Query 022636
Match_columns 294
No_of_seqs 158 out of 640
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0858 Predicted membrane pro 100.0 5.1E-57 1.1E-61 404.5 18.1 206 2-209 3-209 (239)
2 PF04511 DER1: Der1-like famil 100.0 5.1E-50 1.1E-54 355.9 18.8 192 11-202 1-197 (197)
3 COG5291 Predicted membrane pro 100.0 7.5E-41 1.6E-45 300.1 7.5 201 6-208 11-215 (313)
4 KOG2632 Rhomboid family protei 99.7 5.1E-17 1.1E-21 148.4 10.7 178 3-185 6-195 (258)
5 PRK10907 intramembrane serine 99.3 1.4E-11 3E-16 115.1 8.6 168 10-189 92-271 (276)
6 PTZ00101 rhomboid-1 protease; 99.0 5.7E-10 1.2E-14 104.3 6.7 96 10-110 51-156 (278)
7 COG0705 Membrane associated se 99.0 1.6E-09 3.4E-14 97.7 9.2 172 11-186 16-209 (228)
8 PF01694 Rhomboid: Rhomboid fa 98.8 1.8E-09 3.9E-14 89.7 1.6 134 48-186 2-140 (145)
9 KOG4463 Uncharacterized conser 98.4 4E-07 8.6E-12 83.8 6.9 189 6-208 6-218 (323)
10 KOG2289 Rhomboid family protei 97.5 5.5E-05 1.2E-09 72.1 2.5 137 42-192 109-258 (316)
11 KOG2890 Predicted membrane pro 97.4 0.00043 9.2E-09 65.3 6.9 176 9-191 22-222 (326)
12 PF08551 DUF1751: Eukaryotic i 95.3 0.011 2.4E-07 47.1 2.2 55 51-109 7-61 (99)
13 KOG2290 Rhomboid family protei 74.6 0.92 2E-05 45.6 -0.2 38 50-88 449-486 (652)
14 KOG2980 Integral membrane prot 56.0 40 0.00087 32.3 6.8 141 5-152 108-257 (310)
15 PF11169 DUF2956: Protein of u 28.7 39 0.00084 27.3 1.8 17 148-164 79-95 (103)
16 cd08788 CARD_NOD2_2_CARD15 Cas 21.7 73 0.0016 24.7 2.1 26 224-249 26-51 (81)
17 PF06042 DUF925: Bacterial pro 21.3 54 0.0012 28.6 1.4 35 243-288 73-110 (163)
No 1
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=5.1e-57 Score=404.51 Aligned_cols=206 Identities=44% Similarity=0.866 Sum_probs=197.9
Q ss_pred CChHHHHhccchHHHHHHHHHHHHHHHHHhCccccceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhH
Q 022636 2 SSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGV 81 (294)
Q Consensus 2 ~~~~~~~~~IPPVTR~ll~~~v~vtll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~ 81 (294)
+.+.+|+.+||||||+++++|+++++++++++++|.+++++|++|+||+|+||++|+++++|++++++++||+++|+||+
T Consensus 3 ~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~ 82 (239)
T KOG0858|consen 3 MDLLNFYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSS 82 (239)
T ss_pred hhHHHHHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCcchhHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhcCCCceEEEEEEeeeccccHHHHHHHH
Q 022636 82 NLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLAL 161 (294)
Q Consensus 82 ~LE~~~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~ylP~~lL~~ 161 (294)
+||+..|+++++||+++++++++++.+.+. +.+.++|+.++.++++|+|||+||+.+|+++|++++||+|+||+++++
T Consensus 83 ~LE~g~f~~rtadf~~mllf~~~l~~~~~~--~~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvll~f 160 (239)
T KOG0858|consen 83 MLEEGSFRGRTADFLYMLLFGAVLLTLTGL--FVYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVLLGF 160 (239)
T ss_pred HHhcCCCCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHHHHH
Confidence 999999999999999999999998887765 367889999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchhhhHHhhhhHHHhhhhhcccC-CCCCCcccChHHHHHHHh
Q 022636 162 DVIFGSPLVPDLLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVYPYFY 209 (294)
Q Consensus 162 ~~l~~~s~~~~l~GilvGhlY~fL~~v~P~-~~g~~~l~tP~~l~~l~~ 209 (294)
+++.+++.+.|++||++||+|+|++|++|. .+|++++|||+|+++++.
