BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022638
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 174/262 (66%), Gaps = 2/262 (0%)
Query: 32 FNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGT 91
F +++ TW+ H+ G L LD+ +G GF S +LFG MQ+KLVPGDSAGT
Sbjct: 17 FGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGT 76
Query: 92 VVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTY 151
V FY++S DEIDFEFLGN +GQPYILQTN++ G +REQRIYLWFDPTK+FH Y
Sbjct: 77 VTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYY 136
Query: 152 SILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDW 211
S+LWN++ IV +VD VPIR ++N + GV +P QPM I SLWN D WATRGG +K DW
Sbjct: 137 SVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDW 196
Query: 212 SQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRNYHVI 271
S+ PF+AS+R++ ID C + +FC A WW+QK+F L + Q R WVR + I
Sbjct: 197 SKAPFIASYRSFHIDGCEASVEAKFC-ATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTI 255
Query: 272 YDYCQDNQRFQNNLPKECSLSK 293
Y+YC D R+ ++P EC +
Sbjct: 256 YNYCTDRSRYP-SMPPECKRDR 276
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 150/269 (55%), Gaps = 16/269 (5%)
Query: 24 ASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKL 83
+S +++ F++ + W P H D + ++ LD SG+GF S + G IKL
Sbjct: 35 SSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKL 92
Query: 84 VPGDSAGTVVGFYMASDQ--PNR-DEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYL 140
G +AG + FY++++Q P + DEID EFLG + G+PY LQTN++ +GS +RE RI+L
Sbjct: 93 QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHL 152
Query: 141 WFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSW 200
WFDPT+D+H Y+I W +I+ VD VPIR Y ++ P +P+ + S+W+ SW
Sbjct: 153 WFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSW 209
Query: 201 ATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRR 260
AT G+ K D+ PFV + ++K+ +C A S N + + L+ Q
Sbjct: 210 ATENGKYKADYRYQPFVGKYEDFKLGSCT-------VEAASSCNPASVSPYGQLSQQQVA 262
Query: 261 LFKWVRNYHVIYDYCQDNQRFQNNLPKEC 289
+WV+ +++Y+YC D R + L EC
Sbjct: 263 AMEWVQKNYMVYNYCDDPTR-DHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 150/269 (55%), Gaps = 16/269 (5%)
Query: 24 ASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKL 83
+S +++ F++ + W P H D + ++ LD SG+GF S + G IKL
Sbjct: 12 SSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKL 69
Query: 84 VPGDSAGTVVGFYMASDQ--PNR-DEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYL 140
G +AG + FY++++Q P + DEID EFLG + G+PY LQTN++ +GS +RE RI+L
Sbjct: 70 QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHL 129
Query: 141 WFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSW 200
WFDPT+D+H Y+I W +I+ VD VPIR Y ++ P +P+ + S+W+ SW
Sbjct: 130 WFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSW 186
Query: 201 ATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRR 260
AT G+ K D+ PFV + ++K+ +C A S N + + L+ Q
Sbjct: 187 ATENGKYKADYRYQPFVGKYEDFKLGSCT-------VEAASSCNPASVSPYGQLSQQQVA 239
Query: 261 LFKWVRNYHVIYDYCQDNQRFQNNLPKEC 289
+WV+ +++Y+YC D R + L EC
Sbjct: 240 AMEWVQKNYMVYNYCDDPTR-DHTLTPEC 267
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 21/274 (7%)
Query: 24 ASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKL 83
+S +++ F++ + W P H D + ++ LD SG+GF S + G IKL
Sbjct: 11 SSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKL 68
Query: 84 VPGDSAGTVVGFYMASDQ--PNR-DEIDFEFLGNVSGQPYILQTNIYADGSDN-----RE 135
G +AG + FY++++Q P + DEID EFLG + G+PY LQTN++ +GS + RE
Sbjct: 69 QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRE 128
