Query 022636
Match_columns 294
No_of_seqs 158 out of 640
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:40:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.6 4.8E-15 1.7E-19 128.5 7.2 167 10-186 2-178 (181)
2 2nr9_A Protein GLPG homolog; i 99.4 7.5E-13 2.6E-17 116.1 6.6 167 9-186 6-183 (196)
3 2la3_A Uncharacterized protein 16.7 56 0.0019 27.9 1.8 33 243-286 96-131 (191)
4 2l08_A Regulator of nonsense t 10.2 39 0.0013 25.9 -1.1 14 251-264 2-15 (97)
5 1zmi_A Neutrophil defensin 2; 9.3 85 0.0029 18.5 0.4 17 276-292 10-27 (29)
6 2jpk_A Bacteriocin lactococcin 9.2 1.5E+02 0.0053 18.1 1.6 17 150-166 2-18 (35)
7 3dtd_A Invasion-associated pro 8.9 81 0.0028 26.3 0.4 13 245-257 163-175 (175)
8 2k1i_A Mucosal alpha-defensin; 6.8 1.2E+02 0.0042 18.2 0.4 17 276-292 12-29 (32)
9 1zmm_A Neutrophil defensin 4; 5.9 1.4E+02 0.0048 18.0 0.3 17 276-292 11-28 (33)
10 2kgr_A Intersectin-1; structur 5.4 2.6E+02 0.0091 20.5 1.7 20 236-255 91-110 (111)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.55 E-value=4.8e-15 Score=128.46 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=110.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHhCccc--cceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccCC
Q 022636 10 SLPPICKAYGTLCVAVATVCSLGLLD--LSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGP 87 (294)
Q Consensus 10 ~IPPVTR~ll~~~v~vtll~~~g~i~--p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~~ 87 (294)
+.||+|+.++++|+++.++....-.. ..++.++++. .+++|+||++|+.|.|++ .+|+++||+.++.+|+.+|+..
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~-~~Hl~~Nm~~l~~~g~~~E~~~ 79 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKRL 79 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999987653211 1234455554 456899999999999998 6999999999999999999986
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHhhhhccccchH-HHHHHHH-HH--HhhhcCCCceEEEEEEeeeccccHHHHHHHHHH
Q 022636 88 FERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFML-VY--VWSREFPNSQINIYGLVTLKAFYLPWAMLALDV 163 (294)
Q Consensus 88 f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg-~~l~~al-~Y--iwsr~nP~~~v~lfGli~i~a~ylP~~lL~~~~ 163 (294)
++.+|+.+.+.+++...+.+.+ +.+.+..| ++.++++ .+ +.++++|+.++. ++.+...+-.+.+++++
T Consensus 80 ---G~~~fl~~yl~~~i~~~l~~~~-~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~~~~~~~~~~~ 151 (181)
T 2xov_A 80 ---GSGKLIVITLISALLSGYVQQK-FSGPWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLIIFALIWIVAGW 151 (181)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHHHHHHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHH-hcCCCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHHHHHHHHHHHH
Confidence 3567877766666555544433 22222333 3223222 22 346788887653 23333222222333444
Q ss_pred Hh----CCCchhhhHHhhhhHHHhhhh
Q 022636 164 IF----GSPLVPDLLGIIAGHLYYFLT 186 (294)
Q Consensus 164 l~----~~s~~~~l~GilvGhlY~fL~ 186 (294)
.. +-+...|+.|+++|.++.++.
T Consensus 152 ~~~~~~~v~~~aHlgG~l~G~l~~~~~ 178 (181)
T 2xov_A 152 FDLFGMSMANGAHIAGLAVGLAMAFVD 178 (181)
T ss_dssp TTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHH
Confidence 33 224599999999999987653
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.35 E-value=7.5e-13 Score=116.06 Aligned_cols=167 Identities=16% Similarity=0.242 Sum_probs=109.5
Q ss_pred hccchHHHHHHHHHHHHHHHHHhCccc--cceeeeeHHHHhhccceeeeeeeccccCcccHHHHHHHHHHHHHhHHhccC
Q 022636 9 HSLPPICKAYGTLCVAVATVCSLGLLD--LSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKG 86 (294)
Q Consensus 9 ~~IPPVTR~ll~~~v~vtll~~~g~i~--p~~L~l~~~~v~~~~QiWRLiTs~f~~g~~~l~llf~m~~l~~~s~~LE~~ 86 (294)
.+.||+|+.++++++++.++....-.. ..++.++++.+ .++|+||++|+.|.|++ .+|+++||+.++..|..+|+.