T Consensus 161 s~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~ 209 (239)
T KOG0858|consen 161 SFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFA 209 (239)
T ss_pred HHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcC
Confidence 999999889999999999999999999999 577999999999999993
No 2
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=100.00 E-value=5.1e-50 Score=355.86 Aligned_cols=192 Identities=47% Similarity=0.946 Sum_probs=181.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhCccccceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCCCCC
Q 022636 11 LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFER 90 (294)
Q Consensus 11 IPPVTR~ll~~~v~vtll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~f~~ 90 (294)
||||||+++++++++++++.+|+++|.+++++|+++++++|+||++|++|++|+.+++++++++++|++|++||+++|++
T Consensus 1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~ 80 (197)
T PF04511_consen 1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQG 80 (197)
T ss_pred CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhh---ccccchHHHHHHHHHHHhhhcCCCceEEEEEEeeeccccHHHHHHHHHHHhCC
Q 022636 91 RTADFLWMMIFGALSLLVLSAIPI---FRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS 167 (294)
Q Consensus 91 ~~~dyl~~ll~~~~~i~l~a~~~~---~~~~fLg~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~ylP~~lL~~~~l~~~ 167 (294)
+++||+|+++++++++.+++.+.. .+.+++++++.++++|+|||+||+.+|+++|++++|++|+||+++++++++++
T Consensus 81 ~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~~~l~~~ 160 (197)
T PF04511_consen 81 RSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAFSLLFGG 160 (197)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHHHHHhCC
Confidence 999999999999998888876421 34578999999999999999999999999999999999999999999999998
Q ss_pred -CchhhhHHhhhhHHHhhhhhcccCC-CCCCcccChH
Q 022636 168 -PLVPDLLGIIAGHLYYFLTVLHPLA-TGKNLLKTPK 202 (294)
Q Consensus 168 -s~~~~l~GilvGhlY~fL~~v~P~~-~g~~~l~tP~ 202 (294)
+...|++|+++||+|+|++|++|+. +|+|++|||+
T Consensus 161 ~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~ 197 (197)
T PF04511_consen 161 SSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ 197 (197)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence 7799999999999999999999996 6899999995
No 3
>COG5291 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.5e-41 Score=300.11 Aligned_cols=201 Identities=26% Similarity=0.575 Sum_probs=184.2
Q ss_pred HHHhc---cchHHHHHHHHHHHHHHHHHhCccccceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHH
Q 022636 6 EYYHS---LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVN 82 (294)
Q Consensus 6 ~~~~~---IPPVTR~ll~~~v~vtll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~ 82 (294)
+.+.+ ||||||+++++..++++++.+++++|.++++.|++++|+.|+||++||+.++++..+++++++|++|+||++
T Consensus 11 ~llg~~~~IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~ 90 (313)
T COG5291 11 FLLGQMLRIPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRM 90 (313)
T ss_pred hhhcccccCCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence 44444 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCcchhHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhcCCCceEEEEEEeeeccccHHHHHHHHH
Q 022636 83 LEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALD 162 (294)
Q Consensus 83 LE~~~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~ylP~~lL~~~ 162 (294)
||+.+|+.+-.||+||+++++.++..++.+ +.+...|++++..++.|+|+++||+.++.+||+|++++||+|+++++++
T Consensus 91 LE~g~f~~~lv~Y~~yl~~~~l~i~a~s~I-~gg~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP~Illgfs 169 (313)
T COG5291 91 LEEGCFNTSLVEYFWYLLVISLVIFAISNI-YGGISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFS 169 (313)
T ss_pred HhccccCccHHHHHHHHHHHHHHHHHHHHH-hcchhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhhHHHHHHH
Confidence 999999877779999999999888877765 3446678999999999999999999999999999999999999999999
Q ss_pred HHhC-CCchhhhHHhhhhHHHhhhhhcccCCCCCCcccChHHHHHHH
Q 022636 163 VIFG-SPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYF 208 (294)
Q Consensus 163 ~l~~-~s~~~~l~GilvGhlY~fL~~v~P~~~g~~~l~tP~~l~~l~ 208 (294)
++.+ +....+++|+.+||...++.++||.+ |++...||.|.++++
T Consensus 170 fl~~~g~~i~~vlGf~~g~~~h~~g~I~~mi-~r~~~~t~~~~~~~~ 215 (313)
T COG5291 170 FLSRRGISIDDVLGFVVGHLFHYFGDIYPMI-GRDILSTPCWVKKLF 215 (313)
T ss_pred HHhcCCccceeeeeeeeccccccccchhhhh-hcccCCCcccccccc
Confidence 9998 56699999999999999999999987 466777777777754
No 4
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.71 E-value=5.1e-17 Score=148.36 Aligned_cols=178 Identities=17% Similarity=0.280 Sum_probs=137.7
Q ss_pred ChHHHHhccchHHHHHHHHHHHHHHHHHhCccccceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHH
Q 022636 3 SPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVN 82 (294)
Q Consensus 3 ~~~~~~~~IPPVTR~ll~~~v~vtll~~~g~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~ 82 (294)
...+++..+|++|-.++..+.++.+...+..+. ...+.+...+++.|+||++|+.++|.+ -+|++|||..++..++.
