Query 022637
Match_columns 294
No_of_seqs 194 out of 1243
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 100.0 3.5E-51 1.2E-55 355.5 25.0 221 42-280 2-225 (226)
2 2xph_A Sentrin-specific protea 100.0 2.5E-50 8.6E-55 352.6 22.1 220 43-280 15-237 (238)
3 1euv_A ULP1 protease; SUMO hyd 100.0 2.3E-47 7.7E-52 330.4 21.3 215 42-280 4-220 (221)
4 3eay_A Sentrin-specific protea 100.0 8.3E-44 2.8E-48 319.7 14.2 216 62-294 17-313 (323)
5 2bkr_A Sentrin-specific protea 100.0 2.2E-41 7.6E-46 291.2 14.4 198 64-294 2-209 (212)
6 2oix_A Xanthomonas outer prote 100.0 3.8E-34 1.3E-38 240.8 12.0 145 85-254 1-149 (186)
7 4ekf_A Adenain; alpha and beta 97.1 0.003 1E-07 51.3 9.6 119 161-292 51-194 (204)
8 1rxq_A YFIT; nickel-binding, h 19.1 83 0.0028 23.9 3.3 30 29-58 3-32 (178)
9 1ttw_B YSCM2; chaperone, type 16.1 40 0.0014 20.7 0.5 34 43-86 9-42 (56)
10 2cxa_A Leucyl/phenylalanyl-tRN 13.7 85 0.0029 26.6 2.1 17 84-100 124-140 (256)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=3.5e-51 Score=355.49 Aligned_cols=221 Identities=22% Similarity=0.328 Sum_probs=197.7
Q ss_pred CCCCCHHHHHHHHHHhccCCCCcceeeecCCeEEehhhhcccCCCCcccHHHHHHHHHHHhhhhhhhccCCCceEEccch
Q 022637 42 PSPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTY 121 (294)
Q Consensus 42 ~~~ls~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~~dl~~L~~~~wLnD~vI~~~~~~ll~~~~~~~~~~~~~~~~~t~ 121 (294)
.+|||+++.+++..++.++ ++++++++++++.|+++|+.+|.+++||||+||+||+++ |.++.... ..+++++|+|+
T Consensus 2 ~~~lt~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~-L~~~~~~~-~~~~~~~f~s~ 78 (226)
T 1th0_A 2 LLELTEDMEKEISNALGHG-PQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNL-LVERNKKQ-GYPALHVFSTF 78 (226)
T ss_dssp CCCCCHHHHHHHHHHHSSS-CTTCEEEEETTEEEEHHHHGGGSTTCCCCHHHHHHHHHH-HHHHHHHH-TCCCEEECCTT
T ss_pred CCCCCHHHHHHHHHHhccC-CccceeeccCCeEEEHHHHhhcCCCCccChHHHHHHHHH-HHHhhhhc-cCCcEEEEeHH
Confidence 3699999999999999875 789999999999999999999999999999999999999 77665432 46899999999
Q ss_pred HHHHhhccccccchhhhhhhhhhcccCCCCCCeeEeeecCCCceeEEEEeecCceEEEecCCCCCCchhhhhHHHHHHHH
Q 022637 122 YSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILA 201 (294)
Q Consensus 122 f~~~l~~~~~~~~~~~v~r~~~~~~~~l~~~d~IfiPIn~~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~l~~~~~i~~ 201 (294)
|+++|.. .+|+++++|++ +.+++++++||||||.++||+|+|||+++++|+|||||++.+... .+
T Consensus 79 f~~~l~~----~~~~~v~~w~~--~~~l~~~~~i~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~---------~~ 143 (226)
T 1th0_A 79 FYPKLKS----GGYQAVKRWTK--GVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRI---------CE 143 (226)
T ss_dssp HHHHHHH----HTGGGTGGGGT--TCCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHH---------HH
T ss_pred HHHHhhh----cccHHHHHHhh--cCCcccCCEEEEeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHH---------HH
Confidence 9999987 57899999999 899999999999999999999999999999999999999987543 67
Q ss_pred HHHHHHHHHHHHhhCCCCCCCcceec--cCCccCCCCCCCCcHHHHHHhhHhhccccCCCC-CCCcHHHHHHHHHHHHcC
Q 022637 202 SLDFVLRQEARALFCNQFTFLNFQIC--RQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSY-QHDSDHARLLLALYLVQS 278 (294)
