BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022635
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 132/278 (47%), Gaps = 24/278 (8%)
Query: 5 IDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG--LRL 62
++ PG+LR G R + LWI+F + I L L V+ +KTIDGRG + L G L +
Sbjct: 51 VNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFM 110
Query: 63 KECEHVIICNLEFEGGR-------------------GHDVDGIQIKPNSRHIWIDRCSLR 103
++ HVI+ +L G D D I ++ N + WID SL
Sbjct: 111 RKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLS 169
Query: 104 DYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFD-GTRQR 162
D DGLID+T ST IT+S +F H K ML+G D ++ D+ ++VT+ F QR
Sbjct: 170 DCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQR 229
Query: 163 HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLE 222
PR R+G VH+ NN W IYA+ S I S+ N + A + E +
Sbjct: 230 MPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPS 289
Query: 223 AKSGLI-RSEGDIFLKGAQAQLLTGVGEECVFHPSEYY 259
A + + RS D F+ GA E +++ +E +
Sbjct: 290 ACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNEAF 327
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
Pectate Lyase From Thermotoga Maritima
Length = 340
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 105/201 (52%), Gaps = 27/201 (13%)
Query: 25 VFEVSGTIHLSSY--LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEG----- 77
V V GTI + V S KTI G K+ G GL +K+ ++VII N+ FEG
Sbjct: 49 VIVVDGTIVFEPKREIKVLSDKTIVGINDA-KIVGGGLVIKDAQNVIIRNIHFEGFYMED 107
Query: 78 ---GRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTML 134
G+ +D D I ++ NS HIWID + + +DG +DI + S ITVS F HDK L
Sbjct: 108 DPRGKKYDFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSL 166
Query: 135 IGA----DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY----------TRN 180
+G+ DP G + +VT HH F QR PR+RFG H++NN+
Sbjct: 167 VGSSDKEDPEQAG-QAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNV 225
Query: 181 WGIYAVCASVESQIYSQCNIY 201
+ IY V +++ ++++ + N +
Sbjct: 226 FPIYGVASAMGAKVHVEGNYF 246
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 96/202 (47%), Gaps = 41/202 (20%)
Query: 40 VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGHDV 83
V S +I G G+ K+ G G +K ++VII N+EFE G +
Sbjct: 130 VGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEY 189
Query: 84 DGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQSTDITVSRCYF 126
D I I+ S HIWID + D D DG +DI S IT+S F
Sbjct: 190 DSISIE-GSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNVF 248
Query: 127 TQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI-- 183
T HDK LIGA S + D +RVT+HH + QR PR+RFG+VH+YNNY +
Sbjct: 249 TNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLAD 308
Query: 184 ----YAVCASVESQIYSQCNIY 201
YA V SQIY+Q N +
Sbjct: 309 YDFQYAWGVGVFSQIYAQNNYF 330
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 19/180 (10%)
Query: 45 TIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSL-- 102
+I G G + G G+RL ++II N+ R + I++ +S+++WID
Sbjct: 82 SIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYS 141
Query: 103 -------RDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCI---RVTIH 152
DY DGL+D+ R + ITVS F H KTML+G H + + ++T H
Sbjct: 142 EFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVG----HTDNASLAPDKITYH 197
Query: 153 HCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYE---AGQKKRT 209
H F+ R P +R+ VH++NNY ++ A+ + V ++++ + N ++ +GQ T
Sbjct: 198 HNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYFDNVGSGQADPT 257
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 53/209 (25%)
Query: 38 LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 81
+ + + TI G G K+ G ++K ++VII N+EF+ G
Sbjct: 144 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNS 202
Query: 82 DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 124