T Consensus 6 ~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s-~~hllfnmlaL~~~g~~ 82 (258)
T KOG2632|consen 6 RVGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLS-LPHLLFNMLALWPLGSQ 82 (258)
T ss_pred cCccccccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHhchhH
Confidence 567889999999999999999998888765444 455666777788999999999999988 89999999999999999
Q ss_pred hccCCCCCCcchhHHHHHHHHHHH---HHHHhhhhc--ccc----chH-HHHHHHHHHHhhhcCCCceEEEEEEeeeccc
Q 022636 83 LEKGPFERRTADFLWMMIFGALSL---LVLSAIPIF--RSY----FLG-ISLVFMLVYVWSREFPNSQINIYGLVTLKAF 152 (294)
Q Consensus 83 LE~~~f~~~~~dyl~~ll~~~~~i---~l~a~~~~~--~~~----fLg-~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~ 152 (294)
+|+.+. .+..++.+..+.++.- .++....+. +.. .-| +...+++.-+-+-+.|....+++|++++|++
T Consensus 83 fE~~~G--~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~ 160 (258)
T KOG2632|consen 83 FERTHG--TTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIV 160 (258)
T ss_pred HHhhcc--ceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHH
Confidence 999984 2556666655443321 111111111 111 112 4566777777788899999999999999999
Q ss_pred cHHHHHHHHH-HHhCC-CchhhhHHhhhhHHHhhh
Q 022636 153 YLPWAMLALD-VIFGS-PLVPDLLGIIAGHLYYFL 185 (294)
Q Consensus 153 ylP~~lL~~~-~l~~~-s~~~~l~GilvGhlY~fL 185 (294)
+.||++++.. +++++ |++.|++|+++|+.|-+.
T Consensus 161 l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 161 LAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 9999998884 77765 789999999999999884
No 5
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.26 E-value=1.4e-11 Score=115.11 Aligned_cols=168 Identities=20% Similarity=0.259 Sum_probs=105.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHhCcccc--ceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCC
Q 022636 10 SLPPICKAYGTLCVAVATVCSLGLLDL--SILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGP 87 (294)
Q Consensus 10 ~IPPVTR~ll~~~v~vtll~~~g~i~p--~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~ 87 (294)
+-.|+|-.++++|+++.++..++.... ..+.+.. ....++|+||++|+.|.|++ .+|++|||++++..|+.+|+..
T Consensus 92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~-~~~~~~q~WRl~T~~flH~~-~~Hl~fNml~l~~lG~~iE~~~ 169 (276)
T PRK10907 92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPF-DPSLKFELWRYFTHALLHFS-LLHILFNLLWWWYLGGAVEKRL 169 (276)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccc-cccccCCcHHHHhHHHHhCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999876543222 1222222 22346899999999999998 8999999999999999999986
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHhhhhccccchH--HHHHHHHHHHh--hhcCCCceEEEEEEeeeccccHHHHHH----
Q 022636 88 FERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG--ISLVFMLVYVW--SREFPNSQINIYGLVTLKAFYLPWAML---- 159 (294)
Q Consensus 88 f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg--~~l~~al~Yiw--sr~nP~~~v~lfGli~i~a~ylP~~lL---- 159 (294)
++..|+...+++++...+...+ +.+..+.| .++...+.|.| .++.|+..+. +|..++.++.+
T Consensus 170 ---G~~~~l~l~l~s~i~~~~~~~~-~~~~~~gGaSGvVygL~g~~~~~~~~~p~~~~~------lp~~~~~f~llwl~~ 239 (276)
T PRK10907 170 ---GSGKLIVITLISALLSGWVQSK-FSGPWFGGLSGVVYALMGYVWLRGERDPQSGIY------LPRGLIAFALLWLVA 239 (276)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHH-HccchhhHHHHHHHHHHHHHHHHhccccccchh------hhHHHHHHHHHHHHH
Confidence 3456766555555443333322 22334433 34444456766 3445654332 22222232221
Q ss_pred HHHHHhCCCc--hhhhHHhhhhHHHhhhhhcc
Q 022636 160 ALDVIFGSPL--VPDLLGIIAGHLYYFLTVLH 189 (294)
Q Consensus 160 ~~~~l~~~s~--~~~l~GilvGhlY~fL~~v~ 189 (294)
++.-+.+.++ .+|+.|.++|.+.-+++...