Q Consensus 202 ~l~~~l~~e~~~k~~~~~~~~~w~~~--~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~~-~~d~~~~R~~l~~~l~~~ 278 (294)
.|..|+..++.++.+..++.++|++. ...++|||.||+|||||||+||++++.+.+..| +.+++.+|++|+.+|+++
T Consensus 144 ~l~~~l~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~ 223 (226)
T 1th0_A 144 ILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQ 223 (226)
T ss_dssp HHHHHHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhC
Confidence 78899999998888888888899874 257899999999999999999999987766666 467899999999999988
Q ss_pred Cc
Q 022637 279 PL 280 (294)
Q Consensus 279 ~~ 280 (294)
.+
T Consensus 224 ~l 225 (226)
T 1th0_A 224 QL 225 (226)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=2.5e-50 Score=352.64 Aligned_cols=220 Identities=22% Similarity=0.350 Sum_probs=196.6
Q ss_pred CCCCHHHHHHHHHHhccCCCCcceeeecCCeEEehhhhcccCCCCcccHHHHHHHHHHHhhhhhhhccCCCceEEccchH
Q 022637 43 SPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYY 122 (294)
Q Consensus 43 ~~ls~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~~dl~~L~~~~wLnD~vI~~~~~~ll~~~~~~~~~~~~~~~~~t~f 122 (294)
++||++++++++.++..+ +++++++..+++.|+++|+.+|.+++||||+||+||+++ |.++... ...+++++|+|+|
T Consensus 15 ~~lt~e~~~~v~~~l~~~-~~~~vl~~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~-L~~~~~~-~~~~~~~~f~sff 91 (238)
T 2xph_A 15 PEITEEMEKEIKNVFRNG-NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNM-LMERSKE-KGLPSVHAFNTFF 91 (238)
T ss_dssp CCCCHHHHHHHHHHSSSS-CTTCCCEEETTEEECHHHHHTTSTTCCCCHHHHHHHHHH-HHHHTTS-TTSCCEEECCTTT
T ss_pred CCCCHHHHHHHHHHHcCC-ChhheeecCCCcEEeHHHHhhcCCCCccCHHHHHHHHHH-HHHhhhh-cCCCceeeeecHH
Confidence 799999999999999864 678899999999999999999999999999999999999 7766443 2467899999999
Q ss_pred HHHhhccccccchhhhhhhhhhcccCCCCCCeeEeeecCCCceeEEEEeecCceEEEecCCCCCCchhhhhHHHHHHHHH
Q 022637 123 SQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILAS 202 (294)
Q Consensus 123 ~~~l~~~~~~~~~~~v~r~~~~~~~~l~~~d~IfiPIn~~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~l~~~~~i~~~ 202 (294)
+++|.. .+|+++++|++ +.+++++++||||||.++||+|+|||+++++|+|||||++.+... +..
T Consensus 92 ~~~l~~----~~~~~v~~w~~--~~~l~~~~~i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~---------~~~ 156 (238)
T 2xph_A 92 FTKLKT----AGYQAVKRWTK--KVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA---------CRI 156 (238)
T ss_dssp THHHHT----TCHHHHTTTTT--TCCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHH---------HHH
T ss_pred HHHhhh----cccHHHHHHhc--cCCcccCCEEEEcccCCCceEEEEEEcccceEEEeecccCCCHHH---------HHH
Confidence 999987 57899999999 899999999999999999999999999999999999999987554 567
Q ss_pred HHHHHHHHHHHhhCCCCCCCcceec--cCCccCCCCCCCCcHHHHHHhhHhhccccCCCC-CCCcHHHHHHHHHHHHcCC
Q 022637 203 LDFVLRQEARALFCNQFTFLNFQIC--RQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSY-QHDSDHARLLLALYLVQSP 279 (294)
Q Consensus 203 l~~~l~~e~~~k~~~~~~~~~w~~~--~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~~-~~d~~~~R~~l~~~l~~~~ 279 (294)
+..||..++.++.+..++.++|++. ...++|||.||+|||||||+||++++.+.+..| +.+++.+|.+|+.+|+++.
