~~~ 111 (277)
T cd07364 38 QPARDWIKKNKPDVAIIVYNDHA-SAFDLDIIPTFAIGTAEEFQPADEGYGPRPVPDVQGH-----PDLAWHIAQSLILD 111 (277)
T ss_pred HHHHHHHHHhCCCEEEEEcCchH-HhhcccCCCceEEeeccccccCccccCCCCCCCCCCC-----HHHHHHHHHHHHHc
Confidence 46677888999999999743331 1111223334467776654433 4443 22222344444455
Q ss_pred EEEEEEec-CCCCCCc
Q 022631 218 GPTIHFVD-EHYDTGR 232 (294)
Q Consensus 218 GvTvH~v~-~~~D~G~ 232 (294)
|+.+...+ -++|.|-
T Consensus 112 g~~~~~~~~~~lDHG~ 127 (277)
T cd07364 112 DFDMTIVNEMDVDHGL 127 (277)
T ss_pred CCCEEecCCCCCCcch
Confidence 66555554 3688884
No 147
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=35.21 E-value=1.5e+02 Score=31.28 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=45.6
Q ss_pred CceeEEEEEeCC-chHHHHHHHH-HHcCCCCceEEEEecCCCCC------ccHHHHHhC--CCCEEEcCCCCCCCCCCCh
Q 022631 79 KKKNLAVFVSGG-GSNFRSIHAA-CLAGSVYGDVVVLVTNKPDC------GGAEYARDN--SIPVILFPKTKDEPNGLSP 148 (294)
Q Consensus 79 ~~~rIaVl~SG~-gs~l~~ll~~-~~~~~~~~eI~~Vvt~~~~~------~~~~~A~~~--gIP~~~~~~~~~~~~~~~d 148 (294)
+..||+|+.+|+ ++++ +.. ...| -.+|.+|+++.... ...+.|++. +|++..++.+ .+
T Consensus 128 R~akVlVlG~Gg~~s~l---v~sL~~sG--~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~-------~~ 195 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKL---VRSLIDSG--FPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFA-------ED 195 (637)
T ss_pred hcccEEEEecCchHHHH---HHHHHhcC--CCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCC-------cc
Confidence 478999997775 3333 222 2234 35788888876532 124667764 4666666531 24
Q ss_pred hHHHHHHHhcCCcEEEEecc
Q 022631 149 NDLVAALSEVNVDFILLAGY 168 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy 168 (294)
+++.+.++ +.|+|+.+.=
T Consensus 196 ~dl~ev~~--~~DiVi~vsD 213 (637)
T TIGR03693 196 QHLHEAFE--PADWVLYVSD 213 (637)
T ss_pred hhHHHhhc--CCcEEEEECC
Confidence 56667774 5688887763
No 148
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=35.15 E-value=85 Score=29.66 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=52.7
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCC-CCChhHHHHHHHhc
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPN-GLSPNDLVAALSEV 158 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~-~~~d~~l~~~L~~~ 158 (294)
.+||.|+..|.|+.++.++..- . .-+++.| .-+..+.++|+++ +|...... +.+| ++.-++-.+++++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~---~-ve~i~~V---EID~~Vi~~ar~~-l~~~~~~~--~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHL---P-VERITMV---EIDPAVIELARKY-LPEPSGGA--DDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcC---C-cceEEEE---EcCHHHHHHHHHh-ccCccccc--CCCceEEEeccHHHHHHhC
Confidence 4699999888889898876652 1 2244444 2344577888876 33222100 1122 22234555666644
Q ss_pred --CCcEEEEeccccc------cChhHHhcC
Q 022631 159 --NVDFILLAGYLKL------IPMELIRAY 180 (294)
Q Consensus 159 --~~DliV~agy~~i------lp~~~l~~~ 180 (294)
.+|+||+-++-.. ...+|.+..
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~ 176 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGC 176 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHH
Confidence 5899999887552 345666543
No 149
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=34.65 E-value=35 Score=27.98 Aligned_cols=47 Identities=21% Similarity=0.327 Sum_probs=31.0
Q ss_pred EeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEc
Q 022631 87 VSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILF 136 (294)
Q Consensus 87 ~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~ 136 (294)
.+||||+|+..++...+......++.++|+-.... ...+-+.|++.+
T Consensus 62 ~GgGGTdf~pvf~~~~~~~~~~~~vi~fTDg~~~~---~~~~P~~~vlWv 108 (126)
T PF09967_consen 62 KGGGGTDFRPVFEYLEENRPRPSVVIYFTDGEGWP---PEEAPPYPVLWV 108 (126)
T ss_pred CCCCCCcchHHHHHHHhcCCCCCEEEEEeCCCCCC---CCCCCCCcEEEE
Confidence 57899999999999877665566777788732211 122236776654
No 150
>PRK10126 tyrosine phosphatase; Provisional
Probab=34.64 E-value=1.3e+02 Score=25.10 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=38.3
Q ss_pred ceeEEEEEeCCchH----HHHHHHHHHcCCCCceEEEEec---CCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHH
Q 022631 80 KKNLAVFVSGGGSN----FRSIHAACLAGSVYGDVVVLVT---NKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLV 152 (294)
Q Consensus 80 ~~rIaVl~SG~gs~----l~~ll~~~~~~~~~~eI~~Vvt---~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~ 152 (294)
++||.+++.|+ +| .++++.... +.....=.++.. .+.+....+.++++||+.-.. .++.+.++++
T Consensus 2 ~~~iLFVC~gN-~cRSpmAEa~~~~~~-~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~h-----~sr~lt~~~~- 73 (147)
T PRK10126 2 FNNILVVCVGN-ICRSPTAERLLQRYH-PELKVESAGLGALVGKGADPTAISVAAEHQLSLEGH-----CARQISRRLC- 73 (147)
T ss_pred CCeEEEEcCCc-HhHHHHHHHHHHHhc-CCeEEEeeeccCCCCCCCCHHHHHHHHHcCCCcCCC-----ccccCCHHHh-
Confidence 35777776663 33 333444332 222222233321 123345678899999996321 1233333321
Q ss_pred HHHHhcCCcEEEEecc
Q 022631 153 AALSEVNVDFILLAGY 168 (294)
Q Consensus 153 ~~L~~~~~DliV~agy 168 (294)
...|+||.+.-
T Consensus 74 -----~~~DlIl~Md~ 84 (147)
T PRK10126 74 -----RNYDLILTMEK 84 (147)
T ss_pred -----ccCCEEEECCH
Confidence 37899998753
No 151
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=34.39 E-value=3.3e+02 Score=27.17 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=57.3
Q ss_pred CCCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecC--CCCCc-----cHHHHHhCC-CCEEEcCCCCCCCC---C
Q 022631 77 GIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTN--KPDCG-----GAEYARDNS-IPVILFPKTKDEPN---G 145 (294)
Q Consensus 77 ~~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~--~~~~~-----~~~~A~~~g-IP~~~~~~~~~~~~---~ 145 (294)
+.-++||||+.|.+|-.++.++..+......++|...=+. -.++. ..+.+...+ +.++.+.+..-..+ .
T Consensus 126 P~~p~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~ 205 (432)
T TIGR00237 126 PHFPKRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWS 205 (432)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhh
Confidence 4457899999999999999888877654333455433221 11221 223343333 66666654332111 2
Q ss_pred CChhHHHHHHHhcCCcEEEEeccccccChhHHh
Q 022631 146 LSPNDLVAALSEVNVDFILLAGYLKLIPMELIR 178 (294)
Q Consensus 146 ~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~ 178 (294)
.|++++.+.+.....=+|--+| +=..-.+++
T Consensus 206 Fn~e~~~rai~~~~~Pvis~iG--He~D~ti~D 236 (432)
T TIGR00237 206 FNDEKVARAIFLSKIPIISAVG--HETDFTISD 236 (432)
T ss_pred cCcHHHHHHHHcCCCCEEEecC--cCCCccHHH
Confidence 5678888888777666665544 334444444
No 152
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=34.28 E-value=1.9e+02 Score=25.63 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=23.8
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCC-CCceEEEEecCCCC-CccHHHHHhCCCC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGS-VYGDVVVLVTNKPD-CGGAEYARDNSIP 132 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~-~~~eI~~Vvt~~~~-~~~~~~A~~~gIP 132 (294)
..||+|+ |.|.--.++...+.... ...+. .+++++.+ ....+++++.++.
T Consensus 4 ~~kI~iI--G~G~mg~ala~~l~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~ 55 (245)
T PRK07634 4 KHRILFI--GAGRMAEAIFSGLLKTSKEYIEE-IIVSNRSNVEKLDQLQARYNVS 55 (245)
T ss_pred CCeEEEE--CcCHHHHHHHHHHHhCCCCCcCe-EEEECCCCHHHHHHHHHHcCcE
Confidence 4678888 44444445555544321 22221 23444432 2344566666654
No 153
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=34.19 E-value=1.5e+02 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.248 Sum_probs=18.7
Q ss_pred HHHHHhcCCcEEEEeccccccChhHHh
Q 022631 152 VAALSEVNVDFILLAGYLKLIPMELIR 178 (294)
Q Consensus 152 ~~~L~~~~~DliV~agy~~ilp~~~l~ 178 (294)
+..+.+.+||++|+-|=+-=+|--++.
T Consensus 85 ~~il~r~rPdvii~nGpg~~vp~~~~~ 111 (170)
T PF08660_consen 85 LRILRRERPDVIISNGPGTCVPVCLAA 111 (170)
T ss_pred HHHHHHhCCCEEEEcCCceeeHHHHHH
Confidence 445567799999998876666554443
No 154
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.56 E-value=67 Score=29.58 Aligned_cols=50 Identities=28% Similarity=0.166 Sum_probs=34.7
Q ss_pred EEEeCCchHHHHHHHHHHcCCCC--ceEEEEecCCCCCccHHHHHhCCCCEEEcCC
Q 022631 85 VFVSGGGSNFRSIHAACLAGSVY--GDVVVLVTNKPDCGGAEYARDNSIPVILFPK 138 (294)
Q Consensus 85 Vl~SG~gs~l~~ll~~~~~~~~~--~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~ 138 (294)
|+.-|+||...-.++++.+ ... .++.+|-|... -..+|+++|||+...+.
T Consensus 23 viGlGTGST~~~fI~~Lg~-~~~~e~~i~~V~TS~~---t~~l~~~~GI~v~~l~~ 74 (227)
T COG0120 23 VIGLGTGSTAAYFIEALGR-RVKGELDIGGVPTSFQ---TEELARELGIPVSSLNE 74 (227)
T ss_pred EEEEcCcHHHHHHHHHHHH-hhccCccEEEEeCCHH---HHHHHHHcCCeecCccc
Confidence 5667899998888887753 111 35777766432 34789999999887654
No 155
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=33.38 E-value=1.6e+02 Score=29.11 Aligned_cols=70 Identities=23% Similarity=0.190 Sum_probs=40.9
Q ss_pred ceeEEEEEeCCchHHHHHHHHHH-cCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACL-AGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV 158 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~-~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~ 158 (294)
.+|+.|+ |.|...+.+.+... .+....++++++...++.. .-.|+|+.- +.+++.+.+++.
T Consensus 124 ~rrvLII--Gag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~-----~i~gvpVlG-----------~~~dl~~~v~~~ 185 (442)
T TIGR03013 124 KRRILVL--GTGPRAREIARLRRSSDRRGHEIVGFVPLPDEPA-----YVPSEHVIE-----------NGDGLVEYVLRH 185 (442)
T ss_pred CCcEEEE--ECCHHHHHHHHHHHhCccCCeEEEEEEcCCcccc-----ccCCCcccC-----------CHHHHHHHHHhC
Confidence 3555555 66677666633322 2344578899885432221 335666541 124677778888
Q ss_pred CCcEEEEec
Q 022631 159 NVDFILLAG 167 (294)
Q Consensus 159 ~~DliV~ag 167 (294)
++|-++++-
T Consensus 186 ~Id~ViIAl 194 (442)
T TIGR03013 186 RIDEIVIAL 194 (442)
T ss_pred CCCEEEEEC
Confidence 888887764
No 156
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=33.19 E-value=1.8e+02 Score=27.51 Aligned_cols=83 Identities=22% Similarity=0.246 Sum_probs=46.1
Q ss_pred ceeEEEEEeCCc-hHHHHHHHHHHcCCCCceEEEEecCCCCC------ccHHHHHhCCCCEEEcCCCCCC------CC--
Q 022631 80 KKNLAVFVSGGG-SNFRSIHAACLAGSVYGDVVVLVTNKPDC------GGAEYARDNSIPVILFPKTKDE------PN-- 144 (294)
Q Consensus 80 ~~rIaVl~SG~g-s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~------~~~~~A~~~gIP~~~~~~~~~~------~~-- 144 (294)
..|++|-+|||- |.+-+.+.....|+ ++++|-...|-. .+...|++.||.+.+++..... +.
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~lG~---~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~r 93 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEALGD---NVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMDPEFKENPENR 93 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHhcc---ceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcchhhccCCCCc
Confidence 349999999954 44444444333442 344443333321 3568899999997766532211 10
Q ss_pred -----CCChhHHHHHHHhcCCcEEEE
Q 022631 145 -----GLSPNDLVAALSEVNVDFILL 165 (294)
Q Consensus 145 -----~~~d~~l~~~L~~~~~DliV~ 165 (294)
..-.+.+.+...+.+.|+++-
T Consensus 94 CY~CK~~v~~~l~~~a~~~Gyd~V~d 119 (269)
T COG1606 94 CYLCKRAVYSTLVEEAEKRGYDVVAD 119 (269)
T ss_pred chHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 011334556666778888774
No 157
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=32.88 E-value=2.5e+02 Score=26.66 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=35.8
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCc
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVD 161 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~D 161 (294)
||.|+ |+|..-..++.+.++ +..+++++ ...++++...+|.+. +..+. .+.+.+.+.+++.++|
T Consensus 1 kilil--G~g~~~~~l~~aa~~--~G~~v~~~-d~~~~~~~~~~ad~~----~~~~~-------~d~~~l~~~~~~~~id 64 (380)
T TIGR01142 1 RVLLL--GSGELGKEVAIEAQR--LGVEVIAV-DRYANAPAMQVAHRS----YVINM-------LDGDALRAVIEREKPD 64 (380)
T ss_pred CEEEE--CCCHHHHHHHHHHHH--cCCEEEEE-eCCCCCchhhhCceE----EEcCC-------CCHHHHHHHHHHhCCC
Confidence 45555 666666666666543 23455444 334455555555421 22221 1235666777777888
Q ss_pred EEEE
Q 022631 162 FILL 165 (294)
Q Consensus 162 liV~ 165 (294)
+++.
T Consensus 65 ~v~~ 68 (380)
T TIGR01142 65 YIVP 68 (380)
T ss_pred EEEe
Confidence 7663
No 158
>PRK08462 biotin carboxylase; Validated
Probab=32.44 E-value=2e+02 Score=28.30 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=44.8
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC-CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD-CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV 158 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~-~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~ 158 (294)
++||.|+ |+|-.-..++.++++- ..++++|.++.+. ++..++|.+. +.++.......=.+-+.+++..++.
T Consensus 4 ~k~ili~--~~g~~~~~~~~~~~~~--G~~~v~~~~~~d~~~~~~~~ad~~----~~~~~~~~~~~y~~~~~l~~~~~~~ 75 (445)
T PRK08462 4 IKRILIA--NRGEIALRAIRTIQEM--GKEAIAIYSTADKDALYLKYADAK----ICIGGAKSSESYLNIPAIISAAEIF 75 (445)
T ss_pred CCEEEEE--CCcHHHHHHHHHHHHc--CCCEEEEechhhcCCchhhhCCEE----EEeCCCchhcccCCHHHHHHHHHHc
Confidence 5777777 5555555666766543 3567777665433 3445555542 2221111000002236788888888
Q ss_pred CCcEEEEeccc
Q 022631 159 NVDFILLAGYL 169 (294)
Q Consensus 159 ~~DliV~agy~ 169 (294)
++|.++. +++
T Consensus 76 ~~D~i~p-g~g 85 (445)
T PRK08462 76 EADAIFP-GYG 85 (445)
T ss_pred CCCEEEE-CCC
Confidence 9998774 454
No 159
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=32.42 E-value=2.7e+02 Score=25.68 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=56.9
Q ss_pred eeeeecCcccccCCCCcceeeecCCCCceeEEEEEeCCc---hHHHHHHHHHHcCCCCceEEEEecCCCCCcc----HHH
Q 022631 53 RLECVNFAEKVKNNGDKYEKDFDSGIKKKNLAVFVSGGG---SNFRSIHAACLAGSVYGDVVVLVTNKPDCGG----AEY 125 (294)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIaVl~SG~g---s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~----~~~ 125 (294)
.+-||+-+-|.. ...+.|++-.+. ..-+.|+.||.- -+..+....+... .+.+.+..++.++.+++ .+.
T Consensus 7 ~ik~GniGts~v-~dlllDErAdRe--di~vrVvgsgaKM~Pe~veaav~~~~e~-~~pDfvi~isPNpaaPGP~kARE~ 82 (277)
T COG1927 7 FIKCGNIGTSPV-VDLLLDERADRE--DIEVRVVGSGAKMDPECVEAAVTEMLEE-FNPDFVIYISPNPAAPGPKKAREI 82 (277)
T ss_pred EEEecccchHHH-HHHHHHhhcccC--CceEEEeccccccChHHHHHHHHHHHHh-cCCCEEEEeCCCCCCCCchHHHHH
Confidence 456888776632 223345543332 345566666522 2333333333322 24467778887766553 466
Q ss_pred HHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEe
Q 022631 126 ARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLA 166 (294)
Q Consensus 126 A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~a 166 (294)
-.+.++|++.+.... .-..-+.|++.+.-+|++-
T Consensus 83 l~~s~~PaiiigDaP-------g~~vkdeleeqGlGYIivk 116 (277)
T COG1927 83 LSDSDVPAIIIGDAP-------GLKVKDELEEQGLGYIIVK 116 (277)
T ss_pred HhhcCCCEEEecCCc-------cchhHHHHHhcCCeEEEec
Confidence 677899999887532 1234456677777666653
No 160
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=32.38 E-value=76 Score=30.73 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=35.3
Q ss_pred cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccC
Q 022631 122 GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIP 173 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp 173 (294)
+.+..++.|+.+..++...-+|....-++..+.+++.++|+||..|=|..+.
T Consensus 44 v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD 95 (375)
T cd08179 44 VEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSPID 95 (375)
T ss_pred HHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHH
Confidence 3455677899988776533233222234667778889999999999776663
No 161
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=32.29 E-value=1.3e+02 Score=29.20 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=39.5
Q ss_pred HHhcCCCCEEEEc--CCCCCC-CCCC---CCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEE
Q 022631 176 LIRAYPRSIVNIH--PSLLPA-FGGK---GYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILA 235 (294)
Q Consensus 176 ~l~~~~~g~iNiH--PSlLP~-yRG~---~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~ 235 (294)
++++.+++++|+- .|.+|. .+|+ +-+|...+-..|......+||.||.++.|+=.=+|..
T Consensus 152 Llr~arGRvVnvsS~~GR~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~ 217 (322)
T KOG1610|consen 152 LLRRARGRVVNVSSVLGRVALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN 217 (322)
T ss_pred HHHhccCeEEEecccccCccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC
Confidence 6677788999984 566666 4442 1223333444566778899999999998854444443
No 162
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.14 E-value=85 Score=24.21 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=29.3
Q ss_pred CceEEEEecCCCC----CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh
Q 022631 107 YGDVVVLVTNKPD----CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE 157 (294)
Q Consensus 107 ~~eI~~Vvt~~~~----~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~ 157 (294)
..+++.|+|+--. -.+++.|++.|+|++...... -..+.+.|++
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~-------~~~l~~~l~~ 95 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRG-------VSSLERALER 95 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCC-------HHHHHHHHHh
Confidence 3578888886543 136799999999999875322 2456565554
No 163
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=32.07 E-value=2.7e+02 Score=22.40 Aligned_cols=57 Identities=21% Similarity=0.167 Sum_probs=31.0
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC-C-----ccHHHHHhCCCCEEEcCC
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD-C-----GGAEYARDNSIPVILFPK 138 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~-~-----~~~~~A~~~gIP~~~~~~ 138 (294)
+|+|-+|||--....+...........++.+|..+... . .+.++|++.|+++..+..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~ 63 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRP 63 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECC
Confidence 57888888653332222222211100245555555322 1 256889999999987754
No 164
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.03 E-value=1.1e+02 Score=28.08 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=34.3
Q ss_pred CceeEEEEEeCCchHHHHHHHH-HHcCCCCceEEEEecCCCCCccHHHHHhCCCCEE
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAA-CLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVI 134 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~-~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~ 134 (294)
.|.|++++.||+=+. .|+.+ ++.|+ ..|..+.|--.+...++.+|.++|++..