T Consensus 240 g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~~ 271 (276)
T PRK10907 240 GYFDLFGMSIANAAHVAGLAVGLAMAFWDTRN 271 (276)
T ss_pred HHHHccCcccHHHHHHHHHHHHHHHHHHhhhh
Confidence 1111223333 89999999999988876443
No 6
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.00 E-value=5.7e-10 Score=104.35 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=70.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHh-C---ccccc-----ee-eeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHH
Q 022636 10 SLPPICKAYGTLCVAVATVCSL-G---LLDLS-----IL-ALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARY 79 (294)
Q Consensus 10 ~IPPVTR~ll~~~v~vtll~~~-g---~i~p~-----~L-~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~ 79 (294)
++|.+|.+++++.+++.++... + ...|. ++ .++++.+ +++|+||++|+.|.|++ .+|+++||++++..
T Consensus 51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~-~~HLl~Nm~~l~~~ 128 (278)
T PTZ00101 51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHAN-IFHTFFNVFFQLRM 128 (278)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccC-HHHHHHHHHHHHHH
Confidence 6889999999999998887644 2 12232 12 2345555 56899999999999988 89999999999999
Q ss_pred hHHhccCCCCCCcchhHHHHHHHHHHHHHHH
Q 022636 80 GVNLEKGPFERRTADFLWMMIFGALSLLVLS 110 (294)
Q Consensus 80 s~~LE~~~f~~~~~dyl~~ll~~~~~i~l~a 110 (294)
|..+|+... +..|+...++++++..+++
T Consensus 129 G~~lE~~~G---~~r~~ilYl~sGi~G~l~s 156 (278)
T PTZ00101 129 GFTLEKNYG---IVKIIILYFLTGIYGNILS 156 (278)
T ss_pred HHHHHHHHC---hHHHHHHHHHHHHHHHHHH
Confidence 999999973 4557644444444444444
No 7
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.00 E-value=1.6e-09 Score=97.69 Aligned_cols=172 Identities=23% Similarity=0.246 Sum_probs=122.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhCccccce--------eeeeHHHHhhcc---ceeeeeeeccccCcccHHHHHHHHHHHHH
Q 022636 11 LPPICKAYGTLCVAVATVCSLGLLDLSI--------LALEYKLVFSKF---QVWRLITNFFFLGTFSINFGIRLLMIARY 79 (294)
Q Consensus 11 IPPVTR~ll~~~v~vtll~~~g~i~p~~--------L~l~~~~v~~~~---QiWRLiTs~f~~g~~~l~llf~m~~l~~~ 79 (294)
.|++|+.++..++++.+........... ..+.+....... |+||++|+.|.|++ -.|+++||+.++.+
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~-~~Hll~N~~~l~~f 94 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAG-FLHLLFNMLALWVF 94 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence 4899999999999999887643222110 112222222222 89999999999999 89999999999999
Q ss_pred hHHhccCCCCCCcchhHHHHHHHHHHHHHHHhhhhcc--ccchH-HHHHHHHHHHhhhcCCCceEEEEEE-eeeccccHH
Q 022636 80 GVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFR--SYFLG-ISLVFMLVYVWSREFPNSQINIYGL-VTLKAFYLP 155 (294)
Q Consensus 80 s~~LE~~~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~--~~fLg-~~l~~al~Yiwsr~nP~~~v~lfGl-i~i~a~ylP 155 (294)
+..+|+... +..|+.+.+.+++...+........ .+.+| ++.++.++-.++...|..++..... ++.++..+-
T Consensus 95 g~~le~~~G---~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i 171 (228)
T COG0705 95 GSNLERRLG---TLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILI 171 (228)
T ss_pred hHHHHHHhc---hhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHH
Confidence 999999973 4457776666665554443321111 24455 5678888888899999988887754 567766766
Q ss_pred HHHHHHHHHhCC-C------chhhhHHhhhhHHHhhhh