T Consensus 157 l~~~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~~~ 236 (238)
T 2xph_A 157 LLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK 236 (238)
T ss_dssp HHHHHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHhCC
Confidence 8889999998888888888999874 357899999999999999999999987766566 4678999999999999886
Q ss_pred c
Q 022637 280 L 280 (294)
Q Consensus 280 ~ 280 (294)
+
T Consensus 237 l 237 (238)
T 2xph_A 237 L 237 (238)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=2.3e-47 Score=330.38 Aligned_cols=215 Identities=22% Similarity=0.411 Sum_probs=183.7
Q ss_pred CCCCCHHHHHHHHHHhccCCCCcceeeecCCeEEehhhhcccCCCCcccHHHHHHHHHHHhhhhhhhccCCCceEEccch
Q 022637 42 PSPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTY 121 (294)
Q Consensus 42 ~~~ls~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~~dl~~L~~~~wLnD~vI~~~~~~ll~~~~~~~~~~~~~~~~~t~ 121 (294)
.+|||++++..++.++.. ++++++++.+++.|+++|+.+|.+++||||+|||||+++ |.+. .+++++|+|+
T Consensus 4 ~~~l~~~~~~~v~~~l~~--~~~~~l~~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~-l~~~------~~~~~~f~s~ 74 (221)
T 1euv_A 4 VPELNEKDDDQVQKALAS--RENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKY-IEKS------TPNTVAFNSF 74 (221)
T ss_dssp SCCCCHHHHHHHHHHHTC--SSCCEEEEETTEEEEHHHHGGGSTTCCCBHHHHHHHHHH-HHHH------STTEEECCTH
T ss_pred CCCCCHHHHHHHHHHhcC--CCCeeeecCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHH-HHhc------CCCeEEEEcH
Confidence 379999999999999987 568999999999999999999999999999999999999 6542 4689999999
Q ss_pred HHHHhhccccccchhhhhhhhhhcccCCCCCCeeEeeecC-CCceeEEEEeecCceEEEecCCCCCCchhhhhHHHHHHH
Q 022637 122 YSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINS-DGHWYMLVVDISHATATIWDSLESPSRREKMINESLAIL 200 (294)
Q Consensus 122 f~~~l~~~~~~~~~~~v~r~~~~~~~~l~~~d~IfiPIn~-~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~l~~~~~i~ 200 (294)
|+++|.. .+|.++++|+++.+.+++++++||||||. ++||+|+|||+++++|+|||||++.+... ..+++
T Consensus 75 f~~~l~~----~~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~-----~~~i~ 145 (221)
T 1euv_A 75 FYTNLSE----RGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAM-----SFAIL 145 (221)
T ss_dssp HHHHHHH----HTGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHH-----HHHHH
T ss_pred HHHHhhh----hccHHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcch-----HHHHH
Confidence 9999987 58999999998667899999999999995 69999999999999999999999764432 12357
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCcceeccCCccCCCCCCCCcHHHHHHhhHhhccccCCCCC-CCcHHHHHHHHHHHHcCC
Q 022637 201 ASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQ-HDSDHARLLLALYLVQSP 279 (294)
Q Consensus 201 ~~l~~~l~~e~~~k~~~~~~~~~w~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~~~-~d~~~~R~~l~~~l~~~~ 279 (294)
+.++.|+..++.++.+. +|.+ ...++|||.||+|||||||+||++++.+.+..|. .+++.+|.+|+.+|+.+.
