Query 022635
Match_columns 294
No_of_seqs 183 out of 988
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 6.2E-58 1.3E-62 416.3 26.1 262 10-283 63-343 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 2.7E-53 5.8E-58 375.7 15.0 177 24-201 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 1.9E-49 4.2E-54 348.4 20.5 168 36-204 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 99.3 2.6E-10 5.6E-15 107.7 20.5 176 12-204 1-203 (314)
5 PF14592 Chondroitinas_B: Chon 99.0 8.2E-09 1.8E-13 100.2 16.0 190 9-203 4-256 (425)
6 TIGR03805 beta_helix_1 paralle 98.7 8.4E-07 1.8E-11 83.9 18.0 142 58-209 78-247 (314)
7 TIGR03808 RR_plus_rpt_1 twin-a 98.5 1.3E-05 2.8E-10 78.5 19.5 112 10-127 55-176 (455)
8 PLN02218 polygalacturonase ADP 98.5 6.7E-06 1.5E-10 80.9 16.1 100 64-167 222-323 (431)
9 PLN03003 Probable polygalactur 98.4 1.1E-05 2.5E-10 79.6 17.2 104 60-167 164-269 (456)
10 PLN02155 polygalacturonase 98.4 8.6E-06 1.9E-10 79.3 15.3 99 64-166 175-275 (394)
11 PF13229 Beta_helix: Right han 98.4 8.9E-06 1.9E-10 67.0 13.0 133 59-205 2-138 (158)
12 PLN02793 Probable polygalactur 98.4 1.4E-05 3.1E-10 79.0 16.3 101 63-167 206-308 (443)
13 PLN02188 polygalacturonase/gly 98.3 1.9E-05 4.1E-10 77.2 16.1 99 64-166 185-285 (404)
14 PF12708 Pectate_lyase_3: Pect 98.3 7.7E-05 1.7E-09 65.4 18.3 101 11-112 20-140 (225)
15 PLN02218 polygalacturonase ADP 98.3 0.00014 3.1E-09 71.6 20.6 134 60-207 195-348 (431)
16 PLN03010 polygalacturonase 98.1 0.001 2.2E-08 65.3 22.7 119 42-167 139-288 (409)
17 PF00295 Glyco_hydro_28: Glyco 98.1 3E-05 6.6E-10 73.6 11.4 104 60-167 118-223 (326)
18 PLN03010 polygalacturonase 98.1 0.00039 8.5E-09 68.1 18.6 110 24-138 107-237 (409)
19 PLN02793 Probable polygalactur 98.0 0.0022 4.8E-08 63.5 22.5 134 60-207 180-333 (443)
20 PF07602 DUF1565: Protein of u 97.9 0.001 2.3E-08 60.8 17.8 128 5-134 4-168 (246)
21 PF13229 Beta_helix: Right han 97.9 0.00025 5.5E-09 58.2 12.3 128 59-201 25-158 (158)
22 PLN02480 Probable pectinestera 97.9 0.003 6.5E-08 60.6 20.6 103 6-111 54-183 (343)
23 PF05048 NosD: Periplasmic cop 97.8 0.0012 2.5E-08 59.4 16.0 67 61-134 39-105 (236)
24 PLN03003 Probable polygalactur 97.8 0.00053 1.1E-08 67.9 14.7 124 42-181 113-262 (456)
25 PF05048 NosD: Periplasmic cop 97.8 0.00082 1.8E-08 60.4 14.4 129 58-203 14-143 (236)
26 PF01696 Adeno_E1B_55K: Adenov 97.7 0.0032 7E-08 60.9 18.3 174 11-205 56-241 (386)
27 PF00295 Glyco_hydro_28: Glyco 97.6 0.00092 2E-08 63.5 12.9 130 60-205 95-246 (326)
28 PLN02155 polygalacturonase 97.6 0.0033 7.3E-08 61.4 16.5 109 60-181 148-269 (394)
29 PLN02432 putative pectinestera 97.6 0.0044 9.5E-08 58.2 16.0 113 9-127 23-152 (293)
30 PLN02170 probable pectinestera 97.5 0.013 2.7E-07 59.2 19.8 102 6-110 231-358 (529)
31 PLN02188 polygalacturonase/gly 97.5 0.0073 1.6E-07 59.2 17.5 134 60-207 158-313 (404)
32 PLN02176 putative pectinestera 97.4 0.009 1.9E-07 57.2 16.3 117 5-127 44-187 (340)
33 TIGR03808 RR_plus_rpt_1 twin-a 97.4 0.0031 6.7E-08 62.1 13.0 94 42-136 115-267 (455)
34 PLN03043 Probable pectinestera 97.3 0.026 5.5E-07 57.4 19.5 119 7-128 230-393 (538)
35 PLN02416 probable pectinestera 97.3 0.0044 9.5E-08 62.8 13.7 100 6-110 236-362 (541)
36 PLN02665 pectinesterase family 97.3 0.036 7.8E-07 53.6 19.2 100 7-111 75-205 (366)
37 PLN02682 pectinesterase family 97.3 0.012 2.7E-07 56.8 15.9 111 11-127 84-227 (369)
38 COG3420 NosD Nitrous oxidase a 97.3 0.028 6.1E-07 53.5 17.3 93 29-127 40-139 (408)
39 PLN02217 probable pectinestera 97.2 0.038 8.3E-07 57.3 19.8 148 6-159 256-452 (670)
40 PLN02995 Probable pectinestera 97.2 0.026 5.6E-07 57.3 18.1 102 6-110 229-357 (539)
41 PLN02773 pectinesterase 97.2 0.019 4.1E-07 54.6 15.9 112 10-127 18-161 (317)
42 PLN02488 probable pectinestera 97.2 0.022 4.9E-07 57.1 17.1 101 7-110 204-329 (509)
43 PLN02304 probable pectinestera 97.2 0.024 5.3E-07 55.0 16.7 115 7-127 82-226 (379)
44 smart00656 Amb_all Amb_all dom 97.1 0.021 4.5E-07 50.3 14.6 131 42-181 45-189 (190)
45 PLN02497 probable pectinestera 97.1 0.023 5.1E-07 54.2 15.7 117 5-127 37-181 (331)
46 PLN02713 Probable pectinestera 97.1 0.048 1E-06 55.7 18.9 121 5-128 255-420 (566)
47 PLN02990 Probable pectinestera 97.1 0.034 7.3E-07 56.9 17.1 102 6-110 265-392 (572)
48 PLN02301 pectinesterase/pectin 97.0 0.0097 2.1E-07 60.4 13.0 102 6-110 242-368 (548)
49 PLN02708 Probable pectinestera 97.0 0.01 2.2E-07 60.4 12.8 100 7-109 248-374 (553)
50 PLN02201 probable pectinestera 97.0 0.014 3E-07 58.9 13.7 103 6-111 212-339 (520)
51 PLN02197 pectinesterase 97.0 0.02 4.2E-07 58.7 14.3 101 6-111 281-410 (588)
52 COG5434 PGU1 Endopygalactoruna 96.9 0.013 2.8E-07 59.3 12.8 101 60-166 264-375 (542)
53 PLN02314 pectinesterase 96.9 0.013 2.7E-07 60.1 12.8 102 6-110 284-410 (586)
54 PF01095 Pectinesterase: Pecti 96.9 0.027 5.8E-07 53.1 13.9 120 10-138 13-156 (298)
55 PLN02933 Probable pectinestera 96.9 0.019 4.2E-07 58.0 13.5 102 6-110 224-350 (530)
56 PLN02634 probable pectinestera 96.8 0.071 1.5E-06 51.5 16.4 114 6-127 62-213 (359)
57 PLN02745 Putative pectinestera 96.8 0.049 1.1E-06 56.0 16.0 99 7-110 292-417 (596)
58 PLN02313 Pectinesterase/pectin 96.8 0.02 4.4E-07 58.7 13.2 118 6-128 281-442 (587)
59 PLN02506 putative pectinestera 96.8 0.018 4E-07 58.3 12.7 96 10-110 245-364 (537)
60 PLN02468 putative pectinestera 96.8 0.019 4.2E-07 58.5 12.9 101 7-110 265-390 (565)
61 PLN02916 pectinesterase family 96.8 0.056 1.2E-06 54.3 15.8 96 10-110 200-322 (502)
62 PLN02484 probable pectinestera 96.6 0.029 6.4E-07 57.5 12.9 98 10-110 285-405 (587)
63 PRK10531 acyl-CoA thioesterase 96.6 0.11 2.3E-06 51.2 16.0 98 11-111 96-256 (422)
64 PLN02671 pectinesterase 96.6 0.14 3E-06 49.5 16.4 109 11-127 73-217 (359)
65 PF12708 Pectate_lyase_3: Pect 96.3 0.022 4.7E-07 49.8 8.5 102 43-160 98-221 (225)
66 PF00544 Pec_lyase_C: Pectate 96.1 0.079 1.7E-06 47.0 10.9 127 43-178 52-200 (200)
67 COG3866 PelB Pectate lyase [Ca 95.9 0.18 4E-06 47.4 12.8 147 83-240 116-278 (345)
68 PF08480 Disaggr_assoc: Disagg 95.0 0.2 4.3E-06 44.0 9.2 65 117-182 2-77 (198)
69 PF14592 Chondroitinas_B: Chon 94.8 0.12 2.5E-06 51.0 8.1 103 93-205 199-323 (425)
70 COG5434 PGU1 Endopygalactoruna 94.0 0.26 5.6E-06 50.1 8.8 133 19-160 236-399 (542)
71 COG4677 PemB Pectin methyleste 91.9 3.4 7.4E-05 39.5 12.2 146 10-167 95-294 (405)
72 COG3420 NosD Nitrous oxidase a 86.6 5.8 0.00013 38.2 9.6 71 59-132 122-196 (408)
73 PF12541 DUF3737: Protein of u 85.1 6.4 0.00014 36.5 8.9 64 64-139 17-80 (277)
74 PF12541 DUF3737: Protein of u 84.1 8 0.00017 35.9 9.1 98 61-180 113-224 (277)
75 TIGR03804 para_beta_helix para 81.5 3.3 7.1E-05 27.1 4.2 41 85-128 1-41 (44)
76 PLN02698 Probable pectinestera 77.0 15 0.00032 37.3 9.0 50 58-110 263-315 (497)
77 PF08480 Disaggr_assoc: Disagg 68.7 31 0.00068 30.5 7.9 73 91-163 32-113 (198)
78 PF03211 Pectate_lyase: Pectat 66.9 97 0.0021 28.0 11.0 99 28-136 12-126 (215)
79 PF03718 Glyco_hydro_49: Glyco 58.9 52 0.0011 33.7 8.5 82 67-154 357-441 (582)
80 PF07602 DUF1565: Protein of u 54.7 75 0.0016 29.2 8.2 72 57-133 114-192 (246)
81 PF01696 Adeno_E1B_55K: Adenov 53.0 64 0.0014 31.7 7.8 79 115-203 119-199 (386)
82 TIGR03804 para_beta_helix para 44.9 54 0.0012 21.1 4.3 41 59-104 1-41 (44)
83 PF03211 Pectate_lyase: Pectat 43.8 1.5E+02 0.0032 26.8 8.2 68 59-135 77-145 (215)
84 KOG1777 Putative Zn-finger pro 40.0 3.1E+02 0.0067 27.7 10.3 144 12-176 39-244 (625)
85 PF06355 Aegerolysin: Aegeroly 33.1 2.5E+02 0.0054 23.2 7.4 58 65-123 14-87 (131)
86 smart00710 PbH1 Parallel beta- 30.6 68 0.0015 17.1 2.7 14 94-107 3-16 (26)
87 PRK03174 sspH acid-soluble spo 26.1 57 0.0012 23.4 2.1 19 84-102 14-32 (59)
88 PRK01625 sspH acid-soluble spo 23.2 70 0.0015 22.9 2.1 19 84-102 14-32 (59)
89 PF08400 phage_tail_N: Prophag 23.2 2.9E+02 0.0063 23.0 6.1 71 50-120 12-85 (134)
90 smart00722 CASH Domain present 23.0 3.6E+02 0.0078 20.9 7.8 80 42-127 18-112 (146)
91 TIGR02861 SASP_H small acid-so 22.0 75 0.0016 22.6 2.1 18 84-101 14-31 (58)
92 PHA03051 Hypothetical protein; 21.4 38 0.00083 25.2 0.5 14 154-167 27-40 (88)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-58 Score=416.32 Aligned_cols=262 Identities=32% Similarity=0.549 Sum_probs=218.0
Q ss_pred chHHHHhhcCCCeEEEEEeceEEEeC------ceeEeccCeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCCCCC-
Q 022635 10 GSLREGCRRREPLWIVFEVSGTIHLS------SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHD- 82 (294)
Q Consensus 10 GsLr~a~~~~~P~~Ivf~v~G~I~l~------~~l~v~sn~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~~~- 82 (294)
-.|..++.+.+|.++++.|.|+|+++ -.|++.+||||+|.|...+|.|++|.|+.+.|||||||+|++....+
T Consensus 63 ~~l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~ 142 (345)
T COG3866 63 NDLETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDP 142 (345)
T ss_pred HHHHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCC
Confidence 35888899999997777899999998 34677799999999999999999999999999999999999865444
Q ss_pred -CCceEEcCCCceEEEEceeecC--------CCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCC-CCCcceEEEEE
Q 022635 83 -VDGIQIKPNSRHIWIDRCSLRD--------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH-VGDRCIRVTIH 152 (294)
Q Consensus 83 -~D~i~i~~~~~~vwIDHcs~s~--------~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~-~~d~~~~vT~h 152 (294)
.|+|+|+..++|||||||+|.. ..||++|+++++++||||||+|++|+|++|+|.+|+. .+|++++||+|
T Consensus 143 ~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~h 222 (345)
T COG3866 143 NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIH 222 (345)
T ss_pred CCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEe
Confidence 4999997689999999999998 6899999999999999999999999999999999875 45678999999
Q ss_pred ceeecCCCCCcceeecCeEEEEcceEeCccceeEEecCC--ceEEEEceEEEcCCccceeeeehhcccccccCCcceEEE
Q 022635 153 HCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVE--SQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRS 230 (294)
Q Consensus 153 hN~f~~~~~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~--~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~~~~G~~~~ 230 (294)
||||.|+.+|+||+|||.+|+|||||.....|++..+++ |++++|+|||+.+..+..+ +. ....+||+..
T Consensus 223 hNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f--~d------t~~~~GY~~~ 294 (345)
T COG3866 223 HNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGF--LD------TKGTSGYANQ 294 (345)
T ss_pred ccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEEEEecceeccCCCCcee--ee------cCCccceEEe
Confidence 999999999999999999999999999766555555555 9999999999998665443 21 1112499885
Q ss_pred eCCeEeeCceeeecccccceeeecCCCCCCCcccCChhHHHHHHHHhccCCCC
Q 022635 231 EGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS 283 (294)
Q Consensus 231 ~gn~~~~g~~~~~~~~~~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~~ 283 (294)
+-+-|++.+..... ...+..|.|+.+|+ |++++++ .+|++|.++||++.
T Consensus 295 d~gsy~~~s~~~~~--~~~G~~w~ps~~Y~-Ytvd~~~-dVks~Vt~yAGaGk 343 (345)
T COG3866 295 DSGSYLNSSKSMSV--RAGGVTWNPSSYYS-YTVDPPE-DVKSFVTNYAGAGK 343 (345)
T ss_pred ccCceecccCCccc--ccCCccCCCCCCcc-cccCChH-Hhhhhhhcccccee
Confidence 44445444322111 12347899999995 9999995 79999999999764
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=2.7e-53 Score=375.70 Aligned_cols=177 Identities=46% Similarity=0.737 Sum_probs=158.1
Q ss_pred EEEEeceEEEeCceeEeccCeEEEeeccceEEEcCCEEEe-eeccEEEEeeEEEcC----------C--CCCCCceEEcC
Q 022635 24 IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK-ECEHVIICNLEFEGG----------R--GHDVDGIQIKP 90 (294)
Q Consensus 24 Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~i~g~gl~i~-~~~NVIirnl~i~~~----------~--~~~~D~i~i~~ 90 (294)
+||+++|+|+++.+|.|.|||||+|+|.+++|.+.|+.+. +++|||||||+|++. . ..+.|+|.++
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~- 81 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID- 81 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence 4778999999999999999999999999999999999997 899999999999982 1 2678999998
Q ss_pred CCceEEEEceeecCC--------CCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCC
Q 022635 91 NSRHIWIDRCSLRDY--------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQR 162 (294)
Q Consensus 91 ~~~~vwIDHcs~s~~--------~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R 162 (294)
+++|||||||+|+|+ .||++|++.++++||||||+|++|+|++|+|++|....+..++||||||||+++.+|
T Consensus 82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R 161 (200)
T PF00544_consen 82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR 161 (200)
T ss_dssp STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence 889999999999999 999999999999999999999999999999998876666669999999999999999
Q ss_pred cceeecCeEEEEcceEeCccceeEEecCCceEEEEceEE
Q 022635 163 HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIY 201 (294)
Q Consensus 163 ~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f 201 (294)
+||+|+|++|+|||||+++..|++++++++++++|+|||
T Consensus 162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=1.9e-49 Score=348.41 Aligned_cols=168 Identities=44% Similarity=0.712 Sum_probs=157.6
Q ss_pred ceeEeccCeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCC-------
Q 022635 36 SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDY------- 105 (294)
Q Consensus 36 ~~l~v~sn~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~------- 105 (294)
.+|.|+|||||+|+|++++|+|.+|.+..++|||||||+|+++.. ++.|+|.++ ++++||||||+|+|+
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~ 88 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD 88 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence 468899999999999999999999999889999999999998764 678999997 899999999999998
Q ss_pred --CCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeecCeEEEEcceEeCccc
Q 022635 106 --DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 183 (294)
Q Consensus 106 --~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n~~~ 183 (294)
.|+++|+++++++||||||+|.+|+|++|||++++...+..++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus 89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~ 168 (190)
T smart00656 89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS 168 (190)
T ss_pred CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence 899999999999999999999999999999998876555578999999999999999999999999999999999998
Q ss_pred eeEEecCCceEEEEceEEEcC
Q 022635 184 YAVCASVESQIYSQCNIYEAG 204 (294)
Q Consensus 184 ~~~~~~~~~~v~~e~N~f~~g 204 (294)
|+++++.++++++|+|||++.
T Consensus 169 ~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 169 YAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred EeEecCCCcEEEEECeEEECC
Confidence 999999999999999999864
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.31 E-value=2.6e-10 Score=107.71 Aligned_cols=176 Identities=22% Similarity=0.264 Sum_probs=126.5
Q ss_pred HHHHhhcCCCeEEEEEeceEEEeCceeEec-cCeEEEeeccc-eEEE-------cCCEEEeeeccEEEEeeEEEcCCCCC
Q 022635 12 LREGCRRREPLWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQR-IKLT-------GKGLRLKECEHVIICNLEFEGGRGHD 82 (294)
Q Consensus 12 Lr~a~~~~~P~~Ivf~v~G~I~l~~~l~v~-sn~TI~G~g~g-~~i~-------g~gl~i~~~~NVIirnl~i~~~~~~~ 82 (294)
||+|+.+..|..+++--.|+.++++.|.|. +++||.|.|.. ..|. +.+|.+. ++||.|++|+++.. .