Q 022636 156 WAMLALDVIFGS-P------LVPDLLGIIAGHLYYFLT 186 (294)
Q Consensus 156 ~~lL~~~~l~~~-s------~~~~l~GilvGhlY~fL~ 186 (294)
.+.++.+++++. + ...|+.|++.|.+|..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~ 209 (228)
T COG0705 172 LIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALL 209 (228)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777652 2 489999999999988654
No 8
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=98.79 E-value=1.8e-09 Score=89.71 Aligned_cols=134 Identities=25% Similarity=0.295 Sum_probs=78.2
Q ss_pred hccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCCCCCCcchhHHHHHHHHHHHHHHHhhhhccc-cchH-HHHH
Q 022636 48 SKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRS-YFLG-ISLV 125 (294)
Q Consensus 48 ~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~-~fLg-~~l~ 125 (294)
+++|+||++|+.|.|.+ ..|+++|++.++.++..+|+... +.++....+.++++..+......... +..| ++.+
T Consensus 2 ~~~~~wrl~T~~f~h~~-~~hl~~n~~~l~~~g~~lE~~~G---~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~ 77 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHAN-FLHLLFNLLALWFFGSLLERRLG---SRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAV 77 (145)
T ss_dssp GCC-TTHHHHGGG--SS-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHH
T ss_pred CCCcchhhhHHHHHccC-HHHHHHHHHHHHHhhhhHhhhcc---chHHHHHHHHHHHhhhhccccccccccccCCCcccc
Confidence 57899999999999988 99999999999999999999963 44565555555444444333211111 2333 4455
Q ss_pred HHHHHHhhhcCCCceEE---EEEEeeeccccHHHHHHHHHHHhCCCchhhhHHhhhhHHHhhhh
Q 022636 126 FMLVYVWSREFPNSQIN---IYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLT 186 (294)
Q Consensus 126 ~al~Yiwsr~nP~~~v~---lfGli~i~a~ylP~~lL~~~~l~~~s~~~~l~GilvGhlY~fL~ 186 (294)
++++-..+...|..+.. .+..+.+...++++.++... ....+...|+.|+++|.+|.+.-
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~ 140 (145)
T PF01694_consen 78 FGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLI 140 (145)
T ss_dssp HHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444433211 12233444444443333222 22235699999999999988754
No 9
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=4e-07 Score=83.79 Aligned_cols=189 Identities=20% Similarity=0.344 Sum_probs=114.3
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHhCccccceeeeeHHHHhhc-cceeeeeeeccccCcccHHHHHHHHHHHHHhHHhc
Q 022636 6 EYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSK-FQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLE 84 (294)
Q Consensus 6 ~~~~~IPPVTR~ll~~~v~vtll~~~g~i~p~~L~l~~~~v~~~-~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE 84 (294)
.-+.++| |||.+++.+.++++.....-.++ .+.++++.++.+ +|+||++-+-|.+-. .-+.++.++.+| +.+.+|
T Consensus 6 ~g~~nmp-VTK~~~iT~~~~~vvagI~~~k~-~f~l~y~~~l~~y~qywrlL~~qF~~~n-~~e~~~~l~I~Y-~fR~~E 81 (323)
T KOG4463|consen 6 SGFHNMP-VTKAFVITSALFTVVAGIQGRKS-KFGLSYQDILEKYFQYWRLLMSQFAFSN-TPELMFGLYILY-YFRVFE 81 (323)
T ss_pred Ccccccc-hHHHHHHHHHHHHHHHHhhhccc-ccccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHH-HHHHHH
Confidence 3455665 99999999888888776544444 467778777765 899999999998866 889999999999 778999
Q ss_pred cCCCCCCcchhHHHHHHHHHHHH----HHHhhh---hccccchH-HHHHHHHHHHhhhcCCC-ceEEEEEEeeeccc---