T Consensus 3 sk~kvaiigsgni~t--dlm~k~lr~g~-~le~~~mvgidp~sdglaraarlgv~tt 56 (310)
T COG4569 3 SKRKVAIIGSGNIGT--DLMIKILRHGQ-HLEMAVMVGIDPQSDGLARAARLGVATT 56 (310)
T ss_pred CcceEEEEccCcccH--HHHHHHHhcCC-cccceeEEccCCCccHHHHHHhcCCcch
Confidence 478999998884322 22223 33333 3455566655677778899999999864
No 165
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=31.92 E-value=1.8e+02 Score=28.12 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=38.0
Q ss_pred eEEEEecCCC--CCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc---CCcEEEEecccccc
Q 022631 109 DVVVLVTNKP--DCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV---NVDFILLAGYLKLI 172 (294)
Q Consensus 109 eI~~Vvt~~~--~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~---~~DliV~agy~~il 172 (294)
+.++|||++. +..+.+..++.|+.+..++...-+|....-++..+..++. ++|.||..|=+..+
T Consensus 26 ~~~lvvtd~~~~~~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~i 94 (347)
T cd08184 26 DPAVFFVDDVFQGKDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGSTL 94 (347)
T ss_pred CeEEEEECcchhhhHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHH
Confidence 3456667542 1234555667789877765433233221223555666766 89999998876655
No 166
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=31.52 E-value=1.9e+02 Score=28.41 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEec-CCCCCccHH----HHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEE
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVT-NKPDCGGAE----YARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFI 163 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt-~~~~~~~~~----~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dli 163 (294)
|.|+.+..|..+...|+ .+.++++ .+|...+.+ ...+.|||+..+. |..+-..+.+.++|.+
T Consensus 176 ~~gTal~vi~~A~~~gk---~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~----------Dsav~~~M~~~~Vd~V 242 (356)
T PRK08334 176 HLGTVGAVLRVMHKDGT---LKLLWVDETRPVLQGARLSAWEYHYDGIPLKLIS----------DNMAGFVMQQGKVDAI 242 (356)
T ss_pred ccchHHHHHHHHHHcCC---eEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEe----------hhHHHHHhhhcCCCEE
Confidence 35677888877776663 3444454 344433332 3467899998875 3455556666789998
Q ss_pred EEecccccc
Q 022631 164 LLAGYLKLI 172 (294)
Q Consensus 164 V~agy~~il 172 (294)
|+. --++.
T Consensus 243 ivG-Ad~I~ 250 (356)
T PRK08334 243 IVG-ADRIV 250 (356)
T ss_pred EEC-ccEEe
Confidence 864 33444
No 167
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=31.37 E-value=1.8e+02 Score=26.87 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=36.3
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN 159 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~ 159 (294)
++||.|+..|++. .++.+++.-....+|+++=++ +.++....|.+ ++.++... ...+-+.+.+.+++.+
T Consensus 1 ~~~vLv~g~~~~~---~~~~~l~~~~~g~~vi~~d~~-~~~~~~~~~d~----~~~~p~~~---~~~~~~~l~~~~~~~~ 69 (326)
T PRK12767 1 MMNILVTSAGRRV---QLVKALKKSLLKGRVIGADIS-ELAPALYFADK----FYVVPKVT---DPNYIDRLLDICKKEK 69 (326)
T ss_pred CceEEEecCCccH---HHHHHHHHhccCCEEEEECCC-CcchhhHhccC----cEecCCCC---ChhHHHHHHHHHHHhC
Confidence 3566666554443 555554432112344443222 33444444432 22233211 1112356777888889
Q ss_pred CcEEEEe
Q 022631 160 VDFILLA 166 (294)
Q Consensus 160 ~DliV~a 166 (294)
+|+++..
T Consensus 70 id~ii~~ 76 (326)
T PRK12767 70 IDLLIPL 76 (326)
T ss_pred CCEEEEC
Confidence 9987753
No 168
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=31.35 E-value=82 Score=30.31 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=41.0
Q ss_pred EEEEecCCCC---Cc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccC
Q 022631 110 VVVLVTNKPD---CG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIP 173 (294)
Q Consensus 110 I~~Vvt~~~~---~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp 173 (294)
=++|||++.- .+ +.+..++.|+.+..++...-++.-..-.+..+.+++.++|+||..|=+..+.
T Consensus 27 r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD 97 (357)
T cd08181 27 RALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLD 97 (357)
T ss_pred EEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHH
Confidence 4567776532 22 3455667889887776433233222234667778899999999999776653
No 169
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=31.31 E-value=1.8e+02 Score=28.66 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=54.6
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCC-CCCccHHHHHhCC-CCEEEcCCCCCCCCCCChhHHHHHHH
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNK-PDCGGAEYARDNS-IPVILFPKTKDEPNGLSPNDLVAALS 156 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~-~~~~~~~~A~~~g-IP~~~~~~~~~~~~~~~d~~l~~~L~ 156 (294)
..+|++|+ +++...-.+...+ ..++-.+++++.+.. ......+..++.. .+++. +. .++-++.+.++
T Consensus 287 ~Gk~vai~--~~~~~~~~la~~l-~~elG~~v~~i~~~~~~~~~~~~~~~~~~~~~~~v-~d-------~~~~e~~~~~~ 355 (415)
T cd01977 287 KGKKVCIW--TGGPKLWHWTKVI-EDELGMQVVAMSSKFGHQEDFEKVIARGGEGTIYI-DD-------PNELEFFEILE 355 (415)
T ss_pred CCCEEEEE--CCCchHHHHHHHH-HHhcCCEEEEEEEEeccHHHHHHHHHhcCCceEEE-eC-------CCHHHHHHHHH
Confidence 46888886 2223333333332 223446787776642 1111222223222 33332 21 13456777788
Q ss_pred hcCCcEEEEeccccccChhHHhcCCCCEEEEcCCC---CCCCCCC
Q 022631 157 EVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSL---LPAFGGK 198 (294)
Q Consensus 157 ~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSl---LP~yRG~ 198 (294)
+.+||++|--.+.+.+-.+ ..-.++.+++.. .=.|||.
T Consensus 356 ~~~pdliig~s~~~~~a~~----lgip~~~~~~~~~~~~~Gy~G~ 396 (415)
T cd01977 356 MLKPDIILTGPRVGELVKK----LHVPYVNIHAYHNGPYMGFEGF 396 (415)
T ss_pred hcCCCEEEecCccchhhhh----cCCCEEeccCCcCCCccchhhH
Confidence 9999999988777755443 233467776543 2256774
No 170
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=31.18 E-value=2.9e+02 Score=26.29 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=44.1
Q ss_pred eeEEEEEeCCc--hHHHHHHHHHHcCCCCceEEEEecCCCC------CccHHHHHhCCCCEEEcCCCCC-----CCCC--
Q 022631 81 KNLAVFVSGGG--SNFRSIHAACLAGSVYGDVVVLVTNKPD------CGGAEYARDNSIPVILFPKTKD-----EPNG-- 145 (294)
Q Consensus 81 ~rIaVl~SG~g--s~l~~ll~~~~~~~~~~eI~~Vvt~~~~------~~~~~~A~~~gIP~~~~~~~~~-----~~~~-- 145 (294)
.+++|.+|||- +.+..|+.....+ .+.++.+|..+... ....++|++.|++++++..... .+..
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~-~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~~~i~~g~~~~~~~ 106 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYP-GKLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNPEGIARGINPFRHG 106 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcc-cCCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeChHHHhcCCCCCCCC
Confidence 37899999965 3334444333222 11233344333221 1245889999999887632110 0000
Q ss_pred -------CChhHHHHHHHhcCCcEEEE
Q 022631 146 -------LSPNDLVAALSEVNVDFILL 165 (294)
Q Consensus 146 -------~~d~~l~~~L~~~~~DliV~ 165 (294)
..-..+.++++++++|.++.
T Consensus 107 ~~~cC~~lK~~pL~~al~e~g~da~~~ 133 (301)
T PRK05253 107 SAKHTNAMKTEGLKQALEKYGFDAAFG 133 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 01134567778889997664
No 171
>PRK05586 biotin carboxylase; Validated
Probab=31.09 E-value=1.6e+02 Score=29.11 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=41.8
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecC-CCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTN-KPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV 158 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~-~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~ 158 (294)
.+||.|+ |+|-.-..++.++++- ..++++|.++ ..+++...+|.+. +.++.......=.+-+.+++..+..
T Consensus 2 ~kkvli~--g~G~~~~~~~~aa~~l--G~~~v~v~~~~d~~a~~~~~aD~~----~~~~~~~~~~~y~~~~~i~~~~~~~ 73 (447)
T PRK05586 2 FKKILIA--NRGEIAVRIIRACREM--GIETVAVYSEADKDALHVQLADEA----VCIGPASSKDSYLNIQNIISATVLT 73 (447)
T ss_pred cceEEEE--CCcHHHHHHHHHHHHc--CCcEEEEcChHhccCcchhhCCEE----EEeCCCChhhcccCHHHHHHHHHHc
Confidence 4677777 6777777777776643 4567777665 3344544455432 1111110000001224677777778
Q ss_pred CCcEEE
Q 022631 159 NVDFIL 164 (294)
Q Consensus 159 ~~DliV 164 (294)
++|.++
T Consensus 74 ~~d~i~ 79 (447)
T PRK05586 74 GAQAIH 79 (447)
T ss_pred CCCEEE
Confidence 888766
No 172
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=30.84 E-value=2.6e+02 Score=23.33 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=39.8
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC------CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHH
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD------CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAAL 155 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~------~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L 155 (294)
|++|++|||--..-.+......+ .++.++..+... ..+.++|++.| |...++... ......+.+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~----~~~~~~l~~~a 72 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEG---YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPARN----LIFLSIAAAYA 72 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcC---CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCcC----HHHHHHHHHHH
Confidence 68899999664433333333333 356665554321 12457888888 655443211 00111222333
Q ss_pred HhcCCcEEEEe
Q 022631 156 SEVNVDFILLA 166 (294)
Q Consensus 156 ~~~~~DliV~a 166 (294)
++.++|.+++.
T Consensus 73 ~~~g~~~i~~G 83 (169)
T cd01995 73 EALGAEAIIIG 83 (169)
T ss_pred HHCCCCEEEEe
Confidence 56788887754
No 173
>PRK06683 hypothetical protein; Provisional
Probab=30.74 E-value=1.1e+02 Score=23.49 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=25.4
Q ss_pred HHHHHHcCCCCceEEEEecCCCCC---ccHHHHHhCCCCEEEcC
Q 022631 97 IHAACLAGSVYGDVVVLVTNKPDC---GGAEYARDNSIPVILFP 137 (294)
Q Consensus 97 ll~~~~~~~~~~eI~~Vvt~~~~~---~~~~~A~~~gIP~~~~~ 137 (294)
.+++++.| ..+.+.|-.|-++. .+.++|+..+||++.++
T Consensus 19 v~kaik~g--kaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 19 TLEAIKNG--IVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred HHHHHHcC--CeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 34456666 34566555554432 35688999999998876
No 174
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=30.65 E-value=78 Score=29.90 Aligned_cols=79 Identities=15% Similarity=0.058 Sum_probs=41.9
Q ss_pred hHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCC-----------CCCCCCCCcchHHHHHHHcCCCEE
Q 022631 149 NDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLP-----------AFGGKGYYGMKVHKAVIASGARYS 217 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP-----------~yRG~~~yg~pv~~~aI~~G~~~t 217 (294)
+++-+.+++.+||++|+++--+ ...-+.+..+.-+|+.-+.+-| .|+|.. .+-+ .|.+.....
T Consensus 38 ~~i~~~i~~~~PDvvVii~~dH-~~~f~~d~~P~f~Ig~~~~~~~~~~~~g~~~v~~~~g~~----eLA~-~i~~~l~~~ 111 (284)
T PRK13366 38 EFSKQWEKEEKPDVIFLVYNDH-ATAFSLDIIPTFAIGTAAEYQPADEGWGPRPVPKVIGHP----DLAA-HIAQSVIQD 111 (284)
T ss_pred HHHHHHHHHhCCCEEEEEcCCc-HHhhcccCCCceEEeeCceecCcccccCCCCCCCCCCCH----HHHH-HHHHHHHHC
Confidence 4677888999999999874333 1111222333334555554433 334421 1223 354444555
Q ss_pred EEEEEEec-CCCCCCce
Q 022631 218 GPTIHFVD-EHYDTGRI 233 (294)
Q Consensus 218 GvTvH~v~-~~~D~G~I 233 (294)
|+.+-..+ -++|.|-.
T Consensus 112 g~~~~~~~~~~lDHG~~ 128 (284)
T PRK13366 112 DFDLTIVNKMDVDHGLT 128 (284)
T ss_pred CCCEeecCCCCCCccHH
Confidence 66555544 46787753
No 175
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=30.48 E-value=36 Score=30.08 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=32.7
Q ss_pred eEEEEEeCCc-hHHHHHHHHHHcCCCCceEEEEecCC----CCCccHHHHHhCCCCEEEcC
Q 022631 82 NLAVFVSGGG-SNFRSIHAACLAGSVYGDVVVLVTNK----PDCGGAEYARDNSIPVILFP 137 (294)
Q Consensus 82 rIaVl~SG~g-s~l~~ll~~~~~~~~~~eI~~Vvt~~----~~~~~~~~A~~~gIP~~~~~ 137 (294)
++.||+|||- |.+.+++..- +..++.+|-+|= ......+-|...|.|.-++.
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~k----lgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~ 58 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDK----LGYEVELVTVNFGVLDSWKYARETAAILGFPHEVLQ 58 (198)
T ss_pred ceEEEecCCCchhHHHHHHHH----hCCCcEEEEEEeccccchhhHHHHHHHhCCCcceec
Confidence 5778999854 7777765531 234555554442 23456678889999976653
No 176
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=30.41 E-value=1.4e+02 Score=25.83 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=30.2
Q ss_pred EEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCC------ccHHHHHhCCCCEEEcCC
Q 022631 83 LAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDC------GGAEYARDNSIPVILFPK 138 (294)
Q Consensus 83 IaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~------~~~~~A~~~gIP~~~~~~ 138 (294)
|+|.+|||--..-.+......+. .++.+|-.+.... .+.++|++.|||++.++-
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~--~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~ 60 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG--DRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIET 60 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC--CcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 56888886533222222222221 1566655443321 256889999999988753
No 177
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.93 E-value=1.7e+02 Score=24.62 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=31.6
Q ss_pred EEEEecCCCCC---------ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc
Q 022631 110 VVVLVTNKPDC---------GGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV 158 (294)
Q Consensus 110 I~~Vvt~~~~~---------~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~ 158 (294)
...||+|+|+. ...+.|++.|+.+..++-......+.+-+.+.+.|.+.
T Consensus 29 FksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~ea 86 (130)
T COG3453 29 FKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEA 86 (130)
T ss_pred cceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHh
Confidence 56799999863 24689999999998888654332222223445555543
No 178
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.89 E-value=2.7e+02 Score=27.57 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=33.5
Q ss_pred hhHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCC--C--CCCCC
Q 022631 148 PNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLL--P--AFGGK 198 (294)
Q Consensus 148 d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlL--P--~yRG~ 198 (294)
..++.+.+++.+||+++--.+.+.+.. +..-.++.+|..-+ | .|+|.
T Consensus 358 ~~e~~~~i~~~~pDliig~~~~~~~a~----k~giP~~~~~~~~~~~~~~Gy~G~ 408 (421)
T cd01976 358 HYELEEFVKRLKPDLIGSGIKEKYVFQ----KMGIPFRQMHSWDYSGPYHGFDGF 408 (421)
T ss_pred HHHHHHHHHHhCCCEEEecCcchhhhh----hcCCCeEeCCccccCCCccchhhH
Confidence 467888899999999997777665543 33445788886654 5 67774
No 179
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=29.81 E-value=3.8e+02 Score=23.46 Aligned_cols=82 Identities=17% Similarity=0.061 Sum_probs=44.1
Q ss_pred eEEEEEeCCc---hHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCC----ChhHHHHH
Q 022631 82 NLAVFVSGGG---SNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGL----SPNDLVAA 154 (294)
Q Consensus 82 rIaVl~SG~g---s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~----~d~~l~~~ 154 (294)
||.++....| ..+..+.+.+... .++|..+.+...... .....|+.++.++......... .-..+.+.
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~--g~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAA--GYEVHVVAPPGDELE---ELEALGVKVIPIPLDRRGINPFKDLKALLRLYRL 75 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhc--CCeeEEEecCCCccc---ccccCCceEEeccccccccChHhHHHHHHHHHHH
Confidence 4555555422 3355566665332 356665544433221 4567788887776432100000 11245667
Q ss_pred HHhcCCcEEEEecc
Q 022631 155 LSEVNVDFILLAGY 168 (294)
Q Consensus 155 L~~~~~DliV~agy 168 (294)
+++.++|++++...
T Consensus 76 ~~~~~~dvv~~~~~ 89 (359)
T cd03808 76 LRKERPDIVHTHTP 89 (359)
T ss_pred HHhcCCCEEEEccc
Confidence 78899999987654
No 180
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=29.69 E-value=41 Score=27.71 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=20.5
Q ss_pred CceEEEEecCCCCCc----cHHHHHhCCCCEEEc
Q 022631 107 YGDVVVLVTNKPDCG----GAEYARDNSIPVILF 136 (294)
Q Consensus 107 ~~eI~~Vvt~~~~~~----~~~~A~~~gIP~~~~ 136 (294)
+++++.++++.-..+ ..++|++.|+.++-+
T Consensus 103 ~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 103 PGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 568999999865432 468999999988753
No 181
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.64 E-value=2.5e+02 Score=29.08 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHcCCCCceEEEEecCCCCCc-------------------------------------cHHHHHhCCCCE
Q 022631 91 GSNFRSIHAACLAGSVYGDVVVLVTNKPDCG-------------------------------------GAEYARDNSIPV 133 (294)
Q Consensus 91 gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~-------------------------------------~~~~A~~~gIP~ 133 (294)
.|||..|...++++ ++.|..+.|+.=.++ ..++|+..|..+
T Consensus 392 STNLAKIayWLlqN--kfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDV 469 (587)
T KOG0781|consen 392 STNLAKIAYWLLQN--KFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDV 469 (587)
T ss_pred cchHHHHHHHHHhC--CceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCE
Confidence 38888887777665 456766666642111 247888899998
Q ss_pred EEcCCCCCCCCCCChhHH----HHHHHhcCCcEEEEeccccccChhHHh
Q 022631 134 ILFPKTKDEPNGLSPNDL----VAALSEVNVDFILLAGYLKLIPMELIR 178 (294)
Q Consensus 134 ~~~~~~~~~~~~~~d~~l----~~~L~~~~~DliV~agy~~ilp~~~l~ 178 (294)
+.++.+. |--+++.+ .+.++...||+|+.+|= -++..+-++
T Consensus 470 vLiDTAG---R~~~~~~lm~~l~k~~~~~~pd~i~~vge-alvg~dsv~ 514 (587)
T KOG0781|consen 470 VLIDTAG---RMHNNAPLMTSLAKLIKVNKPDLILFVGE-ALVGNDSVD 514 (587)
T ss_pred EEEeccc---cccCChhHHHHHHHHHhcCCCceEEEehh-hhhCcHHHH
Confidence 8888653 11233333 34445568999998875 344444444
No 182
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=29.57 E-value=54 Score=30.64 Aligned_cols=65 Identities=22% Similarity=0.216 Sum_probs=35.9
Q ss_pred HHHHhCCCCEEEcCCC-CCCCCCCChhHHHHHHHhcCCcEEEEeccccccC-----hhHHhcCCCCEEEEcC
Q 022631 124 EYARDNSIPVILFPKT-KDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIP-----MELIRAYPRSIVNIHP 189 (294)
Q Consensus 124 ~~A~~~gIP~~~~~~~-~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp-----~~~l~~~~~g~iNiHP 189 (294)
++|.+.+|.+..+.+. +..++. -++.....+++|+||++|..+=---+| .++|......+|-|--
T Consensus 25 ErAdRedI~vrv~gsGaKm~pe~-~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D 95 (277)
T PRK00994 25 ERADREDIDVRVVGSGAKMGPEE-VEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGD 95 (277)
T ss_pred hhhcccCceEEEeccCCCCCHHH-HHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcC
Confidence 4566667777666542 222211 112233456899999999876543443 2455555445666543
No 183
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.91 E-value=1.9e+02 Score=28.41 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=41.7
Q ss_pred CCceeEEEEEeCCchHHHHHHHHH-HcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHH
Q 022631 78 IKKKNLAVFVSGGGSNFRSIHAAC-LAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALS 156 (294)
Q Consensus 78 ~~~~rIaVl~SG~gs~l~~ll~~~-~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~ 156 (294)
....|++++.-| .--+....+. ...+.+++|++|.+. .--..+++|+++++| ..+.+. ..-+.++
T Consensus 4 s~~ir~Gi~g~g--~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~fAq~~~~~----~~k~y~-------syEeLak 69 (351)
T KOG2741|consen 4 SATIRWGIVGAG--RIARDFVRALHTLPESNHQIVAVADP-SLERAKEFAQRHNIP----NPKAYG-------SYEELAK 69 (351)
T ss_pred CceeEEEEeehh--HHHHHHHHHhccCcccCcEEEEEecc-cHHHHHHHHHhcCCC----CCcccc-------CHHHHhc
Confidence 346789988444 2222222221 122347899999875 333467999999997 111111 1223456
Q ss_pred hcCCcEEEEe
Q 022631 157 EVNVDFILLA 166 (294)
Q Consensus 157 ~~~~DliV~a 166 (294)
.-.+|++++.
T Consensus 70 d~~vDvVyi~ 79 (351)
T KOG2741|consen 70 DPEVDVVYIS 79 (351)
T ss_pred CCCcCEEEeC
Confidence 6677876643
No 184
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=28.89 E-value=80 Score=25.58 Aligned_cols=38 Identities=11% Similarity=0.001 Sum_probs=22.4
Q ss_pred CCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEec
Q 022631 119 DCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAG 167 (294)
Q Consensus 119 ~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~ag 167 (294)
+....+..+++||++--.. ++.+.+.. -..+|+||...