T Consensus 1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~-a~~VtI~~ltI~~~---~ 76 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVT-SDDVTLSDLAVENT---K 76 (314)
T ss_pred CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEE-eCCeEEEeeEEEcC---C
Confidence 689999999887777789999998889997 89999999764 4554 3347665 99999999999874 3
Q ss_pred CCceEEcCCCceEEEEceeecCC--------CCCeeEeeeCCccEEEEccEEee-cCeeeEecCCCCCCCCcceEEEEEc
Q 022635 83 VDGIQIKPNSRHIWIDRCSLRDY--------DDGLIDITRQSTDITVSRCYFTQ-HDKTMLIGADPSHVGDRCIRVTIHH 153 (294)
Q Consensus 83 ~D~i~i~~~~~~vwIDHcs~s~~--------~Dg~id~~~~s~~vTiS~~~f~~-h~~~~liG~~d~~~~d~~~~vT~hh 153 (294)
.+||.+. +++++.|.+|.+.|. .+| |.. ..+++++|.+|.++. ++.+..++.+. ++.+.+
T Consensus 77 ~~GI~v~-~s~~i~I~n~~i~~~~~~~~~~~~~G-I~~-~~s~~v~I~~n~i~g~~d~GIyv~~s~--------~~~v~n 145 (314)
T TIGR03805 77 GDGVKVK-GSDGIIIRRLRVEWTGGPKSSNGAYG-IYP-VESTNVLVEDSYVRGASDAGIYVGQSQ--------NIVVRN 145 (314)
T ss_pred CCeEEEe-CCCCEEEEeeEEEeccCccccCCcce-EEE-eccCCEEEECCEEECCCcccEEECCCC--------CeEEEC
Confidence 5799997 889999999999754 455 455 468999999999986 44567777654 578888
Q ss_pred eeecCCCCCcceee-cCeEEEEcceEeCccceeEEe--------cCCceEEEEceEEEcC
Q 022635 154 CLFDGTRQRHPRLR-FGKVHLYNNYTRNWGIYAVCA--------SVESQIYSQCNIYEAG 204 (294)
Q Consensus 154 N~f~~~~~R~P~~r-~g~~h~~NN~~~n~~~~~~~~--------~~~~~v~~e~N~f~~g 204 (294)
|.+.++.. -=.+- -..+.++||.+++.. -++.. .....+.+.+|.|..-
T Consensus 146 N~~~~n~~-GI~i~~S~~~~v~~N~~~~N~-~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 146 NVAEENVA-GIEIENSQNADVYNNIATNNT-GGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred CEEccCcc-eEEEEecCCcEEECCEEeccc-eeEEEeecCCCCcCCccceEEECCEEECC
Confidence 87765421 11111 134678888777543 23322 2245777788888644
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=99.03 E-value=8.2e-09 Score=100.21 Aligned_cols=190 Identities=15% Similarity=0.200 Sum_probs=95.8
Q ss_pred CchHHHHhhcCCCeEEEEEeceEEEeCceeEec------cCeEEEee-ccceEEEcCC-EEEeeeccEEEEeeEEEcCCC
Q 022635 9 PGSLREGCRRREPLWIVFEVSGTIHLSSYLSVS------SYKTIDGR-GQRIKLTGKG-LRLKECEHVIICNLEFEGGRG 80 (294)
Q Consensus 9 ~GsLr~a~~~~~P~~Ivf~v~G~I~l~~~l~v~------sn~TI~G~-g~g~~i~g~g-l~i~~~~NVIirnl~i~~~~~ 80 (294)
.-+|++||++..|...++..+|+.+ ...|.+. ..+||..+ ++++.|.|.. |.|. ++.++|++|.|+.+..
T Consensus 4 ~~~lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~ 81 (425)
T PF14592_consen 4 VAELQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYT 81 (425)
T ss_dssp HHHHHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE--
T ss_pred HHHHHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCC
Confidence 4579999999888877877899999 3356653 46999998 5578888764 7776 7999999999986421
Q ss_pred CC---------C-------------------------CceEE---cCCCceEEEEceeecCC--CCCeeEee-------e
Q 022635 81 HD---------V-------------------------DGIQI---KPNSRHIWIDRCSLRDY--DDGLIDIT-------R 114 (294)
Q Consensus 81 ~~---------~-------------------------D~i~i---~~~~~~vwIDHcs~s~~--~Dg~id~~-------~ 114 (294)
.. . +...+ .-.++|--||||.|..- ..-.+-+. .
T Consensus 82 ~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~ 161 (425)
T PF14592_consen 82 PTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQS 161 (425)
T ss_dssp -TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS--
T ss_pred CCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccc
Confidence 00 0 00111 00245555799999752 22223322 1
Q ss_pred CCccEEEEccEEee-------cCeeeEecCCCCCCCCcceEEEEEceeecCCCCCccee--ecCeEEEEcceEeCcccee
Q 022635 115 QSTDITVSRCYFTQ-------HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL--RFGKVHLYNNYTRNWGIYA 185 (294)
Q Consensus 115 ~s~~vTiS~~~f~~-------h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~--r~g~~h~~NN~~~n~~~~~ 185 (294)
...+-+|.+|+|.. ...++-||.+.....+ -+.++.+|||.+|.+-.=-+ +-+...++||.+++... .
T Consensus 162 ~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Ntf~es~G-~ 238 (425)
T PF14592_consen 162 IANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNTFRESQG-S 238 (425)
T ss_dssp -----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-EEES-SS-E
T ss_pred cccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccEEEeccc-e
Confidence 34577999999984 4456888887543222 27899999999998875444 34566777777766432 2
Q ss_pred EEecCCceEEEEceEEEc
Q 022635 186 VCASVESQIYSQCNIYEA 203 (294)
Q Consensus 186 ~~~~~~~~v~~e~N~f~~ 203 (294)
+..+.|-.-.+++|||..
T Consensus 239 ltlRHGn~n~V~gN~FiG 256 (425)
T PF14592_consen 239 LTLRHGNRNTVEGNVFIG 256 (425)
T ss_dssp EEEEE-SS-EEES-EEEE
T ss_pred EEEecCCCceEeccEEec
Confidence 333333333345555553
No 6
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.73 E-value=8.4e-07 Score=83.94 Aligned_cols=142 Identities=16% Similarity=0.195 Sum_probs=97.1
Q ss_pred CCEEEeeeccEEEEeeEEEcCCC----CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeee
Q 022635 58 KGLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTM 133 (294)
Q Consensus 58 ~gl~i~~~~NVIirnl~i~~~~~----~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~ 133 (294)
.++.+.+++|++||++++..... ...+||.+. .++++.|.+|.++...|--+-+ ..+++++|++|.+.+..++.
T Consensus 78 ~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI 155 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGI 155 (314)
T ss_pred CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceE
Confidence 46777889999999999985421 346889887 8999999999999887744666 46899999999998777776
Q ss_pred EecCCCCCCCCcceEEEEEceeecCCCCCc--------ceeecCeEEEEcceEeCccc----------------eeEEec
Q 022635 134 LIGADPSHVGDRCIRVTIHHCLFDGTRQRH--------PRLRFGKVHLYNNYTRNWGI----------------YAVCAS 189 (294)
Q Consensus 134 liG~~d~~~~d~~~~vT~hhN~f~~~~~R~--------P~~r~g~~h~~NN~~~n~~~----------------~~~~~~ 189 (294)
.+-.+. ++.+.+|.+.++..-- |.+....+.+++|.+.+... .++-..
T Consensus 156 ~i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~ 227 (314)
T TIGR03805 156 EIENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVM 227 (314)
T ss_pred EEEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEE
Confidence 665443 4577777776654321 11222356788887654311 122222
Q ss_pred CCceEEEEceEEEcCCccce
Q 022635 190 VESQIYSQCNIYEAGQKKRT 209 (294)
Q Consensus 190 ~~~~v~~e~N~f~~g~~~~~ 209 (294)
...++.+++|.|........
T Consensus 228 ~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 228 ANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred cccceEEECCEEeCCcceeE
Confidence 33677889999987655433
No 7
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.51 E-value=1.3e-05 Score=78.54 Aligned_cols=112 Identities=17% Similarity=0.206 Sum_probs=77.8
Q ss_pred chHHHHhhcCC-CeEEEEEeceEEEeCceeEeccCeEEEeeccceE---EEcCC-EE-EeeeccEEEEeeEEEcCC---C
Q 022635 10 GSLREGCRRRE-PLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIK---LTGKG-LR-LKECEHVIICNLEFEGGR---G 80 (294)
Q Consensus 10 GsLr~a~~~~~-P~~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~---i~g~g-l~-i~~~~NVIirnl~i~~~~---~ 80 (294)
-.|++|+++.. |...|.--.|+.. ..+|.+.+++||.|+. +++ |.|.+ +. -..++||.|++|+|++.. .
T Consensus 55 ~ALQaAIdaAa~gG~tV~Lp~G~Y~-~G~L~L~spltL~G~~-gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~ 132 (455)
T TIGR03808 55 RALQRAIDEAARAQTPLALPPGVYR-TGPLRLPSGAQLIGVR-GATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLP 132 (455)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcee-cccEEECCCcEEEecC-CcEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCccc
Confidence 36999997733 3332333678773 3779999999999994 343 66554 22 235999999999999754 2
Q ss_pred CCCCceEEcCCCceEEEEceeecCC-CCCeeEeeeCCccEEEEccEEe
Q 022635 81 HDVDGIQIKPNSRHIWIDRCSLRDY-DDGLIDITRQSTDITVSRCYFT 127 (294)
Q Consensus 81 ~~~D~i~i~~~~~~vwIDHcs~s~~-~Dg~id~~~~s~~vTiS~~~f~ 127 (294)
....+|.+. .++++-|.+|+|... ..| +.+. .++ ..|+.|.+.
T Consensus 133 ~rdAgI~v~-~a~~v~Iedn~L~gsg~FG-I~L~-~~~-~~I~~N~I~ 176 (455)
T TIGR03808 133 QRRGLIHCQ-GGRDVRITDCEITGSGGNG-IWLE-TVS-GDISGNTIT 176 (455)
T ss_pred CCCCEEEEc-cCCceEEEeeEEEcCCcce-EEEE-cCc-ceEecceEe
Confidence 345678885 899999999999988 477 5563 455 444444444
No 8
>PLN02218 polygalacturonase ADPG
Probab=98.45 E-value=6.7e-06 Score=80.94 Aligned_cols=100 Identities=21% Similarity=0.320 Sum_probs=73.4
Q ss_pred eeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCC
Q 022635 64 ECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV 142 (294)
Q Consensus 64 ~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~ 142 (294)
.++||+|++|+|.... ....|||.+. +++||.|.+|.+..+.|- |.++.+++||+|++|.+. +..+.-||+.....
T Consensus 222 ~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDDc-IaIksgs~nI~I~n~~c~-~GHGisIGS~g~~~ 298 (431)
T PLN02218 222 KCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDDC-ISIESGSQNVQINDITCG-PGHGISIGSLGDDN 298 (431)
T ss_pred ceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCce-EEecCCCceEEEEeEEEE-CCCCEEECcCCCCC
Confidence 4566666666666532 3568999997 899999999999988654 899989999999999996 34457788754321
Q ss_pred -CCcceEEEEEceeecCCCCCcceee
Q 022635 143 -GDRCIRVTIHHCLFDGTRQRHPRLR 167 (294)
Q Consensus 143 -~d~~~~vT~hhN~f~~~~~R~P~~r 167 (294)
.+...+|++.++.|.++. +.=|++
T Consensus 299 ~~~~V~nV~v~n~~~~~t~-nGvRIK 323 (431)
T PLN02218 299 SKAFVSGVTVDGAKLSGTD-NGVRIK 323 (431)
T ss_pred CCceEEEEEEEccEEecCC-cceEEe
Confidence 222358999999887753 455554
No 9
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.43 E-value=1.1e-05 Score=79.60 Aligned_cols=104 Identities=24% Similarity=0.419 Sum_probs=79.5
Q ss_pred EEEeeeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCC
Q 022635 60 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 138 (294)
Q Consensus 60 l~i~~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~ 138 (294)
+.+..++||.|++|+|..+. ....|||.+. .++||+|.+|.+..+.|. +.++.+++||+|++|.+.. ..+.-||+.
T Consensus 164 i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSl 240 (456)
T PLN03003 164 IHISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSL 240 (456)
T ss_pred EEEeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeec
Confidence 44556788888888888753 4678999997 899999999999988776 8898899999999999863 346778875
Q ss_pred CCCC-CCcceEEEEEceeecCCCCCcceee
Q 022635 139 PSHV-GDRCIRVTIHHCLFDGTRQRHPRLR 167 (294)
Q Consensus 139 d~~~-~d~~~~vT~hhN~f~~~~~R~P~~r 167 (294)
.... .+...+|++.++.|.++. +.-|++
T Consensus 241 g~~g~~~~V~NV~v~n~~~~~T~-nGvRIK 269 (456)
T PLN03003 241 GKDGETATVENVCVQNCNFRGTM-NGARIK 269 (456)
T ss_pred cCCCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence 4321 223458999999998863 344654
No 10
>PLN02155 polygalacturonase
Probab=98.40 E-value=8.6e-06 Score=79.32 Aligned_cols=99 Identities=17% Similarity=0.322 Sum_probs=72.6
Q ss_pred eeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCC-
Q 022635 64 ECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH- 141 (294)
Q Consensus 64 ~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~- 141 (294)
.++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.|. +.++.++++|+|++|.+.. ..++-||+....
T Consensus 175 ~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~g~~~ 251 (394)
T PLN02155 175 GCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSLAKEL 251 (394)
T ss_pred CeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEeccccccC
Confidence 4456666666665432 3567999997 899999999999988885 7898889999999999874 446778885322
Q ss_pred CCCcceEEEEEceeecCCCCCccee
Q 022635 142 VGDRCIRVTIHHCLFDGTRQRHPRL 166 (294)
Q Consensus 142 ~~d~~~~vT~hhN~f~~~~~R~P~~ 166 (294)
......+|++.++.|.++. |.=|+
T Consensus 252 ~~~~V~nV~v~n~~~~~t~-~GirI 275 (394)
T PLN02155 252 NEDGVENVTVSSSVFTGSQ-NGVRI 275 (394)
T ss_pred CCCcEEEEEEEeeEEeCCC-cEEEE
Confidence 1223358999999998764 44555
No 11
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.38 E-value=8.9e-06 Score=66.98 Aligned_cols=133 Identities=18% Similarity=0.281 Sum_probs=88.6
Q ss_pred CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCC
Q 022635 59 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 138 (294)
Q Consensus 59 gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~ 138 (294)
||.+....++.|++.+|+.. ..+||.+. .+..+.|+.|+|.+...+ +.+. ...++++++|.|.+...+..+-..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i~~~~~~~~~~~i~~~~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYG-IYVS-GGSNVTISNNTISDNGSGIYVSGS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTS-EEEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcE-EEEe-cCCCeEEECeEEEEccceEEEEec
Confidence 57787788999999999974 57899997 777789999999996666 5663 569999999999987755444432
Q ss_pred CCCCCCcceEEEEEceeecCCCCCcceee--cCeEEEEcceEeCccceeEEecCCc--eEEEEceEEEcCC
Q 022635 139 PSHVGDRCIRVTIHHCLFDGTRQRHPRLR--FGKVHLYNNYTRNWGIYAVCASVES--QIYSQCNIYEAGQ 205 (294)
Q Consensus 139 d~~~~d~~~~vT~hhN~f~~~~~R~P~~r--~g~~h~~NN~~~n~~~~~~~~~~~~--~v~~e~N~f~~g~ 205 (294)
. .+++.+|.+.++..-.=.+. ...+.+.||.+.+....++...... .+.+++|.|....
T Consensus 76 ~--------~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 76 S--------NITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNG 138 (158)
T ss_dssp C--------S-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECES
T ss_pred C--------CceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCc
Confidence 2 58899998888765443332 2457889998888766666554444 8888899887644
No 12
>PLN02793 Probable polygalacturonase
Probab=98.37 E-value=1.4e-05 Score=78.96 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=72.8
Q ss_pred eeeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCC
Q 022635 63 KECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 141 (294)
Q Consensus 63 ~~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~ 141 (294)
..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. +.++.+++||+|++|.+.. ..+.-||+....
T Consensus 206 ~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~~-GhGisIGSlg~~ 282 (443)
T PLN02793 206 TNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACGP-GHGISIGSLGKS 282 (443)
T ss_pred EccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEeC-CccEEEecccCc
Confidence 34566666666666543 3568999997 899999999999977665 7888889999999999863 345778875321
Q ss_pred -CCCcceEEEEEceeecCCCCCcceee
Q 022635 142 -VGDRCIRVTIHHCLFDGTRQRHPRLR 167 (294)
Q Consensus 142 -~~d~~~~vT~hhN~f~~~~~R~P~~r 167 (294)
......+|++.++.|.++. +.=|++
T Consensus 283 ~~~~~V~nV~v~n~~~~~t~-~GirIK 308 (443)
T PLN02793 283 NSWSEVRDITVDGAFLSNTD-NGVRIK 308 (443)
T ss_pred CCCCcEEEEEEEccEEeCCC-ceEEEE
Confidence 1122358999999888764 455554
No 13
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.34 E-value=1.9e-05 Score=77.20 Aligned_cols=99 Identities=21% Similarity=0.373 Sum_probs=72.3
Q ss_pred eeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCC-
Q 022635 64 ECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH- 141 (294)
Q Consensus 64 ~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~- 141 (294)
.++||.|++|+|.... ....|||.++ .+++|+|.+|.+..+.|. +.++.++++|+|+++... +.-++-||+-...