Q 022636 85 KGPFERRTADFLWMMIFGALSLL----VLSAIP---IFRSYFLG-ISLVFMLVYVWSREFPN-SQINIYGLVTLKAF--- 152 (294)
Q Consensus 85 ~~~f~~~~~dyl~~ll~~~~~i~----l~a~~~---~~~~~fLg-~~l~~al~Yiwsr~nP~-~~v~lfGli~i~a~--- 152 (294)
+...+. +|+.++++..+... +++.+. .-+.-.+. .+++++..|-+--.-|- .-+.+||+ ++..|
T Consensus 82 RlLGSh---ky~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~~qp~~liFa~~~~~y~~ip~~~f~r~f~~-~f~dkni~ 157 (323)
T KOG4463|consen 82 RLLGSH---KYSVFIVFSGTVSLLLEVILLSLLKDTTANLLTSQPYGLIFASFIPFYLDIPVSTFFRVFGV-NFSDKNIS 157 (323)
T ss_pred HHhccc---cceeehhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeeeeccceEEEecceeEEEeecc-ccccccee
Confidence 997544 46555555543322 222210 01111111 13566666554444453 33455653 55555
Q ss_pred cHHHHHHHHHHHhC-----------CCchhhhHHhhhhHHHhhhhhcccCCCCCCcccChHHHHHHH
Q 022636 153 YLPWAMLALDVIFG-----------SPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVYPYF 208 (294)
Q Consensus 153 ylP~~lL~~~~l~~-----------~s~~~~l~GilvGhlY~fL~~v~P~~~g~~~l~tP~~l~~l~ 208 (294)
.+|..=++++.-.. -+....+.|++.||+|.. ...|..--++|.++-..+
T Consensus 158 ~i~~~G~a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~------~~agi~~~~~~~~~~~f~ 218 (323)
T KOG4463|consen 158 FIYLAGVALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRL------NIAGIRKAKFPEFVASFF 218 (323)
T ss_pred eecccchhhhcCcccccccccceeecccccccchhhhhhHhhc------ccccccccccHHHHHhhh
Confidence 23333233322221 123566889999999976 233444445666665544
No 10
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=97.49 E-value=5.5e-05 Score=72.08 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=82.2
Q ss_pred eHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCCCCCCcchhHHHHHHHHHHHHHHHhhhhccccchH
Q 022636 42 EYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG 121 (294)
Q Consensus 42 ~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg 121 (294)
.+....++.|+||++|+.+.|.+ -+|+++||......|-.||+.+..-| =.+.|++ +++.-.+++.+.--+.+..|
T Consensus 109 ~i~~~~~r~E~WRllTym~LHaG-i~HL~~N~~~ql~iGi~LE~~~G~~R--iglIYl~-gg~aGSlls~l~d~~~~sVG 184 (316)
T KOG2289|consen 109 LIYKPVHRGELWRLLTYMWLHAG-IFHLLLNMLSQLFIGIPLEQVHGFLR--IGLIYLA-GGVAGSLLSSLFDPNSISVG 184 (316)
T ss_pred eecChhhhchhHHHHHHHHHhcC-HHHHHHHHHHHHhccccHHhhcCceE--Eeeehhh-hhhhhHHHHHHhccCCceec
Confidence 34455677999999999999998 89999999999999999999973222 2333333 33333333332111121221
Q ss_pred ---------HHHHHHHHHHhhhcCCCceEEEEEEeeeccccHHHHHHHHHHHhCC----CchhhhHHhhhhHHHhhhhhc
Q 022636 122 ---------ISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS----PLVPDLLGIIAGHLYYFLTVL 188 (294)
Q Consensus 122 ---------~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~ylP~~lL~~~~l~~~----s~~~~l~GilvGhlY~fL~~v 188 (294)
.+.+..++--|........ +.-.-.+++++++-+|. +.+.|+.|.+.|-.+-|+.-+
T Consensus 185 ASggvfaLlgA~Ls~l~~Nw~~m~~~~~----------~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~ 254 (316)
T KOG2289|consen 185 ASGGVFALLGAHLSNLLTNWTIMKNKFA----------ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHI 254 (316)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHhcchHH----------HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhh
Confidence 3444445555654432221 11112223344555552 337888899999888888766
Q ss_pred ccCC
Q 022636 189 HPLA 192 (294)
Q Consensus 189 ~P~~ 192 (294)
-|..
