Query 022632
Match_columns 294
No_of_seqs 243 out of 574
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:37:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 95.9 0.016 5.4E-07 45.6 6.3 57 174-254 7-63 (89)
2 1wmh_B Partitioning defective- 95.8 0.031 1E-06 44.0 7.6 70 173-265 6-76 (86)
3 2kkc_A Sequestosome-1; P62, PB 94.1 0.09 3.1E-06 42.3 6.0 60 174-255 6-80 (102)
4 2ktr_A Sequestosome-1; autopha 92.5 0.26 8.9E-06 40.6 6.3 60 174-255 21-95 (117)
5 1q1o_A Cell division control p 89.9 0.95 3.2E-05 36.2 7.0 74 174-265 6-86 (98)
6 1pqs_A Cell division control p 79.9 2.4 8.3E-05 32.2 4.7 57 191-265 8-65 (77)
7 2bkf_A Zinc-finger protein NBR 79.6 5.1 0.00017 31.5 6.5 55 174-253 7-61 (87)
8 1oey_A P67-PHOX, neutrophil cy 78.1 9.6 0.00033 29.4 7.6 70 174-269 6-78 (83)
9 1wj6_A KIAA0049 protein, RSGI 77.2 4.5 0.00016 32.6 5.7 64 174-264 15-78 (101)
10 1oey_J P40-PHOX, neutrophil cy 76.5 3.6 0.00012 33.5 4.9 41 190-255 28-68 (107)
11 1e8p_A Endoglucanase, dockerin 58.0 2.7 9.2E-05 29.5 0.5 13 239-251 20-32 (46)
12 2npt_A Dual specificity mitoge 41.1 56 0.0019 26.2 5.7 57 174-254 15-72 (106)
13 2j4m_A Endoglucanase 45A; dock 29.8 10 0.00036 30.4 -0.2 13 239-251 21-33 (100)
14 2i7u_A Four-alpha-helix bundle 20.2 15 0.00052 26.4 -0.8 10 6-15 24-33 (62)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.92 E-value=0.016 Score=45.64 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=44.0
Q ss_pred ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEcc
Q 022632 174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG 253 (294)
Q Consensus 174 ~fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVG 253 (294)
.=|||+..|.-+ .+.+...-+|++|...|.++|. +. ....+++.|.|.|||+.-+-
T Consensus 7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~-----~~-----------------~~~~f~lky~DEeGD~itis 62 (89)
T 1vd2_A 7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCS-----FD-----------------NEQLFTMKWIDEEGDPCTVS 62 (89)
T ss_dssp EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTT-----CC-----------------SSCCEEEEECCSSSCCEECC
T ss_pred EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhC-----CC-----------------CCCeEEEEEECCCCCccccc
Confidence 689999999744 4444446699999999999996 21 12468999999999997765
Q ss_pred C
Q 022632 254 D 254 (294)
Q Consensus 254 D 254 (294)
.
T Consensus 63 S 63 (89)
T 1vd2_A 63 S 63 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.84 E-value=0.031 Score=43.97 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=52.5
Q ss_pred cceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEc
Q 022632 173 LGFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLV 252 (294)
Q Consensus 173 ~~fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLV 252 (294)
..-||...|..--=-.||-....+|++|..-|+++|. +. ..+|++.|.|.|||++=+
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~-----L~------------------~~~f~i~Y~D~dGDLlpI 62 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ-----IP------------------GLDVLLGYTDAHGDLLPL 62 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT-----CT------------------TCCCEEEEECTTSCEEEC
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC-----CC------------------CCCEEEEEECCCCCEeee
Confidence 3678888888743335565677899999999999995 21 146899999999999988
Q ss_pred cCC-ChHHHhhccc
Q 022632 253 GDV-PWRMFISSVK 265 (294)
Q Consensus 253 GDv-PWemFv~svK 265 (294)
=+. -..+=+.++|
T Consensus 63 nnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 63 TNDDSLHRALASGP 76 (86)
T ss_dssp CSHHHHHHHTTSSS
T ss_pred cCHHHHHHHHHhCC
Confidence 754 4445556666
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=94.14 E-value=0.09 Score=42.29 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=44.3
Q ss_pred ceeEEEecCc----ccceeeecCC-----------CCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCce
Q 022632 174 GFVKVNMDGV----PIGRKVDLNA-----------HASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEF 238 (294)
Q Consensus 174 ~fVKV~MdG~----pigRKVDL~~-----------~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~sey 238 (294)
+-||++..|. .==|++-|.. ..+|++|...++++|.. + . +.+|
T Consensus 6 ~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~----l----------------~--~~~f 63 (102)
T 2kkc_A 6 LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA----L----------------R--PGGF 63 (102)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT----S----------------C--SSCE
T ss_pred EEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc----c----------------C--CCcE
Confidence 6789998752 2336665542 24899999999999961 1 1 2479
Q ss_pred EEEEEcCCCCeEEccCC
Q 022632 239 VLTYEDKEGDWMLVGDV 255 (294)
Q Consensus 239 vltYeD~eGDwMLVGDv 255 (294)
+|.|.|.|||+.-+-+.