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDDc-Iaiksg~~nI~I~n~~c~-~ghGisiGSlG~~~ 261 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDDC-ISIGQGNSQVTITRIRCG-PGHGISVGSLGRYP 261 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCcE-EEEccCCccEEEEEEEEc-CCCcEEeCCCCCCC
Confidence 4566666666666532 3568999997 899999999999988885 889889999999999885 3446778873221
Q ss_pred CCCcceEEEEEceeecCCCCCccee
Q 022635 142 VGDRCIRVTIHHCLFDGTRQRHPRL 166 (294)
Q Consensus 142 ~~d~~~~vT~hhN~f~~~~~R~P~~ 166 (294)
......+|++.++.|.++. +.=|+
T Consensus 262 ~~~~V~nV~v~n~~~~~t~-~Giri 285 (404)
T PLN02188 262 NEGDVTGLVVRDCTFTGTT-NGIRI 285 (404)
T ss_pred cCCcEEEEEEEeeEEECCC-cEEEE
Confidence 1122358999999988763 34444
No 14
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.32 E-value=7.7e-05 Score=65.40 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=66.3
Q ss_pred hHHHHh--hcCCCeEEEEEeceEEEeCceeEeccCeEEEeeccce-EEE--cC--CE-------EEee-ecc--EEEEee
Q 022635 11 SLREGC--RRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRI-KLT--GK--GL-------RLKE-CEH--VIICNL 73 (294)
Q Consensus 11 sLr~a~--~~~~P~~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~-~i~--g~--gl-------~i~~-~~N--VIirnl 73 (294)
.|++|+ .+....-+|+-..|++.++.+|.+.++++|.|.|... .+. +. .+ .+.. ..+ +.|+||
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl 99 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL 99 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence 589999 4444445555589999999999999999999997643 343 11 11 1211 122 449999
Q ss_pred EEEcCCCC---CCCceEEcCCCceEEEEceeecCCCCCeeEe
Q 022635 74 EFEGGRGH---DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDI 112 (294)
Q Consensus 74 ~i~~~~~~---~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~ 112 (294)
+|...... ...+|.+. .+++++|++|++.......+.+
T Consensus 100 ~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~ 140 (225)
T PF12708_consen 100 TIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYF 140 (225)
T ss_dssp EEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEE
T ss_pred EEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEE
Confidence 99987532 24678886 7899999999999864444555
No 15
>PLN02218 polygalacturonase ADPG
Probab=98.27 E-value=0.00014 Score=71.61 Aligned_cols=134 Identities=17% Similarity=0.164 Sum_probs=91.9
Q ss_pred EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC-----CCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635 60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 134 (294)
Q Consensus 60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~-----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l 134 (294)
|.+.+++|+.|++|+|+.... =.|.+. .+++|.|++.++.. ..|| ||+ ..+++|+|++|.|...+-+.-
T Consensus 195 i~f~~~~nv~I~gitl~nSp~---w~i~~~-~~~nV~i~~v~I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIa 268 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNAQQ---IQISIE-KCSNVQVSNVVVTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCIS 268 (431)
T ss_pred EEEEccccEEEeCeEEEcCCC---EEEEEE-ceeeEEEEEEEEeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEE
Confidence 566789999999999998643 467776 89999999999854 6799 899 479999999999998888887
Q ss_pred ecCCCCCCCCcceEEEEEceeecCCCC-------Cccee-ecCeEEEEcceEeCccceeEE-----e--cCCceEEEEce
Q 022635 135 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVC-----A--SVESQIYSQCN 199 (294)
Q Consensus 135 iG~~d~~~~d~~~~vT~hhN~f~~~~~-------R~P~~-r~g~~h~~NN~~~n~~~~~~~-----~--~~~~~v~~e~N 199 (294)
|.+.. .+|++.++++....+ +.+.- ..-.+++.|+.+.+.. .++. + +.-..|.+++.
T Consensus 269 Iksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni 340 (431)
T PLN02218 269 IESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNI 340 (431)
T ss_pred ecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeE
Confidence 76542 268888887743322 11100 0114567777666543 2331 1 22246677777
Q ss_pred EEEcCCcc
Q 022635 200 IYEAGQKK 207 (294)
Q Consensus 200 ~f~~g~~~ 207 (294)
.+++...+
T Consensus 341 ~m~~V~~p 348 (431)
T PLN02218 341 QMENVKNP 348 (431)
T ss_pred EEEccccc
Confidence 77776554
No 16
>PLN03010 polygalacturonase
Probab=98.12 E-value=0.001 Score=65.26 Aligned_cols=119 Identities=25% Similarity=0.455 Sum_probs=76.1
Q ss_pred cCeEEEeeccceEEEcCC------EEEeeeccEEEEeeEEEcC-----------------------C-CCCCCceEEcCC
Q 022635 42 SYKTIDGRGQRIKLTGKG------LRLKECEHVIICNLEFEGG-----------------------R-GHDVDGIQIKPN 91 (294)
Q Consensus 42 sn~TI~G~g~g~~i~g~g------l~i~~~~NVIirnl~i~~~-----------------------~-~~~~D~i~i~~~ 91 (294)
.+++|.|.| +|.|.| |.+.+++|+.|++|+++.. . ....|||.+. .
T Consensus 139 ~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~-~ 214 (409)
T PLN03010 139 SGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDIS-Y 214 (409)
T ss_pred cccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeee-c
Confidence 345555542 455544 4555566666666666533 1 2467999997 8
Q ss_pred CceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCC-CCCcceEEEEEceeecCCCCCcceee
Q 022635 92 SRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH-VGDRCIRVTIHHCLFDGTRQRHPRLR 167 (294)
Q Consensus 92 ~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~-~~d~~~~vT~hhN~f~~~~~R~P~~r 167 (294)
+++|+|.+|.+..+.|. +.++.++++++|.++... ..-+.-||+.... ..+...+|++.++.|.++. +.-|++
T Consensus 215 s~nV~I~n~~I~~gDDc-Iaiksgs~ni~I~~~~C~-~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~GirIK 288 (409)
T PLN03010 215 STNINIFDSTIQTGDDC-IAINSGSSNINITQINCG-PGHGISVGSLGADGANAKVSDVHVTHCTFNQTT-NGARIK 288 (409)
T ss_pred cceEEEEeeEEecCCCe-EEecCCCCcEEEEEEEeE-CcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCC-cceEEE
Confidence 99999999999887555 888888878777766664 2335667765332 1122357899988887653 344443
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=98.09 E-value=3e-05 Score=73.62 Aligned_cols=104 Identities=26% Similarity=0.482 Sum_probs=73.3
Q ss_pred EEEeeeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCC
Q 022635 60 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 138 (294)
Q Consensus 60 l~i~~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~ 138 (294)
+.+..++||.|++|+|+... ....|||.+. ++++|.|++|.+..+.|. +.++.++.+|+|++|.|.. ..+.-+|+.
T Consensus 118 ~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~n~~~~~-ghGisiGS~ 194 (326)
T PF00295_consen 118 IHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDDC-IAIKSGSGNILVENCTCSG-GHGISIGSE 194 (326)
T ss_dssp EEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSES-EEESSEECEEEEESEEEES-SSEEEEEEE
T ss_pred EEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccCc-ccccccccceEEEeEEEec-cccceeeec
Confidence 44456777777777777643 3568999997 899999999999887665 8888777799999999973 445777764
Q ss_pred CCCC-CCcceEEEEEceeecCCCCCcceee
Q 022635 139 PSHV-GDRCIRVTIHHCLFDGTRQRHPRLR 167 (294)
Q Consensus 139 d~~~-~d~~~~vT~hhN~f~~~~~R~P~~r 167 (294)
.... ...-.+|+|.++.+.++. |.-|++
T Consensus 195 ~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK 223 (326)
T PF00295_consen 195 GSGGSQNDIRNVTFENCTIINTD-NGIRIK 223 (326)
T ss_dssp SSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred cCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence 3221 111248999999888764 555554
No 18
>PLN03010 polygalacturonase
Probab=98.06 E-value=0.00039 Score=68.10 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=64.1
Q ss_pred EEEEeceEEEeCceeEe----cc--CeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCC----------CCCCCceE
Q 022635 24 IVFEVSGTIHLSSYLSV----SS--YKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR----------GHDVDGIQ 87 (294)
Q Consensus 24 Ivf~v~G~I~l~~~l~v----~s--n~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~----------~~~~D~i~ 87 (294)
|.|.+.|+|.....+.- .. .+...++ .+++|.|.|..=.+.. .-.+-|+|.... ....=.|.
T Consensus 107 v~l~l~G~l~~~~d~~~w~~~~~~~wi~f~~v-~nv~I~G~G~IDG~G~-~ww~~l~~~~~~nv~v~gitl~nsp~~~i~ 184 (409)
T PLN03010 107 IKVQLDGIIVAPSNIVAWSNPKSQMWISFSTV-SGLMIDGSGTIDGRGS-SFWEALHISKCDNLTINGITSIDSPKNHIS 184 (409)
T ss_pred EEEEEccEEEccCChhhccCCCCcceEEEecc-cccEEeeceEEeCCCc-cccceEEEEeecCeEEeeeEEEcCCceEEE
Confidence 67777788887654311 11 2333332 5778888775332111 111223343332 13333444
Q ss_pred EcCCCceEEEEceeec-----CCCCCeeEeeeCCccEEEEccEEeecCeeeEecCC
Q 022635 88 IKPNSRHIWIDRCSLR-----DYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 138 (294)
Q Consensus 88 i~~~~~~vwIDHcs~s-----~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~ 138 (294)
+. .+++|.|++.++. ...|| ||+ ..+++|+|++|.|...+-+.-+.+.
T Consensus 185 i~-~~~nv~i~~i~I~a~~~s~NTDG-iDi-~~s~nV~I~n~~I~~gDDcIaiksg 237 (409)
T PLN03010 185 IK-TCNYVAISKINILAPETSPNTDG-IDI-SYSTNINIFDSTIQTGDDCIAINSG 237 (409)
T ss_pred Ee-ccccEEEEEEEEeCCCCCCCCCc-eee-eccceEEEEeeEEecCCCeEEecCC
Confidence 54 6788888888774 35688 777 3688888888888887777777553
No 19
>PLN02793 Probable polygalacturonase
Probab=97.99 E-value=0.0022 Score=63.54 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=88.7
Q ss_pred EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC-----CCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635 60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 134 (294)
Q Consensus 60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~-----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l 134 (294)
|.+.+++||.|++|+++.... =.+.+. .+++|.|++.++.. ..|| ||+ ..+++|+|++|.|...+-+..
T Consensus 180 i~f~~~~nv~v~gitl~nSp~---~~i~~~-~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIa 253 (443)
T PLN02793 180 ITFHKCKDLRVENLNVIDSQQ---MHIAFT-NCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCIS 253 (443)
T ss_pred EEEEeeccEEEECeEEEcCCC---eEEEEE-ccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEE
Confidence 566689999999999998643 346676 89999999999953 5799 899 479999999999999888888
Q ss_pred ecCCCCCCCCcceEEEEEceeecCCCC-------Cccee-ecCeEEEEcceEeCccceeEE-----e--cCCceEEEEce
Q 022635 135 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVC-----A--SVESQIYSQCN 199 (294)
Q Consensus 135 iG~~d~~~~d~~~~vT~hhN~f~~~~~-------R~P~~-r~g~~h~~NN~~~n~~~~~~~-----~--~~~~~v~~e~N 199 (294)
+.... .+|++.++.+....+ +.... ..-.+.+.|+.+.+.. +++. + +.-..|.+++-
T Consensus 254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni 325 (443)
T PLN02793 254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI 325 (443)
T ss_pred ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence 86432 167887776633221 11110 1123677777776543 2321 1 11235555665
Q ss_pred EEEcCCcc
Q 022635 200 IYEAGQKK 207 (294)
Q Consensus 200 ~f~~g~~~ 207 (294)
.+++...+
T Consensus 326 ~m~nv~~p 333 (443)
T PLN02793 326 FMENVSNP 333 (443)
T ss_pred EEecCCce
Confidence 55555443
No 20
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.94 E-value=0.001 Score=60.84 Aligned_cols=128 Identities=15% Similarity=0.164 Sum_probs=88.7
Q ss_pred CCCCCc-------hHHHHhhcCCCeEEEEEeceEEEeCc----eeEeccCeEEEee----cc----------ceEEEcCC
Q 022635 5 IDDGPG-------SLREGCRRREPLWIVFEVSGTIHLSS----YLSVSSYKTIDGR----GQ----------RIKLTGKG 59 (294)
Q Consensus 5 ~dsg~G-------sLr~a~~~~~P~~Ivf~v~G~I~l~~----~l~v~sn~TI~G~----g~----------g~~i~g~g 59 (294)
+|+++| +|.+|++...|..+|.--.|++.-.. +|.+.+.+||.|. |. ++.|.|.+
T Consensus 4 ~D~~~Gs~~~P~~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~ 83 (246)
T PF07602_consen 4 NDSNDGSQSAPFKTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGG 83 (246)
T ss_pred ccCCCCccccCHHHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccC
Confidence 566666 57789988888888877899998653 5888899999986 22 22344433
Q ss_pred -------EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCC-CCCeeEe----eeCCccEEEEccEEe
Q 022635 60 -------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY-DDGLIDI----TRQSTDITVSRCYFT 127 (294)
Q Consensus 60 -------l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~-~Dg~id~----~~~s~~vTiS~~~f~ 127 (294)
+.|..+++..|+.++|+.+....+-||.++ ++ +.-|..|+|..+ .+|.+.. +....+++|+.|.+.
T Consensus 84 ~~~~~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~ 161 (246)
T PF07602_consen 84 PDLSGQNVTIILANNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIY 161 (246)
T ss_pred ccccceeEEEEecCCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEE
Confidence 455567889999999998754457788886 44 888899999985 5664221 113356777777776
Q ss_pred ecCeeeE
Q 022635 128 QHDKTML 134 (294)
Q Consensus 128 ~h~~~~l 134 (294)
....+.-
T Consensus 162 ~~~~Gi~ 168 (246)
T PF07602_consen 162 FNKTGIS 168 (246)
T ss_pred ecCcCeE
Confidence 5444433
No 21
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.91 E-value=0.00025 Score=58.20 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=78.7
Q ss_pred CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCe-eeEecC
Q 022635 59 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDK-TMLIGA 137 (294)
Q Consensus 59 gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~-~~liG~ 137 (294)
++.+...+++.|++-+|+. ...||.+. ...++.|+.|.|++...+ +.+. .+..++|++|.|.+... ++.+..
T Consensus 25 gi~~~~~~~~~i~n~~i~~----~~~gi~~~-~~~~~~i~~~~~~~~~~~-i~~~-~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN----GGYGIYVS-GGSNVTISNNTISDNGSG-IYVS-GSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp CEEE-SSCESEEES-EEES----STTSEEEE-CCES-EEES-EEES-SEE-EECC-S-CS-EEES-EEECSSS-SCE-TC
T ss_pred EEEEEcCCCeEEECeEEEC----CCcEEEEe-cCCCeEEECeEEEEccce-EEEE-ecCCceecCcEEEcCCCccEEEec
Confidence 5777667777888888887 46788886 668899999999887733 5563 78889999999987655 555543
Q ss_pred -CCCCCCCcceEEEEEceeecCCCCCcceeec-C--eEEEEcceEeCccceeEEecCCce-EEEEceEE
Q 022635 138 -DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-G--KVHLYNNYTRNWGIYAVCASVESQ-IYSQCNIY 201 (294)
Q Consensus 138 -~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g--~~h~~NN~~~n~~~~~~~~~~~~~-v~~e~N~f 201 (294)
. ..+++.+|.|.++....=.+.. . .+-+.+|.+.+...+++.....+. +.+.+|.|
T Consensus 98 ~~--------~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~ 158 (158)
T PF13229_consen 98 SS--------SNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF 158 (158)
T ss_dssp EE--------CS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred cC--------CCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence 1 1578888888888754444432 2 567788888887777775554444 77778876
No 22
>PLN02480 Probable pectinesterase
Probab=97.88 E-value=0.003 Score=60.58 Aligned_cols=103 Identities=12% Similarity=0.239 Sum_probs=73.1
Q ss_pred CCCCc---hHHHHhhcCC----CeEEEEEeceEEEeCceeEe---ccCeEEEeeccc-eEEEcC----------CEEEee
Q 022635 6 DDGPG---SLREGCRRRE----PLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQR-IKLTGK----------GLRLKE 64 (294)
Q Consensus 6 dsg~G---sLr~a~~~~~----P~~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g-~~i~g~----------gl~i~~ 64 (294)
.+|.| ||++||++.. .++++|-..|+.+ ++|.| .+++||.|.|.. ..|.+. .|.|.
T Consensus 54 ~~G~g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~- 130 (343)
T PLN02480 54 INGKGDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVE- 130 (343)
T ss_pred CCCCCCcccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEE-
Confidence 34544 8999997732 3556666689999 88888 367999999743 334321 25665
Q ss_pred eccEEEEeeEEEcCCC------CCCCceEEcCCCceEEEEceeecCCCCCeeE
Q 022635 65 CEHVIICNLEFEGGRG------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID 111 (294)
Q Consensus 65 ~~NVIirnl~i~~~~~------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id 111 (294)
+++++++||+|++..+ ...-|+.+.-.++++.+.+|.|....|=|++
T Consensus 131 a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~ 183 (343)
T PLN02480 131 APHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFD 183 (343)
T ss_pred CCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEe
Confidence 8999999999998632 1234555543689999999999887777653
No 23
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.82 E-value=0.0012 Score=59.39 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=29.1
Q ss_pred EEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635 61 RLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTML 134 (294)
Q Consensus 61 ~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l 134 (294)
.+..+.++.|++.+|+.. ..||.+. .++++-|..|.++....| +.+. .+.+.+|++|.|.+...+.+
T Consensus 39 ~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~G-i~l~-~s~~~~I~~N~i~~n~~GI~ 105 (236)
T PF05048_consen 39 YVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYG-IYLM-GSSNNTISNNTISNNGYGIY 105 (236)
T ss_pred EEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCC-EEEE-cCCCcEEECCEecCCCceEE
Confidence 334455555555555542 3444443 344444444444444444 2232 22222455554444433333
No 24
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.81 E-value=0.00053 Score=67.95 Aligned_cols=124 Identities=19% Similarity=0.355 Sum_probs=86.6
Q ss_pred cCeEEEeeccceEEEcCC-------------EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC----
Q 022635 42 SYKTIDGRGQRIKLTGKG-------------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD---- 104 (294)
Q Consensus 42 sn~TI~G~g~g~~i~g~g-------------l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~---- 104 (294)
.+++|.|.| +|.|.| |.+..++|+.|++|+++... .=.|.+. .+++|.|++.++..
T Consensus 113 ~~i~I~G~G---tIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp---~w~i~i~-~c~nV~i~~l~I~ap~~s 185 (456)
T PLN03003 113 EGLVIEGDG---EINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP---MAHIHIS-ECNYVTISSLRINAPESS 185 (456)
T ss_pred cceEEeccc---eEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCC---cEEEEEe-ccccEEEEEEEEeCCCCC
Confidence 356666643 566543 67778999999999999864 3456776 89999999999864
Q ss_pred -CCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCC-------Cccee-ecCeEEEEc
Q 022635 105 -YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYN 175 (294)
Q Consensus 105 -~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~-------R~P~~-r~g~~h~~N 175 (294)
..|| ||+ ..+++|+|.+|.|...+-+.-+.+... +|++.++.+....+ +.... ..-.+++.|
T Consensus 186 pNTDG-IDi-~~S~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n 256 (456)
T PLN03003 186 PNTDG-IDV-GASSNVVIQDCIIATGDDCIAINSGTS-------NIHISGIDCGPGHGISIGSLGKDGETATVENVCVQN 256 (456)
T ss_pred CCCCc-Eee-cCcceEEEEecEEecCCCeEEeCCCCc-------cEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEe
Confidence 5799 899 479999999999999888888875421 57777766543211 11100 012467888
Q ss_pred ceEeCc
Q 022635 176 NYTRNW 181 (294)
Q Consensus 176 N~~~n~ 181 (294)
+.+.+.
