BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022634
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Brucella Melitensis
Length = 209
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 78 IKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFP 137
+K+ + +F+SGGGSN ++ A A ++V + ++K + GG A I +F
Sbjct: 5 MKRNRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFK 64
Query: 138 KTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGG 197
+ + ++AAL + D I LAGY++L+ I Y I+NIHPSLLP F
Sbjct: 65 RKDFASKEAHEDAILAALDVLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSLLPLF-- 122
Query: 198 KGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLE 257
G+ H+ + +G + +G T+H V E D G ILAQ VPVL DTAE LAARVL
Sbjct: 123 ---PGLHTHQRALDAGMKLAGCTVHLVTEGMDEGPILAQAAVPVLDGDTAETLAARVLKA 179
Query: 258 EHRLY 262
EHRLY
Sbjct: 180 EHRLY 184
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Symbiobacterium Toebii
Length = 229
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 106/209 (50%), Gaps = 5/209 (2%)
Query: 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD 141
+ V +SG G+N ++I C G + G V V+++++ D G E AR + +
Sbjct: 24 RIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDPAAY 83
Query: 142 EPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYY 201
L L VD + LAGY++L+ ++ A+P I+NIHPSLLPAF
Sbjct: 84 PSRTAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAF-----P 138
Query: 202 GMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRL 261
G++ + + G + +G T+HFV D G I+ Q VPVL DT EDL R+L EEHR+
Sbjct: 139 GLEAQRQALEHGVKVAGCTVHFVTAGVDEGPIILQAAVPVLEGDTVEDLRRRILAEEHRI 198
Query: 262 YVDVASALCEERVVWREDGVPVIRSKENP 290
Y + E R+V V ++ E P
Sbjct: 199 YPEAIRLFAEGRLVIEGRRVRILDRAEAP 227
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Geobacillus Kaustophilus
Length = 212
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 108/194 (55%), Gaps = 7/194 (3%)
Query: 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTK 140
K LAVF SG G+NF++I A G + V +LV ++P E A ++P +F K
Sbjct: 4 KRLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVF-SPK 62
Query: 141 DEPNGLS-PNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKG 199
D P+ + ++++ L +D+I LAGY +LI L+ AY IVNIHPSLLPAF GK
Sbjct: 63 DYPSKAAFESEILRELKGRQIDWIALAGYXRLIGPTLLSAYEGKIVNIHPSLLPAFPGKD 122
Query: 200 YYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEH 259
G +G +G T+H+VDE DTG ++AQRVVP++ + E L R+ EH
Sbjct: 123 AIGQAYR-----AGVSETGVTVHYVDEGXDTGPVIAQRVVPIVPGEPIEALEERIHQVEH 177
Query: 260 RLYVDVASALCEER 273
LY V L E+
Sbjct: 178 ELYPTVLRXLLGEK 191
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
pdb|3P9X|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
Length = 211
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 104/183 (56%), Gaps = 7/183 (3%)
Query: 81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVI-LFPKT 139
K +A+F SG G+N +I + AG + +V +L+T+KP E + + IPV L PKT
Sbjct: 3 KRVAIFASGSGTNAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPKT 62
Query: 140 KDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKG 199
++V L E +DF++LAGY++L+ L+ AY IVNIHPSLLPAF
Sbjct: 63 YPSKEAYE-IEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFP--- 118
Query: 200 YYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEH 259
G+ + I + + +G TIH+VDE DTG I+AQ V + DT E L ++ EH
Sbjct: 119 --GLHAIEQAIRANVKVTGVTIHYVDEGMDTGPIIAQEAVSIEEEDTLETLTTKIQAVEH 176
Query: 260 RLY 262
RLY
Sbjct: 177 RLY 179
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GRC|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GAR|A Chain A, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1GAR|B Chain B, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1C2T|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C2T|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1JKX|A Chain A, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|B Chain B, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|C Chain C, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|D Chain D, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1CDE|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|C Chain C, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|D Chain D, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 5/198 (2%)