Query: 136 QRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLW 195
RI+LWFDPT+D+H Y+I W +I+ VD VPIR Y ++ P +PM + S+W
Sbjct: 129 LRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPMWVYGSVW 185
Query: 196 NGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLT 255
+ SWAT G+ K D+ PFV + ++K+ +C A S N + + L+
Sbjct: 186 DASSWATENGKYKADYRYQPFVGKYEDFKLGSCT-------VEAASSCNPASVSPYGQLS 238
Query: 256 SIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKEC 289
Q +WV+ +++Y+YC D R + L EC
Sbjct: 239 QQQVAAMEWVQKNYMVYNYCDDPTR-DHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 150/274 (54%), Gaps = 21/274 (7%)
Query: 24 ASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKL 83
+S +++ F++ + W P H D + ++ LD SG+GF S + G IKL
Sbjct: 14 SSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKL 71
Query: 84 VPGDSAGTVVGFYMASDQ--PNR-DEIDFEFLGNVSGQPYILQTNIYADGSDN-----RE 135
G +AG + FY++++Q P + DEID EFLG + G+PY LQTN++ +GS + RE
Sbjct: 72 QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRE 131
Query: 136 QRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLW 195
RI+LWFDPT+D+H Y+I W +I+ VD VPIR Y ++ P +P+ + S+W
Sbjct: 132 MRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVW 188
Query: 196 NGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLT 255
+ SWAT G+ K D+ PFV + ++K+ +C A S N + + L+
Sbjct: 189 DASSWATENGKYKADYRYQPFVGKYEDFKLGSCT-------VEAASSCNPASVSPYGQLS 241
Query: 256 SIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKEC 289
Q +WV+ +++Y+YC D R + L EC
Sbjct: 242 QQQVAAMEWVQKNYMVYNYCDDPTR-DHTLTPEC 274
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 36 FFVTWSPSHVNTSEDGKAR----SLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGT 91
F TW ++VN + DGK + S ++ A + S ++ +G ++ +K P + G
Sbjct: 28 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 85
Query: 92 VVGFYMASDQPNR---DEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDF 148
V F+ + + DEID EFLG + + +Q N Y +G E+ I L FD +K F
Sbjct: 86 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 142
Query: 149 HTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNG 197
HTY+ W I VD V T A +P P I ++LWNG
Sbjct: 143 HTYAFDWQPGYIKWYVDGVLKHT----ATANIPS---TPGKIMMNLWNG 184
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 36 FFVTWSPSHVNTSEDGKAR----SLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGT 91
F TW ++VN + DGK + S ++ A + S ++ +G ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 92 VVGFYMASDQPNR---DEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDF 148
V F+ + + DEID EFLG + + +Q N Y +G E+ I L FD +K F
Sbjct: 88 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 149 HTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNG 197
HTY+ W I VD V T A +P P I ++LWNG
Sbjct: 145 HTYAFDWQPGYIKWYVDGVLKHT----ATANIPS---TPGKIMMNLWNG 186
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 31 DFNKDFFVTWSPSHVNTSEDGKAR----SLKLDQESGAGFSSNQMFLFGQLDMQIKLVPG 86
++N + W+ HV+ + G+ R S ++ G G S Q + +G ++ +K P
Sbjct: 12 NYNTGLWQKWAFDHVSMTSLGEMRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMK--PA 69
Query: 87 DSAGTVVGFYMAS---DQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFD 143
+ G V FY ++ D DEID EFLG + + +Q N Y +G N E+ + L FD
Sbjct: 70 KNVGIVSAFYTSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFD 126
Query: 144 PTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNG---DSW 200
+HTY+ W + I VD ++ A +P P I +SLW G D W
Sbjct: 127 AANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIPQ---TPGKIYMSLWAGAGVDEW 179