T Consensus 257 ~~~~~T 262 (456)
T PLN03003 257 CNFRGT 262 (456)
T ss_pred eEEECC
Confidence 877764
No 25
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.78 E-value=0.00082 Score=60.36 Aligned_cols=129 Identities=19% Similarity=0.144 Sum_probs=84.1
Q ss_pred CCEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecC
Q 022635 58 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGA 137 (294)
Q Consensus 58 ~gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~ 137 (294)
.|+.+..++++.|++.++.. ..+||.+. .+.++-|..|+++....| +.+ ..+..++|++|.|.+...+.++..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~----~~~gi~~~-~s~~~~I~~n~i~~~~~G-I~~-~~s~~~~i~~n~i~~n~~Gi~l~~ 86 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISN----SRDGIYVE-NSDNNTISNNTISNNRYG-IHL-MGSSNNTIENNTISNNGYGIYLMG 86 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEe----CCCEEEEE-EcCCeEEEeeEEECCCeE-EEE-EccCCCEEEeEEEEccCCCEEEEc
Confidence 67888888999999999985 36888776 889999999999999888 455 368889999999998777766655
Q ss_pred CCCCCCCcceEEEEEceeecCCCCCcceeec-CeEEEEcceEeCccceeEEecCCceEEEEceEEEc
Q 022635 138 DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 203 (294)
Q Consensus 138 ~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~ 203 (294)
+. ..++..|.|.++.. --.+.. ....+.+|.+.+. .+++.........+++|.|..
T Consensus 87 s~--------~~~I~~N~i~~n~~-GI~l~~s~~~~I~~N~i~~~-~~GI~l~~s~~n~I~~N~i~~ 143 (236)
T PF05048_consen 87 SS--------NNTISNNTISNNGY-GIYLYGSSNNTISNNTISNN-GYGIYLSSSSNNTITGNTISN 143 (236)
T ss_pred CC--------CcEEECCEecCCCc-eEEEeeCCceEEECcEEeCC-CEEEEEEeCCCCEEECeEEeC
Confidence 43 23566666555544 222221 2234555544422 233333332333344444433
No 26
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.74 E-value=0.0032 Score=60.89 Aligned_cols=174 Identities=16% Similarity=0.286 Sum_probs=128.9
Q ss_pred hHHHHhhcCCCeEEEEEeceEEEeCceeEeccCeEEEeeccceEEEcC---CEEEe---------eeccEEEEeeEEEcC
Q 022635 11 SLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGK---GLRLK---------ECEHVIICNLEFEGG 78 (294)
Q Consensus 11 sLr~a~~~~~P~~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~i~g~---gl~i~---------~~~NVIirnl~i~~~ 78 (294)
.|.+|+.+-. .|-.+-+-++.+.++|.|++...|+|+|+.+.|.+. +|.+. +=.+|.+.|++|...
T Consensus 56 Dle~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~ 133 (386)
T PF01696_consen 56 DLEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR 133 (386)
T ss_pred CHHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC
Confidence 5888888866 344567788888899999999999999998888643 25443 347999999999975
Q ss_pred CCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecC
Q 022635 79 RGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDG 158 (294)
Q Consensus 79 ~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~ 158 (294)
. ..-|+-+. ...++.|..|.|....--.++.. ....|.-|.|..-+++..... +..+++.+|.|+.
T Consensus 134 ~--~~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~~--------~~~lsVk~C~Fek 199 (386)
T PF01696_consen 134 D--TFSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSRG--------KSKLSVKKCVFEK 199 (386)
T ss_pred C--ccceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecCC--------cceEEeeheeeeh
Confidence 4 23556565 67999999999998777777663 678899999998888874332 2368889999998
Q ss_pred CCCCcceeecCeEEEEcceEeCccceeEEecCCceEEEEceEEEcCC
Q 022635 159 TRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQ 205 (294)
Q Consensus 159 ~~~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~ 205 (294)
|.-=- +..|.+++.+|...+..-..+-.+ .-.+.+|.|....
T Consensus 200 C~igi--~s~G~~~i~hn~~~ec~Cf~l~~g---~g~i~~N~v~~~~ 241 (386)
T PF01696_consen 200 CVIGI--VSEGPARIRHNCASECGCFVLMKG---TGSIKHNMVCGPN 241 (386)
T ss_pred eEEEE--EecCCeEEecceecccceEEEEcc---cEEEeccEEeCCC
Confidence 86533 345889999998888654333322 2345788887654
No 27
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.63 E-value=0.00092 Score=63.54 Aligned_cols=130 Identities=20% Similarity=0.338 Sum_probs=88.3
Q ss_pred EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC-----CCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635 60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 134 (294)
Q Consensus 60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~-----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l 134 (294)
|.+..++|+.|++|+++....+ .+.+. .+++|+|+|.++.. ..|| ||+ ..+++|+|.+|.|...+-+.-
T Consensus 95 i~~~~~~~~~i~~i~~~nsp~w---~~~~~-~~~nv~i~~i~I~~~~~~~NtDG-id~-~~s~nv~I~n~~i~~gDD~Ia 168 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSPFW---HIHIN-DCDNVTISNITINNPANSPNTDG-IDI-DSSKNVTIENCFIDNGDDCIA 168 (326)
T ss_dssp EEEEEEEEEEEESEEEES-SSE---SEEEE-SEEEEEEESEEEEEGGGCTS--S-EEE-ESEEEEEEESEEEESSSESEE
T ss_pred eeeeeecceEEEeeEecCCCee---EEEEE-ccCCeEEcceEEEecCCCCCcce-EEE-EeeeEEEEEEeecccccCccc
Confidence 7888899999999999986543 57776 89999999999853 4799 798 478999999999998888877
Q ss_pred ecCCCCCCCCcceEEEEEceeecCCCCCcceee---cC-------eEEEEcceEeCccceeEEe--c-----CCceEEEE
Q 022635 135 IGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR---FG-------KVHLYNNYTRNWGIYAVCA--S-----VESQIYSQ 197 (294)
Q Consensus 135 iG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r---~g-------~~h~~NN~~~n~~~~~~~~--~-----~~~~v~~e 197 (294)
+.+... +|.+.+++|.+... =.+. .+ .+.+.|+.+.+.. +++.. . .-..|.+|
T Consensus 169 iks~~~-------ni~v~n~~~~~ghG--isiGS~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iKt~~~~~G~v~nI~f~ 238 (326)
T PF00295_consen 169 IKSGSG-------NILVENCTCSGGHG--ISIGSEGSGGSQNDIRNVTFENCTIINTD-NGIRIKTWPGGGGYVSNITFE 238 (326)
T ss_dssp ESSEEC-------EEEEESEEEESSSE--EEEEEESSSSE--EEEEEEEEEEEEESES-EEEEEEEETTTSEEEEEEEEE
T ss_pred cccccc-------ceEEEeEEEecccc--ceeeeccCCccccEEEeEEEEEEEeeccc-eEEEEEEecccceEEeceEEE
Confidence 765421 78999998876544 1221 11 3456666665543 44422 1 11355566
Q ss_pred ceEEEcCC
Q 022635 198 CNIYEAGQ 205 (294)
Q Consensus 198 ~N~f~~g~ 205 (294)
+...++..
T Consensus 239 ni~~~~v~ 246 (326)
T PF00295_consen 239 NITMENVK 246 (326)
T ss_dssp EEEEEEES
T ss_pred EEEecCCc
Confidence 65555544
No 28
>PLN02155 polygalacturonase
Probab=97.60 E-value=0.0033 Score=61.38 Aligned_cols=109 Identities=14% Similarity=0.191 Sum_probs=79.5
Q ss_pred EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeec-----CCCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635 60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLR-----DYDDGLIDITRQSTDITVSRCYFTQHDKTML 134 (294)
Q Consensus 60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s-----~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l 134 (294)
|.+..++||.|++|+++... .=.|.+. .+++|.|+|.++. ...|| ||+ ..+++|+|++|.|...+-+..
T Consensus 148 i~~~~~~nv~i~gitl~nSp---~w~i~~~-~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIa 221 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNSQ---VSHMTLN-GCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVA 221 (394)
T ss_pred eeEEEeeeEEEECeEEEcCC---CeEEEEE-CeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEE
Confidence 56778999999999999754 3456676 8999999999995 35698 788 479999999999999888888
Q ss_pred ecCCCCCCCCcceEEEEEceeecCC-------CCCcce-eecCeEEEEcceEeCc
Q 022635 135 IGADPSHVGDRCIRVTIHHCLFDGT-------RQRHPR-LRFGKVHLYNNYTRNW 181 (294)
Q Consensus 135 iG~~d~~~~d~~~~vT~hhN~f~~~-------~~R~P~-~r~g~~h~~NN~~~n~ 181 (294)
++.... +|++.++.+... ..+.+. -..-.+.+.|+.+.+.
T Consensus 222 ik~gs~-------nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t 269 (394)
T PLN02155 222 IGPGTR-------NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGS 269 (394)
T ss_pred cCCCCc-------eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCC
Confidence 876421 677777666432 222231 1123567888887764
No 29
>PLN02432 putative pectinesterase
Probab=97.55 E-value=0.0044 Score=58.22 Aligned_cols=113 Identities=14% Similarity=0.250 Sum_probs=77.6
Q ss_pred CchHHHHhhcC----CCeEEEEEeceEEEeCceeEe---ccCeEEEeeccceEEE----c------CCEEEeeeccEEEE
Q 022635 9 PGSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT----G------KGLRLKECEHVIIC 71 (294)
Q Consensus 9 ~GsLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i~----g------~gl~i~~~~NVIir 71 (294)
--++++||++. ..+.++|-..|+.+ ++|.| .+++||.|.+..-++. + ..+.+. +++++.+
T Consensus 23 f~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v~-a~~f~a~ 99 (293)
T PLN02432 23 FRKIQDAIDAVPSNNSQLVFIWVKPGIYR--EKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSVL-ASDFVGR 99 (293)
T ss_pred ccCHHHHHhhccccCCceEEEEEeCceeE--EEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEEE-CCCeEEE
Confidence 34788999762 22455555689987 88888 3799999997654443 1 125554 8999999
Q ss_pred eeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635 72 NLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 127 (294)
Q Consensus 72 nl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~ 127 (294)
||+|++..+...-++.|.-.++++-+.+|.|....|=|++- ...--+.+|.|.
T Consensus 100 nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~ 152 (293)
T PLN02432 100 FLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIE 152 (293)
T ss_pred eeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEE
Confidence 99999865433445544435799999999999888887642 234455566665
No 30
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.53 E-value=0.013 Score=59.20 Aligned_cols=102 Identities=22% Similarity=0.399 Sum_probs=70.6
Q ss_pred CCCCc---hHHHHhhcC-----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c-----CC--------E
Q 022635 6 DDGPG---SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-----KG--------L 60 (294)
Q Consensus 6 dsg~G---sLr~a~~~~-----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g-----~g--------l 60 (294)
.+|.| ++++||++. ..|++++-..|+.+ +.+.|. +|+||+|.|.+-++. + .+ +
T Consensus 231 ~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv 308 (529)
T PLN02170 231 ADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATV 308 (529)
T ss_pred CCCCCchhhHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEE
Confidence 45655 788999742 23667776789988 888883 799999998765553 2 11 4
Q ss_pred EEeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 61 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 61 ~i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
.+. +++++.|||+|++..+. ..-|+.+.-.++++.+.+|.|....|=+.
T Consensus 309 ~v~-~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy 358 (529)
T PLN02170 309 AAM-GDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLY 358 (529)
T ss_pred EEE-cCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcce
Confidence 444 89999999999986432 22334343247899999999987655543
No 31
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.50 E-value=0.0073 Score=59.21 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=90.9
Q ss_pred EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC-----CCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635 60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 134 (294)
Q Consensus 60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~-----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l 134 (294)
|.+..++||.|++|+|+.... =.+.+. .+++|.|++.++.. ..|| ||+ ..+++|+|.+|.|...+-+.-
T Consensus 158 i~f~~~~nv~i~gitl~nSp~---w~i~~~-~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIa 231 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNSKF---FHIALV-ECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCIS 231 (404)
T ss_pred EEEEeeeeEEEeCeEEEcCCC---eEEEEE-ccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEE
Confidence 466689999999999998643 456776 89999999999864 5799 899 479999999999999888888
Q ss_pred ecCCCCCCCCcceEEEEEceeecCCCC-------Ccce-eecCeEEEEcceEeCccceeEEe---------cCCceEEEE
Q 022635 135 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPR-LRFGKVHLYNNYTRNWGIYAVCA---------SVESQIYSQ 197 (294)
Q Consensus 135 iG~~d~~~~d~~~~vT~hhN~f~~~~~-------R~P~-~r~g~~h~~NN~~~n~~~~~~~~---------~~~~~v~~e 197 (294)
++.... +|++-++.+....+ +... -....+.+.|+.+.+.. +++.. +.-..|.++
T Consensus 232 iksg~~-------nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ 303 (404)
T PLN02188 232 IGQGNS-------QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE 303 (404)
T ss_pred EccCCc-------cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence 864321 57777766643221 1110 01124678888877653 23321 111366677
Q ss_pred ceEEEcCCcc
Q 022635 198 CNIYEAGQKK 207 (294)
Q Consensus 198 ~N~f~~g~~~ 207 (294)
+-.+++...+
T Consensus 304 ni~m~~v~~p 313 (404)
T PLN02188 304 NIVMNNVTNP 313 (404)
T ss_pred eEEecCccce
Confidence 7777766544
No 32
>PLN02176 putative pectinesterase
Probab=97.41 E-value=0.009 Score=57.23 Aligned_cols=117 Identities=13% Similarity=0.225 Sum_probs=77.9
Q ss_pred CCCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE--cC--------CEEEee
Q 022635 5 IDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT--GK--------GLRLKE 64 (294)
Q Consensus 5 ~dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~--g~--------gl~i~~ 64 (294)
+.+|.| |+++||++- ..+++++-..|+.+ ++|.|. +++||.|.|.+-++. +. .+.+.
T Consensus 44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v~- 120 (340)
T PLN02176 44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTSY- 120 (340)
T ss_pred CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEEE-
Confidence 345555 899999762 23555555689999 888884 689999998655543 11 25664
Q ss_pred eccEEEEeeEEEcCCC-------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635 65 CEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 127 (294)
Q Consensus 65 ~~NVIirnl~i~~~~~-------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~ 127 (294)
+++++.+||+|++..+ ...-|+.+.-.++++-+.+|.|....|=|++- ...--+.+|.|.
T Consensus 121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIe 187 (340)
T PLN02176 121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVIS 187 (340)
T ss_pred CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEE
Confidence 8999999999997532 11234434334789999999998877776642 233444455554
No 33
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.37 E-value=0.0031 Score=62.08 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=59.3
Q ss_pred cCeEEEee-----ccceEEEcCCEEEeeeccEEEEeeEEEcCCC-------------------CCCCceEEcCCCceEEE
Q 022635 42 SYKTIDGR-----GQRIKLTGKGLRLKECEHVIICNLEFEGGRG-------------------HDVDGIQIKPNSRHIWI 97 (294)
Q Consensus 42 sn~TI~G~-----g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~-------------------~~~D~i~i~~~~~~vwI 97 (294)
+++||.|. |....-...+|.+..|+++.|++.+|++... ....+|.+. .++++.|
T Consensus 115 ~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V 193 (455)
T TIGR03808 115 DGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIV 193 (455)
T ss_pred CCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEE
Confidence 56655554 3322222345777889999999999997520 112345554 5668888
Q ss_pred EceeecCCCCCeeEeee-----------------------------------CCccEEEEccEEeecCeeeEec
Q 022635 98 DRCSLRDYDDGLIDITR-----------------------------------QSTDITVSRCYFTQHDKTMLIG 136 (294)
Q Consensus 98 DHcs~s~~~Dg~id~~~-----------------------------------~s~~vTiS~~~f~~h~~~~liG 136 (294)
.+|+++...|+.|.+.+ .+.+++|+.|.++++.+..+.+
T Consensus 194 ~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~ 267 (455)
T TIGR03808 194 ARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRG 267 (455)
T ss_pred ECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEE
Confidence 88888887775443321 2567888888888777444433
No 34
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.34 E-value=0.026 Score=57.36 Aligned_cols=119 Identities=16% Similarity=0.366 Sum_probs=80.2
Q ss_pred CCCc---hHHHHhhcC-C------CeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-------------C
Q 022635 7 DGPG---SLREGCRRR-E------PLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------G 59 (294)
Q Consensus 7 sg~G---sLr~a~~~~-~------P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-------------g 59 (294)
+|.| ++++||.+. . -|.|++-..|+++ +.|.|. +|+||+|.|.+-+|. +. .
T Consensus 230 dGsG~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT 307 (538)
T PLN03043 230 YGTDNFTTITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSST 307 (538)
T ss_pred CCCCCCcCHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceE
Confidence 4544 888999751 1 1567776789998 888883 799999998655443 21 1
Q ss_pred EEEeeeccEEEEeeEEEcCCC-CCCCceEEcCCCceEEEEceeecCCCCCe-----------------eEeeeCCccEEE
Q 022635 60 LRLKECEHVIICNLEFEGGRG-HDVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITV 121 (294)
Q Consensus 60 l~i~~~~NVIirnl~i~~~~~-~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~-----------------id~~~~s~~vTi 121 (294)
+.+. +++++.|||+|++..+ ...-|+.+.-.+...-+.+|.|....|=| +|+.-+.--+-+
T Consensus 308 ~~v~-~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avf 386 (538)
T PLN03043 308 FAVS-GERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIF 386 (538)
T ss_pred EEEE-CCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeee
Confidence 4454 8999999999998643 12234444335788999999997654443 333334456678
Q ss_pred EccEEee
Q 022635 122 SRCYFTQ 128 (294)
Q Consensus 122 S~~~f~~ 128 (294)
++|.|.-
T Consensus 387 q~c~i~~ 393 (538)
T PLN03043 387 QNCNLYA 393 (538)
T ss_pred eccEEEE
Confidence 8888864
No 35
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.31 E-value=0.0044 Score=62.83 Aligned_cols=100 Identities=21% Similarity=0.463 Sum_probs=72.4
Q ss_pred CCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEE-EcC-----C--------EE
Q 022635 6 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------LR 61 (294)
Q Consensus 6 dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~g~-----g--------l~ 61 (294)
.+|.| ++++||++ ...|+|++-..|+.+ +.+.|. +|+||+|.|.+.++ .+. | |.
T Consensus 236 ~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~ 313 (541)
T PLN02416 236 ADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLA 313 (541)
T ss_pred CCCCCCccCHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEE
Confidence 45666 78889975 335677777789998 788883 79999999865544 321 1 55
Q ss_pred EeeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 62 LKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 62 i~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
+. +++++.|||+|++..+ ...-|+.+ .++++-+-+|.|....|=|+
T Consensus 314 v~-~~~F~a~nitf~Ntag~~~~QAVAl~v--~~D~~~fy~c~~~G~QDTLy 362 (541)
T PLN02416 314 VS-GEGFLARDITIENTAGPEKHQAVALRV--NADLVALYRCTINGYQDTLY 362 (541)
T ss_pred EE-CCCeEEEeeEEEECCCCCCCceEEEEE--cCccEEEEcceEecccchhc
Confidence 54 8999999999997643 23445555 47899999999987766654
No 36
>PLN02665 pectinesterase family protein
Probab=97.30 E-value=0.036 Score=53.64 Aligned_cols=100 Identities=16% Similarity=0.280 Sum_probs=70.4
Q ss_pred CCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceE-EEcC------------CEEEe
Q 022635 7 DGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK------------GLRLK 63 (294)
Q Consensus 7 sg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~g~------------gl~i~ 63 (294)
+|.| ++++||++- ..|++++-..|+.+ +++.|. +++||.|++...+ |... .+.+.