Query: 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD 141
N+ V +SG GSN ++I AC + G V + +NK D G E AR I +
Sbjct: 2 NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61
Query: 142 EPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYY 201
+ +L+ + D ++LAG+++++ + Y ++NIHPSLLP Y
Sbjct: 62 DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPK-----YP 116
Query: 202 GMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRL 261
G+ H+ + +G G ++HFV + D G ++ Q VPV D+ +D+ ARV +EH +
Sbjct: 117 GLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAI 176
Query: 262 YVDVASALCEERVVWRED 279
Y V S + R+ E+
Sbjct: 177 YPLVISWFADGRLKMHEN 194
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C3E|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid
Length = 209
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 5/198 (2%)
Query: 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD 141
N+ V +SG GSN ++I AC + G V + +NK D G E AR I +
Sbjct: 2 NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61
Query: 142 EPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYY 201
+ +L+ + D ++LAG+++++ + Y ++NIHPSLLP Y
Sbjct: 62 DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPK-----YP 116
Query: 202 GMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRL 261
G+ H+ + +G G ++HFV + D G ++ Q VPV D+ +D+ ARV +EH +
Sbjct: 117 GLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAI 176
Query: 262 YVDVASALCEERVVWRED 279
Y V S + R+ E+
Sbjct: 177 YPLVISWFADGRLKMHEN 194
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDD|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 5/198 (2%)
Query: 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD 141
N+ V +SG GSN ++I AC + G V + +NK D G E AR I +
Sbjct: 2 NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61
Query: 142 EPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYY 201
+ +L+ + D ++LAG+++++ + Y ++NIHPSLLP Y
Sbjct: 62 DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPK-----YP 116
Query: 202 GMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRL 261
G+ H+ + +G G ++HFV + D G ++ Q VPV D+ +D+ ARV +EH +
Sbjct: 117 GLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAI 176
Query: 262 YVDVASALCEERVVWRED 279
Y V S + R+ E+
Sbjct: 177 YPLVISWFADGRLKMHEN 194
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex
Aeolicus
Length = 216
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 108/204 (52%), Gaps = 9/204 (4%)
Query: 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD 141
+ V VSG GSN ++I A +G V + +++++ P E + +++ + + K+
Sbjct: 3 KIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQR-KE 61
Query: 142 EPNGLSPNDLVA-ALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGY 200
P+ + A L + V+ ++LAG+ +++ ++ +P ++NIHPSL+PAF
Sbjct: 62 FPSKKEFEERXALELKKKGVELVVLAGFXRILSHNFLKYFPNKVINIHPSLIPAF----- 116
Query: 201 YGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHR 260
G+ K + G ++SG T+H VDE D G ++ Q VVPVL D LA R+L EH+
Sbjct: 117 QGLHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHK 176
Query: 261 LYVDVASALCEERVVWREDGVPVI 284
+ ++R++ DG VI
Sbjct: 177 ILPQTVQWFAQDRIII--DGRKVI 198
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
pdb|3GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
Length = 212
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 5/198 (2%)
Query: 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD 141
N+ V +SG GSN ++I AC + G V + +NK D G E AR I +
Sbjct: 2 NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61