T Consensus 146 ~~l~~~l~~e~~~~~~~-----~~~~-~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l~f~~~d~~~~R~~i~~~Il~~~ 219 (221)
T 1euv_A 146 TDLQKYVMEESKHTIGE-----DFDL-IHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDA 219 (221)
T ss_dssp HHHHHHHHHHTTSSSCT-----TCEE-EEECCCCCSSSSTHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCC-----CceE-eecCCCCCCCCcCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhcc
Confidence 78899998887654433 3555 3578999999999999999999999876655553 458999999999999876
Q ss_pred c
Q 022637 280 L 280 (294)
Q Consensus 280 ~ 280 (294)
+
T Consensus 220 l 220 (221)
T 1euv_A 220 L 220 (221)
T ss_dssp T
T ss_pred C
Confidence 4
No 4
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.3e-44 Score=319.72 Aligned_cols=216 Identities=20% Similarity=0.324 Sum_probs=167.0
Q ss_pred CCcceee-----ecCCeEEehhhhcccCCCCcccHHHHHHHHHHHhhhhhhhccCCCceEEccchHHHHhhcccc-----
Q 022637 62 NTMEIVV-----DIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWS----- 131 (294)
Q Consensus 62 ~~~~~l~-----~~~~~~l~~~dl~~L~~~~wLnD~vI~~~~~~ll~~~~~~~~~~~~~~~~~t~f~~~l~~~~~----- 131 (294)
+..++++ ..+++.|+++|+.||.+++||||+|||||+++|..++... ...+++|+||||||++|.....
T Consensus 17 ~~~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~-~~~~r~h~FnSFFy~kL~~~~~~~~~~ 95 (323)
T 3eay_A 17 LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASD-ELVERSHIFSSFFYKCLTRKENNLTED 95 (323)
T ss_dssp CCCEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCH-HHHHTEEECCTHHHHHHSCC-------
T ss_pred CcceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccc-cccCcEEEEchHHHHHHHhcccccccc
Confidence 4455665 5789999999999999999999999999999943444322 2357899999999999987532
Q ss_pred -------ccchhhhhhhhhhcccCCCCCCeeEeeecCCCceeEEEEeecCc-----------------------------
Q 022637 132 -------SLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHA----------------------------- 175 (294)
Q Consensus 132 -------~~~~~~v~r~~~~~~~~l~~~d~IfiPIn~~~HW~L~vv~~~~~----------------------------- 175 (294)
..+|.+|+||++ ++++|++|+||||||.+.||+|+|||++..
T Consensus 96 ~~~~s~~~~~y~~VrrWtr--kvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 173 (323)
T 3eay_A 96 NPNLSMAQRRHKRVRTWTR--HINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTID 173 (323)
T ss_dssp -CCSCHHHHHHTTSGGGGT--TCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC-----------------------
T ss_pred cccchhHHHHHHHHHHHHh--hcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccc
Confidence 146899999999 999999999999999999999999998742
Q ss_pred ---------------------------------eEEEecCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhCC--CCC
Q 022637 176 ---------------------------------TATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCN--QFT 220 (294)
Q Consensus 176 ---------------------------------~i~~~DSl~~~~~~~~~l~~~~~i~~~l~~~l~~e~~~k~~~--~~~ 220 (294)
+|.|||||++.+... ++..|+.||..|++++... +++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~--------~~~~Lr~YL~~E~~~k~~~~~~f~ 245 (323)
T 3eay_A 174 NDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQN--------TVQNLREYLEVEWEVKLKTHRQFS 245 (323)