T Consensus 75 dG~Gdf~TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v~ 152 (366)
T PLN02665 75 DGSGDFKTITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIVE 152 (366)
T ss_pred CCCCCccCHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEEE
Confidence 4555 899999762 23566665679998 888884 7899999965433 3211 14554
Q ss_pred eeccEEEEeeEEEcCCC--------CCCCceEEcCCCceEEEEceeecCCCCCeeE
Q 022635 64 ECEHVIICNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID 111 (294)
Q Consensus 64 ~~~NVIirnl~i~~~~~--------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id 111 (294)
+++++.+||+|++..+ ...-|+.+ .++++-+.+|.|....|=|++
T Consensus 153 -a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v--~gDka~f~~C~f~G~QDTL~~ 205 (366)
T PLN02665 153 -SDYFMAANIIIKNSAPRPDGKRKGAQAVAMRI--SGDKAAFYNCRFIGFQDTLCD 205 (366)
T ss_pred -CCCeEEEeeEEEeCCCCcCCCCCCcceEEEEE--cCCcEEEEcceeccccceeEe
Confidence 8999999999998532 12344444 478999999999887777764
No 37
>PLN02682 pectinesterase family protein
Probab=97.29 E-value=0.012 Score=56.80 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=73.7
Q ss_pred hHHHHhhcC----CCeEEEEEeceEEEeCceeEe---ccCeEEEeeccceEEE-c----------C---------CEEEe
Q 022635 11 SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-G----------K---------GLRLK 63 (294)
Q Consensus 11 sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i~-g----------~---------gl~i~ 63 (294)
++++||++- ..+.+++-..|+.+ +++.| .+++||.|.|..-++. . + .+.+.
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y~--EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v~ 161 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTYR--EKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAVN 161 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCceee--EEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEEE
Confidence 899999762 22455555679988 88888 3799999997644432 1 0 14554
Q ss_pred eeccEEEEeeEEEcCCC------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635 64 ECEHVIICNLEFEGGRG------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 127 (294)
Q Consensus 64 ~~~NVIirnl~i~~~~~------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~ 127 (294)
+++++.+||+|++..+ .+.-|+.+.-.++++-+.+|.|....|=|++- ...--+.+|.|.
T Consensus 162 -a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie 227 (369)
T PLN02682 162 -SPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCYIE 227 (369)
T ss_pred -CCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeEEc
Confidence 8999999999998532 11223434335799999999998888777642 233445555554
No 38
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.028 Score=53.47 Aligned_cols=93 Identities=18% Similarity=0.246 Sum_probs=69.1
Q ss_pred ceEEEeCceeEeccCeEEEeeccceEEEcCC----EEEeeeccEEEEeeEEEcCC---CCCCCceEEcCCCceEEEEcee
Q 022635 29 SGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG----LRLKECEHVIICNLEFEGGR---GHDVDGIQIKPNSRHIWIDRCS 101 (294)
Q Consensus 29 ~G~I~l~~~l~v~sn~TI~G~g~g~~i~g~g----l~i~~~~NVIirnl~i~~~~---~~~~D~i~i~~~~~~vwIDHcs 101 (294)
+|... +.+.|..-+|+.|. .++++.|.+ +++. +.++|||.|++|+.. ...+.+|-+...++..-|.||+
T Consensus 40 ~g~~~--g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~ 115 (408)
T COG3420 40 SGRYA--GNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHND 115 (408)
T ss_pred eeeec--ccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEccc
Confidence 35544 56888888899897 566787654 6775 999999999999653 2445677665577888899999
Q ss_pred ecCCCCCeeEeeeCCccEEEEccEEe
Q 022635 102 LRDYDDGLIDITRQSTDITVSRCYFT 127 (294)
Q Consensus 102 ~s~~~Dg~id~~~~s~~vTiS~~~f~ 127 (294)
+..+.-|. -+ .++..+-|--|.+.
T Consensus 116 l~~n~~Gi-~l-~~s~d~~i~~n~i~ 139 (408)
T COG3420 116 LIGNSFGI-YL-HGSADVRIEGNTIQ 139 (408)
T ss_pred ccccceEE-EE-eccCceEEEeeEEe
Confidence 98888884 44 46777777777775
No 39
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.25 E-value=0.038 Score=57.32 Aligned_cols=148 Identities=20% Similarity=0.386 Sum_probs=94.6
Q ss_pred CCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-----C--------EE
Q 022635 6 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------LR 61 (294)
Q Consensus 6 dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-----g--------l~ 61 (294)
.+|.| ++++||++ ...|.|++-..|+++ +.+.|. .++|++|.|.+-++. +. | |.
T Consensus 256 ~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~ 333 (670)
T PLN02217 256 QDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIYK--EYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVA 333 (670)
T ss_pred CCCCCCccCHHHHHHhccccCCceEEEEEeCCceE--EEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEE
Confidence 45665 88999976 223666666689988 888885 589999998655553 21 1 44
Q ss_pred EeeeccEEEEeeEEEcCCC-CCCCceEEcCCCceEEEEceeecCCCC-----------------CeeEeeeCCccEEEEc
Q 022635 62 LKECEHVIICNLEFEGGRG-HDVDGIQIKPNSRHIWIDRCSLRDYDD-----------------GLIDITRQSTDITVSR 123 (294)
Q Consensus 62 i~~~~NVIirnl~i~~~~~-~~~D~i~i~~~~~~vwIDHcs~s~~~D-----------------g~id~~~~s~~vTiS~ 123 (294)
+. +++++.|||+|++..+ ...-++-+.-.+++.-+.+|.|....| |.+|+.-+.-..-+++
T Consensus 334 v~-g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~ 412 (670)
T PLN02217 334 IV-GDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQN 412 (670)
T ss_pred EE-CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEEc
Confidence 44 8999999999998643 222344443357899999999975443 3344444555677888
Q ss_pred cEEeecC-----eeeEe--cCCCCCCCCcceEEEEEceeecCC
Q 022635 124 CYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGT 159 (294)
Q Consensus 124 ~~f~~h~-----~~~li--G~~d~~~~d~~~~vT~hhN~f~~~ 159 (294)
|.|.-.. ++.+- |..+. +...-+.||+|.+...
T Consensus 413 C~I~~r~~~~~~~~~ITAqgr~~~---~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 413 CTLLVRKPLLNQACPITAHGRKDP---RESTGFVLQGCTIVGE 452 (670)
T ss_pred cEEEEccCCCCCceeEecCCCCCC---CCCceEEEEeeEEecC
Confidence 8886431 12111 21111 1123689999988664
No 40
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.23 E-value=0.026 Score=57.32 Aligned_cols=102 Identities=20% Similarity=0.405 Sum_probs=71.7
Q ss_pred CCCCc---hHHHHhhcC------CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-----C--------
Q 022635 6 DDGPG---SLREGCRRR------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G-------- 59 (294)
Q Consensus 6 dsg~G---sLr~a~~~~------~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-----g-------- 59 (294)
.+|.| +.++||++. ..|++++-..|+.+ +.+.|. +|+|+.|.|.+-++. +. +
T Consensus 229 ~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT 306 (539)
T PLN02995 229 KDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSAT 306 (539)
T ss_pred CCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEE
Confidence 45666 899999762 12566665689998 778884 699999998655543 21 1
Q ss_pred EEEeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 60 LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 60 l~i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
+.+. +++++.|||+|++..+. ..-|+.+.-.+++..+.+|.|....|=|.
T Consensus 307 ~~v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy 357 (539)
T PLN02995 307 AGIE-GLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLM 357 (539)
T ss_pred EEEE-CCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhc
Confidence 3444 89999999999986432 23444443357999999999987766654
No 41
>PLN02773 pectinesterase
Probab=97.21 E-value=0.019 Score=54.57 Aligned_cols=112 Identities=14% Similarity=0.199 Sum_probs=73.5
Q ss_pred chHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEEc------------------C------
Q 022635 10 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLTG------------------K------ 58 (294)
Q Consensus 10 GsLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~g------------------~------ 58 (294)
-|+++||++. ..++++|-..|+.. +.|.|. +++||.|++..-++.- .
T Consensus 18 ~TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~Sa 95 (317)
T PLN02773 18 CTVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCG 95 (317)
T ss_pred cCHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCce
Confidence 4789999762 22555555689988 888883 5899999975433321 0
Q ss_pred CEEEeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635 59 GLRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 127 (294)
Q Consensus 59 gl~i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~ 127 (294)
.+.+ .+++++.+||+|++..+. ..-|+.|.-.++++-+.+|.|....|=|+.- ...--+.+|.|.
T Consensus 96 Tv~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~---~gr~yf~~c~Ie 161 (317)
T PLN02773 96 TVIV-EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH---YGKQYLRDCYIE 161 (317)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeC---CCCEEEEeeEEe
Confidence 1344 489999999999986431 2233444335789999999998877776542 223444555554
No 42
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.20 E-value=0.022 Score=57.07 Aligned_cols=101 Identities=19% Similarity=0.385 Sum_probs=70.5
Q ss_pred CCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-----C--------EEE
Q 022635 7 DGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------LRL 62 (294)
Q Consensus 7 sg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-----g--------l~i 62 (294)
+|.| ++++||.+. ..|.+++-..|+.+ +.+.|. +|+||+|.|.+-+|. +. + +.+
T Consensus 204 dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v 281 (509)
T PLN02488 204 DGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS 281 (509)
T ss_pred CCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE
Confidence 4555 788999762 23566666789998 888884 699999998765553 21 1 344
Q ss_pred eeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 63 KECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 63 ~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
.+++++.|||+|++..+. ..-|+.+.-.++..-+-+|.|....|=|.
T Consensus 282 -~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy 329 (509)
T PLN02488 282 -NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALY 329 (509)
T ss_pred -EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCccee
Confidence 389999999999986432 23445454357999999999987655543
No 43
>PLN02304 probable pectinesterase
Probab=97.18 E-value=0.024 Score=54.97 Aligned_cols=115 Identities=15% Similarity=0.180 Sum_probs=78.7
Q ss_pred CCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEe---ccCeEEEeeccceEEE-c-------------CCEEE
Q 022635 7 DGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-G-------------KGLRL 62 (294)
Q Consensus 7 sg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i~-g-------------~gl~i 62 (294)
+|.| ++++||++- ..+++|+-..|+.+ ++|.| .+++||.|+|..-++. . ..+.+
T Consensus 82 dGsGdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v 159 (379)
T PLN02304 82 NGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV 159 (379)
T ss_pred CCCCCccCHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE
Confidence 4554 899999762 23566666789988 88888 3799999997654442 1 11444
Q ss_pred eeeccEEEEeeEEEcCCC------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635 63 KECEHVIICNLEFEGGRG------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 127 (294)
Q Consensus 63 ~~~~NVIirnl~i~~~~~------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~ 127 (294)
. +++++.|||+|++... ...-|+.+.-.+.++-+.+|.|....|=|++- ...--+.+|.|.
T Consensus 160 ~-a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIe 226 (379)
T PLN02304 160 F-ASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQ 226 (379)
T ss_pred E-CCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEc
Confidence 4 8999999999997531 11224444335789999999999998887753 233445666665
No 44
>smart00656 Amb_all Amb_all domain.
Probab=97.14 E-value=0.021 Score=50.31 Aligned_cols=131 Identities=17% Similarity=0.155 Sum_probs=81.4
Q ss_pred cCeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCC-----CCCCCc-eEEcCCCceEEEEceeecCCCCCeeEeeeC
Q 022635 42 SYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR-----GHDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITRQ 115 (294)
Q Consensus 42 sn~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~-----~~~~D~-i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~ 115 (294)
.|++|.+........+.+|.+..++||+|.|.+|..+. ....|+ +.+..++.+|-|-.|.|....-+.|--..+
T Consensus 45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d 124 (190)
T smart00656 45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD 124 (190)
T ss_pred eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence 36666664332112345688888999999999999752 111344 445436788888888887654444322211
Q ss_pred C------ccEEEEccEEeecC-eeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeec-CeEEEEcceEeCc
Q 022635 116 S------TDITVSRCYFTQHD-KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNW 181 (294)
Q Consensus 116 s------~~vTiS~~~f~~h~-~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g~~h~~NN~~~n~ 181 (294)
. -.||+.+|+|.+.. +.-++.. -.+=+.+|+|.+.....-..+. +.+.+.||||.+.
T Consensus 125 ~~~~~~~~~vT~h~N~~~~~~~R~P~~r~---------g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 125 SDTDDGKMRVTIAHNYFGNLRQRAPRVRF---------GYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CccccccceEEEECcEEcCcccCCCcccC---------CEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 1 26999999998532 1111111 1567778999887654333332 5789999999863
No 45
>PLN02497 probable pectinesterase
Probab=97.12 E-value=0.023 Score=54.23 Aligned_cols=117 Identities=12% Similarity=0.224 Sum_probs=77.8
Q ss_pred CCCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEE-Ec---------CCEEEee
Q 022635 5 IDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TG---------KGLRLKE 64 (294)
Q Consensus 5 ~dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~g---------~gl~i~~ 64 (294)
+.+|.| |+++||++ ...+++++-..|+.+ +++.|. +++||.|+|..-++ .. ..|.+.
T Consensus 37 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~G~Y~--EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v~- 113 (331)
T PLN02497 37 DQSGHGNFTTIQSAIDSVPSNNKHWFCINVKAGLYR--EKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFSTL- 113 (331)
T ss_pred CCCCCCCccCHHHHHhhccccCCceEEEEEeCcEEE--EEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEEe-
Confidence 345655 89999976 223555555689998 888883 79999999754333 21 125554
Q ss_pred eccEEEEeeEEEcCCCC--------CCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635 65 CEHVIICNLEFEGGRGH--------DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 127 (294)
Q Consensus 65 ~~NVIirnl~i~~~~~~--------~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~ 127 (294)
+++++.+||+|++..+. ..-++.+.-.++++-+.+|.|....|=|++- ...--+.+|.|.
T Consensus 114 a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie 181 (331)
T PLN02497 114 ADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQ 181 (331)
T ss_pred cCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEE
Confidence 89999999999976421 1124444335789999999999888887642 233445555554
No 46
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.12 E-value=0.048 Score=55.70 Aligned_cols=121 Identities=16% Similarity=0.405 Sum_probs=79.8
Q ss_pred CCCCCc---hHHHHhhcC-C------CeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC------------
Q 022635 5 IDDGPG---SLREGCRRR-E------PLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK------------ 58 (294)
Q Consensus 5 ~dsg~G---sLr~a~~~~-~------P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~------------ 58 (294)
+.+|.| +.++||++. . .++|++-..|+++ +.+.|. +++||+|.|.+-++. +.
T Consensus 255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S 332 (566)
T PLN02713 255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS 332 (566)
T ss_pred CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence 345655 788999762 1 2456665689998 888883 689999998654443 21
Q ss_pred -CEEEeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee-----------------EeeeCCccE
Q 022635 59 -GLRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDI 119 (294)
Q Consensus 59 -gl~i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i-----------------d~~~~s~~v 119 (294)
.|.+. +++++.|||+|++..+. ..-|+.+.-.++..-+.+|.|....|=|. |+.-+.-.+
T Consensus 333 aT~~v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a 411 (566)
T PLN02713 333 ATFAVV-GQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV 411 (566)
T ss_pred eeEEEE-CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence 14554 89999999999986432 22344443357899999999986655543 333344456
Q ss_pred EEEccEEee
Q 022635 120 TVSRCYFTQ 128 (294)
Q Consensus 120 TiS~~~f~~ 128 (294)
-+++|.|..
T Consensus 412 vfq~C~i~~ 420 (566)
T PLN02713 412 VFQNCNLYP 420 (566)
T ss_pred EEeccEEEE
Confidence 677777753
No 47
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.06 E-value=0.034 Score=56.87 Aligned_cols=102 Identities=19% Similarity=0.374 Sum_probs=70.0
Q ss_pred CCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c------C--C------E
Q 022635 6 DDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G------K--G------L 60 (294)
Q Consensus 6 dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g------~--g------l 60 (294)
.+|.| ++++||++. ..|.+++-..|+++ +.+.|. +|+||.|.|.+-++. + + + +
T Consensus 265 ~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~ 342 (572)
T PLN02990 265 QDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATV 342 (572)
T ss_pred CCCCCCCcCHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEE
Confidence 45666 899999762 23566666789998 788884 689999998654443 1 1 1 3
Q ss_pred EEeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 61 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 61 ~i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
.+. +++++.|||+|++..+. ..-|+.+.-.+++.-+.+|.|....|=|.
T Consensus 343 ~v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy 392 (572)
T PLN02990 343 AIN-GDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLY 392 (572)
T ss_pred EEE-cCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhc
Confidence 443 89999999999986431 23344443357899999999976555443
No 48
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.04 E-value=0.0097 Score=60.43 Aligned_cols=102 Identities=18% Similarity=0.405 Sum_probs=71.2
Q ss_pred CCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-------C------EE
Q 022635 6 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------G------LR 61 (294)
Q Consensus 6 dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-------g------l~ 61 (294)
.+|.| ++++||.+ ...|.|+|-..|+.+ +.+.|. +|+||.|.|.+.++. +. + +.
T Consensus 242 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~ 319 (548)
T PLN02301 242 KDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYK--ENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVA 319 (548)
T ss_pred CCCCCCcccHHHHHHhhhhcCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEE
Confidence 35666 88899976 223667776799998 788884 699999998655553 21 1 33
Q ss_pred EeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 62 LKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 62 i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
+ .+++++.|||+|++..+. ..-++.+.-.+++.-+.+|.|....|=|.
T Consensus 320 v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy 368 (548)
T PLN02301 320 A-VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLY 368 (548)
T ss_pred E-ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccce
Confidence 4 489999999999986432 12334333247899999999987666554
No 49
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.01 E-value=0.01 Score=60.44 Aligned_cols=100 Identities=17% Similarity=0.309 Sum_probs=70.3
Q ss_pred CCCc---hHHHHhhcC-----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c------CC--------E
Q 022635 7 DGPG---SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G------KG--------L 60 (294)
Q Consensus 7 sg~G---sLr~a~~~~-----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g------~g--------l 60 (294)
+|.| ++++||++. ..|.||+-..|+.+ +.+.|. .|+||+|.|.+-++. + .| |
T Consensus 248 dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~ 325 (553)
T PLN02708 248 DGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATV 325 (553)
T ss_pred CCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEE
Confidence 4544 889999662 23667776789998 778773 699999998655553 1 11 4
Q ss_pred EEeeeccEEEEeeEEEcCCCCC-CCceEEcCCCceEEEEceeecCCCCCe
Q 022635 61 RLKECEHVIICNLEFEGGRGHD-VDGIQIKPNSRHIWIDRCSLRDYDDGL 109 (294)
Q Consensus 61 ~i~~~~NVIirnl~i~~~~~~~-~D~i~i~~~~~~vwIDHcs~s~~~Dg~ 109 (294)
.+. +++++.|||+|++..+.+ .-|+.+.-.++++.+.+|.|....|=+
T Consensus 326 ~v~-~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTL 374 (553)
T PLN02708 326 GVL-GDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTL 374 (553)
T ss_pred EEE-cCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccc
Confidence 444 899999999999865422 244444435899999999997655544
No 50
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.00 E-value=0.014 Score=58.90 Aligned_cols=103 Identities=17% Similarity=0.345 Sum_probs=71.0
Q ss_pred CCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c-------C------CEE
Q 022635 6 DDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-------K------GLR 61 (294)
Q Consensus 6 dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g-------~------gl~ 61 (294)
-+|.| ++++||.+. ..+++++-..|+++ +.+.|. +|+||+|.|.+-++. + . .+.