T Consensus 42 ~p~a~~~l~e~Gid~~~~~-----s~~l~~~~------~~~~D~iitm~ 79 (126)
T TIGR02689 42 HPTAIEVMSEIGIDISGQT-----SKPLENFH------PEDYDVVISLC 79 (126)
T ss_pred CHHHHHHHHHhCCCcccCc-----cccCChhH------hcCCCEEEEeC
Confidence 3446788889999974221 22232221 23789999873
No 185
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=28.85 E-value=2.7e+02 Score=21.36 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=27.9
Q ss_pred HHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEecc
Q 022631 123 AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGY 168 (294)
Q Consensus 123 ~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy 168 (294)
.+.+.+.|+++........ .-.+++.+..++.++|++|+..-
T Consensus 62 ~~~~~~~g~~~~~~~~~~~----~~~~~I~~~a~~~~~dlIV~G~~ 103 (132)
T cd01988 62 ERIAASLGVPVHTIIRIDH----DIASGILRTAKERQADLIIMGWH 103 (132)
T ss_pred HHHhhhcCCceEEEEEecC----CHHHHHHHHHHhcCCCEEEEecC
Confidence 4566778988654431110 11367888889999999997654
No 186
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.81 E-value=1e+02 Score=28.34 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=26.6
Q ss_pred CCceeEEEEEeCCch-------HHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEE
Q 022631 78 IKKKNLAVFVSGGGS-------NFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVIL 135 (294)
Q Consensus 78 ~~~~rIaVl~SG~gs-------~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~ 135 (294)
.+++||+|++.|... ..+.+.+++.+- .+++..|-.+. ...+...+.++.++.
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~--g~~v~~i~~~~---~~~~~~~~~~~D~v~ 61 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREA--GYDAHPIDPGE---DIAAQLKELGFDRVF 61 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHC--CCEEEEEecCc---chHHHhccCCCCEEE
Confidence 356789988755321 124555565442 44555553332 233444455665544
No 187
>PRK13820 argininosuccinate synthase; Provisional
Probab=28.78 E-value=1.8e+02 Score=28.81 Aligned_cols=87 Identities=15% Similarity=0.046 Sum_probs=51.8
Q ss_pred ceeEEEEEeCCc--hHHHHHHHHHHcCCCCc-eEEEEecCCCC-----CccHHHHHhCCCCEEEcCCCC-CC--------
Q 022631 80 KKNLAVFVSGGG--SNFRSIHAACLAGSVYG-DVVVLVTNKPD-----CGGAEYARDNSIPVILFPKTK-DE-------- 142 (294)
Q Consensus 80 ~~rIaVl~SG~g--s~l~~ll~~~~~~~~~~-eI~~Vvt~~~~-----~~~~~~A~~~gIP~~~~~~~~-~~-------- 142 (294)
..||+|.+|||- +.+..++. . .... ++.+|..+... ..+.++|++.|||++.++-.. +.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~---e-~~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i 77 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLK---E-KYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAI 77 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHH---H-hcCCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHH
Confidence 468999999964 22222221 1 1233 67777665432 135689999999998876531 21
Q ss_pred -----CCC----------CChhHHHHHHHhcCCcEEEEecccc
Q 022631 143 -----PNG----------LSPNDLVAALSEVNVDFILLAGYLK 170 (294)
Q Consensus 143 -----~~~----------~~d~~l~~~L~~~~~DliV~agy~~ 170 (294)
.+. +--..+.+..++.+.|.|....+++
T Consensus 78 ~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 78 KANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 011 0112455666788999888777654
No 188
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=28.76 E-value=1.5e+02 Score=25.99 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=28.1
Q ss_pred ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEE
Q 022631 121 GGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILL 165 (294)
Q Consensus 121 ~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~ 165 (294)
...+.++++|+++..+. .++.+..+.+.+.++|.++.
T Consensus 190 ~~v~~~~~~g~~v~~wT--------vn~~~~~~~~~~~gVdgiiT 226 (229)
T cd08562 190 EQVKALKDAGYKLLVYT--------VNDPARAAELLEWGVDAIFT 226 (229)
T ss_pred HHHHHHHHCCCEEEEEe--------CCCHHHHHHHHHCCCCEEEc
Confidence 45688999999998774 23456677778889998875
No 189
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=28.46 E-value=1.6e+02 Score=27.08 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=36.1
Q ss_pred EEEEeCCchH-HHHHHHHHHcCCCCceEEEEecCCCCCcc---HHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcC
Q 022631 84 AVFVSGGGSN-FRSIHAACLAGSVYGDVVVLVTNKPDCGG---AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN 159 (294)
Q Consensus 84 aVl~SG~gs~-l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~---~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~ 159 (294)
.||.-|..+. .+.|..+...|+ +++|. |+=.+|...+ .+...+.||++..++ |..+...++. .
T Consensus 110 ~ILT~~~S~~v~~~l~~a~~~~~-~~~V~-v~es~P~~eG~~~a~~L~~~gi~v~~i~----------d~~~~~~m~~-~ 176 (282)
T PF01008_consen 110 TILTHGYSSTVERFLLSAKKKGK-KFRVI-VLESRPYNEGRLMAKELAEAGIPVTLIP----------DSAVGYVMPR-D 176 (282)
T ss_dssp EEEEES--SHHHHHHHHHHHTTE-EEEEE-EE--TTTTHHHTHHHHHHHTT-EEEEE-----------GGGHHHHHHC-T
T ss_pred EEEEeCCchHHHHHHHHHHHcCC-eEEEE-EccCCcchhhhhHHHHhhhcceeEEEEe----------chHHHHHHHH-h
Confidence 4444454444 555555444442 44543 3333444333 244455799998875 3456666666 7
Q ss_pred CcEEEEecc
Q 022631 160 VDFILLAGY 168 (294)
Q Consensus 160 ~DliV~agy 168 (294)
+|.+++..-
T Consensus 177 vd~VliGad 185 (282)
T PF01008_consen 177 VDKVLIGAD 185 (282)
T ss_dssp ESEEEEE-S
T ss_pred CCeeEEeee
Confidence 888886654
No 190
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=28.34 E-value=2.8e+02 Score=27.38 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=54.2
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCcc-HHHHHh--CCCCEEEcCCCCCCCCCCChhHHHHHH
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGG-AEYARD--NSIPVILFPKTKDEPNGLSPNDLVAAL 155 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~-~~~A~~--~gIP~~~~~~~~~~~~~~~d~~l~~~L 155 (294)
..+|++|+ |.+.-.-.+...+. .++-.+++.+.|....... .+..+. .++.++ +. .+-.++.+.+
T Consensus 289 ~Gkrvai~--g~~~~~~~la~~L~-eelGm~~v~v~t~~~~~~~~~~~~~~l~~~~~v~--~~-------~D~~~l~~~i 356 (427)
T PRK02842 289 RGKRVFFL--PDSQLEIPLARFLS-RECGMELVEVGTPYLNRRFLAAELALLPDGVRIV--EG-------QDVERQLDRI 356 (427)
T ss_pred CCcEEEEE--CCchhHHHHHHHHH-HhCCCEEEEeCCCCCCHHHHHHHHHhccCCCEEE--EC-------CCHHHHHHHH
Confidence 45787776 33332333333332 2234678888775443221 111111 244332 21 1245778889
Q ss_pred HhcCCcEEEEeccccccChhHHh-cCC-CCEEEEcCCCCCCCCCCC
Q 022631 156 SEVNVDFILLAGYLKLIPMELIR-AYP-RSIVNIHPSLLPAFGGKG 199 (294)
Q Consensus 156 ~~~~~DliV~agy~~ilp~~~l~-~~~-~g~iNiHPSlLP~yRG~~ 199 (294)
++.+||++|--.... +| +++ -|+ .--++.|...+=.|+|+.
T Consensus 357 ~~~~pDllig~~~~~-~p--l~r~GfP~~dr~~~~~~p~~Gy~G~~ 399 (427)
T PRK02842 357 RALRPDLVVCGLGLA-NP--LEAEGITTKWSIEFVFTPIHGFEQAG 399 (427)
T ss_pred HHcCCCEEEccCccC-Cc--hhhcCCceeEEEeeeeecccchhhHH
Confidence 999999999654322 22 222 122 233666666666788853
No 191
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=27.97 E-value=96 Score=26.21 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=32.5
Q ss_pred ceeEEEEEeCCchHHHHHHHH------HHcC---CCCceEEEEecCCCCCccHHHHHhCCCCEEEcCC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAA------CLAG---SVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPK 138 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~------~~~~---~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~ 138 (294)
+.-++|.+|.+|++.+.+... +... ..... ..+||+ ++.+..++|..++.+++.++.
T Consensus 73 ~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~-~vaiT~-~~s~l~~~a~~~~~~~~~~~~ 138 (158)
T cd05015 73 ETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKH-FVAITD-NGSGLLKKAGIEGLNTFEIPD 138 (158)
T ss_pred ccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccce-EEEEcC-CChHHHHHcCCCcceeeeCCC
Confidence 456788888888765543221 1111 01223 346676 344555557888888877653
No 192
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=27.71 E-value=96 Score=29.46 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=62.7
Q ss_pred HHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccCh--h------------HHhcCC-CCEEEE
Q 022631 123 AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPM--E------------LIRAYP-RSIVNI 187 (294)
Q Consensus 123 ~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp~--~------------~l~~~~-~g~iNi 187 (294)
++.=++.|||++-+-- ++..-.+.+.+.|++++||++|+.|---++.. + |++.-+ -+-..=
T Consensus 121 l~~Ykql~i~a~G~~~----~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~ 196 (283)
T TIGR02855 121 LKLYKKIGVPVVGIHC----KEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVP 196 (283)
T ss_pred HHHHHHhCCceEEEEe----cchhchHHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCC
Confidence 4666889999764421 12233578889999999999999997655431 1 111111 011222
Q ss_pred cCCCCCCCCCCCCCcchHHHHHHHcCCCE----EEEEEEEecCCCCCCceEEEEEEeCCCCC
Q 022631 188 HPSLLPAFGGKGYYGMKVHKAVIASGARY----SGPTIHFVDEHYDTGRILAQRVVPVLWND 245 (294)
Q Consensus 188 HPSlLP~yRG~~~yg~pv~~~aI~~G~~~----tGvTvH~v~~~~D~G~II~Q~~~~I~~~d 245 (294)
|.--|=-|-|+.. .=+.+.|..|... .-+-||-+| |+..-+++...+-+
T Consensus 197 ~~D~LVIFAGACQ---S~yEall~AGANFASSP~RVlIHalD------PV~i~eKia~T~i~ 249 (283)
T TIGR02855 197 SLDQLVIFAGACQ---SHFESLIRAGANFASSPSRVNIHALD------PVYIVEKISFTPFM 249 (283)
T ss_pred CcccEEEEcchhH---HHHHHHHHcCccccCCccceEEeccC------cceeEEeeeecccc
Confidence 3333445677641 1234456667544 457788776 55666666554433
No 193
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=27.63 E-value=2.6e+02 Score=27.48 Aligned_cols=105 Identities=10% Similarity=-0.013 Sum_probs=54.6
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCcc-HHHHHhC--CCCEEEcCCCCCCCCCCChhHHHHHH
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGG-AEYARDN--SIPVILFPKTKDEPNGLSPNDLVAAL 155 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~-~~~A~~~--gIP~~~~~~~~~~~~~~~d~~l~~~L 155 (294)
..+|++|+ |.+...-.+...+.+ +-.+++.+.|....... .+..+.. +..+ ++. .+-.++.+.+
T Consensus 273 ~Gkrv~i~--gd~~~~~~l~~~L~e--lGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v--~~~-------~d~~~l~~~i 339 (407)
T TIGR01279 273 RGKKIFFF--GDNLLELPLARFLKR--CGMEVVECGTPYIHRRFHAAELALLEGGVRI--VEQ-------PDFHRQLQRI 339 (407)
T ss_pred CCCEEEEE--CCchHHHHHHHHHHH--CCCEEEEecCCCCChHHHHHHHhhcCCCCeE--EeC-------CCHHHHHHHH
Confidence 46787776 334333344444432 45678888876543221 1111111 3322 221 1345777888
Q ss_pred HhcCCcEEEEeccccccChhHHhc-CC-CCEEEEcCCCCCCCCCCC
Q 022631 156 SEVNVDFILLAGYLKLIPMELIRA-YP-RSIVNIHPSLLPAFGGKG 199 (294)
Q Consensus 156 ~~~~~DliV~agy~~ilp~~~l~~-~~-~g~iNiHPSlLP~yRG~~ 199 (294)
++.+||++|.-.. +.-.+++. || .--++.|...+=.|+|+.
T Consensus 340 ~~~~pDllig~~~---~~~pl~r~GfP~~dr~~~~~~p~~Gy~Ga~ 382 (407)
T TIGR01279 340 RATRPDLVVTGLG---TANPLEAQGFTTKWSIEFTFAQIHGFDNAA 382 (407)
T ss_pred HhcCCCEEecCcc---CCCcHhhCCcceeEeeceEEEcccCHHHHH
Confidence 9999999996542 22223321 22 233555556666788854
No 194
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=27.53 E-value=1.3e+02 Score=24.22 Aligned_cols=45 Identities=31% Similarity=0.363 Sum_probs=29.1
Q ss_pred cHHHHHhCCCCEEEcCCCCCC-C-C-CC--------ChhHHHHHHHhcCCcEEEEecc
Q 022631 122 GAEYARDNSIPVILFPKTKDE-P-N-GL--------SPNDLVAALSEVNVDFILLAGY 168 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~~-~-~-~~--------~d~~l~~~L~~~~~DliV~agy 168 (294)
+.++|++.|+|++.....+.. + . .. ..+...+.++ +.|++++.|.
T Consensus 31 l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~--~aDlvl~iG~ 86 (137)
T PF00205_consen 31 LRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALE--QADLVLAIGT 86 (137)
T ss_dssp HHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHH--HSSEEEEESS
T ss_pred HHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhc--CCCEEEEECC
Confidence 568999999999876543211 0 0 01 1355566664 6899999994
No 195
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=27.38 E-value=84 Score=25.48 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=23.6
Q ss_pred eeEEEEEeCCchHHH--HHHHHHHcCCCCceEEEEecCC
Q 022631 81 KNLAVFVSGGGSNFR--SIHAACLAGSVYGDVVVLVTNK 117 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~--~ll~~~~~~~~~~eI~~Vvt~~ 117 (294)
|||.|.++|+...++ .++..+.+. ..+|.+|+|..
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~--g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA--GWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT--TSEEEEEESHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC--CCEEEEEECCc
Confidence 689999999887766 445555443 46888888854
No 196
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=27.25 E-value=3.7e+02 Score=27.28 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=43.4
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCc--------cHHHHHhCCCCE-EEcCCCCCCCCCCChh
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCG--------GAEYARDNSIPV-ILFPKTKDEPNGLSPN 149 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~--------~~~~A~~~gIP~-~~~~~~~~~~~~~~d~ 149 (294)
..||++++ |.....-.+...+.+ +-.+++.+.|...+.. ..+.+.+.|.+. +.++.. +..
T Consensus 313 ~GKrvai~--Gdp~~~i~LarfL~e--lGmevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~~~~vive~~-------D~~ 381 (457)
T CHL00073 313 RGKSVFFM--GDNLLEISLARFLIR--CGMIVYEIGIPYMDKRYQAAELALLEDTCRKMNVPMPRIVEKP-------DNY 381 (457)
T ss_pred CCCEEEEE--CCCcHHHHHHHHHHH--CCCEEEEEEeCCCChhhhHHHHHHHHHHhhhcCCCCcEEEeCC-------CHH
Confidence 36787733 433334444444433 4567888877643322 223444566542 323321 346
Q ss_pred HHHHHHHhcCCcEEEEe
Q 022631 150 DLVAALSEVNVDFILLA 166 (294)
Q Consensus 150 ~l~~~L~~~~~DliV~a 166 (294)
++.+.+++.+|||+|.-
T Consensus 382 el~~~i~~~~pDLlIgG 398 (457)
T CHL00073 382 NQIQRIRELQPDLAITG 398 (457)
T ss_pred HHHHHHhhCCCCEEEcc
Confidence 77888899999999854
No 197
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=27.19 E-value=3.2e+02 Score=25.97 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHcCCCCceEEEEecC-CCCCcc----HHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEE
Q 022631 91 GSNFRSIHAACLAGSVYGDVVVLVTN-KPDCGG----AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILL 165 (294)
Q Consensus 91 gs~l~~ll~~~~~~~~~~eI~~Vvt~-~~~~~~----~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~ 165 (294)
++.+..|..+...|+ +++| +|+. +|...+ .....+.|||+..+. |..+...++..++|.+++
T Consensus 137 ~tv~~~l~~A~~~g~-~~~V--~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~----------Dsa~~~~m~~~~vd~Vlv 203 (303)
T TIGR00524 137 GTALGVIRSAWEDGK-RIRV--IACETRPRNQGSRLTAWELMQDGIDVTLIT----------DSMAAYFMQKGEIDAVIV 203 (303)
T ss_pred chHHHHHHHHHHcCC-ceEE--EECCCCCccchHHHHHHHHHHCCCCEEEEC----------hhHHHHHccccCCCEEEE
Confidence 455565555555543 3444 3442 443322 344556899998875 345556666668999886
Q ss_pred ec
Q 022631 166 AG 167 (294)
Q Consensus 166 ag 167 (294)
-.
T Consensus 204 GA 205 (303)
T TIGR00524 204 GA 205 (303)
T ss_pred cc
Confidence 43
No 198
>PRK05802 hypothetical protein; Provisional
Probab=27.17 E-value=2.3e+02 Score=26.95 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=46.7
Q ss_pred eeEEEEEeCCc-hHHHHHHHHHHcCCCCceEEEEecCCCCC--ccHHHHHhCC--CCEEE-cCCCCCCCCCCChhHHHHH
Q 022631 81 KNLAVFVSGGG-SNFRSIHAACLAGSVYGDVVVLVTNKPDC--GGAEYARDNS--IPVIL-FPKTKDEPNGLSPNDLVAA 154 (294)
Q Consensus 81 ~rIaVl~SG~g-s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~--~~~~~A~~~g--IP~~~-~~~~~~~~~~~~d~~l~~~ 154 (294)
.++.+++.|.| +.+..++..+.+.. .+|.+++..+... ...+..++.+ +++.. +++..... .....+.+.
T Consensus 173 ~~~llIaGGiGIaPl~~l~~~l~~~~--~~v~li~g~r~~~~~~~~~el~~~~~~~~~~~~~ddG~~~~--~~~g~v~~~ 248 (320)
T PRK05802 173 GKSLVIARGIGQAPGVPVIKKLYSNG--NKIIVIIDKGPFKNNFIKEYLELYNIEIIELNLLDDGELSE--EGKDILKEI 248 (320)
T ss_pred CeEEEEEeEEeHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHHHHHHHhhCceEEEEecccCCCCc--cccchHHHH
Confidence 46777776655 55777777765443 3677777766432 2233334444 33332 23211110 011234456
Q ss_pred HHhcCCcEEEEecccccc
Q 022631 155 LSEVNVDFILLAGYLKLI 172 (294)
Q Consensus 155 L~~~~~DliV~agy~~il 172 (294)
+++.+.|++++.|=..++
T Consensus 249 l~~~~~~~vy~CGP~~M~ 266 (320)
T PRK05802 249 IKKEDINLIHCGGSDILH 266 (320)
T ss_pred hcCCCCCEEEEECCHHHH
Confidence 666678999998854433
No 199
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.13 E-value=5.4e+02 Score=25.28 Aligned_cols=85 Identities=18% Similarity=0.091 Sum_probs=47.3
Q ss_pred CCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccH----HHHHhCCCCEEEcCCCCCCCCCCChhHHHH
Q 022631 78 IKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGA----EYARDNSIPVILFPKTKDEPNGLSPNDLVA 153 (294)
Q Consensus 78 ~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~----~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~ 153 (294)
...+|++|. |.+...-.+...+.+ .-.+++.|++........ ...+..+++...+.. .+..++.+
T Consensus 297 l~gk~v~i~--~~~~~~~~l~~~L~e--~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------~d~~el~~ 365 (428)
T cd01965 297 LGGKRVAIA--GDPDLLLGLSRFLLE--MGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFV-------GDLWDLES 365 (428)
T ss_pred hcCCEEEEE--cChHHHHHHHHHHHH--cCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEEC-------CCHHHHHH
Confidence 346788777 333433344444332 346788777754332211 112223444332221 12467888
Q ss_pred HHHhcCCcEEEEeccccccC
Q 022631 154 ALSEVNVDFILLAGYLKLIP 173 (294)
Q Consensus 154 ~L~~~~~DliV~agy~~ilp 173 (294)
.+++.+||+++.-++.+-+-
T Consensus 366 ~i~~~~pdliig~~~~~~~a 385 (428)
T cd01965 366 LAKEEPVDLLIGNSHGRYLA 385 (428)
T ss_pred HhhccCCCEEEECchhHHHH
Confidence 89999999999887765443
No 200
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.11 E-value=2.4e+02 Score=21.95 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=14.3
Q ss_pred cHHHHHhCCCCEEEcCCCCC
Q 022631 122 GAEYARDNSIPVILFPKTKD 141 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~ 141 (294)
+.+.+.+.|+|+..++...|
T Consensus 67 i~~~~~~~~ipv~~I~~~~Y 86 (95)
T TIGR00853 67 LKKETDKKGIPVEVINGAQY 86 (95)
T ss_pred HHHHhhhcCCCEEEeChhhc
Confidence 45677888899888875443
No 201
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=27.00 E-value=2e+02 Score=21.27 Aligned_cols=16 Identities=50% Similarity=1.007 Sum_probs=13.4
Q ss_pred cHHHHHhCCCCEEEcC
Q 022631 122 GAEYARDNSIPVILFP 137 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~ 137 (294)
..++|++.|+++..++
T Consensus 49 A~~wA~~~gv~~~~~~ 64 (71)
T PF10686_consen 49 AARWARERGVPVIRFP 64 (71)
T ss_pred HHHHHHHCCCeeEEeC
Confidence 4589999999998775
No 202
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=26.90 E-value=2.4e+02 Score=29.68 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=45.6
Q ss_pred ceeEEEEEeCCc----hH-HHHHHHHHHcCCCCceEEEEecCCCC-----------CccHHHHHhCCCCEEEcCCCCCCC
Q 022631 80 KKNLAVFVSGGG----SN-FRSIHAACLAGSVYGDVVVLVTNKPD-----------CGGAEYARDNSIPVILFPKTKDEP 143 (294)
Q Consensus 80 ~~rIaVl~SG~g----s~-l~~ll~~~~~~~~~~eI~~Vvt~~~~-----------~~~~~~A~~~gIP~~~~~~~~~~~ 143 (294)
.+||+|+.||+. .| ...+++.........+|.++.--... ..+..+...-|..++-..+.+..