Query: 142 EPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYY 201
+ L+ + D ++LAG+++++ + Y ++NIHPSLLP Y
Sbjct: 62 DSREAYDRALIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPK-----YP 116
Query: 202 GMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRL 261
G+ H+ + +G G ++HFV + D G ++ Q VPV D+ +D+ ARV +EH +
Sbjct: 117 GLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAI 176
Query: 262 YVDVASALCEERVVWRED 279
Y V S + R+ E+
Sbjct: 177 YPLVISWFADGRLKMHEN 194
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|C Chain C, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|D Chain D, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
Length = 215
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 10/202 (4%)
Query: 79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPK 138
K+ + V +SG GSN ++ A + +++N + G A+ IP +
Sbjct: 7 KELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFV--- 63
Query: 139 TKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGK 198
K +P L + L E +VD + LAG++ ++P + + + I+NIHPSLLP+F G
Sbjct: 64 VKRKP--LDIEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKG- 120
Query: 199 GYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEE 258
+ + +G + +G T+H+V + D G I+ Q VPVL DTAE LA+R+L E
Sbjct: 121 ----LNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLREDTAESLASRILAAE 176
Query: 259 HRLYVDVASALCEERVVWREDG 280
H Y + ++++ +DG
Sbjct: 177 HVCYPKGVKLIAQDKIKLCDDG 198
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 108/212 (50%), Gaps = 10/212 (4%)
Query: 83 LAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIP--VILFPKTK 140
+AV +SG GSN +++ + + + ++++NK G + A IP VI K
Sbjct: 14 VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYK 73
Query: 141 DEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGY 200
+ S DLV L E ++D + LAG+++++ ++ + ++NIHPSLLP+F G
Sbjct: 74 NRVEFDSAIDLV--LEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGS-- 129
Query: 201 YGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHR 260
H+ + +G +G T+HFV E D G+I+ Q VPV DT L+ RV L EH+
Sbjct: 130 ---NAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHK 186
Query: 261 LYVDVASALCEERVVWREDGVPVIRSKENPDE 292
++ + V E+G + KE P E
Sbjct: 187 IFPAALQLVASGTVQLGENG-KICWVKEEPLE 217
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Query: 83 LAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIP--VILFPKTK 140
+AV +SG GSN +++ + + + ++++NK G + A IP VI K
Sbjct: 3 VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYK 62
Query: 141 DEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGY 200
+ S DLV L E ++D + LAG+++++ ++ + ++NIHPSLLP+F G
Sbjct: 63 NRVEFDSAIDLV--LEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGS-- 118
Query: 201 YGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHR 260
H+ + +G +G T+HFV E D G+I+ Q VPV DT L+ RV L EH+
Sbjct: 119 ---NAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHK 175
Query: 261 LY 262
++
Sbjct: 176 IF 177
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Query: 83 LAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIP--VILFPKTK 140
+AV +SG GSN +++ + + + ++++NK G + A IP VI K
Sbjct: 3 VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYK 62
Query: 141 DEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGY 200
+ S DLV L E ++D + LAG+++++ ++ + ++NIHPSLLP+F G
Sbjct: 63 NRVEFDSAIDLV--LEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGS-- 118
Query: 201 YGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHR 260
H+ + +G +G T+HFV E D G+I+ Q VPV DT L+ RV L EH+
Sbjct: 119 ---NAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHK 175
Query: 261 LY 262
++
Sbjct: 176 IF 177
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide
Transformylase
Length = 203
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 83 LAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIP--VILFPKTK 140