T Consensus 212 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~ 289 (520)
T PLN02201 212 ADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFA 289 (520)
T ss_pred CCCCCCccCHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEE
Confidence 35555 889999762 23566666789998 888884 689999998654443 1 1 144
Q ss_pred EeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCeeE
Q 022635 62 LKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLID 111 (294)
Q Consensus 62 i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id 111 (294)
+. +++++.|||+|++..+. ..-|+.+.-.+++.-+.+|.|....|=+.+
T Consensus 290 v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~ 339 (520)
T PLN02201 290 VS-GRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYT 339 (520)
T ss_pred EE-CCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEe
Confidence 44 89999999999986431 223444433478999999999877776553
No 51
>PLN02197 pectinesterase
Probab=96.95 E-value=0.02 Score=58.68 Aligned_cols=101 Identities=21% Similarity=0.354 Sum_probs=72.0
Q ss_pred CCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c-------CC--------
Q 022635 6 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-------KG-------- 59 (294)
Q Consensus 6 dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g-------~g-------- 59 (294)
.+|.| ++++||++ ...|.|++-..|+++ +.+.|. +|+||.|.|.+-++. + .|
T Consensus 281 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT 358 (588)
T PLN02197 281 KDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIYN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGT 358 (588)
T ss_pred CCCCCCcCCHHHHHHhccccCCceEEEEEeCceEE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeE
Confidence 35655 88999976 223666666789998 888884 689999998654443 1 11
Q ss_pred EEEeeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCeeE
Q 022635 60 LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID 111 (294)
Q Consensus 60 l~i~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id 111 (294)
|.+ .+++++.|||+|++..+ ...-|+.+ .+++.-+.+|.|....|=|++
T Consensus 359 ~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv--~~D~~~fy~C~f~GyQDTLy~ 410 (588)
T PLN02197 359 VQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRV--NGDRAVIFNCRFDGYQDTLYV 410 (588)
T ss_pred EEE-ECCcEEEEEeEEEeCCCCCCCceEEEEe--cCCcEEEEEeEEEecCcceEe
Confidence 344 38999999999998643 23344444 579999999999887777653
No 52
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.013 Score=59.34 Aligned_cols=101 Identities=23% Similarity=0.529 Sum_probs=72.3
Q ss_pred EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEee-----------eCCccEEEEccEEee
Q 022635 60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDIT-----------RQSTDITVSRCYFTQ 128 (294)
Q Consensus 60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~-----------~~s~~vTiS~~~f~~ 128 (294)
+....|+|+.++||+|........|||.++ +|+||.|+.|.|+-+.|- +-++ ..+.+|+|++|+|..
T Consensus 264 ~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD~-I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ 341 (542)
T COG5434 264 VHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDDC-IAIKSGAGLDGKKGYGPSRNIVIRNCYFSS 341 (542)
T ss_pred EeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCce-EEeecccCCcccccccccccEEEecceecc
Confidence 455579999999999997655578999997 999999999999985554 3332 235789999999995
Q ss_pred cCeeeEecCCCCCCCCcceEEEEEceeecCCCCCccee
Q 022635 129 HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL 166 (294)
Q Consensus 129 h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~ 166 (294)
-.-+..+|+.-.. +...|++-.|.|.+ ..|-=|+
T Consensus 342 ghG~~v~Gse~~g---gv~ni~ved~~~~~-~d~GLRi 375 (542)
T COG5434 342 GHGGLVLGSEMGG---GVQNITVEDCVMDN-TDRGLRI 375 (542)
T ss_pred cccceEeeeecCC---ceeEEEEEeeeecc-Ccceeee
Confidence 4444555554211 12467888888777 4555555
No 53
>PLN02314 pectinesterase
Probab=96.92 E-value=0.013 Score=60.15 Aligned_cols=102 Identities=19% Similarity=0.365 Sum_probs=71.0
Q ss_pred CCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEE-EcC-----C--------EE
Q 022635 6 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------LR 61 (294)
Q Consensus 6 dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~g~-----g--------l~ 61 (294)
.+|.| ++++||.+ ...|+|++-..|+++ +.+.|. +|+|+.|.|.+-+| .+. | |.
T Consensus 284 ~dGsg~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~ 361 (586)
T PLN02314 284 KDGSGDVKTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFA 361 (586)
T ss_pred CCCCCCccCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEE
Confidence 35554 88999976 223667776789998 778884 68999999865444 221 1 44
Q ss_pred EeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 62 LKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 62 i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
+ .+++++.|||+|++..+. ..-|+.+.-.+...-+.+|.|....|=|.
T Consensus 362 v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy 410 (586)
T PLN02314 362 A-AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLY 410 (586)
T ss_pred E-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchhe
Confidence 4 489999999999986432 22344444357899999999987666543
No 54
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.90 E-value=0.027 Score=53.08 Aligned_cols=120 Identities=16% Similarity=0.350 Sum_probs=72.9
Q ss_pred chHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceE-EEcC-------------CEEEeeeccE
Q 022635 10 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-------------GLRLKECEHV 68 (294)
Q Consensus 10 GsLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~g~-------------gl~i~~~~NV 68 (294)
-++++||++ ...+++||-..|+.+ ++|.|. +++||+|.|..-+ |.+. .|.+. ++++
T Consensus 13 ~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~-a~~f 89 (298)
T PF01095_consen 13 TTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVN-ADDF 89 (298)
T ss_dssp SSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-
T ss_pred cCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccccc-ccce
Confidence 478999976 223566666799999 888885 5999999976444 4331 15665 8999
Q ss_pred EEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCC
Q 022635 69 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 138 (294)
Q Consensus 69 Iirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~ 138 (294)
+++||+|++..+ ...-||.+ .++++.+.+|.|....|=|+.- ....-+.+|.|.. .--+++|..
T Consensus 90 ~~~nit~~Nt~g~~~~qAvAl~~--~~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG-~vDFIfG~~ 156 (298)
T PF01095_consen 90 TAENITFENTAGPSGGQAVALRV--SGDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEG-NVDFIFGNG 156 (298)
T ss_dssp EEEEEEEEEHCSGSG----SEEE--T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEE-SEEEEEESS
T ss_pred eeeeeEEecCCCCcccceeeeee--cCCcEEEEEeEEccccceeeec---cceeEEEeeEEEe-cCcEEECCe
Confidence 999999997532 23456666 4688999999999888976542 3455667777763 223556643
No 55
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.89 E-value=0.019 Score=57.98 Aligned_cols=102 Identities=20% Similarity=0.354 Sum_probs=70.6
Q ss_pred CCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-------------CEE
Q 022635 6 DDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------GLR 61 (294)
Q Consensus 6 dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-------------gl~ 61 (294)
-+|.| ++++||++. ..|++++-..|+.. +.+.|. +++||.|.|.+-++. +. .+.
T Consensus 224 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~ 301 (530)
T PLN02933 224 IDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVG 301 (530)
T ss_pred CCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEE
Confidence 34555 888999762 23566666689999 888884 689999997654443 11 144
Q ss_pred EeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 62 LKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 62 i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
+. +++++.|||+|++..+. ..-|+.+.-.++++-+.+|.|....|=|+
T Consensus 302 v~-a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy 350 (530)
T PLN02933 302 VK-GKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLY 350 (530)
T ss_pred EE-CCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccc
Confidence 44 89999999999986432 22344443357899999999987666654
No 56
>PLN02634 probable pectinesterase
Probab=96.85 E-value=0.071 Score=51.47 Aligned_cols=114 Identities=17% Similarity=0.281 Sum_probs=76.2
Q ss_pred CCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE------------c------
Q 022635 6 DDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT------------G------ 57 (294)
Q Consensus 6 dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~------------g------ 57 (294)
.+|.| |+++||++- ..+.+++-..|+.+ ++|.|. +++||.|.|...++. |
T Consensus 62 ~dGsGdf~TIQaAIda~P~~~~~r~vI~Ik~GvY~--EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~ 139 (359)
T PLN02634 62 ANGHGDFRSVQDAVDSVPKNNTMSVTIKINAGFYR--EKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTY 139 (359)
T ss_pred CCCCCCccCHHHHHhhCcccCCccEEEEEeCceEE--EEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccc
Confidence 35555 889999762 22455555689988 888883 789999998665553 1
Q ss_pred --CCEEEeeeccEEEEeeEEEcCCC--------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635 58 --KGLRLKECEHVIICNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 127 (294)
Q Consensus 58 --~gl~i~~~~NVIirnl~i~~~~~--------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~ 127 (294)
..+.+. +++++.+||+|++..+ ...-|+.+ .++++-+.+|.|....|=|++- ...--+.+|.|.
T Consensus 140 ~SaTv~V~-a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v--~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~CyIe 213 (359)
T PLN02634 140 QTASVTVY-ANYFTARNISFKNTAPAPMPGMQGWQAVAFRI--SGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECYIE 213 (359)
T ss_pred cceEEEEE-CCCeEEEeCeEEeCCccCCCCCCCCceEEEEe--cCCcEEEEEeEEecccceeeeC---CCCEEEEeeEEc
Confidence 014444 8999999999997532 12334444 4788999999999887777642 233444455554
No 57
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.82 E-value=0.049 Score=55.97 Aligned_cols=99 Identities=21% Similarity=0.412 Sum_probs=70.6
Q ss_pred CCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-----C--------EEE
Q 022635 7 DGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------LRL 62 (294)
Q Consensus 7 sg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-----g--------l~i 62 (294)
+|.| ++++||.+. ..|++++-..|+++ +.+.|. +|+||.|.|.+-++. +. + |.+
T Consensus 292 dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v 369 (596)
T PLN02745 292 DGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA 369 (596)
T ss_pred CCCCCcccHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE
Confidence 4555 889999762 23566665689998 778884 689999998654443 21 1 444
Q ss_pred eeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 63 KECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 63 ~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
.+++++.|||+|++..+ ...-|+.+ .+++..+.+|.|....|=|.
T Consensus 370 -~~~~F~a~nitf~Ntag~~~~QAVAl~v--~~Dr~~f~~c~~~G~QDTLy 417 (596)
T PLN02745 370 -LGEGFMAKSMGFRNTAGPEKHQAVAIRV--QSDRSIFLNCRFEGYQDTLY 417 (596)
T ss_pred -EcCCEEEEeeEEEECCCCCCCceEEEEE--cCCcEEEEeeEEeecccccc
Confidence 48999999999998643 23344444 57999999999987776654
No 58
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.81 E-value=0.02 Score=58.67 Aligned_cols=118 Identities=16% Similarity=0.339 Sum_probs=78.9
Q ss_pred CCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-------------CEE
Q 022635 6 DDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------GLR 61 (294)
Q Consensus 6 dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-------------gl~ 61 (294)
.+|.| ++++||.+. ..|.|++-..|+++ +.+.|. +|++|+|.|.+-+|. +. .+.
T Consensus 281 ~dGsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~ 358 (587)
T PLN02313 281 ADGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVA 358 (587)
T ss_pred CCCCCCCccHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEE
Confidence 35555 788899762 23666666789988 788884 689999998655543 21 133
Q ss_pred EeeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCe-----------------eEeeeCCccEEE
Q 022635 62 LKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITV 121 (294)
Q Consensus 62 i~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~-----------------id~~~~s~~vTi 121 (294)
+ .+++++.|||+|++..+ ...-|+.+ .+++.-+-+|.|....|=| +|+.-+.-.+-+
T Consensus 359 v-~~~~F~a~~itf~Ntag~~~~QAvAlrv--~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avf 435 (587)
T PLN02313 359 A-VGERFLARDITFQNTAGPSKHQAVALRV--GSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVL 435 (587)
T ss_pred E-ECCCeEEEeeEEEeCCCCCCCceEEEEe--cCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEE
Confidence 4 37999999999998643 22344444 5789999999997654443 333334445566
Q ss_pred EccEEee
Q 022635 122 SRCYFTQ 128 (294)
Q Consensus 122 S~~~f~~ 128 (294)
++|.|.-
T Consensus 436 q~c~i~~ 442 (587)
T PLN02313 436 QDCDINA 442 (587)
T ss_pred EccEEEE
Confidence 7776653
No 59
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.81 E-value=0.018 Score=58.34 Aligned_cols=96 Identities=20% Similarity=0.410 Sum_probs=69.0
Q ss_pred chHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEE-EcC-----C--------EEEeeeccE
Q 022635 10 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------LRLKECEHV 68 (294)
Q Consensus 10 GsLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~g~-----g--------l~i~~~~NV 68 (294)
-++++||.+ +..|.|||-..|+.+ +.+.|. +++||+|.|.+-++ .+. | +.+ .++++
T Consensus 245 ~TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F 321 (537)
T PLN02506 245 RTITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGF 321 (537)
T ss_pred cCHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCe
Confidence 478889976 234677777789998 778884 79999999765444 321 1 344 48999
Q ss_pred EEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 69 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 69 Iirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
+.|||+|++..+ ...-|+.+ .++++-+.+|.|....|=++
T Consensus 322 ~a~nit~~Ntag~~~~QAVAl~v--~~D~~~fy~C~~~G~QDTLy 364 (537)
T PLN02506 322 IARDITFRNTAGPQNHQAVALRV--DSDQSAFYRCSMEGYQDTLY 364 (537)
T ss_pred EEEeeEEEeCCCCCCCceEEEEe--cCCcEEEEcceeecccccce
Confidence 999999998643 23444544 57999999999987766654
No 60
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.80 E-value=0.019 Score=58.54 Aligned_cols=101 Identities=17% Similarity=0.326 Sum_probs=69.7
Q ss_pred CCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE--------cC------CEEE
Q 022635 7 DGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT--------GK------GLRL 62 (294)
Q Consensus 7 sg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~--------g~------gl~i 62 (294)
+|.| +.++||.+ ...|.|++-..|+++ +.+.|. +|+||+|.|.+-+|. |. .+.+
T Consensus 265 dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v 342 (565)
T PLN02468 265 DGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV 342 (565)
T ss_pred CCCCCccCHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE
Confidence 5655 78889966 223666666789998 788884 689999998654443 11 1444
Q ss_pred eeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 63 KECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 63 ~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
. +++++.|||+|++..+. ..-|+.+.-.+.+.-+.+|.|....|=|.
T Consensus 343 ~-~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy 390 (565)
T PLN02468 343 F-GKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLY 390 (565)
T ss_pred E-CCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhc
Confidence 4 79999999999976432 22344443357899999999987666543
No 61
>PLN02916 pectinesterase family protein
Probab=96.79 E-value=0.056 Score=54.32 Aligned_cols=96 Identities=16% Similarity=0.303 Sum_probs=68.5
Q ss_pred chHHHHhhcC-------CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c-------C------CEEEeee
Q 022635 10 GSLREGCRRR-------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-------K------GLRLKEC 65 (294)
Q Consensus 10 GsLr~a~~~~-------~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g-------~------gl~i~~~ 65 (294)
-++++||.+. ..|++++-..|+.+ +.+.|. +++||.|.|.+-++. + . .+.+. +
T Consensus 200 ~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~-~ 276 (502)
T PLN02916 200 RTINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVS-G 276 (502)
T ss_pred cCHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEE-C
Confidence 3789999652 23667766789998 888884 689999998654443 2 1 14444 8
Q ss_pred ccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 66 EHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 66 ~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
++++.|||+|++..+ ...-|+.+ .+++.-+.+|.|....|=|+
T Consensus 277 ~~F~A~nitf~Ntag~~~~QAVALrv--~~D~a~fy~C~f~G~QDTLy 322 (502)
T PLN02916 277 DGFWARDITFENTAGPHKHQAVALRV--SSDLSVFYRCSFKGYQDTLF 322 (502)
T ss_pred CCEEEEeeEEEeCCCCCCCceEEEEE--cCCcEEEEeeeEeccCceeE
Confidence 999999999998643 23344545 47899999999987766654
No 62
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.64 E-value=0.029 Score=57.46 Aligned_cols=98 Identities=18% Similarity=0.336 Sum_probs=67.8
Q ss_pred chHHHHhhcC----CCeEEEEEeceEEEeCc-eeEec---cCeEEEeeccceEEE-cC-------------CEEEeeecc
Q 022635 10 GSLREGCRRR----EPLWIVFEVSGTIHLSS-YLSVS---SYKTIDGRGQRIKLT-GK-------------GLRLKECEH 67 (294)
Q Consensus 10 GsLr~a~~~~----~P~~Ivf~v~G~I~l~~-~l~v~---sn~TI~G~g~g~~i~-g~-------------gl~i~~~~N 67 (294)
-++++||++- ..|+||+-..|++. + .+.|. +|+||+|.|.+-+|. +. .|.+ .+++
T Consensus 285 ~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~ 361 (587)
T PLN02484 285 KTISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAG 361 (587)
T ss_pred ccHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCC
Confidence 3788899762 23666666789998 6 48784 689999998655543 21 1344 3899
Q ss_pred EEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 68 VIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 68 VIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
++.|||+|++..+. ..-|+.+.-.+++.-+-+|.|....|=|+
T Consensus 362 F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy 405 (587)
T PLN02484 362 FIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLY 405 (587)
T ss_pred EEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccc
Confidence 99999999986431 22344443357899999999987666554
No 63
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=96.60 E-value=0.11 Score=51.21 Aligned_cols=98 Identities=14% Similarity=0.242 Sum_probs=68.2
Q ss_pred hHHHHhhcC-----CCeEEEEEeceEEEeCceeEec---cCeEEEeecc---ceEEEcC---------------------
Q 022635 11 SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQ---RIKLTGK--------------------- 58 (294)
Q Consensus 11 sLr~a~~~~-----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~---g~~i~g~--------------------- 58 (294)
++++||++. ..+++++-..|+.+ +.|.|. +++||.|.|. +..|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 899999852 23566665679998 888883 7999999763 3444321
Q ss_pred --------------------C------EEEeeeccEEEEeeEEEcCCCC-----CCCceEEcCCCceEEEEceeecCCCC
Q 022635 59 --------------------G------LRLKECEHVIICNLEFEGGRGH-----DVDGIQIKPNSRHIWIDRCSLRDYDD 107 (294)
Q Consensus 59 --------------------g------l~i~~~~NVIirnl~i~~~~~~-----~~D~i~i~~~~~~vwIDHcs~s~~~D 107 (294)
+ +.+ .+++++.+||+|++..+. ..-++-|.-.++++.+.+|.|....|
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QD 252 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQD 252 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccc
Confidence 1 333 479999999999986431 12233333357899999999998888
Q ss_pred CeeE
Q 022635 108 GLID 111 (294)
Q Consensus 108 g~id 111 (294)
=|+.
