BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022636
         (294 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4H5L|A Chain A, Crystal Structure Of Toscana Virus Nucleocapsid Protein
           Hexamer
 pdb|4H5L|B Chain B, Crystal Structure Of Toscana Virus Nucleocapsid Protein
           Hexamer
 pdb|4H5L|C Chain C, Crystal Structure Of Toscana Virus Nucleocapsid Protein
           Hexamer
 pdb|4H5L|D Chain D, Crystal Structure Of Toscana Virus Nucleocapsid Protein
           Hexamer
 pdb|4H5L|E Chain E, Crystal Structure Of Toscana Virus Nucleocapsid Protein
           Hexamer
 pdb|4H5L|F Chain F, Crystal Structure Of Toscana Virus Nucleocapsid Protein
           Hexamer
          Length = 253

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 121 GISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS-PLVPDLLGIIAG 179
           G S+V  L+ V+  +  N   +   L  + A ++PW + AL V+  S P+    +  IAG
Sbjct: 84  GASIVANLISVYQLKEGNPGRDTITLSRVSAAFVPWTVQALRVLSESLPVSGTTMDAIAG 143

Query: 180 HLYYFLTVLHP 190
            + Y   ++HP
Sbjct: 144 -VTYPRAMMHP 153


>pdb|1UG9|A Chain A, Crystal Structure Of Glucodextranase From Arthrobacter
           Globiformis I42
 pdb|1ULV|A Chain A, Crystal Structure Of Glucodextranase Complexed With
           Acarbose
          Length = 1020

 Score = 28.1 bits (61), Expect = 6.7,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 10/101 (9%)

Query: 79  YGVNLEKGPFERRTADFLWMMIFGALSLLVLS----AIPIFRSYFLGISLVFMLV-YVWS 133
           YG   +  P++      LW ++ G      L+    A+P   +     +  +M+   VW 
Sbjct: 573 YGEKADGSPWDGTGIGRLWPLLSGERGEYALANGQDALPYLETMHSAANAGYMIPEQVWD 632

Query: 134 REFPNSQINIYGLVTLKAFYLPWAM-----LALDVIFGSPL 169
           R+ P S  +  G  T  A  L WAM     LA  V  G+P+
Sbjct: 633 RDEPTSYGHELGRSTGSASPLSWAMAQYVRLAAGVKAGAPV 673


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.143    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,322,780
Number of Sequences: 62578
Number of extensions: 306300
Number of successful extensions: 767
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 3
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)