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 36 FFVTWSPSHVNTSEDGKAR----SLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGT 91
F TW ++VN + DGK + S ++ A + S ++ +G ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 92 VVGFYMASDQPNR---DEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDF 148
V F+ + + D+ID +FLG + + +Q N Y +G E+ I L FD +K F
Sbjct: 88 VSSFFTYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 149 HTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNG 197
HTY+ W I VD V T A +P P I ++LWNG
Sbjct: 145 HTYAFDWQPGYIKWYVDGVLKHT----ATANIPS---TPGKIMMNLWNG 186
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 64 AGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNR---DEIDFEFLGNVSGQPY 120
A + S ++ +G ++ +K P + G V F+ + + DEID EFLG + +
Sbjct: 4 AEYRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK-- 59
Query: 121 ILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGV 180
+Q N Y +G E+ I L FD +K FHTY+ W I VD V T A +
Sbjct: 60 -VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHT----ATANI 114
Query: 181 PYPRWQPMSIKISLWNG 197
P P I ++LWNG
Sbjct: 115 PS---TPGKIMMNLWNG 128
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 64 AGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNR---DEIDFEFLGNVSGQPY 120
A + S ++ +G ++ +K P + G V F+ + + DEID EFLG + +
Sbjct: 4 AEYRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK-- 59
Query: 121 ILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGV 180
+Q N Y +G E+ I L FD +K FHTY+ W I VD V T A +
Sbjct: 60 -VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHT----ATANI 114
Query: 181 PYPRWQPMSIKISLWNG 197
P P I ++LWNG
Sbjct: 115 PS---TPGKIMMNLWNG 128
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 64 AGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNR---DEIDFEFLGNVSGQPY 120
A + S ++ +G ++ +K P + G V F+ + + DEID EFLG + +
Sbjct: 4 AEYRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK-- 59
Query: 121 ILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGV 180
+Q N Y +G E+ I L FD +K FHTY+ W I VD V T A +
Sbjct: 60 -VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHT----ATANI 114
Query: 181 PYPRWQPMSIKISLWNG 197
P P I ++LWNG
Sbjct: 115 PS---TPGKIMMNLWNG 128
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 24/176 (13%)
Query: 36 FFVTWSPSHVNTSEDGKARSLKLDQESGAGFS-----SNQMFLFGQLDMQIKLVPGDSAG 90
F TW ++V+ + G+ R L L + F S Q + +G ++++K P + G
Sbjct: 54 FNCTWRANNVSMTSLGEMR-LALTSPAYNKFDCGENRSVQTYGYGLYEVRMK--PAKNTG 110
Query: 91 TVVGFYM---ASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKD 147
V F+ +D DEID EFLG + + +Q N Y +G+ N E+ + L FD
Sbjct: 111 IVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGAGNHEKIVDLGFDAANA 167
Query: 148 FHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNG---DSW 200
+HTY+ W + I VD T N +P P I ++LWNG D W
Sbjct: 168 YHTYAFDWQPNSIKWYVDGQLKHTATNQ----IPT---TPGKIMMNLWNGTGVDEW 216
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 36 FFVTWSPSHVNTSEDGKARSLKLDQESGAGFS-----SNQMFLFGQLDMQIKLVPGDSAG 90
F TW ++V+ + G+ R L L S F S Q + +G ++ +K P + G
Sbjct: 30 FNCTWRANNVSMTSLGEMR-LSLTSPSYNKFDCGENRSVQTYGYGLYEVNMK--PAKNVG 86
Query: 91 TVVGFYM---ASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKD 147
V F+ +D DEID EFLG + + +Q N Y +G N E+ + L FD
Sbjct: 87 IVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANS 143
Query: 148 FHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNG---DSW 200
+HTY+ W + I VD ++ A +P P I ++LWNG D W
Sbjct: 144 YHTYAFDWQPNSIKWYVDG----QLKHTATTQIPQ---TPGKIMMNLWNGAGVDEW 192