T Consensus 79 ~~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~- 157 (610)
T PLN03028 79 AVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIR- 157 (610)
T ss_pred ccEEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcC-
Confidence 589999999954 22 34444444332222455554321110 11334555545544332222211
Q ss_pred CCCChhHHHHHHHhcCCcEEEEec
Q 022631 144 NGLSPNDLVAALSEVNVDFILLAG 167 (294)
Q Consensus 144 ~~~~d~~l~~~L~~~~~DliV~ag 167 (294)
....-+.+++.++++++|.+|+.|
T Consensus 158 ~~e~~~~i~e~l~~l~Id~LvvIG 181 (610)
T PLN03028 158 TTEQVNAALAACEALKLDGLVIIG 181 (610)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC
Confidence 111235678899999999988877
No 203
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.89 E-value=2.5e+02 Score=25.26 Aligned_cols=82 Identities=20% Similarity=0.183 Sum_probs=50.6
Q ss_pred EEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEE
Q 022631 85 VFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFIL 164 (294)
Q Consensus 85 Vl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV 164 (294)
++..|+=.+.+..-.+...| -..+||..-+..+.++|+++|||++--- .+..++.+.+ +.++|++-
T Consensus 69 ~vGaGTV~~~~~~~~a~~aG-----A~FivsP~~~~~v~~~~~~~~i~~iPG~--------~T~~E~~~A~-~~Gad~vk 134 (213)
T PRK06552 69 LIGAGTVLDAVTARLAILAG-----AQFIVSPSFNRETAKICNLYQIPYLPGC--------MTVTEIVTAL-EAGSEIVK 134 (213)
T ss_pred EEeeeeCCCHHHHHHHHHcC-----CCEEECCCCCHHHHHHHHHcCCCEECCc--------CCHHHHHHHH-HcCCCEEE
Confidence 34444445556666666555 2356666555668899999999987321 2356666665 68999988
Q ss_pred EeccccccChhHHhcCC
Q 022631 165 LAGYLKLIPMELIRAYP 181 (294)
Q Consensus 165 ~agy~~ilp~~~l~~~~ 181 (294)
+.-. ..+..+.++..+
T Consensus 135 lFPa-~~~G~~~ik~l~ 150 (213)
T PRK06552 135 LFPG-STLGPSFIKAIK 150 (213)
T ss_pred ECCc-ccCCHHHHHHHh
Confidence 7321 235566666554
No 204
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=26.68 E-value=1.3e+02 Score=24.48 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=22.5
Q ss_pred ccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEecc
Q 022631 121 GGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGY 168 (294)
Q Consensus 121 ~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy 168 (294)
.+.+..+++||+.-.. .++.+.+.. + .++|+||...-
T Consensus 49 ~a~~~l~~~Gid~s~h-----~s~~l~~~~----~--~~aDlIi~m~~ 85 (141)
T cd00115 49 RAIAVLAEHGIDISGH-----RARQLTEDD----F--DEFDLIITMDE 85 (141)
T ss_pred HHHHHHHHcCCCcccC-----eeeeCCHHH----H--HhCCEEEEECH
Confidence 3568888999996321 233343322 2 36899998764
No 205
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=26.59 E-value=4.7e+02 Score=24.65 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=38.7
Q ss_pred EEEeC-CchHHHHHHHHHHcCCCCceEEEEecCCCCCccH---HHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCC
Q 022631 85 VFVSG-GGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGA---EYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNV 160 (294)
Q Consensus 85 Vl~SG-~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~---~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~ 160 (294)
||.-+ +++.+..|..+...|+ +++|.+. -.+|...+. ....+.|||+..+.. ..+-..+++ +
T Consensus 113 ILTh~~S~tv~~~l~~A~~~gk-~~~V~v~-EsrP~~qG~~la~eL~~~GI~vtlI~D----------sa~~~~m~~--v 178 (275)
T PRK08335 113 IITHSFSSAVLEILKTAKRKGK-RFKVILT-ESAPDYEGLALANELEFLGIEFEVITD----------AQLGLFAKE--A 178 (275)
T ss_pred EEEECCcHHHHHHHHHHHHcCC-ceEEEEe-cCCCchhHHHHHHHHHHCCCCEEEEec----------cHHHHHHHh--C
Confidence 44444 4566666666655553 4454322 234443333 334457999988753 233334433 9
Q ss_pred cEEEEecccccc
Q 022631 161 DFILLAGYLKLI 172 (294)
Q Consensus 161 DliV~agy~~il 172 (294)
|.+|+ |--++.
T Consensus 179 d~Viv-GAD~I~ 189 (275)
T PRK08335 179 TLALV-GADNVT 189 (275)
T ss_pred CEEEE-CccEEe
Confidence 98885 333444
No 206
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=26.56 E-value=3.3e+02 Score=25.18 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=48.1
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhC-CCCEEEcCCCCCCCCCCChhHHHHHHHhcCC
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDN-SIPVILFPKTKDEPNGLSPNDLVAALSEVNV 160 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~-gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~ 160 (294)
||-|| |+.+--+.|.+.+... ..++.+.+.+.... +...+. +++++. +. ...+++.+.+++.++
T Consensus 2 ~ILvl--GGT~egr~la~~L~~~--g~~v~~s~~t~~~~---~~~~~~g~~~v~~-g~-------l~~~~l~~~l~~~~i 66 (256)
T TIGR00715 2 TVLLM--GGTVDSRAIAKGLIAQ--GIEILVTVTTSEGK---HLYPIHQALTVHT-GA-------LDPQELREFLKRHSI 66 (256)
T ss_pred eEEEE--echHHHHHHHHHHHhC--CCeEEEEEccCCcc---ccccccCCceEEE-CC-------CCHHHHHHHHHhcCC
Confidence 44444 4434466666665533 24566555543322 223334 466653 21 234567789999999
Q ss_pred cEEEEec--cccccChhHHhcC
Q 022631 161 DFILLAG--YLKLIPMELIRAY 180 (294)
Q Consensus 161 DliV~ag--y~~ilp~~~l~~~ 180 (294)
|++|=+. |-..++....+..
T Consensus 67 ~~VIDAtHPfA~~is~~a~~a~ 88 (256)
T TIGR00715 67 DILVDATHPFAAQITTNATAVC 88 (256)
T ss_pred CEEEEcCCHHHHHHHHHHHHHH
Confidence 9999876 4556666666543
No 207
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=26.44 E-value=3.3e+02 Score=27.38 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=33.4
Q ss_pred hhHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCC--C--CCCCC
Q 022631 148 PNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLL--P--AFGGK 198 (294)
Q Consensus 148 d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlL--P--~yRG~ 198 (294)
..++.+.+++.+||+++.-+..+.+-.+ ..-.++.+|..-+ | .|+|.
T Consensus 393 ~~el~~~i~~~~pDl~ig~~~~~~~a~k----~gIP~~~~~~~~~~~~~~Gy~G~ 443 (466)
T TIGR01282 393 HYEFEEFVEKLKPDLVGSGIKEKYVFQK----MGVPFRQMHSWDYSGPYHGYDGF 443 (466)
T ss_pred HHHHHHHHHHhCCCEEEecCCccceeee----cCCCccccccccccCcchhHhHH
Confidence 4678888999999999988888766543 2334677766554 4 56664
No 208
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=26.28 E-value=2.4e+02 Score=27.49 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=39.0
Q ss_pred CchHHHHHHHHHHcCCCCceEEEEecC-CCCCcc----HHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEE
Q 022631 90 GGSNFRSIHAACLAGSVYGDVVVLVTN-KPDCGG----AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFIL 164 (294)
Q Consensus 90 ~gs~l~~ll~~~~~~~~~~eI~~Vvt~-~~~~~~----~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV 164 (294)
-||.+..|..+...|+ +++| +++. +|...+ .....+.|||+..+. |..+-..+...++|.++
T Consensus 164 ~gTal~~i~~A~~~gk-~~~V--~v~EsRP~~qG~~lta~eL~~~GI~vtlI~----------Dsa~~~~M~~~~vd~Vi 230 (344)
T PRK05720 164 YGTALAPIYAAKEKGI-DIHV--YADETRPRLQGARLTAWELYQAGIDVTVIT----------DNMAAHLMQTGKIDAVI 230 (344)
T ss_pred hhHHHHHHHHHHHcCC-ceEE--EEcCCCChhhhHHHHHHHHHHCCCCEEEEc----------ccHHHHHhcccCCCEEE
Confidence 3566666666655554 3343 4443 343322 234567899998875 23444555556899988
Q ss_pred Eecccccc
Q 022631 165 LAGYLKLI 172 (294)
Q Consensus 165 ~agy~~il 172 (294)
+. --++.
T Consensus 231 vG-Ad~I~ 237 (344)
T PRK05720 231 VG-ADRIA 237 (344)
T ss_pred Ec-ccEEe
Confidence 54 33444
No 209
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.03 E-value=4.1e+02 Score=23.30 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=75.5
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN 159 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~ 159 (294)
.++++|. |.|..-+.+...+... .++|+ +++.......+++...|...+ +. ++ +...+
T Consensus 28 gk~v~I~--G~G~vG~~~A~~L~~~--G~~Vv--v~D~~~~~~~~~~~~~g~~~v--~~----------~~----l~~~~ 85 (200)
T cd01075 28 GKTVAVQ--GLGKVGYKLAEHLLEE--GAKLI--VADINEEAVARAAELFGATVV--AP----------EE----IYSVD 85 (200)
T ss_pred CCEEEEE--CCCHHHHHHHHHHHHC--CCEEE--EEcCCHHHHHHHHHHcCCEEE--cc----------hh----hcccc
Confidence 4677777 4443333444443332 24554 455433233445555554332 11 12 22347
Q ss_pred CcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecC-CCCCCceEEEEE
Q 022631 160 VDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDE-HYDTGRILAQRV 238 (294)
Q Consensus 160 ~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~-~~D~G~II~Q~~ 238 (294)
+|+++.+.-..+|..+.++..+.++|-= .+--|-- .+-....+. .-| ++++.+ ..-+|-++.--
T Consensus 86 ~Dv~vp~A~~~~I~~~~~~~l~~~~v~~-~AN~~~~-------~~~~~~~L~----~~G--i~~~Pd~~~NaGGv~~~~- 150 (200)
T cd01075 86 ADVFAPCALGGVINDDTIPQLKAKAIAG-AANNQLA-------DPRHGQMLH----ERG--ILYAPDYVVNAGGLINVA- 150 (200)
T ss_pred CCEEEecccccccCHHHHHHcCCCEEEE-CCcCccC-------CHhHHHHHH----HCC--CEEeCceeeeCcCceeeh-
Confidence 9999977778899999998877554321 1111111 011222222 123 344442 33356555522
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Q 022631 239 VPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERV 274 (294)
Q Consensus 239 ~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i 274 (294)
+....++ .++..+++... .+.+.++++.-.+..+
T Consensus 151 ~e~~~~~-~~~~~~~~~~~-~~~~~~v~~~a~~~~~ 184 (200)
T cd01075 151 DELYGGN-EARVLAKVEAI-YDTLLEIFAQAKQDGI 184 (200)
T ss_pred hHHhCCc-HHHHHHHHHHH-HHHHHHHHHHHHHhCc
Confidence 2222222 44566666655 6666666665544333
No 210
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=26.02 E-value=1.6e+02 Score=23.82 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=31.8
Q ss_pred hHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCC
Q 022631 149 NDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHY 228 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~ 228 (294)
.++++.++..++|.+|+...-++-.. . ..+..+.+-....|+.+|.+++++
T Consensus 55 ~~ll~~~~~g~~~~ivv~~~~Rl~R~-~----------------------------~~~~~~~~~l~~~gi~l~~~~~~~ 105 (148)
T smart00857 55 QRLLADLRAGDIDVLVVYKLDRLGRS-L----------------------------RDLLALLELLEKKGVRLVSVTEGI 105 (148)
T ss_pred HHHHHHHHcCCCCEEEEeccchhhCc-H----------------------------HHHHHHHHHHHHCCCEEEECcCCC
Confidence 46677777778889988776554321 1 112223333455789999998765
No 211
>PLN02384 ribose-5-phosphate isomerase
Probab=26.01 E-value=1.6e+02 Score=27.78 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=30.0
Q ss_pred EEEeCCchHHHHHHHHH----HcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCC
Q 022631 85 VFVSGGGSNFRSIHAAC----LAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPK 138 (294)
Q Consensus 85 Vl~SG~gs~l~~ll~~~----~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~ 138 (294)
|+.-|+||...-+++.+ +.+.+ .+|.+|-|.. .-...|+++|||+..++.
T Consensus 52 vVGLGTGSTv~~~I~~La~r~~~~~l-~~I~~VpTS~---~T~~~a~~~GIpl~~l~~ 105 (264)
T PLN02384 52 VLGLGTGSTAKHAVDRIGELLRQGKL-KNIIGIPTSK---KTHEQAVSLGIPLSDLDS 105 (264)
T ss_pred EEEecchHHHHHHHHHHHHhhhhccc-cceEEEcCcH---HHHHHHHHcCCcEecccc
Confidence 35567787765555443 22221 1377775543 235789999999877653
No 212
>PRK14072 6-phosphofructokinase; Provisional
Probab=25.97 E-value=3.2e+02 Score=27.23 Aligned_cols=20 Identities=10% Similarity=0.389 Sum_probs=16.6
Q ss_pred hhHHHHHHHhcCCcEEEEec
Q 022631 148 PNDLVAALSEVNVDFILLAG 167 (294)
Q Consensus 148 d~~l~~~L~~~~~DliV~ag 167 (294)
-+.+++.|+++++|.+|+.|
T Consensus 92 ~~~~~~~l~~~~Id~LivIG 111 (416)
T PRK14072 92 YERLLEVFKAHDIGYFFYNG 111 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEC
Confidence 36778899999999888776
No 213
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.79 E-value=4.4e+02 Score=23.98 Aligned_cols=81 Identities=14% Similarity=0.010 Sum_probs=46.0
Q ss_pred EEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEE
Q 022631 86 FVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILL 165 (294)
Q Consensus 86 l~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~ 165 (294)
+..|+=.+.+..-.++..| --.+||..-+..+.++|+++|||++-- ..+..|+...+ +.+.|++=+
T Consensus 73 vGaGTVl~~e~a~~a~~aG-----A~FiVsP~~~~~v~~~~~~~~i~~iPG--------~~TpsEi~~A~-~~Ga~~vKl 138 (222)
T PRK07114 73 LGVGSIVDAATAALYIQLG-----ANFIVTPLFNPDIAKVCNRRKVPYSPG--------CGSLSEIGYAE-ELGCEIVKL 138 (222)
T ss_pred EeeEeCcCHHHHHHHHHcC-----CCEEECCCCCHHHHHHHHHcCCCEeCC--------CCCHHHHHHHH-HCCCCEEEE
Confidence 4333334445555555554 234666555556788899999987631 12345666665 567777655
Q ss_pred eccccccChhHHhcCC
Q 022631 166 AGYLKLIPMELIRAYP 181 (294)
Q Consensus 166 agy~~ilp~~~l~~~~ 181 (294)
.== ..+....++..+
T Consensus 139 FPA-~~~G~~~ikal~ 153 (222)
T PRK07114 139 FPG-SVYGPGFVKAIK 153 (222)
T ss_pred Ccc-cccCHHHHHHHh
Confidence 322 245566666554
No 214
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=25.70 E-value=2e+02 Score=23.97 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=37.7
Q ss_pred eeEEEEEeCCchH----HHHHHHHHHcCCCCceEEEEe---cCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHH
Q 022631 81 KNLAVFVSGGGSN----FRSIHAACLAGSVYGDVVVLV---TNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVA 153 (294)
Q Consensus 81 ~rIaVl~SG~gs~----l~~ll~~~~~~~~~~eI~~Vv---t~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~ 153 (294)
+||.+++.|+ +| .++++..... .....-.++. .++.+....+.++++||++-.. .++.+.++.
T Consensus 3 ~~ILfVC~gN-~cRSpmAEa~~~~~~~-~~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid~~~h-----~s~~lt~~~--- 72 (144)
T PRK11391 3 NSILVVCTGN-ICRSPIGERLLRKRLP-GVKVKSAGVHGLVKHPADATAADVAANHGVSLEGH-----AGRKLTAEM--- 72 (144)
T ss_pred CeEEEEcCCc-HhHHHHHHHHHHHhcC-CeEEEcccccCCCCCCCCHHHHHHHHHcCCCcCCC-----ccCcCCHHH---
Confidence 5777776663 33 3344443222 1221222222 1233344678899999986321 223333332
Q ss_pred HHHhcCCcEEEEecc
Q 022631 154 ALSEVNVDFILLAGY 168 (294)
Q Consensus 154 ~L~~~~~DliV~agy 168 (294)
++ .+|+||.+.-
T Consensus 73 -~~--~~DlIl~M~~ 84 (144)
T PRK11391 73 -AR--NYDLILAMES 84 (144)
T ss_pred -Hh--hCCEEEECCH
Confidence 22 7899998753
No 215
>PRK04457 spermidine synthase; Provisional
Probab=25.65 E-value=5.3e+02 Score=23.67 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=77.0
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhC-CCCEEEcCCCCCCCCCCChhHHHHHHHh-
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDN-SIPVILFPKTKDEPNGLSPNDLVAALSE- 157 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~-gIP~~~~~~~~~~~~~~~d~~l~~~L~~- 157 (294)
.++|.++..|+|+....+.... + ..+|.+| .-+..+.+.|+++ +.+-. + .+. .+...+..+.++.
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~--p--~~~v~~V---Eidp~vi~~A~~~f~~~~~--~-~rv---~v~~~Da~~~l~~~ 133 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYL--P--DTRQTAV---EINPQVIAVARNHFELPEN--G-ERF---EVIEADGAEYIAVH 133 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhC--C--CCeEEEE---ECCHHHHHHHHHHcCCCCC--C-Cce---EEEECCHHHHHHhC
Confidence 5688888888777666555432 2 2345544 2233456677664 22100 0 000 0001122233333
Q ss_pred -cCCcEEEEeccccc------cChhHHhcC-----CCCE--EEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEE
Q 022631 158 -VNVDFILLAGYLKL------IPMELIRAY-----PRSI--VNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHF 223 (294)
Q Consensus 158 -~~~DliV~agy~~i------lp~~~l~~~-----~~g~--iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~ 223 (294)
..+|+|++-.|..- ...++++.. +.|+ +|+.... |.++ ... +++. ..++-.++.
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~-~~~~-------~~l-~~l~---~~F~~~~~~ 201 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD-KRYD-------RYL-ERLE---SSFEGRVLE 201 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc-hhHH-------HHH-HHHH---HhcCCcEEE
Confidence 36899998777432 224555532 4554 4544321 2121 111 2232 334333344
Q ss_pred ecCCCCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHhCC
Q 022631 224 VDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHR---LYVDVASALCEER 273 (294)
Q Consensus 224 v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~---ll~~~l~~l~~g~ 273 (294)
+... ..|.++.-..-.........+|.+|....+.+ -+...++.+..++
T Consensus 202 ~~~~-~~~N~v~~a~~~~~~~~~~~~l~~~a~~l~~~~~~~~~~~~~~~~~~~ 253 (262)
T PRK04457 202 LPAE-SHGNVAVFAFKSAPKELRWDKLRKRAKKLENEHGLDFHRFVAKLKASN 253 (262)
T ss_pred EecC-CCccEEEEEECCCCCCcCHHHHHHHHHHHHHHhCCCHHHHHHHHhhcc
Confidence 4322 44666554321122234567787776655433 2444555554444
No 216
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=25.46 E-value=2.4e+02 Score=21.26 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=39.2
Q ss_pred cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccChhHHh
Q 022631 122 GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIR 178 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~ 178 (294)
+..+|...+.|++.++ .. .++++.+.|+..++.=+++.|-...|++++.+
T Consensus 42 a~~~a~~~~~PIll~~-~~------l~~~~~~~l~~~~~~~v~iiGg~~~is~~v~~ 91 (92)
T PF04122_consen 42 ASPLAAKNNAPILLVN-NS------LPSSVKAFLKSLNIKKVYIIGGEGAISDSVEN 91 (92)
T ss_pred hHHHHHhcCCeEEEEC-CC------CCHHHHHHHHHcCCCEEEEECCCCccCHHHhc
Confidence 3468888999999887 22 23678888998888888888888888887754
No 217
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=25.27 E-value=3e+02 Score=27.95 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=12.1
Q ss_pred hhHHHHHHHhcCCcEEEE
Q 022631 148 PNDLVAALSEVNVDFILL 165 (294)
Q Consensus 148 d~~l~~~L~~~~~DliV~ 165 (294)
.+++++.+++.++|++|.
