BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022637
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 75 ITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLN 134
IT +TL P W++ II + MK EK ++P +++ +++L+
Sbjct: 35 ITVRDFKTLAPRRWLNDTIIEFF-----MKYIEK--STPNTVAFNSFF-------YTNLS 80
Query: 135 FAQAAGFRDRYMSR----LDTCEKIYVPIN-SDGHWYMLVVDISHATATIWDSLESPSRR 189
G R R+M R +D +KI+ PIN + HW + ++D+ T DSL +
Sbjct: 81 ERGYQGVR-RWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNA 139
Query: 190 EKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYV 245
S AIL L + +E++ F ++ C PQQPNG+DCG YV
Sbjct: 140 M-----SFAILTDLQKYVMEESKHTIGEDFDLIHLD-C-----PQQPNGYDCGIYV 184
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 45 ISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMK 104
I+E+ ++ I +F + N E++ + +ITR ++TL W++ +II Y + +
Sbjct: 5 ITEEMEKEIKNVFRNG-NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMER 63
Query: 105 EAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLD--TCEKIYVPINSD 162
EK + S F ++++ A + ++ R+ ++D + + + VPI+
Sbjct: 64 SKEKGLPSVHA-FNTFFFTKLKTAGYQAVK---------RWTKKVDVFSVDILLVPIHLG 113
Query: 163 GHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFL 222
HW + VVD T +DS+ + NE+ IL L+QE+ +F
Sbjct: 114 VHWCLAVVDFRKKNITYYDSMGGIN------NEACRILLQY---LKQESIDKKRKEFDTN 164
Query: 223 NFQI-CRQAGLPQQPNGFDCGYYVMKYMDSPCIV 255
+Q+ +++ +PQQ NG DCG + KY D CI
Sbjct: 165 GWQLFSKKSQIPQQMNGSDCGMFACKYAD--CIT 196
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 31/176 (17%)
Query: 75 ITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLN 134
IT +TL P W++ II + MK EK ++P +++ +++L+
Sbjct: 35 ITVRDFKTLAPRRWLNDTIIEFF-----MKYIEK--STPNTVAFNSFF-------YTNLS 80
Query: 135 FAQAAGFRDRYMSR----LDTCEKIYVPIN-SDGHWYMLVVDISHATATIWDSLESPSRR 189
G R R+M R +D +KI+ PIN + HW + ++D+ T DSL +
Sbjct: 81 ERGYQGVR-RWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNA 139
Query: 190 EKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYV 245
S AIL L + +E++ F ++ C PQQPNG+D G YV
Sbjct: 140 M-----SFAILTDLQKYVMEESKHTIGEDFDLIHLD-C-----PQQPNGYDXGIYV 184
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 45 ISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMK 104
I+E+ ++ I +F + N E++ + +ITR ++TL W++ +II Y + +
Sbjct: 17 ITEEMEKEIKNVFRNG-NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMER 75
Query: 105 EAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLD--TCEKIYVPINSD 162
EK + S F ++++ A + ++ R+ ++D + + + VPI+
Sbjct: 76 SKEKGLPSVHA-FNTFFFTKLKTAGYQAVK---------RWTKKVDVFSVDILLVPIHLG 125
Query: 163 GHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFL 222
HW + VVD T +DS+ + NE+ IL L+QE+ +F
Sbjct: 126 VHWCLAVVDFRKKNITYYDSMGGIN------NEACRILLQY---LKQESIDKKRKEFDTN 176
Query: 223 NFQICRQAG--LPQQPNGFDCGYYVMKYMDSPCIV 255
+Q+ + +PQQ NG DCG + KY D CI
Sbjct: 177 GWQLFSKKSQEIPQQMNGSDCGMFACKYAD--CIT 209
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 45 ISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMK 104
I+E+ ++ I +F + N E++ + +ITR ++TL W++ +II Y + +
Sbjct: 5 ITEEMEKEIKNVFRNG-NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMER 63
Query: 105 EAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLD--TCEKIYVPINSD 162
EK + S F ++++ A + ++ R+ ++D + + + VPI+
Sbjct: 64 SKEKGLPSVHA-FNTFFFTKLKTAGYQAVK---------RWTKKVDVFSVDILLVPIHLG 113
Query: 163 GHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFL 222
HW + VVD T +DS+ + NE+ IL L+QE+ +F
Sbjct: 114 VHWCLAVVDFRKKNITYYDSMGGIN------NEACRILLQY---LKQESIDKKRKEFDTN 164
Query: 223 NFQICRQAG--LPQQPNGFDCGYYVMKYMDSPCIV 255
+Q+ + +PQQ NG DCG + KY D CI
Sbjct: 165 GWQLFSKKSQEIPQQMNGSDCGMFACKYAD--CIT 197
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 45 ISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMK 104
I+E+ ++ I +F + N E++ + +ITR ++TL W++ +II Y + +
Sbjct: 9 ITEEMEKEIKNVFRNG-NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMER 67
Query: 105 EAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLD--TCEKIYVPINSD 162
EK + S F ++++ A + ++ R+ ++D + + + VPI+
Sbjct: 68 SKEKGLPSVHA-FNTFFFTKLKTAGYQAVK---------RWTKKVDVFSVDILLVPIHLG 117
Query: 163 GHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFL 222
HW + VVD T +DS+ + NE+ IL L+QE+ +F
Sbjct: 118 VHWCLAVVDFRKKNITYYDSMGGIN------NEACRILLQY---LKQESIDKKRKEFDTN 168
Query: 223 NFQICRQAG--LPQQPNGFDCGYYVMKYMDSPCIV 255
+Q+ + +PQQ NG DCG + KY D CI
Sbjct: 169 GWQLFSKKSQEIPQQMNGSDCGMFACKYAD--CIT 201
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 26/215 (12%)
Query: 45 ISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMK 104