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 18/145 (12%)
Query: 62 SGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNR---DEIDFEFLGNVSGQ 118
+GA + + F +G Q+++ P + G V F+ + + DEID EFLG + +
Sbjct: 80 AGAEYRTRDKFGYGLY--QVRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTTK 137
Query: 119 PYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANE 178
+Q N Y + + N E L FD ++DFH Y+ W + I +VD + YR A +
Sbjct: 138 ---VQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEV--YR--AYD 190
Query: 179 GVPYPRWQPMSIKISLWNG---DSW 200
+P P I +++W G D W
Sbjct: 191 DIPV---HPGKIMLNIWPGIGVDEW 212
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 105 DEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMV 164
DEID EFLG + + +Q N Y +G E+ I L FD +K FHTY+ W I V
Sbjct: 21 DEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYV 77
Query: 165 DSVPIRTYRNHANEGVPYPRWQPMSIKISLWNG 197
D V T A +P P I ++LWNG
Sbjct: 78 DGVLKHT----ATANIPS---TPGKIMMNLWNG 103
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 43 SHVNTSEDGKAR-SLKLDQESGAGFSSNQMFL-------FGQLDMQIKLVPGDSAGTVVG 94
S N++ DG + QE+ G++S ++ +G+++ I++ G G
Sbjct: 48 SRANSALDGNGNLVITARQEADGGYTSARLTTQNKVQPQYGRVEASIQIPRGQ--GIWPA 105
Query: 95 FYM-ASDQPNR---DEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDP-----T 145
F+M +D PN D + + + N+ +P+++ +++ G E + P
Sbjct: 106 FWMLGADFPNTPWPDSGEIDIMENIGREPHLVHGSLHGPGYFGGEPLTGSYMHPQGWSFA 165
Query: 146 KDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSW 200
FHT+++ W I VD V +TY + G P+ QP + +++ G W
Sbjct: 166 DTFHTFAVDWRPGSITWSVDGVAYQTYTSADTRGNPWVFDQPFFMILNVAVGGDW 220
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 134 REQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKIS 193
E+ I L FD +K FHTY+ W I VD V T A +P P I ++
Sbjct: 4 HEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHT----ATANIPS---TPGKIMMN 56
Query: 194 LWNG 197
LWNG
Sbjct: 57 LWNG 60
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 36 FFVTWSPSHVNTSEDGKAR----SLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGT 91
F TW ++VN + DGK + S ++ A + S ++ +G ++ +K P + G
Sbjct: 118 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 175
Query: 92 VVGFYMASDQPNR---DEIDFEFLGNVSGQPYILQTNIYADG 130
V F+ + + DEID EFLG + + +Q N Y +G
Sbjct: 176 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG 214
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 62 SGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYM------ASDQPNRDEIDFEFLGNV 115
SGA + + +G+ + ++K+ ++GTV ++ +D E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 116 SGQPYILQTNIYADGSDNREQRI-YLWFDPTKD--FHTYSILWNLHQIVLMVDSVPIR 170
P Q+NI + ++ I + P D FHTY + W + + VD +R
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 118
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 62 SGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYM------ASDQPNRDEIDFEFLGNV 115
SGA + + + +G+ + ++K+ ++GTV ++ +D E+D E LG
Sbjct: 8 SGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 64
Query: 116 SGQPYILQTNIY-ADGSDNREQRIYLWFDPTKD--FHTYSILWNLHQIVLMVDSVPIR 170
P Q+NI + + P D FHTY + W + + VD +R
Sbjct: 65 --SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 120
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 62 SGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYM------ASDQPNRDEIDFEFLGNV 115
SGA + + +G+ + ++K+ ++GTV ++ +D E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 116 SGQPYILQTNIY-ADGSDNREQRIYLWFDPTKD--FHTYSILWNLHQIVLMVDSVPIR 170
P Q+NI + + P D FHTY + W + + VD +R
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 117