+AV +SG GSN +++ + + + ++++NK G + A IP VI K
Sbjct: 3 VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYK 62
Query: 141 DEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGY 200
+ S DLV L E ++D + LAG+ +++ ++ + +NIHPSLLP+F G
Sbjct: 63 NRVEFDSAIDLV--LEEFSIDIVCLAGFXRILSGPFVQKWNGKXLNIHPSLLPSFKGS-- 118
Query: 201 YGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHR 260
H+ + +G +G T+HFV E D G+I+ Q VPV DT L+ RV L EH+
Sbjct: 119 ---NAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHK 175
Query: 261 LY 262
++
Sbjct: 176 IF 177
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide
Formyltransferase (Purn) In Complex With Ches From
Coxiella Burnetii
Length = 215
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 11/209 (5%)
Query: 83 LAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDE 142
+ V +SG G+N ++I A G ++ +++N+ D G + A+ IP + P +
Sbjct: 8 IVVLISGNGTNLQAIIGAIQKGLAI-EIRAVISNRADAYGLKRAQQADIPTHIIPHEEFP 66
Query: 143 PNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYG 202
+ L + + I+LAG+ + + + Y +NIHPSLLP Y G
Sbjct: 67 SRTDFESTLQKTIDHYDPKLIVLAGFXRKLGKAFVSHYSGRXINIHPSLLPK-----YTG 121
Query: 203 MKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLY 262
+ H+ +A+G G ++H+V E D G ++ Q + + DT E L RV EH +Y
Sbjct: 122 LNTHERALAAGETEHGVSVHYVTEDLDAGPLICQARLSITPQDTPETLKTRVHALEHIIY 181
Query: 263 VDVASALCEERVVWRE-----DGVPVIRS 286
+V S R+ + DG P+ +S
Sbjct: 182 PEVLSWFAAGRLNYHNNQVFLDGKPLAKS 210
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DA8|B Chain B, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DCJ|A Chain A, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
pdb|3DCJ|B Chain B, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
Length = 215
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD 141
L V SG GS RS+ A + Y VV V +C AE A + S+PV + D
Sbjct: 14 RLVVLASGTGSLLRSLLDAAVGD--YPARVVAVGVDRECRAAEIAAEASVPVFTV-RLAD 70
Query: 142 EPNGLSPN-DLVAALSEVNVDFILLAGYLKLI-PMELIRAYPRSIVNIHPSLLPAFGGKG 199
P+ + + + AA + D ++ AG+++++ P L R Y R++ N HP+LLPAF G
Sbjct: 71 HPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTL-NTHPALLPAF--PG 127
Query: 200 YYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEH 259
+G+ +A G + +G T+H VD DTG ILAQ+ VPVL D E L R+ + E
Sbjct: 128 THGVA---DALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTER 184
Query: 260 R 260
R
Sbjct: 185 R 185
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
pdb|3O1L|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
Length = 302
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 22/148 (14%)
Query: 109 DVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVN-------VD 161
D+ +++N D D IP P + P D A +EV+ D
Sbjct: 134 DIACVISNHQDLRSXVEWHD--IPYYHVP--------VDPKDKEPAFAEVSRLVGHHQAD 183
Query: 162 FILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTI 221
++LA Y +++P +L R Y ++NIH S LP+F G Y H+A + G + G T
Sbjct: 184 VVVLARYXQILPPQLCREYAHQVINIHHSFLPSFVGAKPY----HQASL-RGVKLIGATC 238
Query: 222 HFVDEHYDTGRILAQRVVPVLWNDTAED 249
H+V E D G I+ Q VV V D+ E+
Sbjct: 239 HYVTEELDAGPIIEQDVVRVSHRDSIEN 266
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
Length = 286
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 104 GSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFP-KTKDEPNGLSPNDLVAALSEVNVDF 162
G + DVV +V+N PD A + IP F KD+P ++ + E +
Sbjct: 114 GQLGXDVVAVVSNHPDL--EPLAHWHKIPYYHFALDPKDKPG--QERKVLQVIEETGAEL 169
Query: 163 ILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIH 222
++LA Y +++ EL R +NIH SLLP F G Y +K G + G T H
Sbjct: 170 VILARYXQVLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQAYNK-----GVKXVGATAH 224
Query: 223 FVDEHYDTGRILAQRVVPVLWNDTAEDLAAR 253
+++ D G I+AQ V V + EDL A+
Sbjct: 225 YINNDLDEGPIIAQGVEVVDHSHYPEDLIAK 255
>pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of
10- Formyltetrahydrofolate Dehydrogenase
Length = 310