T Consensus 58 ~~~l~~~a~~~~id~Vi~ 75 (486)
T PRK05784 58 PEEVKKVAKEVNPDLVVI 75 (486)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 356667777777777764
No 218
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=25.13 E-value=42 Score=31.23 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=38.5
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCC---ccHHHHHhCCCCEE
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDC---GGAEYARDNSIPVI 134 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~---~~~~~A~~~gIP~~ 134 (294)
.-+|=|++|||..+++.+.++...+...+-..+-|.+.... .++++..++|||+.
T Consensus 197 ~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~yL~~~gi~VR 254 (256)
T COG0107 197 AVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEYLAEQGIEVR 254 (256)
T ss_pred hCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHHHHHcCCCcc
Confidence 57888999999999999999987775444344433333332 35677788888763
No 219
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.11 E-value=1.4e+02 Score=26.12 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=41.7
Q ss_pred HHHhCC-CCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccChhHHhcCCC
Q 022631 125 YARDNS-IPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPR 182 (294)
Q Consensus 125 ~A~~~g-IP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~ 182 (294)
.-+..| =|+++...++..+..+.-+.+...+.+-+-++.++.|.++=||+++++.+.+
T Consensus 98 IEk~eG~rPLi~~TsAr~~~N~isy~~lr~~I~e~dkp~LilfGTGwGlpde~m~~sDY 156 (190)
T COG4752 98 IEKEEGRRPLIVGTSARTYPNTISYSWLRNEIQERDKPWLILFGTGWGLPDELMNTSDY 156 (190)
T ss_pred HHhhcCCCceEEeccccccCCcccHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHhhH
Confidence 333444 5666655544344455566777788888889999999999999999987754
No 220
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=25.08 E-value=3.6e+02 Score=25.87 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCCCceEEEEecCCC--CCc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEe
Q 022631 93 NFRSIHAACLAGSVYGDVVVLVTNKP--DCG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLA 166 (294)
Q Consensus 93 ~l~~ll~~~~~~~~~~eI~~Vvt~~~--~~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~a 166 (294)
.+..+-+.+..- ..+-++|||++. +.+ +.+..++.|+.+..++.....+....-++..+..++.++|+||..
T Consensus 11 ~~~~l~~~l~~~--g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIai 88 (370)
T cd08192 11 AIKELPAECAEL--GIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAF 88 (370)
T ss_pred HHHHHHHHHHHc--CCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 345554444321 123456777643 222 345556778988776543222322222455666778899999988
Q ss_pred cccccc
Q 022631 167 GYLKLI 172 (294)
Q Consensus 167 gy~~il 172 (294)
|=|..+
T Consensus 89 GGGSvi 94 (370)
T cd08192 89 GGGSAL 94 (370)
T ss_pred CCchHH
Confidence 876655
No 221
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.08 E-value=1.8e+02 Score=25.44 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=24.9
Q ss_pred CceEEEEecCCCCC----ccHHHHHhCCCCEEEcCC
Q 022631 107 YGDVVVLVTNKPDC----GGAEYARDNSIPVILFPK 138 (294)
Q Consensus 107 ~~eI~~Vvt~~~~~----~~~~~A~~~gIP~~~~~~ 138 (294)
+.+++.+|+..... ...+.|++.|+|++.+..
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~ 146 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTG 146 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence 46889999977553 256899999999988764
No 222
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=24.98 E-value=3.3e+02 Score=26.75 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=41.3
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCC-CCccHHHHHhCCCCEEEc-CCCCCCCCC-CChhHHHHHHH
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKP-DCGGAEYARDNSIPVILF-PKTKDEPNG-LSPNDLVAALS 156 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~-~~~~~~~A~~~gIP~~~~-~~~~~~~~~-~~d~~l~~~L~ 156 (294)
++||.|+ |+|..-..++.+.+.- ..+++++.+++. .+...++|.+. +.+ +... ... .+.+.+++..+
T Consensus 2 ~k~iLi~--g~g~~a~~i~~aa~~~--G~~vv~~~~~~d~~a~~~~~ad~~----~~~~~~~~--~~~y~d~~~l~~~a~ 71 (451)
T PRK08591 2 FDKILIA--NRGEIALRIIRACKEL--GIKTVAVHSTADRDALHVQLADEA----VCIGPAPS--KKSYLNIPAIISAAE 71 (451)
T ss_pred cceEEEE--CCCHHHHHHHHHHHHc--CCeEEEEcChhhccCCCHhHCCEE----EEeCCCCc--ccccCCHHHHHHHHH
Confidence 5777777 7777767777766543 456666555432 22334455432 111 1110 011 12357777788
Q ss_pred hcCCcEEEE
Q 022631 157 EVNVDFILL 165 (294)
Q Consensus 157 ~~~~DliV~ 165 (294)
+.++|.++.
T Consensus 72 ~~~id~I~p 80 (451)
T PRK08591 72 ITGADAIHP 80 (451)
T ss_pred HhCCCEEEE
Confidence 888998764
No 223
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=24.95 E-value=6e+02 Score=24.37 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=57.5
Q ss_pred eeEEEEEeCCc--hHHHHHHHHHHcCCCCceEEEEecCCC-C-Cc--cHHHHHhCCCCE---EEcCCCCCCCCCC-----
Q 022631 81 KNLAVFVSGGG--SNFRSIHAACLAGSVYGDVVVLVTNKP-D-CG--GAEYARDNSIPV---ILFPKTKDEPNGL----- 146 (294)
Q Consensus 81 ~rIaVl~SG~g--s~l~~ll~~~~~~~~~~eI~~Vvt~~~-~-~~--~~~~A~~~gIP~---~~~~~~~~~~~~~----- 146 (294)
+||.+++..+. .-+..++.+++.. ...++..|+|..- + .. ......+.|+++ +.+.-........
T Consensus 1 ~ki~~v~GtRpe~iklapv~~~l~~~-~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (365)
T TIGR03568 1 KKICVVTGTRADYGLLRPLLKALQDD-PDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMG 79 (365)
T ss_pred CeEEEEEecChhHHHHHHHHHHHhcC-CCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHHH
Confidence 46776654433 2355666676542 2467888888543 1 11 234455555543 1111000000000
Q ss_pred -ChhHHHHHHHhcCCcEEEEeccc-cccChhHHhcC-CCCEEEEcCCCCC
Q 022631 147 -SPNDLVAALSEVNVDFILLAGYL-KLIPMELIRAY-PRSIVNIHPSLLP 193 (294)
Q Consensus 147 -~d~~l~~~L~~~~~DliV~agy~-~ilp~~~l~~~-~~g~iNiHPSlLP 193 (294)
--..+.+.+++.+||++++.|=. --+...+.... .-.++.+|.++..
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs 129 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVT 129 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccC
Confidence 01356677889999999998822 22232232222 2358889999863
No 224
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=24.83 E-value=2.4e+02 Score=25.71 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=30.5
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCC------ccHHHHHhCCCC-EEEcCC
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDC------GGAEYARDNSIP-VILFPK 138 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~------~~~~~A~~~gIP-~~~~~~ 138 (294)
.|++|++|||--.--.+..+...+ .++.+|..+-... ...+.|++.||+ +.+++-
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~~---~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~ 63 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQY---DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDV 63 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhcC---CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 479999999542221122222222 2566655543221 245789999997 766653
No 225
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=24.75 E-value=3.5e+02 Score=22.73 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=38.2
Q ss_pred ceEEEEecCCCCCccHHHHHhCCCCE-EEcCCCCCCC--CCCChhHHHHHHHhcCCcEEEEec--cccccChhHHhcC
Q 022631 108 GDVVVLVTNKPDCGGAEYARDNSIPV-ILFPKTKDEP--NGLSPNDLVAALSEVNVDFILLAG--YLKLIPMELIRAY 180 (294)
Q Consensus 108 ~eI~~Vvt~~~~~~~~~~A~~~gIP~-~~~~~~~~~~--~~~~d~~l~~~L~~~~~DliV~ag--y~~ilp~~~l~~~ 180 (294)
.++.+|+.........+.+..+|..- +.++...+.. .+..-+.+.+.+++.++|++++.+ +++-+.+.+-.+.
T Consensus 29 ~~v~~v~~G~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L 106 (168)
T cd01715 29 GEVTALVIGSGAEAVAAALKAYGADKVLVAEDPALAHYLAEPYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKL 106 (168)
T ss_pred CCEEEEEECCChHHHHHHHHhcCCCEEEEecChhhcccChHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHh
Confidence 45666666543322344455678863 4444322110 112234566677888999999776 3444444444443
No 226
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=24.69 E-value=3.5e+02 Score=23.53 Aligned_cols=70 Identities=29% Similarity=0.271 Sum_probs=40.4
Q ss_pred EeC-CchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEE
Q 022631 87 VSG-GGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILL 165 (294)
Q Consensus 87 ~SG-~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~ 165 (294)
+.| +|..-+.++.++... .++|.+++-+. +....+..++.|+-++..+-. +.+.+.+.|+ ++|.+++
T Consensus 3 V~GatG~~G~~v~~~L~~~--~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~~-------~~~~l~~al~--g~d~v~~ 70 (233)
T PF05368_consen 3 VTGATGNQGRSVVRALLSA--GFSVRALVRDP-SSDRAQQLQALGAEVVEADYD-------DPESLVAALK--GVDAVFS 70 (233)
T ss_dssp EETTTSHHHHHHHHHHHHT--TGCEEEEESSS-HHHHHHHHHHTTTEEEES-TT--------HHHHHHHHT--TCSEEEE
T ss_pred EECCccHHHHHHHHHHHhC--CCCcEEEEecc-chhhhhhhhcccceEeecccC-------CHHHHHHHHc--CCceEEe
Confidence 335 465566677776664 46776665443 222334456678877765421 2466777776 6777776
Q ss_pred ecc
Q 022631 166 AGY 168 (294)
Q Consensus 166 agy 168 (294)
+.-
T Consensus 71 ~~~ 73 (233)
T PF05368_consen 71 VTP 73 (233)
T ss_dssp ESS
T ss_pred ecC
Confidence 544
No 227
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=24.47 E-value=2.9e+02 Score=26.64 Aligned_cols=80 Identities=21% Similarity=0.173 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHcCCCCceEEEEecCCC--CCc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEE
Q 022631 92 SNFRSIHAACLAGSVYGDVVVLVTNKP--DCG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILL 165 (294)
Q Consensus 92 s~l~~ll~~~~~~~~~~eI~~Vvt~~~--~~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~ 165 (294)
..++.+-+.+... ..+=++|||++. +.+ +.+..++.|+.+..++...-++....-++..+.+++.++|.||.
T Consensus 9 g~~~~l~~~~~~~--~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 86 (375)
T cd08194 9 GAVDETGAVLADL--GGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIA 86 (375)
T ss_pred CHHHHHHHHHHHc--CCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 3444454444421 112356777643 122 34566678998877764333332222345667788899999999
Q ss_pred eccccccC
Q 022631 166 AGYLKLIP 173 (294)
Q Consensus 166 agy~~ilp 173 (294)
.|=|..+.
T Consensus 87 iGGGS~~D 94 (375)
T cd08194 87 LGGGSPID 94 (375)
T ss_pred eCCchHHH
Confidence 98776653
No 228
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=24.39 E-value=1.8e+02 Score=26.32 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=38.2
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFP 137 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~ 137 (294)
.-|+++|+--.-..=..++.....+.-..+|..|=+.-++..+.++|..++||...+.
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~ 166 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVR 166 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHHHHHcCCCHHHee
Confidence 5689999863211122233334445556788888776667778899999999976654
No 229
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=24.38 E-value=5.2e+02 Score=24.93 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=44.6
Q ss_pred EEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEE
Q 022631 84 AVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFI 163 (294)
Q Consensus 84 aVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dli 163 (294)
.++.+|+...+..++..... .++-+ ++.++.-......++..|+.+..++-........+.+++.+.+.+ +++++
T Consensus 107 i~it~G~~~al~~~~~~~~~---~gd~v-lv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~i 181 (412)
T PTZ00433 107 VVLCSGVSHAILMALTALCD---EGDNI-LVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD-RTKAL 181 (412)
T ss_pred EEEeCChHHHHHHHHHHhcC---CCCEE-EEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc-CceEE
Confidence 34556666666666665432 22332 333333334567788899988777532111112333455444433 67777
Q ss_pred EEecc----ccccCh
Q 022631 164 LLAGY----LKLIPM 174 (294)
Q Consensus 164 V~agy----~~ilp~ 174 (294)
++... +..++.
T Consensus 182 ~~~~p~NPtG~~~s~ 196 (412)
T PTZ00433 182 IMTNPSNPCGSNFSR 196 (412)
T ss_pred EEeCCCCCCCcccCH
Confidence 76542 455553
No 230
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=24.38 E-value=4e+02 Score=22.99 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=33.4
Q ss_pred ceeEEEEEeCCc-hHHHHHHHHHHcCCCCceEEEEecCCCCC------ccHHHHHhCCCCEEEcC
Q 022631 80 KKNLAVFVSGGG-SNFRSIHAACLAGSVYGDVVVLVTNKPDC------GGAEYARDNSIPVILFP 137 (294)
Q Consensus 80 ~~rIaVl~SG~g-s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~------~~~~~A~~~gIP~~~~~ 137 (294)
..++.+++.|.| +.+..++..........++.++...+... .+.++++++++.++.+.
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~ 159 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAAGVVLHVID 159 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHhcCeEEEEEe
Confidence 357777777766 45666776655443235677777765432 13355666555555443
No 231
>PRK04527 argininosuccinate synthase; Provisional
Probab=24.31 E-value=2.2e+02 Score=28.41 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=33.1
Q ss_pred ceeEEEEEeCCc-hHH-HHHHHHHHcCCCCceEEEEecCCCCC------ccHHHHHhCCC-CEEEcCC
Q 022631 80 KKNLAVFVSGGG-SNF-RSIHAACLAGSVYGDVVVLVTNKPDC------GGAEYARDNSI-PVILFPK 138 (294)
Q Consensus 80 ~~rIaVl~SG~g-s~l-~~ll~~~~~~~~~~eI~~Vvt~~~~~------~~~~~A~~~gI-P~~~~~~ 138 (294)
+.|++|.+|||= |.+ ..++.. .| .++.+|..+-... .+.+.|++.|+ ++++++-
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e--~G---~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~ 64 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE--RG---YAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDG 64 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH--cC---CcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecC
Confidence 468999999954 332 222222 23 4677776654321 24688999998 5777653
No 232
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=24.30 E-value=32 Score=33.12 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceE
Q 022631 190 SLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRIL 234 (294)
Q Consensus 190 SlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II 234 (294)
+.+|+|||+. | .|.....|....|++.+.....+-.=.|+
T Consensus 70 a~IPDfRGp~--G---VWTL~~kG~~~~~~df~~ArPt~THmai~ 109 (353)
T KOG1905|consen 70 AGIPDFRGPQ--G---VWTLQQKGKDKFGVDFSEARPTVTHMAIV 109 (353)
T ss_pred cCCCCccCCC--c---eeehhhcCccccCCchhhcCCcchHHHHH
Confidence 6789999986 4 47777889889999988877666554444
No 233
>PLN00200 argininosuccinate synthase; Provisional
Probab=24.23 E-value=2.8e+02 Score=27.71 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=32.3
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCC-----ccHHHHHhCCCCE-EEcC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDC-----GGAEYARDNSIPV-ILFP 137 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~-----~~~~~A~~~gIP~-~~~~ 137 (294)
+.||+|.+|||--..-.+.. ++. ....+|.+|..+-... .+.+.|+++||+. ++++
T Consensus 5 ~~kVvva~SGGlDSsvla~~-L~e-~~G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~d 66 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKW-LRE-NYGCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKD 66 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHH-HHH-hhCCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEe
Confidence 56999999996422211111 111 1234677776654321 2468999999985 4444
No 234
>PRK06202 hypothetical protein; Provisional
Probab=24.18 E-value=4.7e+02 Score=23.03 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=46.6
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhC----CCCEEEcCCCCCCCCCCChhHHHHH
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDN----SIPVILFPKTKDEPNGLSPNDLVAA 154 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~----gIP~~~~~~~~~~~~~~~d~~l~~~ 154 (294)
+..+|.=+.+|+|.....|.+.......+.+|.+| +. .....+.|++. ++.+...+.. ++ ..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gv--D~-s~~~l~~a~~~~~~~~~~~~~~~~~----------~l-~~ 125 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAI--DP-DPRAVAFARANPRRPGVTFRQAVSD----------EL-VA 125 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEE--cC-CHHHHHHHHhccccCCCeEEEEecc----------cc-cc
Confidence 35688889999998777776654432223455555 22 22334455543 4555443211 01 01
Q ss_pred HHhcCCcEEEEeccccccChh
Q 022631 155 LSEVNVDFILLAGYLKLIPME 175 (294)
Q Consensus 155 L~~~~~DliV~agy~~ilp~~ 175 (294)
....+|+|++....+-++++
T Consensus 126 -~~~~fD~V~~~~~lhh~~d~ 145 (232)
T PRK06202 126 -EGERFDVVTSNHFLHHLDDA 145 (232)
T ss_pred -cCCCccEEEECCeeecCChH
Confidence 24579999998766767653
No 235
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=24.17 E-value=2.4e+02 Score=29.45 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=44.8
Q ss_pred CceeEEEEEeCCc----h-HHHHHHHHHHcCCCCceEEEEecCCCC-----------CccHHHHHhCCCCEEEcCCCCCC
Q 022631 79 KKKNLAVFVSGGG----S-NFRSIHAACLAGSVYGDVVVLVTNKPD-----------CGGAEYARDNSIPVILFPKTKDE 142 (294)
Q Consensus 79 ~~~rIaVl~SG~g----s-~l~~ll~~~~~~~~~~eI~~Vvt~~~~-----------~~~~~~A~~~gIP~~~~~~~~~~ 142 (294)
.++||+|+.||+. . ....++++.+......+|.++.--... ..+..+-..-|....-..+.+..
T Consensus 95 ~~~~IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~ 174 (568)
T PLN02251 95 QKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIE 174 (568)
T ss_pred ccceEEEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcC
Confidence 3589999999954 1 234455554332113355554321110 01223334445444322222221
Q ss_pred CCCCChhHHHHHHHhcCCcEEEEec
Q 022631 143 PNGLSPNDLVAALSEVNVDFILLAG 167 (294)
Q Consensus 143 ~~~~~d~~l~~~L~~~~~DliV~ag 167 (294)
. ...-+.+++.++++++|.+|+.|
T Consensus 175 ~-~e~~~~~~~~l~~l~Id~LViIG 198 (568)
T PLN02251 175 T-PEQFKQAEETATKLDLDGLVVIG 198 (568)
T ss_pred C-HHHHHHHHHHHHHcCCCEEEEeC
Confidence 1 11125678889999999888776
No 236
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=24.08 E-value=5.4e+02 Score=23.82 Aligned_cols=74 Identities=24% Similarity=0.387 Sum_probs=39.3
Q ss_pred eeEEEEEeCCc----hHHHHHHHHHH-c-CCCCceEEEEecCCCCC-----ccHHHHHhCCCCEEEcCCCCCCCCCCChh
Q 022631 81 KNLAVFVSGGG----SNFRSIHAACL-A-GSVYGDVVVLVTNKPDC-----GGAEYARDNSIPVILFPKTKDEPNGLSPN 149 (294)
Q Consensus 81 ~rIaVl~SG~g----s~l~~ll~~~~-~-~~~~~eI~~Vvt~~~~~-----~~~~~A~~~gIP~~~~~~~~~~~~~~~d~ 149 (294)
.++..|+..+| |....|..... . |. ..| ++|+..+.. ....+++..|+|+.... ...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~--~~V-~li~~D~~r~~a~eql~~~~~~~~~p~~~~~---------~~~ 261 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGN--KKV-ALITTDTYRIGAVEQLKTYAKILGVPVKVAR---------DPK 261 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCC--CeE-EEEECCccchhHHHHHHHHHHHhCCceeccC---------CHH
Confidence 44555554444 34455544433 2 21 234 455543321 23467888999987542 134
Q ss_pred HHHHHHHhc-CCcEEEEe
Q 022631 150 DLVAALSEV-NVDFILLA 166 (294)
Q Consensus 150 ~l~~~L~~~-~~DliV~a 166 (294)
++.+.++.+ +.|+|++-
T Consensus 262 ~l~~~l~~~~~~d~vliD 279 (282)
T TIGR03499 262 ELRKALDRLRDKDLILID 279 (282)
T ss_pred HHHHHHHHccCCCEEEEe
Confidence 556666654 47888763
No 237
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=23.93 E-value=3e+02 Score=25.53 Aligned_cols=81 Identities=19% Similarity=0.164 Sum_probs=49.4
Q ss_pred eEEEEEeCCchHHH---------HHHHHHHcCCCCceEEEEecCCCCCc--c--HHHHHhCC--CCEEEcCCCCCCCCCC
Q 022631 82 NLAVFVSGGGSNFR---------SIHAACLAGSVYGDVVVLVTNKPDCG--G--AEYARDNS--IPVILFPKTKDEPNGL 146 (294)
Q Consensus 82 rIaVl~SG~gs~l~---------~ll~~~~~~~~~~eI~~Vvt~~~~~~--~--~~~A~~~g--IP~~~~~~~~~~~~~~ 146 (294)
+|.|++--..++.- .|..++.... -.+|..+|.|..+.. . .++.++.. ||++.-+ .