I+E+ ++ I +F + N E++ + +ITR ++TL W++ +II Y + +
Sbjct: 5 ITEEMEKEIKNVFRNG-NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMER 63
Query: 105 EAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLD--TCEKIYVPINSD 162
EK + S F ++++ A + ++ R+ ++D + + + VPI+
Sbjct: 64 SKEKGLPSVHA-FNTFFFTKLKTAGYQAVK---------RWTKKVDVFSVDILLVPIHLG 113
Query: 163 GHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFL 222
HW + VVD T +DS+ + NE+ IL L+QE+ +F
Sbjct: 114 VHWCLAVVDFRKKNITYYDSMGGIN------NEACRILLQY---LKQESIDKKRKEFDTN 164
Query: 223 NFQICRQAG--LPQQPNGFDCGYYVMKYMDSPCIV 255
+Q+ + +PQQ NG D G + KY D CI
Sbjct: 165 GWQLFSKKSQEIPQQMNGSDAGMFACKYAD--CIT 197
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 25/186 (13%)
Query: 74 SITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSL 133
+ITR ++TL W++ +II Y + + EK + S F ++++ A + ++
Sbjct: 12 TITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHA-FNTFFFTKLKTAGYQAV 70
Query: 134 NFAQAAGFRDRYMSRLD--TCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREK 191
R+ ++D + + + VPI+ HW + VVD T +DS+ +
Sbjct: 71 K---------RWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGIN---- 117
Query: 192 MINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAG--LPQQPNGFDCGYYVMKYM 249
NE+ IL L+QE+ +F +Q+ + +PQQ NG D G + KY
Sbjct: 118 --NEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDSGMFACKYA 172
Query: 250 DSPCIV 255
D CI
Sbjct: 173 D--CIT 176
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 31/184 (16%)
Query: 75 ITRSSMRTLLPGEWIDGDIITMYADY---KNMKEAEKDVTSPRCWFLPTYYSQA--ALAD 129
ITR ++TL W++ ++I Y + +N K+ + +F P S A+
Sbjct: 34 ITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKR 93
Query: 130 WS-SLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSR 188
W+ +N + E I VPI+ HW ++V+D+ DS+
Sbjct: 94 WTKGVNLFEQ--------------EIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGH 139
Query: 189 REKMINESLAILASLDFVLRQEARALFCNQFTFLNF--QICRQAGLPQQPNGFDCGYYVM 246
R I L L+ E++ + L + + +PQQ NG DCG +
Sbjct: 140 R---------ICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTC 190
Query: 247 KYMD 250
KY D
Sbjct: 191 KYAD 194
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 31/184 (16%)
Query: 75 ITRSSMRTLLPGEWIDGDIITMYADY---KNMKEAEKDVTSPRCWFLPTYYSQA--ALAD 129
ITR ++TL W++ ++I Y + +N K+ + +F P S A+
Sbjct: 40 ITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKR 99
Query: 130 WS-SLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSR 188
W+ +N + E I VPI+ HW ++V+D+ DS+
Sbjct: 100 WTKGVNLFEQ--------------EIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGH 145
Query: 189 REKMINESLAILASLDFVLRQEARALFCNQFTFLNF--QICRQAGLPQQPNGFDCGYYVM 246
R I L L+ E++ + L + + +PQQ NG D G +
Sbjct: 146 R---------ICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDSGMFTC 196
Query: 247 KYMD 250
KY D
Sbjct: 197 KYAD 200
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 71 GDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYY------SQ 124
G +T + L GE+++ II Y Y +++A ++ F +Y
Sbjct: 31 GGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKEN 90
Query: 125 AALADWSSLNFAQAAGFRDRYMSR---LDTCEKIYVPINSDGHWYMLVV 170
D +L+ AQ R R +R + + I+VP+N HWY+ V+
Sbjct: 91 NLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVI 139
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 232 LPQQPNGFDCGYYVMKYMDS 251
+P+Q N DCG Y+++Y++S
Sbjct: 256 VPKQDNSSDCGVYLLQYVES 275
>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase-Activated Protein Kinase 3
(Mk3)-Inhibitor Complex
pdb|3FXW|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase- Activated Protein Kinase 3INHIBITOR 2
COMPLEX
Length = 336
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 19 HSRDKNVISKSCRLRFSVGPFTIPSP----ISEDAKQLILYLF 57
+S IS + R +G + P+P +SEDAKQLI L
Sbjct: 230 YSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLL 272
>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b
pdb|3SHE|A Chain A, Novel Atp-Competitive Mk2 Inhibitors With Potent
Biochemical And Cell- Based Activity Throughout The
Series
Length = 317
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 19 HSRDKNVISKSCRLRFSVGPFTIPSP----ISEDAKQLILYLF 57
+S IS + R +G + P+P +SEDAKQLI L
Sbjct: 211 YSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLL 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,400,903
Number of Sequences: 62578
Number of extensions: 324478
Number of successful extensions: 750
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 16
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)