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 116 NKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPME 175
K D G E +D +PV FP+ + L ++VA + + +L + IPME
Sbjct: 37 GKADPDGLEAEKD-GVPVFKFPRWRARGQALP--EVVAKYQALGAELNVLPFCSQFIPME 93
Query: 176 LIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILA 235
+I A + HPSLLP + G + G + G TI + D+ DTG +L
Sbjct: 94 VINAPRHGSIIYHPSLLPR-----HRGASAINWTLIHGDKKGGFTIFWADDGLDTGDLLL 148
Query: 236 QRVVPVLWNDTAEDLAARVLLEE 258
Q+ VL +DT L R L E
Sbjct: 149 QKECEVLPDDTVSTLYNRFLFPE 171
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt)
From Coxiella Burnetii
Length = 314
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 124 EYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRS 183
E AR N IP+I +DE + L+A N D ++ Y ++P + + A+
Sbjct: 52 EIARQNEIPIIQPFSLRDE---VEQEKLIAX----NADVXVVVAYGLILPKKALNAFRLG 104
Query: 184 IVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLW 243
VN+H SLLP + G + +A++A G R +G +I +E DTG +LA+ +
Sbjct: 105 CVNVHASLLPRWRG----AAPIQRAILA-GDRETGISIXQXNEGLDTGDVLAKSACVISS 159
Query: 244 NDTAEDLAARVLL 256
DTA DL R+ L
Sbjct: 160 EDTAADLHDRLSL 172
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
Length = 287
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 155 LSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGA 214
+++ D I+LA Y +++ +L +NIH S LP F G Y H+A G
Sbjct: 161 VTQSQADLIVLARYXQILSDDLSAFLSGRCINIHHSFLPGFKGAKPY----HQAH-TRGV 215
Query: 215 RYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERV 274
+ G T HFV D G I+AQ V V D+AEDL + E R+ E+R+
Sbjct: 216 KLIGATAHFVTADLDEGPIIAQDVEHVSHRDSAEDLVRKGRDIERRVLSRAVLLFLEDRL 275
Query: 275 V 275
+
Sbjct: 276 I 276
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10-
Formyltetrahydrofolate 2 Dehydrogenase
pdb|2CFI|A Chain A, The Hydrolase Domain Of Human 10-Fthfd In Complex With 6-
Formyltetrahydropterin
Length = 329
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 23/181 (12%)
Query: 94 FRSIHAACLAGSVYGDVV-----------VLVTNKPDCGGAE-----YARDNSIPVILFP 137
F+S+ A + S++G V V V PD G A + +PV +
Sbjct: 20 FQSMKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYS 79
Query: 138 KTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGG 197
+ + + L D+VA + + +L + IPME+I A + HPSLLP
Sbjct: 80 RWRAKGQALP--DVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPR--- 134
Query: 198 KGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLE 257
+ G + G + G +I + D+ DTG +L Q+ VL +DT L R L
Sbjct: 135 --HRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFP 192
Query: 258 E 258
E
Sbjct: 193 E 193
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
Length = 288
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 19/185 (10%)
Query: 101 CLAGSVY----GDV----VVLVTNKP--DCGGAEYARDNSIPVILFPKTKDEPNGLSPND 150
CLA +Y GD+ +V+N P G ++ IP FP KD
Sbjct: 102 CLADILYRWRVGDLHXIPTAIVSNHPRETFSGFDFG---DIPFYHFPVNKDTRRQQEAA- 157
Query: 151 LVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVI 210
+ A +++ + D ++LA Y +++ E +NIH S LP F G Y H+A
Sbjct: 158 ITALIAQTHTDLVVLARYXQILSDEXSARLAGRCINIHHSFLPGFKGAKPY----HQA-F 212
Query: 211 ASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALC 270
G + G T H+V D G I+ Q V + DT DL + E R+
Sbjct: 213 DRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHL 272
Query: 271 EERVV 275
++RV+
Sbjct: 273 DDRVI 277
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|B Chain B, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|C Chain C, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|D Chain D, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
Length = 292
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 104 GSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFI 163
G + D+V +V+N PD A A + +P FP T D + + +
Sbjct: 119 GELKXDIVGIVSNHPDF--APLAAQHGLPFRHFPITADT-KAQQEAQWLDVFETSGAELV 175
Query: 164 LLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHF 223
+LA Y +++ E +NIH S LP F G Y H+A A G + G T HF