T Consensus 27 ~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g-~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~--------~ 97 (238)
T PF04592_consen 27 HVTVVALLQASCYFCLLQASRLEDLREKLENEG-LSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQD--------E 97 (238)
T ss_pred cEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCC-CCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCC--------c
Confidence 55666555555533 3333333222 247888888876532 2 24444544 8887532 2
Q ss_pred ChhHHHHHHHhcCCcEEEEeccccc
Q 022631 147 SPNDLVAALSEVNVDFILLAGYLKL 171 (294)
Q Consensus 147 ~d~~l~~~L~~~~~DliV~agy~~i 171 (294)
...++.+.|...+-|++|--.+|++
T Consensus 98 ~q~dvW~~L~G~kdD~~iyDRCGrL 122 (238)
T PF04592_consen 98 NQPDVWELLNGSKDDFLIYDRCGRL 122 (238)
T ss_pred cccCHHHHhCCCcCcEEEEeccCcE
Confidence 3467889999999999998888775
No 238
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=23.82 E-value=1.3e+02 Score=28.22 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=25.4
Q ss_pred hHHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCC
Q 022631 149 NDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSL 191 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSl 191 (294)
+++-+.+++.+||++|+.+--+..- -+.+..+.-+|+..+++
T Consensus 38 ~~~~~~i~~~~PD~iVvi~~dH~~~-f~~d~~p~f~Ig~~~~~ 79 (277)
T cd07950 38 EPVKQWLAEQKPDVLFMVYNDHVTS-FFFDHYSAFALGVGDSY 79 (277)
T ss_pred HHHHHHHHHhCCCEEEEEcCcHHHH-hccccCCcEEEEecccc
Confidence 4667788999999999988322110 01232233366776666
No 239
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=23.73 E-value=4e+02 Score=26.64 Aligned_cols=79 Identities=19% Similarity=0.131 Sum_probs=44.0
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC-CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcC
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD-CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN 159 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~-~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~ 159 (294)
+||.|+ |+|-....++.++++- ..++++|-++... +...++|.+. +.++.... ..=.+.+.+++..++.+
T Consensus 3 ~kvLi~--~~geia~~ii~a~~~~--Gi~~v~v~~~~d~~a~~~~~aD~~----~~i~~~~~-~~y~d~~~i~~~a~~~~ 73 (472)
T PRK07178 3 KKILIA--NRGEIAVRIVRACAEM--GIRSVAIYSEADRHALHVKRADEA----YSIGADPL-AGYLNPRRLVNLAVETG 73 (472)
T ss_pred cEEEEE--CCcHHHHHHHHHHHHc--CCeEEEEeCCCccCCccHhhCCEE----EEcCCCch-hhhcCHHHHHHHHHHHC
Confidence 565555 7787777788887653 3567767665432 2333445432 22221100 00023457778888888
Q ss_pred CcEEEEeccc
Q 022631 160 VDFILLAGYL 169 (294)
Q Consensus 160 ~DliV~agy~ 169 (294)
+|.|+. ||+
T Consensus 74 ~D~I~p-g~g 82 (472)
T PRK07178 74 CDALHP-GYG 82 (472)
T ss_pred CCEEEe-CCC
Confidence 998774 454
No 240
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=23.50 E-value=2.9e+02 Score=25.95 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=31.0
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCC-CCceEEEEecCCCCCccHHHHHhCCCCE
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGS-VYGDVVVLVTNKPDCGGAEYARDNSIPV 133 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~-~~~eI~~Vvt~~~~~~~~~~A~~~gIP~ 133 (294)
.||+++ |.|.--++|+..+.... .+.+ -.+||++......+++.++|+..
T Consensus 2 ~~IgfI--G~G~Mg~Ai~~gl~~~g~~~~~-~I~v~~~~~e~~~~l~~~~g~~~ 52 (266)
T COG0345 2 MKIGFI--GAGNMGEAILSGLLKSGALPPE-EIIVTNRSEEKRAALAAEYGVVT 52 (266)
T ss_pred ceEEEE--ccCHHHHHHHHHHHhcCCCCcc-eEEEeCCCHHHHHHHHHHcCCcc
Confidence 578888 55666677777765443 3322 23566665444446888998884
No 241
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=23.45 E-value=2e+02 Score=25.64 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=28.6
Q ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCC------ccHHHHHhCCC-CEEEcC
Q 022631 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDC------GGAEYARDNSI-PVILFP 137 (294)
Q Consensus 82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~------~~~~~A~~~gI-P~~~~~ 137 (294)
|.+|++|||--..-.+..+...+ .+|.+|..+-... .++++|+..|+ +..+++
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~---~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~ 60 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEG---YEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVID 60 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH----SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE
T ss_pred CEEEEeCCCHHHHHHHHHHHHcC---CeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEee
Confidence 67899999653333333333343 3566665543211 24688999999 776665
No 242
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=23.41 E-value=2e+02 Score=26.31 Aligned_cols=54 Identities=31% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCC
Q 022631 78 IKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKT 139 (294)
Q Consensus 78 ~~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~ 139 (294)
...+||||+ +|+|+.+ +-++...| +-+.||-.-.--....|++.|+.++...+.
T Consensus 165 ~~i~rVAi~-~GsG~~~--~~~a~~~g-----aD~~ITGd~k~h~~~~A~~~gi~li~~gH~ 218 (249)
T TIGR00486 165 EYVKKVAVV-SGSGLSF--IMKALREG-----VDAYITGDLSHHTAHLARELGLNVIDAGHY 218 (249)
T ss_pred CceeEEEEE-cCchHHH--HHHHHHcC-----CCEEEecCCchHHHHHHHHCCCEEEEcCcH
Confidence 347788887 5555432 22333333 234566443323346789999999988874
No 243
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=23.26 E-value=4.3e+02 Score=25.84 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=38.2
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC-CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD-CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV 158 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~-~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~ 158 (294)
.+||.|+ |+|..-..++.+.++ +..+++++.++... +...++|.+. +.++.......-.+-+.+++..++.
T Consensus 2 ~~~ilil--g~g~~~~~~~~~a~~--lG~~~v~~~~~~~~~a~~~~~ad~~----~~~~~~~~~~~~~d~~~l~~~~~~~ 73 (450)
T PRK06111 2 FQKVLIA--NRGEIAVRIIRTCQK--LGIRTVAIYSEADRDALHVKMADEA----YLIGGPRVQESYLNLEKIIEIAKKT 73 (450)
T ss_pred cceEEEE--CCcHHHHHHHHHHHH--cCCeEEEEechhhccCcchhhCCEE----EEcCCCCccccccCHHHHHHHHHHh
Confidence 4677777 555555555555443 23566666544321 2223334332 1121110000001235677888888
Q ss_pred CCcEEEE
Q 022631 159 NVDFILL 165 (294)
Q Consensus 159 ~~DliV~ 165 (294)
++|+++.
T Consensus 74 ~id~I~p 80 (450)
T PRK06111 74 GAEAIHP 80 (450)
T ss_pred CCCEEEe
Confidence 8888774
No 244
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.24 E-value=1.7e+02 Score=22.42 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=27.4
Q ss_pred EEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCC---ccHHHHHhCCCCEEEcC
Q 022631 86 FVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDC---GGAEYARDNSIPVILFP 137 (294)
Q Consensus 86 l~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~---~~~~~A~~~gIP~~~~~ 137 (294)
+++|....+ ++++.| ..+.+.+-.|-++. .+..+|+.++||+....
T Consensus 9 lv~G~~~vl----kaIk~g--kakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 9 RVVGAKQTL----KAITNC--NVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred EEEchHHHH----HHHHcC--CeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 455644444 455655 34555555544331 35688999999997543
No 245
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=23.16 E-value=2.4e+02 Score=28.80 Aligned_cols=80 Identities=14% Similarity=0.058 Sum_probs=43.9
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCC--CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPD--CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE 157 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~--~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~ 157 (294)
.+|++|+ |.++....+...+ ..++-.+++++.|.... ....+...+.+-.+...+ +..++.+.+++
T Consensus 293 Gkrv~I~--gd~~~a~~l~~~L-~~ElGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~~---------D~~el~~~i~~ 360 (519)
T PRK02910 293 GKRVFVF--GDATHAVAAARIL-SDELGFEVVGAGTYLREDARWVRAAAKEYGDEALITD---------DYLEVEDAIAE 360 (519)
T ss_pred CCEEEEE--cCcHHHHHHHHHH-HHhcCCeEEEEecCCcchhHHHHHHHHhcCCCeEEec---------CHHHHHHHHHh
Confidence 4676665 4444444444433 22344677777663321 123344455553333322 12578888999
Q ss_pred cCCcEEEEeccccc
Q 022631 158 VNVDFILLAGYLKL 171 (294)
Q Consensus 158 ~~~DliV~agy~~i 171 (294)
.+||+++--.+.+.
T Consensus 361 ~~PdliiG~~~er~ 374 (519)
T PRK02910 361 AAPELVLGTQMERH 374 (519)
T ss_pred cCCCEEEEcchHHH
Confidence 99999996554443
No 246
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=23.11 E-value=1.6e+02 Score=23.17 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=23.1
Q ss_pred HHHHHHcCCCCceEEEEecCCCC---CccHHHHHhCCCCEEEc
Q 022631 97 IHAACLAGSVYGDVVVLVTNKPD---CGGAEYARDNSIPVILF 136 (294)
Q Consensus 97 ll~~~~~~~~~~eI~~Vvt~~~~---~~~~~~A~~~gIP~~~~ 136 (294)
.+++++.++ ...+.+-.|-++ ..+..+|++++||++.+
T Consensus 24 v~kai~~gk--aklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 24 TIKAIKLGK--AKLVIVASNCPKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 445566663 445544444332 13568899999998775
No 247
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=23.07 E-value=1.8e+02 Score=25.41 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHcCCCCceEEEEecCCCC-------CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc----CC
Q 022631 92 SNFRSIHAACLAGSVYGDVVVLVTNKPD-------CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV----NV 160 (294)
Q Consensus 92 s~l~~ll~~~~~~~~~~eI~~Vvt~~~~-------~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~----~~ 160 (294)
..+...++.++.... .+=++||+|... ..+..+++..|||++....++ | ..-+++++.+... ++
T Consensus 62 ~~~~~~~~~l~~~~~-~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kK--P--~~~~~i~~~~~~~~~~~~p 136 (168)
T PF09419_consen 62 PEYAEWLNELKKQFG-KDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKK--P--GCFREILKYFKCQKVVTSP 136 (168)
T ss_pred HHHHHHHHHHHHHCC-CCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCC--C--ccHHHHHHHHhhccCCCCc
Confidence 335555666664321 123678898742 235678899999987765332 2 1235677777543 46
Q ss_pred cEEEEeccccccCh
Q 022631 161 DFILLAGYLKLIPM 174 (294)
Q Consensus 161 DliV~agy~~ilp~ 174 (294)
+=++++|= |++.+
T Consensus 137 ~eiavIGD-rl~TD 149 (168)
T PF09419_consen 137 SEIAVIGD-RLFTD 149 (168)
T ss_pred hhEEEEcc-hHHHH
Confidence 65666663 55554
No 248
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=23.00 E-value=4.1e+02 Score=26.55 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=46.0
Q ss_pred EEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEE
Q 022631 85 VFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFIL 164 (294)
Q Consensus 85 Vl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV 164 (294)
|+.+|....+..+...... +++.++| -++.-.+..+..+.+|+.++.++.+. .+..-+++-+.++++++.++.
T Consensus 159 iiT~G~q~al~l~~~~l~~---pGd~v~v-E~PtY~~~~~~~~~~g~~~~~vp~d~---~G~~~e~le~~~~~~~~k~~y 231 (459)
T COG1167 159 VITSGAQQALDLLLRLLLD---PGDTVLV-EDPTYPGALQALEALGARVIPVPVDE---DGIDPEALEEALAQWKPKAVY 231 (459)
T ss_pred EEeCCHHHHHHHHHHHhCC---CCCEEEE-cCCCcHHHHHHHHHcCCcEEecCCCC---CCCCHHHHHHHHhhcCCcEEE
Confidence 3445544555544444332 3344332 22222356788999999999887643 345567777778888888887
Q ss_pred Eec
Q 022631 165 LAG 167 (294)
Q Consensus 165 ~ag 167 (294)
+.-
T Consensus 232 ~~P 234 (459)
T COG1167 232 VTP 234 (459)
T ss_pred ECC
Confidence 654
No 249
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=22.98 E-value=2.8e+02 Score=27.60 Aligned_cols=83 Identities=12% Similarity=0.239 Sum_probs=42.9
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhC---CCCEEEcCCCCCCCCCCChhHHHHHHH
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDN---SIPVILFPKTKDEPNGLSPNDLVAALS 156 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~---gIP~~~~~~~~~~~~~~~d~~l~~~L~ 156 (294)
++||.|+ |.|..-+.+...|.... ..+|.+. ++..... +.+.+. ++....++-. +.+++.+.|+
T Consensus 1 m~~ilvi--GaG~Vg~~va~~la~~~-d~~V~iA--dRs~~~~-~~i~~~~~~~v~~~~vD~~-------d~~al~~li~ 67 (389)
T COG1748 1 MMKILVI--GAGGVGSVVAHKLAQNG-DGEVTIA--DRSKEKC-ARIAELIGGKVEALQVDAA-------DVDALVALIK 67 (389)
T ss_pred CCcEEEE--CCchhHHHHHHHHHhCC-CceEEEE--eCCHHHH-HHHHhhccccceeEEeccc-------ChHHHHHHHh
Confidence 3566666 55666666666654432 2566443 3322112 233333 4666666532 2457777887
Q ss_pred hcCCcEEEEeccccccChhHHh
Q 022631 157 EVNVDFILLAGYLKLIPMELIR 178 (294)
Q Consensus 157 ~~~~DliV~agy~~ilp~~~l~ 178 (294)
+. |++|.+.= ..+...+++
T Consensus 68 ~~--d~VIn~~p-~~~~~~i~k 86 (389)
T COG1748 68 DF--DLVINAAP-PFVDLTILK 86 (389)
T ss_pred cC--CEEEEeCC-chhhHHHHH
Confidence 66 77776642 223334443
No 250
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=22.97 E-value=3.3e+02 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=16.4
Q ss_pred EEEEecCCCCC---------ccHHHHHhCCCCEEEcCCC
Q 022631 110 VVVLVTNKPDC---------GGAEYARDNSIPVILFPKT 139 (294)
Q Consensus 110 I~~Vvt~~~~~---------~~~~~A~~~gIP~~~~~~~ 139 (294)
+.-||+++++. ...+.|+++|+.++.++-.
T Consensus 28 fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~ 66 (110)
T PF04273_consen 28 FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVD 66 (110)
T ss_dssp --EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----
T ss_pred CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecC
Confidence 56788888762 1357899999999998854
No 251
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=22.95 E-value=1.7e+02 Score=27.47 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=48.2
Q ss_pred eeeeecCcccccCCCCcceeeecCCCCceeEEEEEeCCchHHH-----HHHHHHHcCCCCceEEEEecCCCCCc----cH
Q 022631 53 RLECVNFAEKVKNNGDKYEKDFDSGIKKKNLAVFVSGGGSNFR-----SIHAACLAGSVYGDVVVLVTNKPDCG----GA 123 (294)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIaVl~SG~gs~l~-----~ll~~~~~~~~~~eI~~Vvt~~~~~~----~~ 123 (294)
+.-|||-+.+.. ..-+.|++-.+ .-|-|++-|+|+-|. .....+.. ..+.+.+.|++.++..+ ..
T Consensus 6 iiKlGNig~s~~-idl~LDErAdR----edI~vrv~gsGaKm~pe~~e~~~~~~~~-~~~pdf~I~isPN~~~PGP~~AR 79 (276)
T PF01993_consen 6 IIKLGNIGTSVV-IDLLLDERADR----EDIDVRVVGSGAKMGPEDVEEVVTKMLK-EWDPDFVIVISPNAAAPGPTKAR 79 (276)
T ss_dssp EEEES--HHHHH-TTGGGSTTS------SSEEEEEEEEET--SHHHHHHHHHHHHH-HH--SEEEEE-S-TTSHHHHHHH
T ss_pred EEEecccchHHH-HHHHHHhhhcc----CCceEEEeccCCCCCHHHHHHHHHHHHH-hhCCCEEEEECCCCCCCCcHHHH
Confidence 455787776642 12235555333 334444445554432 22212211 11346788888777665 45
Q ss_pred HHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEe
Q 022631 124 EYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLA 166 (294)
Q Consensus 124 ~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~a 166 (294)
+.-.+.|||++.+....- ....+.|++.+.-+||+-
T Consensus 80 E~l~~~~iP~IvI~D~p~-------~k~kd~l~~~g~GYIivk 115 (276)
T PF01993_consen 80 EMLSAKGIPCIVISDAPT-------KKAKDALEEEGFGYIIVK 115 (276)
T ss_dssp HHHHHSSS-EEEEEEGGG-------GGGHHHHHHTT-EEEEET
T ss_pred HHHHhCCCCEEEEcCCCc-------hhhHHHHHhcCCcEEEEe
Confidence 667779999998864210 112356788777777754
No 252
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=22.95 E-value=2.6e+02 Score=24.76 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=41.0
Q ss_pred ceeEEEEEeCCc--------hHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCC-C-Ch-
Q 022631 80 KKNLAVFVSGGG--------SNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNG-L-SP- 148 (294)
Q Consensus 80 ~~rIaVl~SG~g--------s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~-~-~d- 148 (294)
|+||+|+.+-|= |..+.|...+.+. ..++ -|.|..+..+. +.-.=.|+.++.++.....+-+ + +|
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~--g~~v-~Vyc~~~~~~~-~~~~y~gv~l~~i~~~~~g~~~si~yd~ 76 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSK--GIDV-TVYCRSDYYPY-KEFEYNGVRLVYIPAPKNGSAESIIYDF 76 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcC--CceE-EEEEccCCCCC-CCcccCCeEEEEeCCCCCCchHHHHHHH
Confidence 578999876532 3344444444332 2333 45554433221 2223367777777643322111 0 11
Q ss_pred hHHHHHHH-----hcCCcEEEEeccc
Q 022631 149 NDLVAALS-----EVNVDFILLAGYL 169 (294)
Q Consensus 149 ~~l~~~L~-----~~~~DliV~agy~ 169 (294)
..+...+. +.+.|++.+.|+.
T Consensus 77 ~sl~~al~~~~~~~~~~~ii~ilg~~ 102 (185)
T PF09314_consen 77 LSLLHALRFIKQDKIKYDIILILGYG 102 (185)
T ss_pred HHHHHHHHHHhhccccCCEEEEEcCC
Confidence 12333332 1256788888875
No 253
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=22.93 E-value=2.9e+02 Score=26.76 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=38.7
Q ss_pred EEEecCCCC---Cc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEecccccc
Q 022631 111 VVLVTNKPD---CG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLI 172 (294)
Q Consensus 111 ~~Vvt~~~~---~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~il 172 (294)
++|||++.. .+ +.+..++.|+.+..++...-++.-..-.+.++.+++.++|.||.+|=|..+
T Consensus 31 ~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 99 (382)
T cd08187 31 VLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVI 99 (382)
T ss_pred EEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 566666421 22 345667788988777643222221223456677888999999988866655
No 254
>PRK11175 universal stress protein UspE; Provisional
Probab=22.91 E-value=1.7e+02 Score=26.61 Aligned_cols=63 Identities=11% Similarity=0.157 Sum_probs=37.7
Q ss_pred HHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccc---------cChhHHhcCCCCEEEEcC
Q 022631 123 AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKL---------IPMELIRAYPRSIVNIHP 189 (294)
Q Consensus 123 ~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~i---------lp~~~l~~~~~g~iNiHP 189 (294)
.+++++.|++.....-. .+...+++.+..++.++|++|+...++- ....+++..+..++-++|
T Consensus 229 ~~~~~~~~~~~~~~~v~----~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~ 300 (305)
T PRK11175 229 KALRQKFGIDEEQTHVE----EGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKP 300 (305)
T ss_pred HHHHHHhCCChhheeec----cCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcC
Confidence 35566778874211100 1112467888889999999998876552 244455555555565553
No 255
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=22.88 E-value=3.6e+02 Score=24.45 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHcCCCCceEEEEecCCCC-----CccHHHHHhCCCCEEEc
Q 022631 91 GSNFRSIHAACLAGSVYGDVVVLVTNKPD-----CGGAEYARDNSIPVILF 136 (294)
Q Consensus 91 gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~-----~~~~~~A~~~gIP~~~~ 136 (294)
|+.=.++-.+-..|-.+.-|.+=+.|.+. ..+.++|+++|+|++.+
T Consensus 141 GHTEasVdLarlAGl~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~~iti 191 (203)
T COG0108 141 GHTEAAVDLARLAGLKPAGVICEIMNDDGTMARLPELEEFAKEHGLPVITI 191 (203)
T ss_pred ChHHHHHHHHHHcCCCCcEEEEEEeCCCccccChHHHHHHHHHcCCcEEEH
Confidence 44444443444566545444444445432 13679999999999975
No 256
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=22.86 E-value=2.5e+02 Score=26.09 Aligned_cols=15 Identities=53% Similarity=0.899 Sum_probs=11.8
Q ss_pred HHHHHhCCCCEEEcC
Q 022631 123 AEYARDNSIPVILFP 137 (294)
Q Consensus 123 ~~~A~~~gIP~~~~~ 137 (294)
..+|++++||+++++
T Consensus 202 ~~l~~~~~i~i~Vfn 216 (238)
T COG0528 202 FSLARDNGIPIIVFN 216 (238)
T ss_pred HHHHHHcCCcEEEEe
Confidence 467888888888776
No 257
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=22.84 E-value=1.1e+02 Score=26.89 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=36.5
Q ss_pred CchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCc
Q 022631 90 GGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVD 161 (294)
Q Consensus 90 ~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~D 161 (294)
-|..++.+++. | --+++||-+....+..+|+++||++++....+ ....+.+.+++.+.+
T Consensus 40 DG~Gik~l~~~---G----i~vAIITGr~s~ive~Ra~~LGI~~~~qG~~d------K~~a~~~L~~~~~l~ 98 (170)
T COG1778 40 DGHGIKLLLKS---G----IKVAIITGRDSPIVEKRAKDLGIKHLYQGISD------KLAAFEELLKKLNLD 98 (170)
T ss_pred CcHHHHHHHHc---C----CeEEEEeCCCCHHHHHHHHHcCCceeeechHh------HHHHHHHHHHHhCCC
Confidence 55666654432 3 23688998766667899999999987765321 123444555555543
No 258
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=22.79 E-value=4.8e+02 Score=26.00 Aligned_cols=81 Identities=22% Similarity=0.171 Sum_probs=44.5
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCC-CCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKP-DCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV 158 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~-~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~ 158 (294)
.+||.|+ |+|.....++.+++.- ..+++++.++.+ ++....+|.+. +...+... ...-.+.+.+++..++.