T ss_dssp --------------------------CCCCBCSEEEEECSSCCSSHHH--------HHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred cccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcch--------HHHHHHHHHHHHHHhhcCCCcCCC
Confidence 699999999975332 3788999999999988643 456
Q ss_pred CCcceeccCCccCCCCCCCCcHHHHHHhhHhhccccCCCCCCCcHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 022637 221 FLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL 294 (294)
Q Consensus 221 ~~~w~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~~~~d~~~~R~~l~~~l~~~~~n~~R~~~~~~i~~~ 294 (294)
...|.. ..+.+|||.||+|||||||+||++++......|...+. +..-+-...+..+|.+|+++|.+|
T Consensus 246 ~~~~~~-~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~~~-----~~~wf~~~~i~~kR~ei~~LI~~L 313 (323)
T 3eay_A 246 KTNMVD-LCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIH-----LEKWFPRHVIKTKREDIRELILKL 313 (323)
T ss_dssp TTTSCE-ECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCSSCB-----CTTSSCHHHHHTHHHHHHHHHHHH
T ss_pred HhHcee-ccCCCCCcCCCCcHHHHHHHHHHHHHhCCccccccccc-----cccCCCHHHHHHHHHHHHHHHHHH
Confidence 566765 35789999999999999999999998655444422111 011111234557788888888765
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=2.2e-41 Score=291.15 Aligned_cols=198 Identities=21% Similarity=0.327 Sum_probs=152.1
Q ss_pred cceeeecCCeEEehhhhcccCCCCcccHHHHHHHHHHHhhhhhhhccCCCceEEcc---chHHHHhhccccccchhhhhh
Q 022637 64 MEIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLP---TYYSQAALADWSSLNFAQAAG 140 (294)
Q Consensus 64 ~~~l~~~~~~~l~~~dl~~L~~~~wLnD~vI~~~~~~ll~~~~~~~~~~~~~~~~~---t~f~~~l~~~~~~~~~~~v~r 140 (294)
++++++++++.|+++|+.+|.+++||||+||+||+++ |.++...+ ..+++++|+ ++|+..+ . +++++++
T Consensus 2 d~~~l~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~-L~~~~~~~-~~~~~~~~~p~~s~f~~~~-~-----~~~~v~~ 73 (212)
T 2bkr_A 2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEY-FANSQFHD-SSDHVSFISPEVTQFIKCT-S-----NPAEIAM 73 (212)
T ss_dssp CCEEEEETTEEEEHHHHHTTSTTSCCBHHHHHHHHHH-HHHTTTGG-GTTTEEEECHHHHHHHHHC-C-----CHHHHHH
T ss_pred CCEEEEECCEEEeHHHHhhcCCCCCcCHHHHHHHHHH-HHHhhccC-CCCcEEEEChHHHHHHHhC-C-----CHHHHHH
Confidence 5789999999999999999999999999999999999 77665432 368899999 6777443 2 4678999
Q ss_pred hhhhcccCCCCCCeeEeeec-------CCCceeEEEEeecCceEEEecCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 022637 141 FRDRYMSRLDTCEKIYVPIN-------SDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARA 213 (294)
Q Consensus 141 ~~~~~~~~l~~~d~IfiPIn-------~~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~l~~~~~i~~~l~~~l~~e~~~ 213 (294)
|++ +.+++++++|||||| +++||+|+|||+++++|+|||||++.+... +..+++.|..++..+.
T Consensus 74 ~~~--~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~-----~~~l~~~l~~~l~~~~-- 144 (212)
T 2bkr_A 74 FLE--PLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVH-----AKQVAEKLEAFLGRKG-- 144 (212)
T ss_dssp HHG--GGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHH-----HHHHHHHHHHHHSCTT--
T ss_pred Hhc--ccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHH-----HHHHHHHHHHHhCCcc--
Confidence 999 899999999999999 489999999999999999999999887654 3344566666554321