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~-~~Hl~~Nm~~l~~~G~~lE~~ 83 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERT 83 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999987653211 12355666655 56899999999999998 899999999999999999998
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHhhhhccccchH-HHHHHHHH-H--HhhhcCCCceEEEEEEeeeccccHHHHHHHHH
Q 022636 87 PFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFMLV-Y--VWSREFPNSQINIYGLVTLKAFYLPWAMLALD 162 (294)
Q Consensus 87 ~f~~~~~dyl~~ll~~~~~i~l~a~~~~~~~~fLg-~~l~~al~-Y--iwsr~nP~~~v~lfGli~i~a~ylP~~lL~~~ 162 (294)
. ++.+|+.+.+.+++...+.+.+ +.+....| ++.+++++ + +..+++|+. + .++.+...+-.+.++++
T Consensus 84 ~---G~~~~l~~yl~~~~~~~l~~~~-~~~~~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~ 154 (196)
T 2nr9_A 84 F---GSVKLLMLYVVASAITGYVQNY-VSGPAFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFFTMLLVGIALG 154 (196)
T ss_dssp H---CHHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSSTTTTTTTTTHH
T ss_pred H---ChHHHHHHHHHHHHHHHHHHHH-hcCCCeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHHHHHHHHHHHH
Confidence 6 3556766666665554444432 22222333 33333222 2 234566665 1 12444443333334445
Q ss_pred HHhC-----CCchhhhHHhhhhHHHhhhh
Q 022636 163 VIFG-----SPLVPDLLGIIAGHLYYFLT 186 (294)
Q Consensus 163 ~l~~-----~s~~~~l~GilvGhlY~fL~ 186 (294)
++.. -+...|+.|+++|.++.++.
T Consensus 155 ~~~~~~~~~v~~~aHlgG~l~G~l~~~~~ 183 (196)
T 2nr9_A 155 FISPLFGVEMGNAAHISGLIVGLIWGFID 183 (196)
T ss_dssp HHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 5432 24599999999999887654
No 3
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae}
Probab=16.68 E-value=56 Score=27.93 Aligned_cols=33 Identities=30% Similarity=0.566 Sum_probs=23.1
Q ss_pred chhhhhhccc---CCcchhhhHHhhhhcCcccccccCCCcccceeee
Q 022636 243 STQARAHTHT---HTHTHTQKLVARWRIGAPAINRAQPERTTGVAFR 286 (294)
Q Consensus 243 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (294)
-+|||-|.+. .+.+-+..-+.+| ||+.|.|+.|
T Consensus 96 kNQArmHl~~~~~~Py~Ss~dAis~w-----------pe~~TAvGvr 131 (191)
T 2la3_A 96 KNQVYMHQHSPHTASYTSSRDAMSKY-----------PERCTAVGLR 131 (191)
T ss_dssp EESTTTTSSSSSCCCCSSHHHHHTTS-----------SSTTTSCEEE
T ss_pred EeceecccCCCCCCCCcCHHHHHHhc-----------hhhheeEEEE
Confidence 5899988754 3445556666666 7888888777
No 4
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=10.17 E-value=39 Score=25.87 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=11.2
Q ss_pred ccCCcchhhhHHhh
Q 022636 251 HTHTHTHTQKLVAR 264 (294)
Q Consensus 251 ~~~~~~~~~~~~~~ 264 (294)
|.|.|.|..|+|-|
T Consensus 2 ~~~~~~~~~KvVIR 15 (97)
T 2l08_A 2 GHHHHHHSHMVVIR 15 (97)
T ss_dssp CCCCCCCCCCEEEE
T ss_pred CccccccceeEEEe
Confidence 56778899999865
No 5
>1zmi_A Neutrophil defensin 2; alpha-defensin, antimicrobial, D-amino acid substitution, antimicrobial protein; 1.15A {Homo sapiens} PDB: 1zmh_A 1zmk_A* 4du0_A 2kht_A 3gny_A 3go0_A* 1dfn_A 2pm4_A 3lvx_A 3hjd_A 3lo4_A 3h6c_A 3lo1_A 3lo2_A 3loe_A 3lo6_A 3lo9_A 2pm5_A 2pm1_A