Sbjct: 176 ILARYXQVLSPEASARLANRAINIHHSFLPGFKGAKPY----HQA-HARGVKLIGATAHF 230
Query: 224 VDEHYDTGRILAQRV 238
V + D G I+ Q V
Sbjct: 231 VTDDLDEGPIIEQVV 245
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|B Chain B, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|C Chain C, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|D Chain D, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
Length = 317
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 126 ARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIV 185
A + IPV+ +P + D + + D I+ A + +++P E++ A +
Sbjct: 56 AEKHGIPVL-------QPLRIREKDEYEKVLALEPDLIVTAAFGQIVPNEILEAPKYGCI 108
Query: 186 NIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWND 245
N+H SLLP G G +H A I G +G TI + E D G IL Q V + +
Sbjct: 109 NVHASLLPELRG----GAPIHYA-IXEGKEKTGITIXYXVEKLDAGDILTQVEVEIEERE 163
Query: 246 TAEDL 250
T L
Sbjct: 164 TTGSL 168
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|1FMT|B Chain B, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
pdb|2FMT|B Chain B, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
Length = 314
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 86 FVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD---- 141
+ G +F + H L S G VV V +PD + PV + + K
Sbjct: 6 IIFAGTPDFAARHLDALLSS--GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVF 63
Query: 142 EPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYY 201
+P L P + ++E+ D +++ Y ++P ++ +N+H SLLP + G
Sbjct: 64 QPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAA-- 121
Query: 202 GMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDL 250
+ +++ A A +G TI +D DTG +L + P+ DT+ L
Sbjct: 122 --PIQRSLWAGDAE-TGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTL 167
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 123 AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPR 182
A A + IPV P+ ++ V +++++ D I Y LI E+++ P
Sbjct: 46 ARLAAERGIPVY-------APDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPA 98
Query: 183 SIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVL 242
N+H SLLP + G+ V+ +G +G T+H + + D G I+AQ + +
Sbjct: 99 GAFNLHGSLLPKYRGRAPLNW-----VLVNGETETGVTLHRMVKRADAGAIVAQLRIAIA 153
Query: 243 WNDTAEDL------AARVLLEE 258
+D A L AAR LLE+
Sbjct: 154 PDDIAITLHHKLCHAARQLLEQ 175
>pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
pdb|2BLN|B Chain B, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
Length = 305
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 123 AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPR 182
A A + IPV P+ ++ V +++++ D I Y LI E+++ P
Sbjct: 46 ARLAAERGIPVY-------APDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPA 98
Query: 183 SIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVL 242
N+H SLLP + G+ V+ +G +G T+H + + D G I+AQ + +
Sbjct: 99 GAFNLHGSLLPKYRGRAPLNW-----VLVNGETETGVTLHRMVKRADAGAIVAQLRIAIA 153
Query: 243 WNDTAEDL------AARVLLEE 258
+D A L AAR LLE+
Sbjct: 154 PDDIAITLHHKLCHAARQLLEQ 175
>pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain
Length = 302
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 123 AEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPR 182
A A + IPV P+ ++ V +++++ D I Y LI E+++ P
Sbjct: 46 ARLAAERGIPVY-------APDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPA 98
Query: 183 SIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVL 242
N+H SLLP + G+ V+ +G +G T+H + + D G I+AQ + +
Sbjct: 99 GAFNLHGSLLPKYRGRAPLNW-----VLVNGETETGVTLHRMVKRADAGAIVAQLRIAIA 153
Query: 243 WNDTAEDL------AARVLLEE 258
+D A L AAR LLE+
Sbjct: 154 PDDIAITLHHKLCHAARQLLEQ 175
>pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From
Yersinia Pestis Complexed With L-Methionine
Length = 318
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 86 FVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD---- 141
+ G +F + H L S + +V V +PD + PV + +