Q ss_pred hhCCCCCCCcceeccCCccCCCCCCCCcHHHHHHhhHhhccccCCCCCCCcHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 022637 214 LFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARK 293 (294)
Q Consensus 214 k~~~~~~~~~w~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~~~~d~~~~R~~l~~~l~~~~~n~~R~~~~~~i~~ 293 (294)
..|.+ ...++|||.||+|||||||+||++++.+....-.++ ....+-...++.+|.+|+++|.+
T Consensus 145 --------~~~~~-~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~-------~~~~~~~~~i~~~R~~i~~lI~~ 208 (212)
T 2bkr_A 145 --------DKLAF-VEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTES-------LLQLLTPAYITKKRGEWKDLIAT 208 (212)
T ss_dssp --------CCCCE-EECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCC-------HHHHCCHHHHHHHHHHHHHHHHH
T ss_pred --------ccceE-eECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCccc-------ccccCCHHHHHHHHHHHHHHHHH
Confidence 12444 357899999999999999999999976432111111 11111234567888888888876
Q ss_pred C
Q 022637 294 L 294 (294)
Q Consensus 294 ~ 294 (294)
|
T Consensus 209 L 209 (212)
T 2bkr_A 209 L 209 (212)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=100.00 E-value=3.8e-34 Score=240.77 Aligned_cols=145 Identities=16% Similarity=0.251 Sum_probs=106.3
Q ss_pred CCCcccHHHHHHHHHHHhhhhhhhccCCCceEEccchHHHHhhccccccchhhhhhhhhhcccCCCCCCeeEeeecC-CC
Q 022637 85 PGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINS-DG 163 (294)
Q Consensus 85 ~~~wLnD~vI~~~~~~ll~~~~~~~~~~~~~~~~~t~f~~~l~~~~~~~~~~~v~r~~~~~~~~l~~~d~IfiPIn~-~~ 163 (294)
+++||||+|||||+++ |.++........+++|++|+++..+.... ..++.++.+|++ ..++ +++||||||. ++
T Consensus 1 ~~~WLND~iI~fy~~~-L~~~~~~~~~~~~v~f~~p~~~~~l~~~~-~~~~~~~~~~~~--~~~~--~~~i~iPin~~~~ 74 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDD-LARRLRGEPNAHLLHFADSQVVTMLSSAD-PDQQARAQRLLA--GDDI--PPIVFLPINQPNA 74 (186)
T ss_dssp -CCCCCHHHHHHHHHH-HHHHTTTSTTGGGEEECCHHHHHHTTCSS-HHHHHHHHHHHH--STTS--CSEEEEEEEETTT
T ss_pred CCCCcChHHHHHHHHH-HHHHhhhccCcceEEEECHHHHHHHHhCC-HHHHHHHHHHcc--cccc--cCEEEEEEeCCCC
Confidence 4789999999999999 77765433223459999998776654432 134667777877 4444 9999999995 89
Q ss_pred ceeEEEEeecCceE---EEecCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcceeccCCccCCCCCCCC
Q 022637 164 HWYMLVVDISHATA---TIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFD 240 (294)
Q Consensus 164 HW~L~vv~~~~~~i---~~~DSl~~~~~~~~~l~~~~~i~~~l~~~l~~e~~~k~~~~~~~~~w~~~~~~~~PqQ~Ng~D 240 (294)
||+|+|||.+++++ +|||||++.+... ..+++.++.++..+ ...+ ...++|||.||+|
T Consensus 75 HWsLlvi~~~~~~~~~~~~~DSl~~~~~~~------~~l~~~l~~~l~~~----------~~~~---~~~~~PqQ~Ng~D 135 (186)
T 2oix_A 75 HWSLLVVDRRNKDAVAAYHYDSMAQKDPQQ------RYLADMAAYHLGLD----------YQQT---HEMPIAIQSDGYS 135 (186)
T ss_dssp EEEEEEEECSSTTSCEEEEECCCSSCCHHH------HHHHHHHHHHTTCC----------GGGC---EEECBCCCC--CC
T ss_pred ccEEEEEECCCCeeeeeEEEcCCCCCCHHH------HHHHHHHHHHhCCC----------cccc---ccCCCCCCCCCCC
Confidence 99999999999999 9999999965432 23345555554321 1112 3478999999999
Q ss_pred cHHHHHHhhHhhcc
Q 022637 241 CGYYVMKYMDSPCI 254 (294)
Q Consensus 241 CGvfvl~~~e~~~~ 254 (294)
||||||+||++++.