T Consensus 64 ~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 64 QAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEECTTCCEEEECSH
T ss_pred EEEEECCCCCEEEecCH
Confidence 99999999999888764
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=92.49 E-value=0.26 Score=40.62 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=44.3
Q ss_pred ceeEEEecCc----ccceeeecCC-----------CCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCce
Q 022632 174 GFVKVNMDGV----PIGRKVDLNA-----------HASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEF 238 (294)
Q Consensus 174 ~fVKV~MdG~----pigRKVDL~~-----------~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~sey 238 (294)
+-||++..|. .==|++-|.. -.+|++|...++++|.. + . +..|
T Consensus 21 l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~----L----------------~--~~~f 78 (117)
T 2ktr_A 21 LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA----L----------------R--PGGF 78 (117)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT----S----------------C--SSCE
T ss_pred EEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc----c----------------C--CCcE
Confidence 7899999741 1226655541 35999999999999951 1 1 2469
Q ss_pred EEEEEcCCCCeEEccCC
Q 022632 239 VLTYEDKEGDWMLVGDV 255 (294)
Q Consensus 239 vltYeD~eGDwMLVGDv 255 (294)
+|.|.|.|||+.-+-..
T Consensus 79 ~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 79 QAHYRAERGDLVAFSSD 95 (117)
T ss_dssp EEEEECTTCCEEEECSH
T ss_pred EEEEECCCCCEEEecCH
Confidence 99999999999887754
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=89.91 E-value=0.95 Score=36.22 Aligned_cols=74 Identities=9% Similarity=0.240 Sum_probs=53.4
Q ss_pred ceeEEEecCc------ccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCC
Q 022632 174 GFVKVNMDGV------PIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEG 247 (294)
Q Consensus 174 ~fVKV~MdG~------pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eG 247 (294)
.-|||+-+.. .=.|.|=+..-=+|++|...+.+-|..+. .. + + .....|-|+|.||
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-------~~--~------i---~~~~klkYkDEdG 67 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-------NN--N------I---SPITKIKYQDEDG 67 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-------SS--C------C---CCCCCEEEECSSS
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-------cc--c------c---cceeEEEEEcCCC
Confidence 6788888742 12366667778889999999999996220 00 0 0 1346899999999
Q ss_pred CeEEccC-CChHHHhhccc
Q 022632 248 DWMLVGD-VPWRMFISSVK 265 (294)
Q Consensus 248 DwMLVGD-vPWemFv~svK 265 (294)
|+...++ .=|+|-+.+++
T Consensus 68 D~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 68 DFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp CEEEECSHHHHHHHHHHHH
T ss_pred CEEEEcCHHHHHHHHHHHH
Confidence 9988876 68999888763
No 6
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=79.89 E-value=2.4 Score=32.23 Aligned_cols=57 Identities=12% Similarity=0.312 Sum_probs=41.3
Q ss_pred cCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEccC-CChHHHhhccc
Q 022632 191 LNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGD-VPWRMFISSVK 265 (294)
Q Consensus 191 L~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVGD-vPWemFv~svK 265 (294)
...-=+|++|...+.+-|..+ .+.+ -.....|-|.|.|||+.-.++ .=|+|=+.++|
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~-----~~~~-------------~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT-----HNNN-------------ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT-----TSSC-------------SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHccc-----cccc-------------ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 445567999999999999632 0001 013568899999999987775 68999888774
No 7
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=79.60 E-value=5.1 Score=31.46 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=42.2
Q ss_pred ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEcc
Q 022632 174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG 253 (294)
Q Consensus 174 ~fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVG 253 (294)
.-+||+-.|...=--|.-..--++++|-..|..+|. + ..++|.|.|.|||-.-|=
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~-----L--------------------~~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-----L--------------------NTIQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT-----C--------------------SSEEEEEECTTSCEEEEC
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcC-----C--------------------CceEEEEEcCCCCEEEEe
Confidence 457899999764444644447789999999999994 2 357999999999988764
No 8
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=78.05 E-value=9.6 Score=29.42 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=54.9
Q ss_pred ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEc-CCCCeEEc
Q 022632 174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYED-KEGDWMLV 252 (294)
Q Consensus 174 ~fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD-~eGDwMLV 252 (294)
.-|||+-. +.-.|....=-+|.+|...|.+=+. +. + .+-+|.|.| .+|.|++.