D I I + HIWID C+ D + DG D + + IT+S
Sbjct: 203 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 261
Query: 125 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 177
Y+ HDK+ + G+ S D +++T+HH + QR PR+RFG+VH+YNNY
Sbjct: 262 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTS 321
Query: 178 ------TRNWGIYAVCASVESQIYSQCNI 200
+ WGI S+IY+Q N+
Sbjct: 322 SSSYPFSYAWGI-----GKSSKIYAQNNV 345
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 53/209 (25%)
Query: 38 LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 81
+ + + TI G G K+ G ++K ++VII N+EF+ G
Sbjct: 144 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNS 202
Query: 82 DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 124
D I I + HIWID C+ D + DG D + + IT+S
Sbjct: 203 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 261
Query: 125 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 177
Y+ HDK+ + G+ S D +++T+HH + Q+ PR+RFG+VH+YNNY
Sbjct: 262 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQKAPRVRFGQVHVYNNYYEGSTS 321
Query: 178 ------TRNWGIYAVCASVESQIYSQCNI 200
+ WGI S+IY+Q N+
Sbjct: 322 SSSYPFSYAWGI-----GKSSKIYAQNNV 345
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 53/209 (25%)
Query: 38 LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 81
+ + + TI G G K+ G ++K ++VII N+EF+ G
Sbjct: 123 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTAGSSGNWAS 181
Query: 82 DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 124
D I I + HIWID C+ D + DG D + + IT+S
Sbjct: 182 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 240
Query: 125 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 177
Y+ HD + + G+ S D +++T+HH + QR PR+RFG+VH+YNNY
Sbjct: 241 YYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTS 300
Query: 178 ------TRNWGIYAVCASVESQIYSQCNI 200
+ WGI S+IY+Q N+
Sbjct: 301 SSSYPFSYAWGI-----GKSSKIYAQNNV 324
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 53/209 (25%)
Query: 38 LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 81
+ + + TI G G K+ G ++K ++VII N+EF+ G
Sbjct: 123 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNS 181
Query: 82 DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 124
D I I + HIWID C+ D + DG D + + IT+S
Sbjct: 182 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 240
Query: 125 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 177
Y+ HDK+ + G+ S D +++T+HH + Q PR+RFG+VH+YNNY
Sbjct: 241 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTS 300
Query: 178 ------TRNWGIYAVCASVESQIYSQCNI 200
+ WGI S+IY+Q N+
Sbjct: 301 SSSYPFSYAWGI-----GKSSKIYAQNNV 324
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 30/171 (17%)
Query: 36 SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNL----------EFEGGRGHDVD- 84
S +S+ S TI G G K T L +K ++VI+ NL +E G G + +
Sbjct: 74 SQISIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEW 133
Query: 85 GIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQSTDITVSRCYFT 127
+ NS ++W+D ++ D DG +DI + S +T+S F
Sbjct: 134 DAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFE 193
Query: 128 QHDKTMLIGADPSHVGDRC--IRVTIHHCLFDGTRQRHPRLRFGKVHLYNN 176
HDKT+LIG S+ +RVT H+ +FD +R PR+RFG +H YNN
Sbjct: 194 LHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNN 244
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 48/200 (24%)
Query: 25 VFEVSGTIHLS--------------SYLSVSSYKTIDGRGQRIKLTGKGLRLKECE---H 67
+ ++ GTI +S S +++ + T+ G G K L + + +
Sbjct: 56 IIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNN 115
Query: 68 VIICNL----------EFEGGRGHDV--DGIQIKPNSRHIWIDRCSLRDYD--------- 106
VII N+ +E G G + D + I + H+WID ++ D +
Sbjct: 116 VIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTK 175
Query: 107 --------DGLIDITRQSTDITVSRCYFTQHDKTMLIG-ADPSHVGDRC-IRVTIHHCLF 156
DG +DI R S +T+S QHDKTMLIG D + D+ + VT+ + +F