T Consensus 136 CGvfv~~~~~~l~~ 149 (186)
T 2oix_A 136 AGDHVLTGIEVLAH 149 (186)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999874
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=97.13 E-value=0.003 Score=51.28 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=70.4
Q ss_pred CCCceeEEEEeecCceEEEecCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhh-CCCCCC---CcceeccCCccCCCC
Q 022637 161 SDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALF-CNQFTF---LNFQICRQAGLPQQP 236 (294)
Q Consensus 161 ~~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~l~~~~~i~~~l~~~l~~e~~~k~-~~~~~~---~~w~~~~~~~~PqQ~ 236 (294)
+|.||.-+..|++.++++.+|..|-++.+-+. +..-+++... ...+.- .-.+++...+.-|-+
T Consensus 51 GGvHWiA~Aw~P~s~~~YmFDPfG~sd~~L~q-------------iY~F~Y~~llkRSAL~sspdRCv~LvkstqsVQcp 117 (204)
T 4ekf_A 51 GGVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQ-------------VYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGP 117 (204)
T ss_dssp -CCCEEEEEEETTTTEEEEECTBTTCSHHHHH-------------HHHHHHHHHHHHHCC--------EEEECCSBCSCT
T ss_pred CceeEEEeEecCCcceEEEeCCCCCCHHHHHH-------------HhhhhHHHHHHHHhhcCCCCceeEEEeccccccCc
Confidence 78899999999999999999999998766422 1222222110 011100 113344445666777
Q ss_pred CCCCcHHHHHHhhHhhccccCCCCCC----C-----------cH----HHHH--HHHHHHHcCCcHHHHHHHHHHHH
Q 022637 237 NGFDCGYYVMKYMDSPCIVVHDSYQH----D-----------SD----HARL--LLALYLVQSPLNKIRCRLIQEAR 292 (294)
Q Consensus 237 Ng~DCGvfvl~~~e~~~~~~~~~~~~----d-----------~~----~~R~--~l~~~l~~~~~n~~R~~~~~~i~ 292 (294)
++-.||+|.|.|+..+......+++. | .| .++. ...+..+......+|++--+..+
T Consensus 118 ~SaACGLFC~lFL~aF~~~p~~pm~~Np~md~~~Gvp~~~l~~P~~~~~lh~NQe~LY~fl~~hS~YFr~h~~~i~~ 194 (204)
T 4ekf_A 118 NSAAAGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNSPQVQPTLRRNQEQLYSFLERHSPYFRSHSAQIRS 194 (204)
T ss_dssp TCCCHHHHHHHHHHHHHHCTTSCSSSSTTGGGCCCBCGGGTTCGGGHHHHHHHHHHHHHHHHHHCHHHHHTHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhCCCCCCCCCCccccccCcCcccccCCcchHHHHHhHHHHHHHHHhcCHHHHHhHHHHHH
Confidence 88899999999998875544444421 1 12 2222 34555556666677776655544
No 8
>1rxq_A YFIT; nickel-binding, hydrolase, helix-bundle, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Bacillus subtilis} SCOP: a.213.1.1
Probab=19.13 E-value=83 Score=23.94 Aligned_cols=30 Identities=20% Similarity=0.457 Sum_probs=22.6
Q ss_pred hhhccccCCCCCCCCCCCHHHHHHHHHHhc
Q 022637 29 SCRLRFSVGPFTIPSPISEDAKQLILYLFD 58 (294)
Q Consensus 29 ~~~~r~~~~p~~~~~~ls~~~~~~~~~~l~ 58 (294)
|..+||+.|||..+.|.+.++...+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 32 (178)
T 1rxq_A 3 SVNLSYPIGEYKPRESISKEQKDKWIQVLE 32 (178)
T ss_dssp --CCSCTTCCCCCCSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456899999999889999998865554443
No 9
>1ttw_B YSCM2; chaperone, type III secretion; 2.38A {Yersinia pestis}
Probab=16.11 E-value=40 Score=20.73 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHhccCCCCcceeeecCCeEEehhhhcccCCC
Q 022637 43 SPISEDAKQLILYLFDDKLNTMEIVVDIGDNSITRSSMRTLLPG 86 (294)
Q Consensus 43 ~~ls~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~~dl~~L~~~ 86 (294)
..+|.+|...+..++.. ..+.-+++.|+.||.|.
T Consensus 9 ~~Iss~E~~FA~~VLEH----------~KNT~L~R~DiA~LLPR 42 (56)
T 1ttw_B 9 QAITSDERRFAYAVLEH----------AKNTILNRQDVAKLLPR 42 (56)
T ss_pred hhccHHHHHHHHHHHHH----------HHhhhhhHHHHHHHccc
Confidence 35677777777777654 45666899999998764
No 10
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=13.72 E-value=85 Score=26.58 Aligned_cols=17 Identities=24% Similarity=0.640 Sum_probs=14.1
Q ss_pred CCCCcccHHHHHHHHHH
Q 022637 84 LPGEWIDGDIITMYADY 100 (294)
Q Consensus 84 ~~~~wLnD~vI~~~~~~ 100 (294)
.++.||+++++++|.++
T Consensus 124 ~~gTWI~~ei~~aY~~L 140 (256)
T 2cxa_A 124 EEGTWITRGVVEAYHRL 140 (256)
T ss_dssp --CTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 35789999999999987
Done!