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~-----l~---~---------------~~~~LsYk~~~s~~~vi~ 59 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLE-----LR---L---------------EHTKLSYRPRDSNELVPL 59 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTT-----CC---G---------------GGCCEEECCTTCSSCEEC
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhC-----CC---c---------------ceeEEEeeCCCCCCeecc
Confidence 46788877 6778888888899999999999885 21 1 123788999 68889999
Q ss_pred cCCChHHHhhccc--eeEE
Q 022632 253 GDVPWRMFISSVK--RLRI 269 (294)
Q Consensus 253 GDvPWemFv~svK--RLrI 269 (294)
+|.=|+.-...|+ ||++
T Consensus 60 ~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 60 SEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp CTTTHHHHHTTCBTTEEEE
T ss_pred ChHHHHHHHHhccCCcEEE
Confidence 9999998888755 6665
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=77.21 E-value=4.5 Score=32.57 Aligned_cols=64 Identities=9% Similarity=0.137 Sum_probs=47.6
Q ss_pred ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEcc
Q 022632 174 GFVKVNMDGVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVG 253 (294)
Q Consensus 174 ~fVKV~MdG~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVG 253 (294)
.-+||+..|...=--|.-..--++++|-..|..+|. + ..++|.|.|.|||-.-|=
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~-----L--------------------~~~~IkY~DEenD~V~i~ 69 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-----L--------------------NTIQIKYLDEENEEVSIN 69 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHC-----C--------------------SSBCCEEECTTSCEECCC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcC-----C--------------------CceEEEEecCCCCEEEEe
Confidence 568999999865445654557789999999999995 2 256999999999998764
Q ss_pred CCChHHHhhcc
Q 022632 254 DVPWRMFISSV 264 (294)
Q Consensus 254 DvPWemFv~sv 264 (294)
-+.+|-+.+
T Consensus 70 --Sq~E~eEAl 78 (101)
T 1wj6_A 70 --SQGEYEEAL 78 (101)
T ss_dssp --SHHHHHHHH
T ss_pred --cHHHHHHHH
Confidence 355555443
No 10
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=76.51 E-value=3.6 Score=33.46 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=33.5
Q ss_pred ecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEccCC
Q 022632 190 DLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLVGDV 255 (294)
Q Consensus 190 DL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLVGDv 255 (294)
||...-.|++|..-..+-|.. .+-.|-|.|.|||+.-+=|.
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~-------------------------~DIaLNYrD~eGDLIrildd 68 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR-------------------------EDIALNYRDAEGDLVRLLSD 68 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC-------------------------SSEEEEEECTTSCEEECCSH
T ss_pred ccccCCCHHHHHHHHHHHhcc-------------------------cceeeeeecCCCCEEEEcch
Confidence 677888999999999999951 24588999999999876554
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=57.99 E-value=2.7 Score=29.50 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=11.3
Q ss_pred EEEEEcCCCCeEE
Q 022632 239 VLTYEDKEGDWML 251 (294)
Q Consensus 239 vltYeD~eGDwML 251 (294)
.++|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5899999999954
No 12
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=41.10 E-value=56 Score=26.22 Aligned_cols=57 Identities=14% Similarity=0.323 Sum_probs=39.6
Q ss_pred ceeEEEec-CcccceeeecCCCCChHHHHHHHHHhhccCCcccccCCCcchhhhhhhhhcCCCCceEEEEEcCCCCeEEc
Q 022632 174 GFVKVNMD-GVPIGRKVDLNAHASYESLAQTLEEMFFASTPAINSIGGEKDLATKAFKLLDGLSEFVLTYEDKEGDWMLV 252 (294)
Q Consensus 174 ~fVKV~Md-G~pigRKVDL~~~~sY~eLs~aLe~MF~~~~~~~~~~~g~~~~~~~~~~L~d~~seyvltYeD~eGDwMLV 252 (294)
.-+.+... |..+--.||-..+=+|.+|..++.+..-.-|. -..-|||.|||++-|
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~------------------------TAFeYEDE~gDRITV 70 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATT------------------------TAFEYEDEDGDRITV 70 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCC------------------------SEEEEECTTSCEEEE
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCcccee------------------------eeeeeccccCCeeEE
Confidence 44555554 55677788877778899999999888742111 145699999999988
Q ss_pred cC
Q 022632 253 GD 254 (294)
Q Consensus 253 GD 254 (294)
--
T Consensus 71 RS 72 (106)
T 2npt_A 71 RS 72 (106)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 13
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=29.79 E-value=10 Score=30.41 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=11.2
Q ss_pred EEEEEcCCCCeEE
Q 022632 239 VLTYEDKEGDWML 251 (294)
Q Consensus 239 vltYeD~eGDwML 251 (294)
.++|+|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 5889999999964
No 14
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=20.18 E-value=15 Score=26.44 Aligned_cols=10 Identities=70% Similarity=1.192 Sum_probs=4.8
Q ss_pred ccccccCCCC
Q 022632 6 GLLGVGGGGG 15 (294)
Q Consensus 6 ~~~~~g~~~~ 15 (294)
-++.||+|||
T Consensus 24 kllegggggg 33 (62)
T 2i7u_A 24 KLLEGGGGGG 33 (62)
T ss_dssp HHHHCSSCSS
T ss_pred HHHhcCCCCc
Confidence 3455653443
Done!