T Consensus 255 ~g~~ 258 (316)
T KOG2289|consen 255 GGQL 258 (316)
T ss_pred ccce
Confidence 6654
No 11
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=97.39 E-value=0.00043 Score=65.26 Aligned_cols=176 Identities=19% Similarity=0.159 Sum_probs=112.9
Q ss_pred hccchHHHHHHHHHHHHHHHHHhC-----ccccceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHh
Q 022636 9 HSLPPICKAYGTLCVAVATVCSLG-----LLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNL 83 (294)
Q Consensus 9 ~~IPPVTR~ll~~~v~vtll~~~g-----~i~p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~L 83 (294)
.+.-++-++++...+...+.+..+ ...| .+.+-+..++ +++|+++|+.|+ +..-++.++++..+.-.|+.+
T Consensus 22 ~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p-~y~lvp~~~~--~~~WtliTs~fi-e~~vw~V~~sv~~L~v~G~~l 97 (326)
T KOG2890|consen 22 LNLEVVVSAICVLTLFGYILSFGNFTILLATLP-GYQLVPNALF--FFPWTLITSGFI-ELNVWDVLVSVLTLSVGGKFL 97 (326)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHhHHHHHhcc-ccccCCcchh--hhhHHHHhcchh-hhhHHHHHHHHHheeecceee
Confidence 334445556665555444444321 1223 2333454444 599999999987 444899999999999999999
Q ss_pred ccCCCCCCcchhHHHHHHHHHHH----HHHHhhhh--c-c-----ccchH-HHHHHHHHHHhhhcCCCceEEEEEEeeec
Q 022636 84 EKGPFERRTADFLWMMIFGALSL----LVLSAIPI--F-R-----SYFLG-ISLVFMLVYVWSREFPNSQINIYGLVTLK 150 (294)
Q Consensus 84 E~~~f~~~~~dyl~~ll~~~~~i----~l~a~~~~--~-~-----~~fLg-~~l~~al~Yiwsr~nP~~~v~lfGli~i~ 150 (294)
|.... +.+++.+..+..+.. .+.+.+.+ . + .++-| .+.+..++.+|-+..|+..+.---.-.+.
T Consensus 98 Ep~Wg---~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r~~ 174 (326)
T KOG2890|consen 98 EPNWG---SLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSGRFL 174 (326)
T ss_pred ccCCC---CHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccchhhh
Confidence 99983 445555544432221 11222111 1 1 23334 57888999999999999988654233444
Q ss_pred cccHHHHHHHHHHHhC-------CCchhhhHHhhhhHHHhhhhhcccC
Q 022636 151 AFYLPWAMLALDVIFG-------SPLVPDLLGIIAGHLYYFLTVLHPL 191 (294)
Q Consensus 151 a~ylP~~lL~~~~l~~-------~s~~~~l~GilvGhlY~fL~~v~P~ 191 (294)
.+-+|...++++++.. .++..-..|..++..|..+....|.
T Consensus 175 ~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~~ 222 (326)
T KOG2890|consen 175 YAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHPT 222 (326)
T ss_pred hhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCCc
Confidence 4558988777766543 3456677899999999988877773
No 12
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=95.31 E-value=0.011 Score=47.13 Aligned_cols=55 Identities=24% Similarity=0.188 Sum_probs=45.5
Q ss_pred ceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCCCCCCcchhHHHHHHHHHHHHHH
Q 022636 51 QVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVL 109 (294)
Q Consensus 51 QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~f~~~~~dyl~~ll~~~~~i~l~ 109 (294)
.+|+++|+.|+..+ .+.++++...+...|+.+|+... +.+++.|+++..+...++
T Consensus 7 ~pWtl~T~~fve~~-i~~~l~~~~~l~~~g~~lE~~WG---s~E~lkFi~vv~~~tnl~ 61 (99)
T PF08551_consen 7 YPWTLFTAGFVETN-IIGLLFSLLTLFYGGRYLEPIWG---SREFLKFILVVNVITNLL 61 (99)
T ss_pred ehHHHHHHHHHHhH-HHHHHHHHHHHHHhhHHHHHhcC---hHHHHHHHHHHHHHhHHH
Confidence 79999999998765 89999999999999999999984 568888877766544433
No 13
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=74.60 E-value=0.92 Score=45.56 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=34.4
Q ss_pred cceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCCC
Q 022636 50 FQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPF 88 (294)
Q Consensus 50 ~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~f 88 (294)
-|++||.||.|.|.+ .+|.+..+.+=+...+.||+-..
T Consensus 449 dQfYRL~~SLFlHag-viH~~vSi~FQm~vmrdlEkL~g 486 (652)
T KOG2290|consen 449 DQFYRLWLSLFLHAG-VIHLLVSICFQMTVMRDLEKLAG 486 (652)
T ss_pred hHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 399999999999988 89999999998889999999764
No 14
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=55.95 E-value=40 Score=32.31 Aligned_cols=141 Identities=14% Similarity=0.150 Sum_probs=80.2
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhCccc---cceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhH
Q 022636 5 AEYYHSLPPICKAYGTLCVAVATVCSLGLLD---LSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGV 81 (294)
Q Consensus 5 ~~~~~~IPPVTR~ll~~~v~vtll~~~g~i~---p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~ 81 (294)
..|.+-.|-+.-.+++.++.+..+-...-.. -.++. .+.+ ++.-.|-++++.|-|-. .+|+-.+|+.+..|..