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 51 GKARSLKLDQE----SGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPN 103
G S LD+E S A + +Q+ GQL + V G G VG+ +A D P
Sbjct: 67 GYGESRALDEEGADYSKAALARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQ 123
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 62 SGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVV-------GFYMASDQPNRDEIDFEFLGN 114
SGA + + +G+ + ++K+ ++GTV G +A +P E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRP-WVEVDIEVLGK 62
Query: 115 VSGQPYILQTNIYAD--GSDNREQRIYLWFDPTKD--FHTYSILWNLHQIVLMVDSVPIR 170
P Q+NI G+ ++ + P D FHTY + W + + VD +R
Sbjct: 63 ---NPGSFQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 118
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 102 PNRDEIDF-EFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDP------TKDFHTYSIL 154
PN EID EFLG+ +P + ++ G + + P T+DFH + I+
Sbjct: 133 PNCGEIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIV 189
Query: 155 WNLHQIVLMVDSVPIRTYRNHANEGVPYPRW---QPMSIKISLWNGDSW 200
W +I VD E + Y W +P I ++L G W
Sbjct: 190 WYPDKIKWYVDGTFYHEVTKEQVEAMGY-EWVFDKPFYIILNLAVGGYW 237
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 62 SGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYM------ASDQPNRDEIDFEFLGNV 115
SGA + + +G+ + + K ++GTV ++ +D E+D E LG
Sbjct: 8 SGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK- 64
Query: 116 SGQPYILQTNIYAD--GSDNREQRIYLWFDPTKD--FHTYSILWNLHQIVLMVDSVPIR 170
P Q+NI G+ ++ + P D FHTY + W + + VD +R
Sbjct: 65 --NPGSFQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 120
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 62 SGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYM------ASDQPNRDEIDFEFLGNV 115
SGA + + +G+ + + K ++GTV ++ +D E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 116 SGQPYILQTNIYAD--GSDNREQRIYLWFDPTKD--FHTYSILWNLHQIVLMVDSVPIR 170
P Q+NI G+ ++ + P D FHTY + W + + VD +R
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 117
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 24/156 (15%)
Query: 72 FLFGQLDMQIKLVPGDSAGTVVGFYMASDQ--------PNRDEIDFEFLGNVSGQPYILQ 123
+ +G+ +++ +L G GT +M D+ P+ EID +V P ++
Sbjct: 83 WTYGRFEIRARLPSG--RGTWPAIWMLPDRQTYGSAYWPDNGEIDI--AEHVGFNPDVVH 138
Query: 124 TNIYADGSDN--REQRIYLWFDPTK--DFHTYSILWNLHQIVLMVDS-----VPIRTYRN 174
++ ++ QR PT DFH Y+I W +I VD P N
Sbjct: 139 GTVHTKAYNHLLGTQRGGSIRVPTARTDFHVYAIEWTPEEIRWFVDDSLYYRFPNERLTN 198
Query: 175 HANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKID 210
+ +P QP + +++ G +W GGQ +D
Sbjct: 199 PEADWRHWPFDQPFHLIMNIAVGGTW---GGQQGVD 231
>pdb|2D81|A Chain A, Phb Depolymerase (S39a) Complexed With R3hb Trimer
Length = 318
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 211 WSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSI-QRRLFKWV 265
++ GP+ + RN +C++NG P + W+ Q +++ ++ QR+++ W
Sbjct: 43 FAGGPYDCA-RNQYYTSCMYNGYPSITTPTANMKSWSGNQIASVANLGQRKIYMWT 97
>pdb|2D80|A Chain A, Crystal Structure Of Phb Depolymerase From Penicillium
Funiculosum
Length = 318
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 211 WSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSI-QRRLFKWV 265
++ GP+ + RN +C++NG P + W+ Q +++ ++ QR+++ W
Sbjct: 43 FAGGPYDCA-RNQYYTSCMYNGYPSITTPTANMKSWSGNQIASVANLGQRKIYMWT 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,732,939
Number of Sequences: 62578
Number of extensions: 432665
Number of successful extensions: 804
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 36
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)