Probab=9.26 E-value=85 Score=18.46 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=13.2
Q ss_pred CCCccccee-eecccccc
Q 022636 276 QPERTTGVA-FRGRSYRL 292 (294)
Q Consensus 276 ~~~~~~~~~-~~~~~~~~ 292 (294)
-+||..|.- ..|+.|||
T Consensus 10 ~~Er~~G~C~~~g~~~~l 27 (29)
T 1zmi_A 10 AGERRYATCIYQGRLWAF 27 (29)
T ss_dssp TTCCEEEEEEETTEEEEE
T ss_pred CcccCceEeccCCeeeee
Confidence 478888886 77888876
No 6
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=9.20 E-value=1.5e+02 Score=18.07 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=13.7
Q ss_pred ccccHHHHHHHHHHHhC
Q 022636 150 KAFYLPWAMLALDVIFG 166 (294)
Q Consensus 150 ~a~ylP~~lL~~~~l~~ 166 (294)
|.+||||+.-+..++.+
T Consensus 2 ~~~wl~w~~pay~fi~g 18 (35)
T 2jpk_A 2 KWGWLAWVDPAYEFIKG 18 (35)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CcccccccchHHHHHHH
Confidence 56799999988888754
No 7
>3dtd_A Invasion-associated protein B; structural genomics, PSI-2, Pro structure initiative, NEW YORK structural genomix research consortium; 2.35A {Bartonella henselae}
Probab=8.94 E-value=81 Score=26.27 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=5.0
Q ss_pred hhhhhcccCCcch
Q 022636 245 QARAHTHTHTHTH 257 (294)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (294)
++||.||.|.|.|
T Consensus 163 ~~~~~~~~~~~~~ 175 (175)
T 3dtd_A 163 IALQKEGHHHHHH 175 (175)
T ss_dssp HHHHHC-------
T ss_pred HHHhhccccccCC
Confidence 4899999888876
No 8
>2k1i_A Mucosal alpha-defensin; antimicrobial peptide, rhesus macaque, anti parallel beta sheet, antimicrobial protein; NMR {Synthetic}
Probab=6.76 E-value=1.2e+02 Score=18.17 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=13.0
Q ss_pred CCCccccee-eecccccc
Q 022636 276 QPERTTGVA-FRGRSYRL 292 (294)
Q Consensus 276 ~~~~~~~~~-~~~~~~~~ 292 (294)
-+||..|.- ..|+.|+|
T Consensus 12 ~~Er~~G~C~~~g~~~rl 29 (32)
T 2k1i_A 12 RRESNSGSCNINGRIFSL 29 (32)
T ss_dssp SSSEEEEEEEETTEEEEE
T ss_pred CcccCceEeccCCeeEee
Confidence 478888876 67888875
No 9
>1zmm_A Neutrophil defensin 4; human alpha-defensin, antimicrobial peptide, antimicrobial P; 1.60A {Homo sapiens}
Probab=5.92 E-value=1.4e+02 Score=18.03 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=12.9
Q ss_pred CCCccccee-eecccccc
Q 022636 276 QPERTTGVA-FRGRSYRL 292 (294)
Q Consensus 276 ~~~~~~~~~-~~~~~~~~ 292 (294)
-|||..|.- ..|+.|+|
T Consensus 11 ~~Er~~G~C~~~g~~~rl 28 (33)
T 1zmm_A 11 RTELRVGNCLIGGVSFTY 28 (33)
T ss_dssp TTCEEEEEEEETTEEEEE
T ss_pred CcccCceEeccCCeEEeE
Confidence 478888876 67787775
No 10
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=5.37 E-value=2.6e+02 Score=20.54 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=14.2
Q ss_pred cccCCCcchhhhhhcccCCc
Q 022636 236 IRDIFPLSTQARAHTHTHTH 255 (294)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~ 255 (294)
-.+..+||.+..+-||.|.|
T Consensus 91 p~~l~pps~~~~~~~~~~~~ 110 (111)
T 2kgr_A 91 PPEYIPPSFRRVRLEHHHHH 110 (111)
T ss_dssp CGGGSCTTTTCCCCCCCCCC
T ss_pred CcccCCCccCCCcccccccc
Confidence 46677788887777776654
Done!