T Consensus 253 TLy~ 256 (422)
T PRK10531 253 TFFV 256 (422)
T ss_pred eeee
Confidence 8775
No 64
>PLN02671 pectinesterase
Probab=96.58 E-value=0.14 Score=49.46 Aligned_cols=109 Identities=12% Similarity=0.219 Sum_probs=74.0
Q ss_pred hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeecc---ceEEEcC-------------------CEE
Q 022635 11 SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQ---RIKLTGK-------------------GLR 61 (294)
Q Consensus 11 sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~---g~~i~g~-------------------gl~ 61 (294)
|+++||++- ..+++++-..|+.+ ++|.|. +++||.|.|. ...|... .+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY~--EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIYR--EKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceEE--EEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 889999762 22455555689988 888883 7899999863 3344410 134
Q ss_pred EeeeccEEEEeeEEEcCCC-------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635 62 LKECEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 127 (294)
Q Consensus 62 i~~~~NVIirnl~i~~~~~-------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~ 127 (294)
+ .+++++.+||+|++... ...-|+.+ .++++-+.+|.|....|=|++- ...--+.+|.|.
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv--~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~CyIe 217 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEPGGQGMQAVALRI--SGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQCYIQ 217 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEE--cCccEEEEcceEeccccccEeC---CCcEEEEecEEE
Confidence 4 37999999999998621 12344555 4789999999999888887643 233455566655
No 65
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.31 E-value=0.022 Score=49.78 Aligned_cols=102 Identities=25% Similarity=0.416 Sum_probs=57.8
Q ss_pred CeEEEeeccceEEE--cCCEEEeeeccEEEEeeEEEcCCCCCCCceE-------------------EcCCCceEEEEcee
Q 022635 43 YKTIDGRGQRIKLT--GKGLRLKECEHVIICNLEFEGGRGHDVDGIQ-------------------IKPNSRHIWIDRCS 101 (294)
Q Consensus 43 n~TI~G~g~g~~i~--g~gl~i~~~~NVIirnl~i~~~~~~~~D~i~-------------------i~~~~~~vwIDHcs 101 (294)
+++|.|.+. ... ..++.+..+.++.|+|++++... .+++. ++.+..++++..|.
T Consensus 98 nl~i~~~~~--~~~~~~~~i~~~~~~~~~i~nv~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T PF12708_consen 98 NLTIDGNGI--DPNNNNNGIRFNSSQNVSISNVRIENSG---GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCI 172 (225)
T ss_dssp EEEEEETCG--CE-SCEEEEEETTEEEEEEEEEEEES-S---S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEE
T ss_pred eeEEEcccc--cCCCCceEEEEEeCCeEEEEeEEEEccC---ccEEEEEccccCcEeecccceeeeeccceeEEEECCcc
Confidence 456665522 121 24577777899999999999742 22332 22112233445555
Q ss_pred ecCCCCCeeEeeeCCccEEEEccEEee-cCeeeEecCCCCCCCCcceEEEEEceeecCCC
Q 022635 102 LRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR 160 (294)
Q Consensus 102 ~s~~~Dg~id~~~~s~~vTiS~~~f~~-h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~ 160 (294)
+..+.+| +. .+.++++++||.|.. ...+..+-... .+.+.+|.|.+|.
T Consensus 173 ~~~~~~g-~~--~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 173 FNGGDNG-II--LGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCD 221 (225)
T ss_dssp EESSSCS-EE--CEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSS
T ss_pred ccCCCce-eE--eecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCc
Confidence 5556666 32 234788888888876 45555443322 4677777777765
No 66
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.07 E-value=0.079 Score=46.95 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=76.5
Q ss_pred CeEEEee---------ccceEEEcCCEEEeeeccEEEEeeEEEcCCC-----CCCCceEEcCCCceEEEEceeecCCCCC
Q 022635 43 YKTIDGR---------GQRIKLTGKGLRLKECEHVIICNLEFEGGRG-----HDVDGIQIKPNSRHIWIDRCSLRDYDDG 108 (294)
Q Consensus 43 n~TI~G~---------g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~-----~~~D~i~i~~~~~~vwIDHcs~s~~~Dg 108 (294)
|++|-+. +.+..-.+..|.+.+++||+|.|..|..+.. ..+..+.+..++++|-|-+|-|......
T Consensus 52 Nl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~ 131 (200)
T PF00544_consen 52 NLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKT 131 (200)
T ss_dssp S-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEET
T ss_pred CCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccc
Confidence 6777773 2222223456999999999999999998621 1233456654688999999999753222
Q ss_pred eeE------eeeCCccEEEEccEEeecCee-eEecCCCCCCCCcceEEEEEceeecCCCCCcceeec-CeEEEEcceE
Q 022635 109 LID------ITRQSTDITVSRCYFTQHDKT-MLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYT 178 (294)
Q Consensus 109 ~id------~~~~s~~vTiS~~~f~~h~~~-~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g~~h~~NN~~ 178 (294)
.+- .......||+-+|+|.+...- =++... .+-+.+|+|.+.....=.++. +++-+.||||
T Consensus 132 ~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r~G---------~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 132 MLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVRFG---------YVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp CEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEECSC---------EEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred cccCCCCCccccCCceEEEEeEEECchhhCCCccccc---------EEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 211 111226999999999753321 122211 688889999877777666664 4678999986
No 67
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=95.91 E-value=0.18 Score=47.42 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=90.1
Q ss_pred CCceEEcCCCceEEEEceeecCCC-----CCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCC--CCcceEEEEEcee
Q 022635 83 VDGIQIKPNSRHIWIDRCSLRDYD-----DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV--GDRCIRVTIHHCL 155 (294)
Q Consensus 83 ~D~i~i~~~~~~vwIDHcs~s~~~-----Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~--~d~~~~vT~hhN~ 155 (294)
+-++.|. .+.||+|...+|.... +..|.+..++.+|=|-+|.|..+....---+.|... ......||+..|+
T Consensus 116 g~gl~i~-~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 116 GGGLKIR-DAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred eceEEEE-eCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 5678886 6899999999998654 233788778999999999999755531111111111 1112479999999
Q ss_pred ecCCC---------CCcceeecCeEEEEcceEeCccceeEEecCCceEEEEceEEEcCCccceeeeehhcccccccCCcc
Q 022635 156 FDGTR---------QRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSG 226 (294)
Q Consensus 156 f~~~~---------~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~~~~G 226 (294)
|++.. .-++.=..-++.+-+|||.|.-.++-..|- +.+.+-||||+.-+...+-.-+ ....
T Consensus 195 fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRf-G~vHvyNNYy~~~~~~g~a~~i---------G~~A 264 (345)
T COG3866 195 FHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRF-GMVHVYNNYYEGNPKFGVAITI---------GTSA 264 (345)
T ss_pred eecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEe-eEEEEeccccccCcccceEEee---------ccce
Confidence 97643 223331112467889999987554333332 4667779999954432211000 0122
Q ss_pred eEEEeCCeEeeCce
Q 022635 227 LIRSEGDIFLKGAQ 240 (294)
Q Consensus 227 ~~~~~gn~~~~g~~ 240 (294)
-++.+.|+|.++..
T Consensus 265 kiyvE~NyF~~~~~ 278 (345)
T COG3866 265 KIYVENNYFENGSE 278 (345)
T ss_pred EEEEecceeccCCC
Confidence 47788888888643
No 68
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=95.03 E-value=0.2 Score=43.96 Aligned_cols=65 Identities=26% Similarity=0.239 Sum_probs=42.5
Q ss_pred ccEEEEccEEeecCeee--EecCCCCCCCCcceEEEEEceeecCCCCCccee--ecC-------eEEEEcceEeCcc
Q 022635 117 TDITVSRCYFTQHDKTM--LIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL--RFG-------KVHLYNNYTRNWG 182 (294)
Q Consensus 117 ~~vTiS~~~f~~h~~~~--liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~--r~g-------~~h~~NN~~~n~~ 182 (294)
++|.|=+|.+.+..-.. |+|...+...+....|-+|||.|-.+.. +|.. ..| ..-+.||+++..-
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGt-n~~~~wvGGIv~sGF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGT-NPNIDWVGGIVTSGFYNTLIENNVFDGVY 77 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCc-CCCCceeeeEEeccccccEEEeeeecccc
Confidence 57888999998865543 5576544444444589999999977643 4443 322 2468888887653
No 69
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=94.83 E-value=0.12 Score=50.98 Aligned_cols=103 Identities=16% Similarity=0.241 Sum_probs=50.0
Q ss_pred ceEEEEceeecCC--CCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCC--cceeec
Q 022635 93 RHIWIDRCSLRDY--DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQR--HPRLRF 168 (294)
Q Consensus 93 ~~vwIDHcs~s~~--~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R--~P~~r~ 168 (294)
.+..|.||-|..| .-|.|++| |..-||.+|.|.+..-+.-+=|.. .-++..|+|-++..+ .+-+|.
T Consensus 199 s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~gN~FiGng~~~~tGGIRI 268 (425)
T PF14592_consen 199 SNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEGNVFIGNGVKEGTGGIRI 268 (425)
T ss_dssp ---EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES-EEEE-SSSS-B--EEE
T ss_pred cceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEeccEEecCCCcCCCCceEE
Confidence 4556666666543 44556664 566677777777655554443332 358888888766643 466663
Q ss_pred -CeE-EEEcceEeCccceeE----E---ec---------CCceEEEEceEEEcCC
Q 022635 169 -GKV-HLYNNYTRNWGIYAV----C---AS---------VESQIYSQCNIYEAGQ 205 (294)
Q Consensus 169 -g~~-h~~NN~~~n~~~~~~----~---~~---------~~~~v~~e~N~f~~g~ 205 (294)
|.- .|+|||+++...+.+ . +. .--.+++++|-|.+..
T Consensus 269 i~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~ 323 (425)
T PF14592_consen 269 IGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCK 323 (425)
T ss_dssp -SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-S
T ss_pred ecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccC
Confidence 544 488888887533211 1 10 0125677888888765
No 70
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=94.05 E-value=0.26 Score=50.10 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=87.8
Q ss_pred CCCeEEEEEeceEEEeCc------e---eEe--ccCeEEEeeccceEEE--c----CCEEEeeeccEEEEeeEEEcCCCC
Q 022635 19 REPLWIVFEVSGTIHLSS------Y---LSV--SSYKTIDGRGQRIKLT--G----KGLRLKECEHVIICNLEFEGGRGH 81 (294)
Q Consensus 19 ~~P~~Ivf~v~G~I~l~~------~---l~v--~sn~TI~G~g~g~~i~--g----~gl~i~~~~NVIirnl~i~~~~~~ 81 (294)
..|+.+.|.--....+.. + +.+ .+++||.+. +|. + .||.+..|+||.|.+.||..+
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl----~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtg--- 308 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNL----TIDANRFDNTDGFDPGSCSNVLIEGCRFDTG--- 308 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecce----EEECCCCCCCCccccccceeEEEeccEEecC---
Confidence 467888876555555432 1 111 145565554 332 2 378999999999999999974
Q ss_pred CCCceEEc-----------CCCceEEEEceeecCCCCCeeEe---eeCCccEEEEccEEeecCeeeEecCCCCCCCCcce
Q 022635 82 DVDGIQIK-----------PNSRHIWIDRCSLRDYDDGLIDI---TRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCI 147 (294)
Q Consensus 82 ~~D~i~i~-----------~~~~~vwIDHcs~s~~~Dg~id~---~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~ 147 (294)
+|+|.+. .-+++|||-||-|..+.-+++.- ..+..+|++.+|.|.+.+.+.-|....... .+..
T Consensus 309 -DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~ 386 (542)
T COG5434 309 -DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVR 386 (542)
T ss_pred -CceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEE
Confidence 4555553 13578999999999887776542 245689999999999977776666543221 1224
Q ss_pred EEEEEceeecCCC
Q 022635 148 RVTIHHCLFDGTR 160 (294)
Q Consensus 148 ~vT~hhN~f~~~~ 160 (294)
+|+|+.+...+..
T Consensus 387 nI~~~~~~~~nv~ 399 (542)
T COG5434 387 NIVFEDNKMRNVK 399 (542)
T ss_pred EEEEecccccCcc
Confidence 6777776666554
No 71
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=91.88 E-value=3.4 Score=39.49 Aligned_cols=146 Identities=12% Similarity=0.172 Sum_probs=93.3
Q ss_pred chHHHHhhc-----CCCeEEEEEeceEEEeCceeEec-cC--eEEEeeccc--eEEE-----c---C--CEE--------
Q 022635 10 GSLREGCRR-----REPLWIVFEVSGTIHLSSYLSVS-SY--KTIDGRGQR--IKLT-----G---K--GLR-------- 61 (294)
Q Consensus 10 GsLr~a~~~-----~~P~~Ivf~v~G~I~l~~~l~v~-sn--~TI~G~g~g--~~i~-----g---~--gl~-------- 61 (294)
-|.++||++ ...|.+++-..|+.+ +.|.|. ++ +|+.|.+.. -+.. + . +..
T Consensus 95 ~TIQaAvdaA~~~~~~kr~yI~vk~GvY~--e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss~ 172 (405)
T COG4677 95 TTIQAAVDAAIIKRTNKRQYIAVKAGVYQ--ETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSSR 172 (405)
T ss_pred HHHHHHHhhhcccCCCceEEEEEccceec--eeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccch
Confidence 478888876 224777777789988 778885 44 999999654 1221 1 1 110
Q ss_pred ------------EeeeccEEEEeeEEEcCCC--C---CCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCc-------
Q 022635 62 ------------LKECEHVIICNLEFEGGRG--H---DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQST------- 117 (294)
Q Consensus 62 ------------i~~~~NVIirnl~i~~~~~--~---~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~------- 117 (294)
+...++.++|||+|+...+ . ..-++.+...++.+++..|.+....|-++.-..+..
T Consensus 173 ~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~ 252 (405)
T COG4677 173 SATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNR 252 (405)
T ss_pred hhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCc
Confidence 1135789999999997432 1 123555655689999999999988888775433222
Q ss_pred --cEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee
Q 022635 118 --DITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR 167 (294)
Q Consensus 118 --~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r 167 (294)
.--+.||.|.. +--+++|+. .+-||.|-|.-...|.|--.
T Consensus 253 ~~R~yftNsyI~G-dvDfIfGsg---------taVFd~c~i~~~d~r~~~~g 294 (405)
T COG4677 253 QPRTYFTNSYIEG-DVDFIFGSG---------TAVFDNCEIQVVDSRTQQEG 294 (405)
T ss_pred chhhheecceecc-cceEEeccc---------eEEeccceEEEeccCCCcce
Confidence 12234555552 234666765 46777787777778875533
No 72
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=86.59 E-value=5.8 Score=38.18 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=58.3
Q ss_pred CEEEeeeccEEEEeeEEEcCCC----CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCee
Q 022635 59 GLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT 132 (294)
Q Consensus 59 gl~i~~~~NVIirnl~i~~~~~----~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~ 132 (294)
|+.+.++.++.|+.-+|.+-.. .-+.||.+. ++..+-|-.++++...|+.. + .-|+.-+++.|.|++..++
T Consensus 122 Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy-~-~~S~~~~~~gnr~~~~Ryg 196 (408)
T COG3420 122 GIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY-S-DTSQHNVFKGNRFRDLRYG 196 (408)
T ss_pred EEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE-E-cccccceecccchhheeee
Confidence 5677789999999999987542 458999998 99999999999999999964 3 3578889999999875544
No 73
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=85.06 E-value=6.4 Score=36.53 Aligned_cols=64 Identities=22% Similarity=0.389 Sum_probs=48.8
Q ss_pred eeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCC
Q 022635 64 ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP 139 (294)
Q Consensus 64 ~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d 139 (294)
+++|..|.|.+|..|.. + +- .++||-+++|.|.|-+-= .=++++.|.+|.|.+-.++.+|-+.+
T Consensus 17 ~~~d~~l~~~~f~dGES----~--LK-es~nI~~~~~~F~~KYP~-----Wh~~~~~i~~~~f~~~aRa~iWYs~~ 80 (277)
T PF12541_consen 17 GSHDLRLENCTFADGES----P--LK-ESRNIELKNCIFKWKYPL-----WHSDNIKIENCYFTEMARAAIWYSNN 80 (277)
T ss_pred ccCCCEEEeeEEeCCCc----c--cc-cccceEEECCEEeeECce-----EEECCeEEEeeEEeecceeeeeEeCC
Confidence 47899999999996532 2 32 689999999999875531 12678889999999888888887653
No 74
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=84.15 E-value=8 Score=35.91 Aligned_cols=98 Identities=21% Similarity=0.277 Sum_probs=50.0
Q ss_pred EEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCC--CCCe---------eEe---eeCCccEEEEccEE
Q 022635 61 RLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY--DDGL---------IDI---TRQSTDITVSRCYF 126 (294)
Q Consensus 61 ~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~--~Dg~---------id~---~~~s~~vTiS~~~f 126 (294)
++..+++|-++|+.+. +|-+.| .+.||-|||..+..- .|+. |.. -..++||||-.+.+
T Consensus 113 t~W~c~~i~l~nv~~~------gdYf~m--~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i 184 (277)
T PF12541_consen 113 TLWNCRGIKLKNVQAN------GDYFFM--NSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVI 184 (277)
T ss_pred cCEEeCCeEEEeEEEe------ceEeee--eccceEEeceEEeCCEEeeceeeEEEEccEEecccccccCCceEEEcceE
Confidence 3345566666666663 355555 367788887776421 1221 000 01245555555555
Q ss_pred eecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeecCeEEEEcceEeC
Q 022635 127 TQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN 180 (294)
Q Consensus 127 ~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n 180 (294)
. +-.+|... .++|+-+|...+. .|..-.-.+.+.|.-+.+
T Consensus 185 ~----GEYLgW~S-------kNltliNC~I~g~---QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 185 N----GEYLGWNS-------KNLTLINCTIEGT---QPLCYCDNLVLENCTMID 224 (277)
T ss_pred e----eeEEEEEc-------CCeEEEEeEEecc---CccEeecceEEeCcEeec
Confidence 4 22222221 1577777776654 355544455666665553
No 75
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=81.48 E-value=3.3 Score=27.08 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=26.8
Q ss_pred ceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEee
Q 022635 85 GIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ 128 (294)
Q Consensus 85 ~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~ 128 (294)
||.+. .+++..|..|.++...|| |.+. .+.+-+|..|.|.+
T Consensus 1 GI~l~-~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLE-SSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTASS 41 (44)
T ss_pred CEEEE-ecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEEc
Confidence 45665 566666777777777776 4453 46667777776653
No 76
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=76.97 E-value=15 Score=37.30 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=36.7
Q ss_pred CCEEEeeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCee
Q 022635 58 KGLRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 110 (294)
Q Consensus 58 ~gl~i~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i 110 (294)
..+.+. +++++.|||+|++..+ ...-|+.+ .+.++-+.+|.|....|=|+
T Consensus 263 aT~~v~-~~~F~a~nitf~Ntag~~~~QAvAl~v--~~D~~~fy~c~~~G~QDTLy 315 (497)
T PLN02698 263 ATFTIT-GDGFIARDIGFKNAAGPKGEQAIALSI--TSDHSVLYRCSIAGYQDTLY 315 (497)
T ss_pred eeEEEE-CCCeEEEeeEEEECCCCCCCceEEEEe--cCCcEEEEcceeecccchhe
Confidence 346665 8999999999998643 23444545 47899999999987766654
No 77
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=68.68 E-value=31 Score=30.47 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=43.8
Q ss_pred CCceEEEEceeecCCC-CCeeEe-----eeCCccEEEEccEEeecCeeeEecC--C-CCCCCCcceEEEEEceeecCCCC
Q 022635 91 NSRHIWIDRCSLRDYD-DGLIDI-----TRQSTDITVSRCYFTQHDKTMLIGA--D-PSHVGDRCIRVTIHHCLFDGTRQ 161 (294)
Q Consensus 91 ~~~~vwIDHcs~s~~~-Dg~id~-----~~~s~~vTiS~~~f~~h~~~~liG~--~-d~~~~d~~~~vT~hhN~f~~~~~ 161 (294)
.+++|+|.|+.|.... ...++. ..+-.+..|.||.|+.-..+.+.-. . +......+...++..|.+.++..