Sbjct: 176 DGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVF 235
Query: 157 DGTRQRHPRLRFGKVHLYNN 176
+ +R PR+R+G +H +NN
Sbjct: 236 NRVTERAPRVRYGSIHSFNN 255
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 48/200 (24%)
Query: 25 VFEVSGTIHLS--------------SYLSVSSYKTIDGRGQRIKLTGKGLRLKECE---H 67
+ ++ GTI +S S +++ + T+ G G K L + + +
Sbjct: 56 IIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNN 115
Query: 68 VIICNL----------EFEGGRGHDV--DGIQIKPNSRHIWIDRCSLRDYD--------- 106
VII N+ +E G G + D + I + H+WID ++ D +
Sbjct: 116 VIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTK 175
Query: 107 --------DGLIDITRQSTDITVSRCYFTQHDKTMLIG-ADPSHVGDRC-IRVTIHHCLF 156
DG +DI R S +T+S QHDKTMLIG +D + D+ + VT+ + +F
Sbjct: 176 DGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVF 235
Query: 157 DGTRQRHPRLRFGKVHLYNN 176
+ +R PR+R+G +H +NN
Sbjct: 236 NRVTERAPRVRYGSIHSFNN 255
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 49 RGQRIKLTGKGLRLKECEH-VIICNLE---FEGGRGHDVDGIQIKPNSR----HIWID-- 98
+G G+R+ H VII N+ +GG D D I ++ NS IW+D
Sbjct: 77 KGANGSAANFGIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHN 134
Query: 99 -------RCS-LRDYD-DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRV 149
+CS D DG ID+ + +TVS Y + K L G S + R
Sbjct: 135 TVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAART 194
Query: 150 TIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN 180
T HH F+ R P RFG H+YNNY N
Sbjct: 195 TYHHNRFENVESRVPLQRFGLSHIYNNYFNN 225
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 49 RGQRIKLTGKGLRLKECEH-VIICNLE---FEGGRGHDVDGIQIKPNSR----HIWID-- 98
+G G+R+ H VII N+ +GG D D I ++ NS IW+D
Sbjct: 77 KGANGSAANFGIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHN 134
Query: 99 -------RCS-LRDYD-DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRV 149
+CS D DG ID+ + +TVS Y + K L G S + R
Sbjct: 135 TVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAART 194
Query: 150 TIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN 180
T HH F+ R P RFG H+YNNY N
Sbjct: 195 TYHHNRFENVESRVPLQRFGLSHIYNNYFNN 225
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 59 GLRLKECEH-VIICNLE---FEGGRGHDVDGIQIKPNSR----HIWID---------RCS 101
G+R+ H VII N+ +GG D D I ++ NS IW+D +CS
Sbjct: 87 GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 102 -LRDYD-DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT 159
D DG ID+ + +TVS Y + K L G S + R T HH F+
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 160 RQRHPRLRFGKVHLYNNYTRN 180
R P R G H+YNNY N
Sbjct: 205 ESRVPLQRRGLSHIYNNYFNN 225
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 19/137 (13%)
Query: 59 GLRLKECEHVIICNLE--FEGGRGHDVDGIQIKPNSRHIWIDRCSL----------RDYD 106
G+ +K+ V++ N+ + G D D I++ +S ++W+D L D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 107 ---DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH 163
+ +DI S +TVS Y K +G D S D +T HH ++ R
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNARL 219
Query: 164 PRLRFGKVHLYNNYTRN 180
P R G VH YNN N
Sbjct: 220 PLQRGGLVHAYNNLYTN 236
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 19/137 (13%)
Query: 59 GLRLKECEHVIICNLE--FEGGRGHDVDGIQIKPNSRHIWIDRCSL----------RDYD 106
G+ +K+ V++ N+ + G D D I++ +S ++W+D L D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 107 ---DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH 163
+ +DI S +TVS Y K +G D S D +T HH ++ +
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNAKL 219
Query: 164 PRLRFGKVHLYNNYTRN 180
P R G VH YNN N
Sbjct: 220 PLQRGGLVHAYNNLYTN 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,650,110
Number of Sequences: 62578
Number of extensions: 407432
Number of successful extensions: 897
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 19
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)