T Consensus 5 ~~~vLi~--~~geia~~ii~aa~~l--G~~~v~~~s~~d~~~~~~~~aD~~---~~i~p~~~-~~~y~d~~~i~~~a~~~ 76 (467)
T PRK12833 5 IRKVLVA--NRGEIAVRIIRAAREL--GMRTVAACSDADRDSLAARMADEA---VHIGPSHA-AKSYLNPAAILAAARQC 76 (467)
T ss_pred CcEEEEE--CCcHHHHHHHHHHHHc--CCeEEEEECCCCCCChhHHhCCEE---EecCCCCc-cccccCHHHHHHHHHHh
Confidence 4565554 7777777777777643 456777766543 23444444332 11111110 00012346788899999
Q ss_pred CCcEEEEeccc
Q 022631 159 NVDFILLAGYL 169 (294)
Q Consensus 159 ~~DliV~agy~ 169 (294)
++|.|+- ||+
T Consensus 77 ~~daI~p-g~g 86 (467)
T PRK12833 77 GADAIHP-GYG 86 (467)
T ss_pred CCCEEEE-CCC
Confidence 9998874 554
No 259
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=22.73 E-value=3.2e+02 Score=26.46 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=21.0
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCC
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKP 118 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~ 118 (294)
+.||+|+..|+ --+..+.++.. ....++++|+...+
T Consensus 3 kIRVgIVG~Gn--IGr~~a~al~~-~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGN--LGRSVEKAIQQ-QPDMELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecH--HHHHHHHHHHh-CCCcEEEEEEcCCc
Confidence 57888886653 22333444432 22578999887653
No 260
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=22.70 E-value=1.7e+02 Score=28.70 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=42.2
Q ss_pred eEEEEecCCCC-------CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc-CCcEEEEeccccccChhHHhcC
Q 022631 109 DVVVLVTNKPD-------CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV-NVDFILLAGYLKLIPMELIRAY 180 (294)
Q Consensus 109 eI~~Vvt~~~~-------~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~-~~DliV~agy~~ilp~~~l~~~ 180 (294)
.+..+++.... ..+.+..+++|.+++.+-- ++-..+.|.++ ++|..|..++.| |+=+-...|
T Consensus 239 ~~giiv~tk~gQ~r~~~~~~l~k~~~~~g~~~~li~~---------~~i~p~~L~~f~~iD~~v~taCPR-i~iDd~~~f 308 (347)
T COG1736 239 SFGIIVSTKGGQRRLEVARELVKLLKEAGKEVYLIVV---------DEISPDKLANFDDIDAFVNTACPR-IPIDDGDRF 308 (347)
T ss_pred eEEEEEecccccCcHHHHHHHHHHHHHcCCceEEEEe---------cCCCHHHHhcccceeEEEEecCCC-cccchHhhh
Confidence 34555555432 1356888999999766532 12233567788 999999999998 444445566
Q ss_pred CCCEE
Q 022631 181 PRSIV 185 (294)
Q Consensus 181 ~~g~i 185 (294)
+..++
T Consensus 309 ~kPlL 313 (347)
T COG1736 309 KKPLL 313 (347)
T ss_pred CCccc
Confidence 55443
No 261
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.66 E-value=2.8e+02 Score=27.24 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=37.7
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEecC-CCCCcc----HHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEE
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVTN-KPDCGG----AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFI 163 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt~-~~~~~~----~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dli 163 (294)
|-|+.+..+..+...|+ + +.++++. +|...+ .....+.|||+..+. |..+-..+....+|.+
T Consensus 184 g~gtal~~i~~a~~~gk-~--f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~----------Dsa~~~~m~~~~Vd~V 250 (363)
T PRK05772 184 GLGTALAPVKLAKALGM-S--VSVIAPETRPWLQGSRLTVYELMEEGIKVTLIT----------DTAVGLVMYKDMVNNV 250 (363)
T ss_pred ccccHHHHHHHHHHCCC-e--EEEEECCCCccchhHHHHHHHHHHCCCCEEEEe----------hhHHHHHHhhcCCCEE
Confidence 34567777666655553 2 3344443 343322 123456899998875 2344445555679998
Q ss_pred EEec
Q 022631 164 LLAG 167 (294)
Q Consensus 164 V~ag 167 (294)
|+..
T Consensus 251 ivGA 254 (363)
T PRK05772 251 MVGA 254 (363)
T ss_pred EECc
Confidence 8643
No 262
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=22.57 E-value=1.1e+02 Score=29.19 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=33.2
Q ss_pred HHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccC
Q 022631 123 AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIP 173 (294)
Q Consensus 123 ~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp 173 (294)
.+.=+++|||+.-+-- ++..-.+.+.+.|++++||++|+.|---++.
T Consensus 122 l~~Ykql~i~a~G~~~----~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K 168 (287)
T PF05582_consen 122 LKVYKQLGIPAVGIHV----PEKEQPEKIYRLLEEYRPDILVITGHDGYLK 168 (287)
T ss_pred HHHHHHcCCceEEEEe----chHHhhHHHHHHHHHcCCCEEEEeCchhhhc
Confidence 4667889999764421 1122346788999999999999999755443
No 263
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=22.39 E-value=2.9e+02 Score=23.20 Aligned_cols=15 Identities=13% Similarity=-0.248 Sum_probs=9.8
Q ss_pred HHHHHhCCCCEEEcC
Q 022631 123 AEYARDNSIPVILFP 137 (294)
Q Consensus 123 ~~~A~~~gIP~~~~~ 137 (294)
.++|+.+|++...++
T Consensus 132 ~~la~a~G~~~~~v~ 146 (172)
T cd02004 132 DLVAEAFGGKGELVT 146 (172)
T ss_pred HHHHHHCCCeEEEEC
Confidence 456777777766654
No 264
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=22.35 E-value=1.7e+02 Score=24.96 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=25.6
Q ss_pred cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh----cCCcEEEEecc
Q 022631 122 GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE----VNVDFILLAGY 168 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~----~~~DliV~agy 168 (294)
+..+.++.|+.+.......+ +.+++.+.|++ .+.|++|+.|=
T Consensus 27 l~~~L~~~G~~v~~~~iv~D-----d~~~i~~~l~~~~~~~~~DlVIttGG 72 (163)
T TIGR02667 27 LVERLTEAGHRLADRAIVKD-----DIYQIRAQVSAWIADPDVQVILITGG 72 (163)
T ss_pred HHHHHHHCCCeEEEEEEcCC-----CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 45678888887665443221 13445555544 36899998764
No 265
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=22.21 E-value=91 Score=23.91 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=26.5
Q ss_pred cHHHHHhCCCCEEEcCCCCCCCCCCC-hhHHHHHHHhcCCcEEEEecc
Q 022631 122 GAEYARDNSIPVILFPKTKDEPNGLS-PNDLVAALSEVNVDFILLAGY 168 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~~~~~~~-d~~l~~~L~~~~~DliV~agy 168 (294)
-.++.+++||++..+......++..+ +.++.+.+++.++|++|..-+
T Consensus 22 Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 22 TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 45778899999655432111110001 124889999999999997654
No 266
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=22.19 E-value=6.1e+02 Score=25.45 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=45.5
Q ss_pred ceeEEEEEeCCc----hHHHHHHHHHH--cCCCCceEEEEecCCC-CC----ccHHHHHhCCCCEEEcCCCCCCCCCCCh
Q 022631 80 KKNLAVFVSGGG----SNFRSIHAACL--AGSVYGDVVVLVTNKP-DC----GGAEYARDNSIPVILFPKTKDEPNGLSP 148 (294)
Q Consensus 80 ~~rIaVl~SG~g----s~l~~ll~~~~--~~~~~~eI~~Vvt~~~-~~----~~~~~A~~~gIP~~~~~~~~~~~~~~~d 148 (294)
+.||.+|+.-+| |.+..|..... .+. -+ +++||... .- ....||+-.|+|+..+.. .
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~--~k-VaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~---------~ 269 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK--KK-VAIITTDTYRIGAVEQLKTYADIMGVPLEVVYS---------P 269 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC--cc-eEEEEeccchhhHHHHHHHHHHHhCCceEEecC---------H
Confidence 477888876544 66666654433 332 23 45555432 11 246799999999988753 2
Q ss_pred hHHHHHHHhc-CCcEEEEecccc
Q 022631 149 NDLVAALSEV-NVDFILLAGYLK 170 (294)
Q Consensus 149 ~~l~~~L~~~-~~DliV~agy~~ 170 (294)
+++.+.+..+ +.|+|++---|+
T Consensus 270 ~el~~ai~~l~~~d~ILVDTaGr 292 (407)
T COG1419 270 KELAEAIEALRDCDVILVDTAGR 292 (407)
T ss_pred HHHHHHHHHhhcCCEEEEeCCCC
Confidence 4455554443 457777654443
No 267
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=22.12 E-value=1.7e+02 Score=22.14 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCCceEEEEecCCCCCc----cHHHHHhCCCCEEEcC
Q 022631 94 FRSIHAACLAGSVYGDVVVLVTNKPDCG----GAEYARDNSIPVILFP 137 (294)
Q Consensus 94 l~~ll~~~~~~~~~~eI~~Vvt~~~~~~----~~~~A~~~gIP~~~~~ 137 (294)
+....+++..++ ..++.+-.|-.... +..+|++++||++.++
T Consensus 20 ~~~v~k~l~~~~--~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 20 IKEVLKALKKGK--AKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHTTC--ESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred hHHHHHHHHcCC--CcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 345556666663 34544444433322 3469999999999875
No 268
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=22.06 E-value=5.7e+02 Score=25.59 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=44.0
Q ss_pred ceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCC-CCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc
Q 022631 80 KKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKP-DCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV 158 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~-~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~ 158 (294)
.+||.|+ |+|-....++.+++.- ..++++|.+++. .+...++|.+. +.++.... ..-.+.+.+++..++.
T Consensus 2 ~kkiLi~--~~ge~a~~~i~aa~~l--G~~~v~v~~~~d~~~~~~~~AD~~----~~i~~~~~-~~y~d~~~i~~~a~~~ 72 (478)
T PRK08463 2 IHKILIA--NRGEIAVRVIRACRDL--HIKSVAIYTEPDRECLHVKIADEA----YRIGTDPI-KGYLDVKRIVEIAKAC 72 (478)
T ss_pred ccEEEEE--CCCHHHHHHHHHHHHc--CCeEEEEECCCccCCcchhhcCEE----EEcCCCch-hcccCHHHHHHHHHHh
Confidence 3566555 6666666677776642 457777877643 23333455431 22221100 0002345788888888
Q ss_pred CCcEEEEeccc
Q 022631 159 NVDFILLAGYL 169 (294)
Q Consensus 159 ~~DliV~agy~ 169 (294)
++|.|+. ||+
T Consensus 73 ~iDaI~p-g~g 82 (478)
T PRK08463 73 GADAIHP-GYG 82 (478)
T ss_pred CCCEEEE-CCC
Confidence 8887764 454
No 269
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=21.89 E-value=71 Score=30.08 Aligned_cols=20 Identities=15% Similarity=-0.046 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCcEEEEeccc
Q 022631 150 DLVAALSEVNVDFILLAGYL 169 (294)
Q Consensus 150 ~l~~~L~~~~~DliV~agy~ 169 (294)
.+.+.+++++||++++.+|.
T Consensus 76 ~~~~~l~~~kPdivi~~~~~ 95 (380)
T PRK00025 76 RLKRRLLAEPPDVFIGIDAP 95 (380)
T ss_pred HHHHHHHHcCCCEEEEeCCC
Confidence 56677889999999998863
No 270
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=21.83 E-value=2.1e+02 Score=28.88 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=35.4
Q ss_pred ceeEEEEEeCCchHHHH------HHHHHHc--CCC-CceEEEEecCCCCCccHHHHHhCCCCEEEcCC
Q 022631 80 KKNLAVFVSGGGSNFRS------IHAACLA--GSV-YGDVVVLVTNKPDCGGAEYARDNSIPVILFPK 138 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~------ll~~~~~--~~~-~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~ 138 (294)
+.-+.|++|.+|++.+. +.+.+.. |.. ..+=.+|+|++......++|++.|++++.++.
T Consensus 135 ~~tl~iViSKSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~~~f~ip~ 202 (448)
T PRK14097 135 KDFSINVISKSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGYETFVIPD 202 (448)
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCcCEEeCCC
Confidence 45566778998876543 3333322 211 11213455877665577899999999887764
No 271
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=21.76 E-value=4.9e+02 Score=23.04 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=24.1
Q ss_pred eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEE
Q 022631 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVI 134 (294)
Q Consensus 81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~ 134 (294)
+|+.|+ |+|.....-+..+... .++| .||+........+++++.+|.++
T Consensus 10 k~vlVv--GgG~va~rk~~~Ll~~--ga~V-tVvsp~~~~~l~~l~~~~~i~~~ 58 (205)
T TIGR01470 10 RAVLVV--GGGDVALRKARLLLKA--GAQL-RVIAEELESELTLLAEQGGITWL 58 (205)
T ss_pred CeEEEE--CcCHHHHHHHHHHHHC--CCEE-EEEcCCCCHHHHHHHHcCCEEEE
Confidence 566555 5555443333433332 2455 45554444345566666555444
No 272
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=21.68 E-value=2.2e+02 Score=27.09 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=34.0
Q ss_pred ceeEEEEEeCCchHHHHH--HHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCC
Q 022631 80 KKNLAVFVSGGGSNFRSI--HAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKT 139 (294)
Q Consensus 80 ~~rIaVl~SG~gs~l~~l--l~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~ 139 (294)
+.-+.|++|.+|.+...+ ++..++. ...++ ++|+ +..+.+.|+++|.+++.++..
T Consensus 66 ~~dlvI~iS~SG~t~e~~~a~~~A~~~--g~~ii-~iT~--~g~L~~~a~~~~~~~i~vP~~ 122 (308)
T TIGR02128 66 GKTLLIAVSYSGNTEETLSAVEEAKKK--GAKVI-AITS--GGRLEEMAKERGLDVIKIPKG 122 (308)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHc--CCEEE-EECC--CcHHHHHHHhcCCeEEEcCCC
Confidence 445788888877654432 3333322 33444 5554 235778999999999888753
No 273
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.68 E-value=4.5e+02 Score=25.98 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=47.9
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCc----cHHHHHhC--CCCEEEcCCCCCCCCCCChhHHH
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCG----GAEYARDN--SIPVILFPKTKDEPNGLSPNDLV 152 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~----~~~~A~~~--gIP~~~~~~~~~~~~~~~d~~l~ 152 (294)
..+|++|+ |.....-.+...+. ++-.+++++++...+.. ..++..+. +..+.++.. .+-.++.
T Consensus 302 ~gkrv~i~--g~~~~~~~la~~L~--elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~-------~d~~e~~ 370 (435)
T cd01974 302 HGKKFALY--GDPDFLIGLTSFLL--ELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPG-------KDLWHLR 370 (435)
T ss_pred CCCEEEEE--cChHHHHHHHHHHH--HCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEEC-------CCHHHHH
Confidence 35788776 33444444444443 34568888887543321 22334432 222222211 1236778
Q ss_pred HHHHhcCCcEEEEeccccccChh
Q 022631 153 AALSEVNVDFILLAGYLKLIPME 175 (294)
Q Consensus 153 ~~L~~~~~DliV~agy~~ilp~~ 175 (294)
+.+++.+||++|-..+.+.+..+
T Consensus 371 ~~i~~~~pDliiG~s~~~~~a~~ 393 (435)
T cd01974 371 SLLFTEPVDLLIGNTYGKYIARD 393 (435)
T ss_pred HHHhhcCCCEEEECccHHHHHHH
Confidence 88999999999988777655443
No 274
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.55 E-value=1.9e+02 Score=22.91 Aligned_cols=20 Identities=5% Similarity=-0.104 Sum_probs=15.1
Q ss_pred cHHHHHhCCCCEEEcCCCCC
Q 022631 122 GAEYARDNSIPVILFPKTKD 141 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~ 141 (294)
+.+.|...|||+..++...|
T Consensus 64 i~~~~~~~~ipv~~I~~~~Y 83 (99)
T cd05565 64 LKKDTDRLGIKLVTTTGKQY 83 (99)
T ss_pred HHHHhhhcCCCEEEeCHHHH
Confidence 56788889999988875433
No 275
>COG2403 Predicted GTPase [General function prediction only]
Probab=21.32 E-value=2.2e+02 Score=28.52 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=49.2
Q ss_pred CceeEEEEEeCCc--hHHHHHHHHHHcCCCCceEEEEecC-------CCC-CccHHHHHhCCCCEEEcCCCCCCCCCCCh
Q 022631 79 KKKNLAVFVSGGG--SNFRSIHAACLAGSVYGDVVVLVTN-------KPD-CGGAEYARDNSIPVILFPKTKDEPNGLSP 148 (294)
Q Consensus 79 ~~~rIaVl~SG~g--s~l~~ll~~~~~~~~~~eI~~Vvt~-------~~~-~~~~~~A~~~gIP~~~~~~~~~~~~~~~d 148 (294)
.++|+.+|.-|+- ++++..+... ...+++++.+. +.- ......-..+|||++...+ -
T Consensus 5 a~kRviiLgaggrdfhv~n~a~r~~----~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~---------~ 71 (449)
T COG2403 5 ARKRVIILGAGGRDFHVFNVALRDN----PEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKD---------Y 71 (449)
T ss_pred CceeEEEEeccCcccchhhHHhccC----CcceEEEEEEEEecCCccccCCCCcccccccCCcccccccc---------H
Confidence 3678888866632 5565544332 12344443321 111 1133455678999875321 2
Q ss_pred hHHHHHHHhcCCcEEEEeccccccChhHH
Q 022631 149 NDLVAALSEVNVDFILLAGYLKLIPMELI 177 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy~~ilp~~~l 177 (294)
+++.+.|++.++|++|++ |..+-++...
T Consensus 72 ~~lek~ire~~VD~~Vla-ySDvs~e~v~ 99 (449)
T COG2403 72 DDLEKIIREKDVDIVVLA-YSDVSYEHVF 99 (449)
T ss_pred HHHHHHHHHcCCCeEEEE-cccCCHHHHH
Confidence 678899999999988876 5555544443
No 276
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=21.27 E-value=4.5e+02 Score=26.06 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=40.5
Q ss_pred EEEEeCCch-HHHHHHHHHHcCCCCceEEEEecCCCC-CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh-cCC
Q 022631 84 AVFVSGGGS-NFRSIHAACLAGSVYGDVVVLVTNKPD-CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE-VNV 160 (294)
Q Consensus 84 aVl~SG~gs-~l~~ll~~~~~~~~~~eI~~Vvt~~~~-~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~-~~~ 160 (294)
.++.+|+|+ .+++-+..+.. +++-++|+.|-.- ....+.|+.+|.++..+... +. +....+++.+.|++ -++
T Consensus 58 ~~ll~gsGt~amEAav~sl~~---pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~-wg-~~v~p~~v~~~L~~~~~~ 132 (383)
T COG0075 58 VVLLSGSGTLAMEAAVASLVE---PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVE-WG-EAVDPEEVEEALDKDPDI 132 (383)
T ss_pred EEEEcCCcHHHHHHHHHhccC---CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCC-CC-CCCCHHHHHHHHhcCCCc
Confidence 344455554 35544444332 2344566655331 23467888888888877642 11 22345566666662 245
Q ss_pred cEEEEe
Q 022631 161 DFILLA 166 (294)
Q Consensus 161 DliV~a 166 (294)
+++.+.