Sbjct: 10 IIFAGTPDFAARHLGALLSSQHK--IVGVFTQPDRPAGRGNKLTPSPVKILAEHHGIPVF 67
Query: 142 EPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPR-SIVNIHPSLLPAFGGKGY 200
+P L P + ++++N D +++ Y ++P ++ A PR +N+H SLLP + G
Sbjct: 68 QPKSLRPEENQHLVADLNADIMVVVAYGLILPAAVL-AMPRLGCINVHGSLLPRWRGAA- 125
Query: 201 YGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDL 250
+ ++V A G +G TI +D DTG +L + + DT+ L
Sbjct: 126 ---PIQRSVWA-GDEKTGITIMQMDIGLDTGAMLHKIECAIQPEDTSATL 171
>pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae
Length = 318
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 11/166 (6%)
Query: 86 FVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD---- 141
V G +F + H A L S + ++ V +P+ + + PV +
Sbjct: 10 IVFAGTPDFAARHLAALLSSEHE--IIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVY 67
Query: 142 EPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYY 201
+P ++ L+ +N D ++ Y L+P ++ +N+H S+LP + G
Sbjct: 68 QPENFKSDESKQQLAALNADLXVVVAYGLLLPKVVLDTPKLGCINVHGSILPRWRG---- 123
Query: 202 GMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTA 247
+ +++ A G +G TI D DTG L +P+ +DT+
Sbjct: 124 AAPIQRSIWA-GDSETGVTIXQXDVGLDTGDXLKIATLPIEASDTS 168
>pdb|2CN1|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii (
Nt5c3)(Casp Target)
pdb|2VKQ|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii (
Cn-Iii, Nt5c3) In Complex With Beryllium Trifluoride
Length = 292
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 41/190 (21%)
Query: 22 PSLSFAQSHSHLSASF-RAHKLLVPQSLRSSRRLECVNFAEKVKNNGDKYEKDFDSGIKK 80
P L+ + + ++ + ++H LLV Q+L ++ E V ++ + G YE FD +++
Sbjct: 94 PVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEG--YENFFDK-LQQ 150
Query: 81 KNLAVFVSGGG----------------------SNFRSIHAACLAGSVYGDVVVLVTNKP 118
++ VF+ G SNF + G+++ V NK
Sbjct: 151 HSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELI-HVFNKH 209
Query: 119 DCG--GAEY---ARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIP 173
D EY +DNS ++L G S DL A NV+ IL GYL
Sbjct: 210 DGALRNTEYFNQLKDNSNIILL---------GDSQGDLRMADGVANVEHILKIGYLNDRV 260
Query: 174 MELIRAYPRS 183
EL+ Y S
Sbjct: 261 DELLEKYMDS 270
>pdb|2JGA|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii
In Complex With Phosphate And Magnesium
Length = 292
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 41/190 (21%)
Query: 22 PSLSFAQSHSHLSASF-RAHKLLVPQSLRSSRRLECVNFAEKVKNNGDKYEKDFDSGIKK 80
P L+ + + ++ + ++H LLV Q+L ++ E V ++ + G YE FD +++
Sbjct: 94 PVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEG--YENFFDK-LQQ 150
Query: 81 KNLAVFVSGGG----------------------SNFRSIHAACLAGSVYGDVVVLVTNKP 118
++ VF+ G SNF + G+++ V NK
Sbjct: 151 HSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELI-HVFNKH 209
Query: 119 DCG--GAEY---ARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIP 173
D EY +DNS ++L G S DL A NV+ IL GYL
Sbjct: 210 DGALRNTEYFNQLKDNSNIILL---------GDSQGDLRMADGVANVEHILKIGYLNDRV 260
Query: 174 MELIRAYPRS 183
EL+ Y S
Sbjct: 261 DELLEKYMDS 270
>pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
Length = 249
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 76 SGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVIL 135
+GI +LA+ + G R + AAC AG + G++V+ + + D G + +PV +
Sbjct: 139 AGITAASLAL--ADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG-----EADVPVAI 191
Query: 136 FPKTKD 141
P D
Sbjct: 192 MPLKND 197
>pdb|1U8X|X Chain X, Crystal Structure Of Glva From Bacillus Subtilis, A
Metal-requiring, Nad-dependent
6-phospho-alpha-glucosidase
Length = 472
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 74 FDSGIKKKNLAVFVSGGGSNF 94
F S KKK+ ++ ++GGGS F
Sbjct: 20 FQSNXKKKSFSIVIAGGGSTF 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,460,805
Number of Sequences: 62578
Number of extensions: 402861
Number of successful extensions: 1037
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 35
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)