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 4679999999997632 211111 1355688999999997544433321 1 11112223456666688898887
Q ss_pred Cc
Q 022635 162 RH 163 (294)
Q Consensus 162 R~ 163 (294)
|.
T Consensus 112 r~ 113 (198)
T PF08480_consen 112 RK 113 (198)
T ss_pred cc
Confidence 73
No 78
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=66.93 E-value=97 Score=27.96 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=58.8
Q ss_pred eceEEEeCceeEeccCeEEEeeccceEEEcC---------------CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCC
Q 022635 28 VSGTIHLSSYLSVSSYKTIDGRGQRIKLTGK---------------GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNS 92 (294)
Q Consensus 28 v~G~I~l~~~l~v~sn~TI~G~g~g~~i~g~---------------gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~ 92 (294)
..|+..+++++.|.+.-|.+|.+. ++.+. -|.+. +-..|+|+.|-. ...|||... +
T Consensus 12 ~~~~~~~~~~i~V~aG~~fDG~~k--~~~~~~~~~~~~~q~e~q~~vF~le--~GatlkNvIiG~---~~~dGIHC~-G- 82 (215)
T PF03211_consen 12 STGTVTVSSTIVVKAGEVFDGGMK--RYDRGPSACGDGGQSEDQDPVFILE--DGATLKNVIIGA---NQADGIHCK-G- 82 (215)
T ss_dssp TT-EEEESS-EEE-TTEEEEEEEE--EEEECCCTT--SSSGSC---SEEEE--TTEEEEEEEETS---S-TT-EEEE-S-
T ss_pred CCCceEcccCeEECCCceEeCCee--EEccCCCccCCCCcCCccceEEEec--CCCEEEEEEEcC---CCcCceEEc-C-
Confidence 456777777888877777777522 22211 16665 445666666632 346899887 3
Q ss_pred ceEEEEceeecCCCCCeeEeeeCCccEEEEccEEee-cCeeeEec
Q 022635 93 RHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTMLIG 136 (294)
Q Consensus 93 ~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~-h~~~~liG 136 (294)
...|+.+-+.+-.+..+.++..+..++|..+-+.+ .+|.+-..
T Consensus 83 -~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N 126 (215)
T PF03211_consen 83 -SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHN 126 (215)
T ss_dssp -CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE-
T ss_pred -CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEec
Confidence 57777777888766668886555488888887764 45555443
No 79
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=58.88 E-value=52 Score=33.69 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=37.9
Q ss_pred cEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecC--eeeEecCCCCCCCC
Q 022635 67 HVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHD--KTMLIGADPSHVGD 144 (294)
Q Consensus 67 NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~--~~~liG~~d~~~~d 144 (294)
+..|+|+++-+.+....|||.|. ..+. |++|=|--..|. |-+++ .+++|++|.+-.-+ -.+-+|.......+
T Consensus 357 ~~~i~nyKqVGaW~~qtDGi~ly-~nS~--i~dcF~h~nDD~-iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~pr~isn 430 (582)
T PF03718_consen 357 SMNISNYKQVGAWYFQTDGIELY-PNST--IRDCFIHVNDDA-IKLYH--SNVSVSNTVIWKNENGPIIQWGWTPRNISN 430 (582)
T ss_dssp EEEEEEEEEE---CTT----B---TT-E--EEEEEEEESS-S-EE--S--TTEEEEEEEEEE-SSS-SEE--CS---EEE
T ss_pred cceeeceeeeeeEEeccCCcccc-CCCe--eeeeEEEecCch-hheee--cCcceeeeEEEecCCCCeEEeeccccccCc
Confidence 36788888887777788999997 4444 456655444444 55654 88999999987522 23555665322111
Q ss_pred -cceEEEEEce
Q 022635 145 -RCIRVTIHHC 154 (294)
Q Consensus 145 -~~~~vT~hhN 154 (294)
..-++.+.|+
T Consensus 431 v~veni~IIh~ 441 (582)
T PF03718_consen 431 VSVENIDIIHN 441 (582)
T ss_dssp EEEEEEEEEE-
T ss_pred eEEeeeEEEee
Confidence 1135666676
No 80
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=54.67 E-value=75 Score=29.24 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=46.7
Q ss_pred cCCEEEeeeccEEEEeeEEEcCCCCCCCceEEcC-----CCceEEEEceeecCCCCCeeEeee--CCccEEEEccEEeec
Q 022635 57 GKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKP-----NSRHIWIDRCSLRDYDDGLIDITR--QSTDITVSRCYFTQH 129 (294)
Q Consensus 57 g~gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~-----~~~~vwIDHcs~s~~~Dg~id~~~--~s~~vTiS~~~f~~h 129 (294)
|.++.|. +.+..|+|-+|.+.. .+||.+.. ...++.|..+++.....| +++.. ......|.||+|.+.
T Consensus 114 g~Gi~Ie-ss~~tI~Nntf~~~~---~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G-i~i~~~~~~~~n~I~NN~I~~N 188 (246)
T PF07602_consen 114 GTGIWIE-SSSPTIANNTFTNNG---REGIFVTGTSANPGINGNVISGNSIYFNKTG-ISISDNAAPVENKIENNIIENN 188 (246)
T ss_pred ceEEEEe-cCCcEEEeeEEECCc---cccEEEEeeecCCcccceEeecceEEecCcC-eEEEcccCCccceeeccEEEeC
Confidence 3468887 459999999999843 46676541 234566777787776666 33321 122247899999976
Q ss_pred Ceee
Q 022635 130 DKTM 133 (294)
Q Consensus 130 ~~~~ 133 (294)
..++
T Consensus 189 ~~Gi 192 (246)
T PF07602_consen 189 NIGI 192 (246)
T ss_pred CcCe
Confidence 6554
No 81
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=52.96 E-value=64 Score=31.68 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=48.9
Q ss_pred CCccEEEEccEEeecC--eeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeecCeEEEEcceEeCccceeEEecCCc
Q 022635 115 QSTDITVSRCYFTQHD--KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVES 192 (294)
Q Consensus 115 ~s~~vTiS~~~f~~h~--~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~ 192 (294)
+-..||+.|+.|...+ .+.++-.. .+++||.+.|-+...=.=.++ +...+....++.-- -++......
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~--------t~~~~hgC~F~gf~g~cl~~~-~~~~VrGC~F~~C~-~gi~~~~~~ 188 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHAN--------TNTLFHGCSFFGFHGTCLESW-AGGEVRGCTFYGCW-KGIVSRGKS 188 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEec--------ceEEEEeeEEecCcceeEEEc-CCcEEeeeEEEEEE-EEeecCCcc
Confidence 4578999999998543 33343322 278999999988766555555 55566666655321 244444455
Q ss_pred eEEEEceEEEc
Q 022635 193 QIYSQCNIYEA 203 (294)
Q Consensus 193 ~v~~e~N~f~~ 203 (294)
++.+-.+.|+.
T Consensus 189 ~lsVk~C~Fek 199 (386)
T PF01696_consen 189 KLSVKKCVFEK 199 (386)
T ss_pred eEEeeheeeeh
Confidence 66666666665
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=44.87 E-value=54 Score=21.08 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=29.5
Q ss_pred CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC
Q 022635 59 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD 104 (294)
Q Consensus 59 gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~ 104 (294)
||.+..+++..|++=+|... .+||.+. .+++-.|..|.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~----~~GI~~~-~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN----SYGIYLT-DSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCC----CCEEEEE-eCCCCEeECCEEEc
Confidence 46666677777777777753 4699997 67777788887764
No 83
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=43.76 E-value=1.5e+02 Score=26.78 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=49.3
Q ss_pred CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCc-eEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEe
Q 022635 59 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSR-HIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLI 135 (294)
Q Consensus 59 gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~-~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~li 135 (294)
|+...+ +..|+|+-++.. ..||+++. +.. .+.|..+.+..+.|..|-.. +.-.++|++ |.-.+.+-|+
T Consensus 77 GIHC~G--~Ctl~NVwwedV---cEDA~T~k-g~~~~~~I~ggga~~A~DKV~Q~N-g~Gtv~I~n--F~a~d~GKl~ 145 (215)
T PF03211_consen 77 GIHCKG--SCTLENVWWEDV---CEDAATFK-GDGGTVTIIGGGARNASDKVFQHN-GGGTVTIKN--FYAEDFGKLY 145 (215)
T ss_dssp -EEEES--CEEEEEEEESS----SSESEEEE-SSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEE--EEEEEEEEEE
T ss_pred ceEEcC--CEEEEEEEeccc---ceeeeEEc-CCCceEEEeCCcccCCCccEEEec-CceeEEEEe--EEEcCCCEEE
Confidence 455553 777888888764 57999997 444 99999999999999998874 567799998 4433444444
No 84
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=40.05 E-value=3.1e+02 Score=27.73 Aligned_cols=144 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHhhc-CCCeEEEEEeceEEEeCceeEeccCeEEEee-----ccceEEEcCC---EEEeeeccEEEEeeEEE------
Q 022635 12 LREGCRR-REPLWIVFEVSGTIHLSSYLSVSSYKTIDGR-----GQRIKLTGKG---LRLKECEHVIICNLEFE------ 76 (294)
Q Consensus 12 Lr~a~~~-~~P~~Ivf~v~G~I~l~~~l~v~sn~TI~G~-----g~g~~i~g~g---l~i~~~~NVIirnl~i~------ 76 (294)
||.-.+. .+|+ +|.-.|+.+ ...|.|.|+++|+|. ...+.|.|.. |.+.. +.-+-+++++
T Consensus 39 ~~~l~e~~~e~L--IFlH~G~~e-~~~i~I~sdvqiiGAs~~dia~sVvle~~~~t~l~F~~--~AY~Gy~Tvkf~~d~~ 113 (625)
T KOG1777|consen 39 LRFLDENDEEKL--IFLHEGTHE-TETIRITSDVQIIGASPSDIATSVVLEGRHATTLEFQE--SAYVGYVTVKFEPDQE 113 (625)
T ss_pred hhhcccccccce--EEEEecccc-ceEEEEcCCeeEeccCCccceeeEEEecccccEEEEee--cceEEEEEEEeccccc
Q ss_pred ---------------------------------------------cCCCCCCCceEEcCCCceEEEEceeecCCCCCeeE
Q 022635 77 ---------------------------------------------GGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLID 111 (294)
Q Consensus 77 ---------------------------------------------~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id 111 (294)
.-...+.-||.+. .--.=++.||.|+...+.-+.
T Consensus 114 h~~h~~ld~~~d~~p~ie~c~i~s~~~~g~Avcv~g~a~P~~~~c~isDceNvglyvT-d~a~g~yEh~ei~~NalA~vw 192 (625)
T KOG1777|consen 114 HHAHVCLDIEVDASPAIEECIIRSTGGVGAAVCVPGEAEPEIKLCAISDCENVGLYVT-DHAQGIYEHCEISRNALAGVW 192 (625)
T ss_pred cceeEEEeeccCCCcccccccccCCCccCcccccCCccCcceeecccccCcceeEEEE-eccccceecchhcccccccee
Q ss_pred eeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEc--eeecCCCCCcceeecCeEEEEcc
Q 022635 112 ITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHH--CLFDGTRQRHPRLRFGKVHLYNN 176 (294)
Q Consensus 112 ~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hh--N~f~~~~~R~P~~r~g~~h~~NN 176 (294)
++ .--+=++.+|.+..-.-+.+ +||+| -+|.+|.--.-++..-.+.+.=|
T Consensus 193 vk-nha~p~~R~~~ih~G~dvGi--------------ftf~hg~Gy~e~cd~~qnlisg~eVkf~an 244 (625)
T KOG1777|consen 193 VK-NHAFPTMRNCTIHHGRDVGI--------------FTFEHGQGYFESCDIHQNLISGIEVKFRAN 244 (625)
T ss_pred ec-cccChhhhhceeecCCccce--------------EEeccCcCCCccchHHHhhhcceEEEeecc
No 85
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=33.14 E-value=2.5e+02 Score=23.19 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=39.0
Q ss_pred eccEEEEeeEEEcCCC------------CCCCceEEcCCCceEEEEceeecC---CCCCeeEeeeCCccE-EEEc
Q 022635 65 CEHVIICNLEFEGGRG------------HDVDGIQIKPNSRHIWIDRCSLRD---YDDGLIDITRQSTDI-TVSR 123 (294)
Q Consensus 65 ~~NVIirnl~i~~~~~------------~~~D~i~i~~~~~~vwIDHcs~s~---~~Dg~id~~~~s~~v-TiS~ 123 (294)
..++-|||..++.|+- .+.+++.|. .....+|-=|.-++ +..|.||+..+...| ||.|
T Consensus 14 ~~~l~i~Na~L~~GKfy~~~~kd~eis~~~v~~~~i~-~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyW 87 (131)
T PF06355_consen 14 SGDLKIKNAQLSWGKFYRDGNKDDEISPDDVNGIVIP-PGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYW 87 (131)
T ss_pred CccEEEEccEeccCccccCCCcCCEeCccccCceEec-CCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEE
Confidence 3478888888887641 234677775 56667888887755 578889987655445 5544
No 86
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=30.61 E-value=68 Score=17.12 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=6.6
Q ss_pred eEEEEceeecCCCC
Q 022635 94 HIWIDRCSLRDYDD 107 (294)
Q Consensus 94 ~vwIDHcs~s~~~D 107 (294)
+++|.+|.|.....
T Consensus 3 ~~~i~~n~i~~~~~ 16 (26)
T smart00710 3 NVTIENNTIRNNGG 16 (26)
T ss_pred CEEEECCEEEeCCC
Confidence 34455555544433
No 87
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=26.08 E-value=57 Score=23.36 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=13.7
Q ss_pred CceEEcCCCceEEEEceee
Q 022635 84 DGIQIKPNSRHIWIDRCSL 102 (294)
Q Consensus 84 D~i~i~~~~~~vwIDHcs~ 102 (294)
+-+.+...+.-|||+||+=
T Consensus 14 ~~i~VtY~G~pV~Ie~vde 32 (59)
T PRK03174 14 DMANVTYNGVPIYIQHVDE 32 (59)
T ss_pred cceEEEECCEEEEEEEEcC
Confidence 4445544788999999983
No 88
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=23.21 E-value=70 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.627 Sum_probs=13.6
Q ss_pred CceEEcCCCceEEEEceee
Q 022635 84 DGIQIKPNSRHIWIDRCSL 102 (294)
Q Consensus 84 D~i~i~~~~~~vwIDHcs~ 102 (294)
+-|.+...+.-|||+|++-
T Consensus 14 ~~i~V~Y~G~pV~Iq~vde 32 (59)
T PRK01625 14 SRIDVTYEGVPVWIESCDE 32 (59)
T ss_pred cceEEEECCEEEEEEEEcC
Confidence 4445544688999999983
No 89
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=23.15 E-value=2.9e+02 Score=23.04 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=43.6
Q ss_pred ccceEEEcCCEEEe---eeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEE
Q 022635 50 GQRIKLTGKGLRLK---ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDIT 120 (294)
Q Consensus 50 g~g~~i~g~gl~i~---~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vT 120 (294)
|.|..+.|..|.++ .+..||.+-.-.......+.=.|.++.+.-.|.+-+....-.+=|-|.++.++.--|
T Consensus 12 g~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y~V~l~~~g~~~~~vG~I~V~~dS~pGT 85 (134)
T PF08400_consen 12 GAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVYRVTLKVEGRPPVYVGDITVYEDSKPGT 85 (134)
T ss_pred CCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeEEEEEEECCCCceeEEEEEEecCCCCCc
Confidence 44556677777665 456676666655554444556677766667777777666555556677765554443
No 90
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=23.02 E-value=3.6e+02 Score=20.86 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=40.5
Q ss_pred cCeEEEeeccceEEE-c----CCEEEeeeccEEEEeeEEEc----CCC--CCCCceEEcCCCceEEEEceeecCC----C
Q 022635 42 SYKTIDGRGQRIKLT-G----KGLRLKECEHVIICNLEFEG----GRG--HDVDGIQIKPNSRHIWIDRCSLRDY----D 106 (294)
Q Consensus 42 sn~TI~G~g~g~~i~-g----~gl~i~~~~NVIirnl~i~~----~~~--~~~D~i~i~~~~~~vwIDHcs~s~~----~ 106 (294)
.++++.+.+ +..|. + ..+.+. ++++.++.+.++. +.. ....++. . .+++..|.+|.+... .
T Consensus 18 ~~~~~~~~~-~~vi~~~~~~~~~~~i~-~~~~~~~G~~~~~~~~~G~~~~~~~~~~~-~-~~~~~~i~~N~~~~~~~~~~ 93 (146)
T smart00722 18 GNVTNGGSG-GAVITDGSGRGSNITIN-SNDVRVDGITIGGSTVTGIYVSASGDGVI-Q-NTGKNLIIDNVTINGTEGSG 93 (146)
T ss_pred CCeEeeCcC-CEEEEecCCcEEEEEEe-CCCCEEECeEEEeEEeeCcccccCCceEe-c-CccccEEEcceecCCCccce
Confidence 455666653 34454 2 235555 6677888888875 221 1223333 2 456666666666654 4
Q ss_pred CCeeEeeeCCccEEEEccEEe
Q 022635 107 DGLIDITRQSTDITVSRCYFT 127 (294)
Q Consensus 107 Dg~id~~~~s~~vTiS~~~f~ 127 (294)
.| +.+. .+...++.+|.+.
T Consensus 94 ~G-i~~~-~~~~~~~~~N~i~ 112 (146)
T smart00722 94 AG-IVVT-AGSEGLFIGNRII 112 (146)
T ss_pred EE-EEEE-CCccceEecCeEE
Confidence 44 3442 2333335555544
No 91
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=21.97 E-value=75 Score=22.63 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=13.2
Q ss_pred CceEEcCCCceEEEEcee
Q 022635 84 DGIQIKPNSRHIWIDRCS 101 (294)
Q Consensus 84 D~i~i~~~~~~vwIDHcs 101 (294)
+-+.+...+.-|||+|++
T Consensus 14 ~~i~V~Y~G~pV~Ie~vd 31 (58)
T TIGR02861 14 EMINVTYKGVPVYIEHVD 31 (58)
T ss_pred cceEEEECCEEEEEEEEc
Confidence 334554478999999997
No 92
>PHA03051 Hypothetical protein; Provisional
Probab=21.42 E-value=38 Score=25.17 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=13.0
Q ss_pred eeecCCCCCcceee
Q 022635 154 CLFDGTRQRHPRLR 167 (294)
Q Consensus 154 N~f~~~~~R~P~~r 167 (294)
|.|-++++|.|.++
T Consensus 27 nify~nnsrcplfk 40 (88)
T PHA03051 27 NIFYGNNSRCPLFK 40 (88)
T ss_pred eeEecCCccChhHH
Confidence 89999999999987
Done!