T Consensus 133 ~~V~~v 138 (383)
T COG0075 133 KAVAVV 138 (383)
T ss_pred cEEEEE
Confidence 555444
No 277
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.14 E-value=8.8e+02 Score=24.63 Aligned_cols=147 Identities=15% Similarity=0.147 Sum_probs=87.2
Q ss_pred cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccCh-hH----Hhc-----CCCCEEEEcCCC
Q 022631 122 GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPM-EL----IRA-----YPRSIVNIHPSL 191 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp~-~~----l~~-----~~~g~iNiHPSl 191 (294)
+++.|.+.+||++.-. +.-.|-.+ -.+-++..++.++|+||+---+|.=-+ ++ ++. +..-++-+-.|.
T Consensus 148 LkqnA~k~~iP~ygsy-te~dpv~i-a~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 148 LKQNATKARVPFYGSY-TEADPVKI-ASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HHHHhHhhCCeeEecc-cccchHHH-HHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 5688999999987531 11111111 123456778889999998877765221 22 221 122233333333
Q ss_pred CCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEEE---Ee---CCC---------------------C
Q 022631 192 LPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRV---VP---VLW---------------------N 244 (294)
Q Consensus 192 LP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~~---~~---I~~---------------------~ 244 (294)
|-++ -.+-.|+..-...+++-+-.+|-.--.|--|.-.. .| |.- -
T Consensus 226 -----GQaa---e~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGm 297 (483)
T KOG0780|consen 226 -----GQAA---EAQARAFKETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGM 297 (483)
T ss_pred -----cHhH---HHHHHHHHHhhccceEEEEecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhcc
Confidence 5432 23444666667778888888887666665443321 11 111 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec
Q 022631 245 DTAEDLAARVLLEEHRLYVDVASALCEERVVWRE 278 (294)
Q Consensus 245 dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~ 278 (294)
-+.+.|.+++.++..+--.+.+++|..|++++++
T Consensus 298 GDi~glvek~~ev~~~d~~el~~kl~~gkFtlrd 331 (483)
T KOG0780|consen 298 GDIEGLVEKVQEVGKDDAKELVEKLKQGKFTLRD 331 (483)
T ss_pred ccHHHHHHHHHHHhhhhHHHHHHHHHhCCccHHH
Confidence 2366778888888877778888999999988764
No 278
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=21.12 E-value=3.1e+02 Score=24.45 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCCh-hH---HHHHHHhcC--CcEEEE
Q 022631 92 SNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSP-ND---LVAALSEVN--VDFILL 165 (294)
Q Consensus 92 s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d-~~---l~~~L~~~~--~DliV~ 165 (294)
+..+.|+..++.+ -++-+++--+=+..+.+.|++.|.-+..+++.+. +.+..+ +. +-..+++.+ ||+|+=
T Consensus 74 H~Ar~lL~~~~~~---p~iraa~NIrY~~~~v~~~~~~G~~v~~~dR~~E-p~~v~~~e~~w~i~~a~~~~~~~PDVIyd 149 (181)
T COG1992 74 HTARVLLTVMKHD---PDIRAAINIRYSEEVVEALKDLGLAVSSFDRSKE-PEEVEEKEGGWGIESAFRELGGAPDVIYD 149 (181)
T ss_pred HHHHHHHHHHhhC---CCceEEeeecccHHHHHHHHhcCceEEEeCcccC-chhhhccccchHHHHHHHhcCCCCCEEEe
Confidence 4456666665543 3455555433345577999999999999987543 222111 11 445677777 898875
Q ss_pred ec
Q 022631 166 AG 167 (294)
Q Consensus 166 ag 167 (294)
-|
T Consensus 150 ~G 151 (181)
T COG1992 150 LG 151 (181)
T ss_pred CC
Confidence 54
No 279
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=20.96 E-value=2.5e+02 Score=29.16 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=44.0
Q ss_pred CceeEEEEEeCCch-----HHHHHHHHHHcCCCCceEEEEecCCCC-----------CccHHHHHhCCCCEEEcCCCCCC
Q 022631 79 KKKNLAVFVSGGGS-----NFRSIHAACLAGSVYGDVVVLVTNKPD-----------CGGAEYARDNSIPVILFPKTKDE 142 (294)
Q Consensus 79 ~~~rIaVl~SG~gs-----~l~~ll~~~~~~~~~~eI~~Vvt~~~~-----------~~~~~~A~~~gIP~~~~~~~~~~ 142 (294)
.++||+|+.|||.+ .+..++++........+|.++.--... ..+..+...=|..++-..+.+..
T Consensus 66 ~~~rIgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~ 145 (539)
T TIGR02477 66 QPLKIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIE 145 (539)
T ss_pred cceEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCC
Confidence 46899999999664 234454444332223456555421110 01122333333333322222211
Q ss_pred CCCCChhHHHHHHHhcCCcEEEEec
Q 022631 143 PNGLSPNDLVAALSEVNVDFILLAG 167 (294)
Q Consensus 143 ~~~~~d~~l~~~L~~~~~DliV~ag 167 (294)
....-+.+++.|+++++|.+|+.|
T Consensus 146 -~~e~~~~~~~~l~~~~Id~LviIG 169 (539)
T TIGR02477 146 -TEEQFAKALTTAKKLKLDGLVIIG 169 (539)
T ss_pred -CHHHHHHHHHHHHHcCCCEEEEeC
Confidence 111124578889999999888776
No 280
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=20.90 E-value=4.9e+02 Score=25.22 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=44.2
Q ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCCCC--Cc----cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcE
Q 022631 89 GGGSNFRSIHAACLAGSVYGDVVVLVTNKPD--CG----GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDF 162 (294)
Q Consensus 89 G~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~--~~----~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~Dl 162 (294)
|.|. +..+-+.+..- . +-++|||++.- .+ +.+..++.|+.+..++...-.+....-.+..+..++.++|.
T Consensus 7 G~g~-l~~l~~~~~~~--g-~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~ 82 (386)
T cd08191 7 GAGQ-RRQLPRLAARL--G-SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDV 82 (386)
T ss_pred CcCH-HHHHHHHHHHc--C-CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 5443 45554444331 1 34567776431 12 23456678998887764321111111123456677889999
Q ss_pred EEEecccccc
Q 022631 163 ILLAGYLKLI 172 (294)
Q Consensus 163 iV~agy~~il 172 (294)
||..|=|..+
T Consensus 83 IIaiGGGS~i 92 (386)
T cd08191 83 IIGLGGGSCI 92 (386)
T ss_pred EEEeCCchHH
Confidence 9999876655
No 281
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=20.77 E-value=1.3e+02 Score=30.48 Aligned_cols=81 Identities=20% Similarity=0.074 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCC------cchHHHHHHHcCCCEEEEEEEE
Q 022631 150 DLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYY------GMKVHKAVIASGARYSGPTIHF 223 (294)
Q Consensus 150 ~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~y------g~pv~~~aI~~G~~~tGvTvH~ 223 (294)
.+-++|++.+||++|+++--+ ...=+++..+-=+|.+-.+.-|.-.|.++- |.|-.-+-|.+.....|+.+..
T Consensus 186 ~~r~~l~~~~PDVvVi~~nDH-~~~Ff~d~mP~FaIG~~~~~~p~d~g~G~~~v~~~pG~peLA~~I~~~L~~~GfD~a~ 264 (444)
T PRK13372 186 LSREWAKEHLPDVIILVYNDH-ATAFDLEIIPTFAIGTAAEFPPADEGWGPRPVPDVIGHPELAAHIAQSVIQDDFDLTI 264 (444)
T ss_pred HHHHHHHHhCCCEEEEEccch-hhhcCcccCCCeEEEEccccCCCcccCCCCCCCCCCCCHHHHHHHHHHHHhcCCChhh
Confidence 455789999999999986422 222233333434677766666544332210 0122112244444556665555
Q ss_pred e-cCCCCCC
Q 022631 224 V-DEHYDTG 231 (294)
Q Consensus 224 v-~~~~D~G 231 (294)
. +-++|.|
T Consensus 265 ~~erglDHG 273 (444)
T PRK13372 265 VNEMDVDHG 273 (444)
T ss_pred ccCCCCCch
Confidence 4 4588888
No 282
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=20.74 E-value=2.4e+02 Score=27.43 Aligned_cols=66 Identities=24% Similarity=0.308 Sum_probs=46.8
Q ss_pred EEEEecCCC-C-CccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccChhHHhcCC
Q 022631 110 VVVLVTNKP-D-CGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYP 181 (294)
Q Consensus 110 I~~Vvt~~~-~-~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~~~ 181 (294)
++.|+++.. | +....+|+..+.|++..+ | +.+.+.+.+.+.+++||+++..|=..=+++..=+..+
T Consensus 30 ~VIlvsDn~aD~~lA~~iaellNA~Vlttp---w---g~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lk 97 (337)
T COG2247 30 VVILVSDNEADLLLALPIAELLNAPVLTTP---W---GIYNESVLDEIIELNPDLVLIIGGPIAVSPNYENALK 97 (337)
T ss_pred EEEEecchHHHHHHhhHHHHHhCCeeEecC---c---ccccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHH
Confidence 444555432 1 345689999999998543 1 2345677888889999999999988888887665554
No 283
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=20.71 E-value=1.4e+02 Score=23.04 Aligned_cols=38 Identities=34% Similarity=0.440 Sum_probs=25.6
Q ss_pred cHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCcEEEEeccccccChhHHhc
Q 022631 122 GAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRA 179 (294)
Q Consensus 122 ~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~DliV~agy~~ilp~~~l~~ 179 (294)
+.+.|+++|||++. +..+.+.|- +.+ -+..||+++.+.
T Consensus 32 I~~~A~e~~VPi~~------------~~~LAr~L~--~~~------ig~~IP~~ly~a 69 (82)
T TIGR00789 32 IIEIAKKHGIPIVE------------DPDLVDVLL--KLD------LDDEIPEELYEV 69 (82)
T ss_pred HHHHHHHcCCCEEe------------CHHHHHHHH--hCC------CCCccCHHHHHH
Confidence 46899999999985 346666663 333 246688777653
No 284
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=20.55 E-value=5.8e+02 Score=24.20 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=37.2
Q ss_pred EEEeC-CchHHHHHHHHHHcCCCCceEEEEecCCCCCcc---HHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCC
Q 022631 85 VFVSG-GGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGG---AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNV 160 (294)
Q Consensus 85 Vl~SG-~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~---~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~ 160 (294)
||.-| +++.+..|..+...|+ +++|.++= .+|...+ .....+.|||+..+.. ..+...+. ++
T Consensus 124 ILT~~~S~tv~~~l~~A~~~~k-~~~V~v~E-srP~~~G~~~a~~L~~~GI~vtlI~D----------sav~~~m~--~v 189 (310)
T PRK08535 124 IMTHCNSSAALSVIKTAHEQGK-DIEVIATE-TRPRNQGHITAKELAEYGIPVTLIVD----------SAVRYFMK--DV 189 (310)
T ss_pred EEEeCCcHHHHHHHHHHHHCCC-eEEEEEec-CCchhhHHHHHHHHHHCCCCEEEEeh----------hHHHHHHH--hC
Confidence 45445 4566666666655553 44544222 2333222 2445678999988753 34444454 38
Q ss_pred cEEEEe
Q 022631 161 DFILLA 166 (294)
Q Consensus 161 DliV~a 166 (294)
|.+++.
T Consensus 190 d~VivG 195 (310)
T PRK08535 190 DKVVVG 195 (310)
T ss_pred CEEEEC
Confidence 887753
No 285
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=20.42 E-value=6.5e+02 Score=23.81 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=39.0
Q ss_pred EEEeC-CchHHHHHHHHHHcCCCCceEEEEecCCCCCcc---HHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCC
Q 022631 85 VFVSG-GGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGG---AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNV 160 (294)
Q Consensus 85 Vl~SG-~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~---~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~ 160 (294)
||.-| +++.+..|..+...|+ +++|. |.-.+|...+ .+...+.|||+..+.. ..+...+. ++
T Consensus 119 ILT~~~S~tv~~~l~~a~~~~~-~f~V~-v~EsrP~~~G~~~a~~L~~~gI~vtlI~D----------sa~~~~m~--~v 184 (301)
T TIGR00511 119 VMTHCNSEAALSVIKTAFEQGK-DIEVI-ATETRPRKQGHITAKELRDYGIPVTLIVD----------SAVRYFMK--EV 184 (301)
T ss_pred EEEECCcHHHHHHHHHHHHcCC-cEEEE-EecCCCcchHHHHHHHHHHCCCCEEEEeh----------hHHHHHHH--hC
Confidence 55445 4455555555555543 45554 2223443332 3455668999988753 34444454 48
Q ss_pred cEEEEecccccc
Q 022631 161 DFILLAGYLKLI 172 (294)
Q Consensus 161 DliV~agy~~il 172 (294)
|.+++. --.++
T Consensus 185 d~VivG-ad~v~ 195 (301)
T TIGR00511 185 DHVVVG-ADAIT 195 (301)
T ss_pred CEEEEC-ccEEe
Confidence 888753 33444
No 286
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=20.41 E-value=3.2e+02 Score=22.31 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=19.2
Q ss_pred eeEEEEEeCCchHH---HHHHHHHHcCCCCceEEEEecCCC
Q 022631 81 KNLAVFVSGGGSNF---RSIHAACLAGSVYGDVVVLVTNKP 118 (294)
Q Consensus 81 ~rIaVl~SG~gs~l---~~ll~~~~~~~~~~eI~~Vvt~~~ 118 (294)
.+.+|.+.|-|+.+ +.+..+... +..+..||.|..
T Consensus 64 ~~~vv~~~GDG~~~~~~~~l~ta~~~---~~~~~~iv~nN~ 101 (168)
T cd00568 64 DRPVVCIAGDGGFMMTGQELATAVRY---GLPVIVVVFNNG 101 (168)
T ss_pred CCcEEEEEcCcHHhccHHHHHHHHHc---CCCcEEEEEECC
Confidence 45667777877654 333333333 234666666654
No 287
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=20.35 E-value=1.6e+02 Score=27.02 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=30.7
Q ss_pred EEEeCCchHHHHHHHHH----HcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCC
Q 022631 85 VFVSGGGSNFRSIHAAC----LAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPK 138 (294)
Q Consensus 85 Vl~SG~gs~l~~ll~~~----~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~ 138 (294)
|+.-|+||...-+++.+ +.+.+ +|.+|-|.. .-..+|+++|||+..++.
T Consensus 24 vvGLGTGSTv~~~i~~L~~~~~~~~l--~i~~VptS~---~t~~~a~~~Gipl~~l~~ 76 (228)
T PRK13978 24 TLGIGTGSTMELLLPQMAQLIKERGY--NITGVCTSN---KIAFLAKELGIKICEIND 76 (228)
T ss_pred EEEeCchHHHHHHHHHHHHHhhccCc--cEEEEeCcH---HHHHHHHHcCCcEechhh
Confidence 35567777766555543 33333 477775532 235789999999887654
No 288
>PRK00865 glutamate racemase; Provisional
Probab=20.34 E-value=1.2e+02 Score=28.02 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=52.0
Q ss_pred ceeEEEEEeCCc--hHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHh
Q 022631 80 KKNLAVFVSGGG--SNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSE 157 (294)
Q Consensus 80 ~~rIaVl~SG~g--s~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~ 157 (294)
..+|+||=||-| |.++.|.+... +.++..+. ...+.|+=.-+.. +- ...-.++++.|++
T Consensus 5 ~~~IgvfDSGiGGLtvl~~i~~~lp----~~~~iY~~------------D~~~~PYG~ks~~--~i-~~~~~~~~~~L~~ 65 (261)
T PRK00865 5 NAPIGVFDSGVGGLTVLREIRRLLP----DEHIIYVG------------DTARFPYGEKSEE--EI-RERTLEIVEFLLE 65 (261)
T ss_pred CCeEEEEECCccHHHHHHHHHHHCC----CCCEEEEe------------cCCCCCCCCCCHH--HH-HHHHHHHHHHHHh
Confidence 457999999944 66777665531 22344332 2333332210000 00 0012356677888
Q ss_pred cCCcEEEEeccccc--cChhHHhcCCCCEEEEcCCCCCC
Q 022631 158 VNVDFILLAGYLKL--IPMELIRAYPRSIVNIHPSLLPA 194 (294)
Q Consensus 158 ~~~DliV~agy~~i--lp~~~l~~~~~g~iNiHPSlLP~ 194 (294)
.++|.+|++.+.-= .-+.+-+.++..+|++-|+..+.
T Consensus 66 ~g~d~iVIaCNTa~~~~l~~lr~~~~iPvigi~~a~~~a 104 (261)
T PRK00865 66 YGVKMLVIACNTASAVALPDLRERYDIPVVGIVPAIKPA 104 (261)
T ss_pred CCCCEEEEeCchHHHHHHHHHHHhCCCCEEeeHHHHHHH
Confidence 89999999987521 11344445566788876665443
No 289
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.13 E-value=4.5e+02 Score=25.28 Aligned_cols=136 Identities=16% Similarity=0.182 Sum_probs=75.2
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCC----ccHHHHHhCCCCEEEcCCCCCCCCCCChhH---H
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDC----GGAEYARDNSIPVILFPKTKDEPNGLSPND---L 151 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~----~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~---l 151 (294)
+..|+++++..+-.+.+.+-.+...| .+++.|.+...+. ...++|++.|..+...-.... ...++. .
T Consensus 75 ~~~~~~~ll~pg~~~~~dl~~a~~~g---vd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~---~~~~e~l~~~ 148 (333)
T TIGR03217 75 KRAKVAVLLLPGIGTVHDLKAAYDAG---ARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSH---MTPPEKLAEQ 148 (333)
T ss_pred CCCEEEEEeccCccCHHHHHHHHHCC---CCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEccc---CCCHHHHHHH
Confidence 35788877643223455554444444 3566666654443 245889999988654321111 112333 4
Q ss_pred HHHHHhcCCcEEEEec-cccccChhHHhcCC--------CCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEE
Q 022631 152 VAALSEVNVDFILLAG-YLKLIPMELIRAYP--------RSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIH 222 (294)
Q Consensus 152 ~~~L~~~~~DliV~ag-y~~ilp~~~l~~~~--------~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH 222 (294)
.+.+.+.++|.+.++- ++...|.++-+.+. .--|.+|.=- -.|.+ .-...+|+..|.+..=+|+.
T Consensus 149 a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hn---nlGla---~ANslaAi~aGa~~iD~Sl~ 222 (333)
T TIGR03217 149 AKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHH---NLSLA---VANSIAAIEAGATRIDASLR 222 (333)
T ss_pred HHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCC---CCchH---HHHHHHHHHhCCCEEEeecc
Confidence 4556678888766654 67888887754332 1235555432 22433 11223468888887666666
Q ss_pred EecC
Q 022631 223 FVDE 226 (294)
Q Consensus 223 ~v~~ 226 (294)
=+-+
T Consensus 223 G~G~ 226 (333)
T TIGR03217 223 GLGA 226 (333)
T ss_pred cccc
Confidence 5544
No 290
>PRK10799 metal-binding protein; Provisional
Probab=20.13 E-value=2.4e+02 Score=25.78 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=31.1
Q ss_pred CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCC
Q 022631 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKT 139 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~ 139 (294)
..+||||+ +|+|..+ +-++...| .+ +.||..-.-.....|++.|+.++.+.+.
T Consensus 164 ~i~rVAi~-~GsG~~~--i~~a~~~g---aD--~~ITGd~k~h~~~~A~~~gl~li~~GH~ 216 (247)
T PRK10799 164 VVQRVAWC-TGGGQSF--IDSAARFG---VD--AFITGEVSEQTIHSAREQGLHFYAAGHH 216 (247)
T ss_pred cccEEEEE-CCchHHH--HHHHHHcC---CC--EEEECCcchHHHHHHHHCCCeEEEcCch
Confidence 46788887 5655533 22332222 23 3566433322346789999999988874
No 291
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=20.09 E-value=1.1e+02 Score=28.14 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=22.9
Q ss_pred hHHHHHHHhcCCcEEEEeccccccC-----hhHHhcCCCCEEEE
Q 022631 149 NDLVAALSEVNVDFILLAGYLKLIP-----MELIRAYPRSIVNI 187 (294)
Q Consensus 149 ~~l~~~L~~~~~DliV~agy~~ilp-----~~~l~~~~~g~iNi 187 (294)
...-+.++++++|++|..+=.--.| .++++.....++-+
T Consensus 50 aav~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~Paiii 93 (277)
T COG1927 50 AAVTEMLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIII 93 (277)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEe
Confidence 3445678899999999776433333 23444333444444
No 292
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=20.00 E-value=2e+02 Score=27.42 Aligned_cols=55 Identities=24% Similarity=0.374 Sum_probs=34.6
Q ss_pred CceeEEEEEeCCchHHHHH--HHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCC
Q 022631 79 KKKNLAVFVSGGGSNFRSI--HAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPK 138 (294)
Q Consensus 79 ~~~rIaVl~SG~gs~l~~l--l~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~ 138 (294)
.+.-++|++|.+|.+-+.+ ++..+.. ...++ +||+. ..+.++|..+|.|++.++.
T Consensus 77 ~~~dlvI~iS~SG~T~e~~~a~~~a~~~--ga~vI-aIT~~--~~L~~~a~~~~~~~i~ip~ 133 (337)
T PRK08674 77 DEKTLVIAVSYSGNTEETLSAVEQALKR--GAKII-AITSG--GKLKEMAKEHGLPVIIVPG 133 (337)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHC--CCeEE-EECCC--chHHHHHHhcCCeEEEeCC
Confidence 3556888888887665433 2333322 23444 45542 3577899999999998863
Done!