T Consensus 108 k~w~~~~~g~v~~ll~~n~~vf~lWrv~~~~~~~~~~ml--s~~~-~~t~~w~i~~s~Fsh~~-a~h~g~~~~~~~~y~~ 183 (310)
T KOG2980|consen 108 KHWISGANGVVFGLLIANAFVFTLWRVPQKQFTMIPWML--SRNA-YKTGCWKIILSTFSHYS-ALHLGPNMLVLKSYLA 183 (310)
T ss_pred HHHhhcCCcchhHHHHHHHHHHHHHHhcchhhhhhhHHh--hccc-ccccceeEEeehhcchh-HhhhcHHHHHHHHHhc
Confidence 3455556653344455555566665443221 11121 1222 34578999999976655 7898888888888886
Q ss_pred -HhccCCCCCCcchhHHHHHHHHHHHHHHHhhh----hccccchH-HHHHHHHHHHhhhcCCCceEEEEEEeeeccc
Q 022636 82 -NLEKGPFERRTADFLWMMIFGALSLLVLSAIP----IFRSYFLG-ISLVFMLVYVWSREFPNSQINIYGLVTLKAF 152 (294)
Q Consensus 82 -~LE~~~f~~~~~dyl~~ll~~~~~i~l~a~~~----~~~~~fLg-~~l~~al~Yiwsr~nP~~~v~lfGli~i~a~ 152 (294)
.+-...+. ..-+..|+ ........+.... ..-.|.|| ++-++++.-+.|-.+|+.+..+..++++|+-
T Consensus 184 ~a~~~~~~~--~~~~Alyl-Sa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~g 257 (310)
T KOG2980|consen 184 GALKGSLGF--SSFFALYL-SAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAG 257 (310)
T ss_pred ccccCCcch--hhccccee-ccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeeccccc
Confidence 66655422 22233443 1111111111110 01134555 4567788888899999999998888899884
No 15
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=28.69 E-value=39 Score=27.30 Aligned_cols=17 Identities=35% Similarity=0.825 Sum_probs=14.1
Q ss_pred eeccccHHHHHHHHHHH
Q 022636 148 TLKAFYLPWAMLALDVI 164 (294)
Q Consensus 148 ~i~a~ylP~~lL~~~~l 164 (294)
.-...+|||++|++|++
T Consensus 79 ~~~~~~LPW~LL~lSW~ 95 (103)
T PF11169_consen 79 QSRSSWLPWGLLVLSWI 95 (103)
T ss_pred cccccchhHHHHHHHHH
Confidence 45567999999999995
No 16
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=21.73 E-value=73 Score=24.67 Aligned_cols=26 Identities=31% Similarity=0.198 Sum_probs=21.4
Q ss_pred CCCCCCccCCCccccCCCcchhhhhh
Q 022636 224 PGHSAGCVKPNIIRDIFPLSTQARAH 249 (294)
Q Consensus 224 ~~~~~g~~~~~~~~~~~~~~~~~~~~ 249 (294)
.|.-+.....+++..+++|+-|||.-
T Consensus 26 ~G~is~~Ecd~Ir~p~~T~sqqARrL 51 (81)
T cd08788 26 RGFFSSYDCDEIRLPIFTPSQQARRL 51 (81)
T ss_pred cCCccHhhcchhhcCCCChHHHHHHH
Confidence 56667777888888899999999974
No 17
>PF06042 DUF925: Bacterial protein of unknown function (DUF925); InterPro: IPR009267 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2LA3_A.
Probab=21.26 E-value=54 Score=28.58 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=22.5
Q ss_pred chhhhhhccc---CCcchhhhHHhhhhcCcccccccCCCcccceeeecc
Q 022636 243 STQARAHTHT---HTHTHTQKLVARWRIGAPAINRAQPERTTGVAFRGR 288 (294)
Q Consensus 243 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (294)
-+|||-|.+- .+.+.+..-+++| ||..|.|+.|-.
T Consensus 73 kNQArmHl~~~~~~py~S~~dAi~~w-----------pe~~Tavgvrl~ 110 (163)
T PF06042_consen 73 KNQARMHLWNGDKPPYTSTEDAISRW-----------PETATAVGVRLN 110 (163)
T ss_dssp EESTTTTSSSSS----SSHHHHHTTS-----------SSTTTS-EEE--
T ss_pred EeeeeeeeecCCCCCcccHHHHHHhc-----------chhheEEEEEEC
Confidence 5899998765 4566777777777 788887777643
Done!