Query 022638
Match_columns 294
No_of_seqs 284 out of 1579
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:03:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 8E-87 1.7E-91 618.3 34.6 266 28-294 23-291 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 8.1E-84 1.8E-88 593.7 33.2 259 29-289 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 3.3E-44 7.1E-49 320.2 25.5 178 37-228 11-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 1E-37 2.2E-42 279.2 24.9 173 37-226 26-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 1.8E-35 3.8E-40 257.0 19.3 174 34-224 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 4.1E-33 8.9E-38 246.5 23.6 172 37-226 24-210 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 3.6E-32 7.8E-37 250.2 22.4 177 42-226 57-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 7.6E-32 1.7E-36 243.6 22.5 178 38-226 33-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 2.4E-29 5.1E-34 233.2 22.1 170 42-226 43-268 (269)
10 cd02182 GH16_Strep_laminarinas 100.0 2E-28 4.4E-33 225.5 20.7 181 39-226 42-258 (259)
11 cd02180 GH16_fungal_KRE6_gluca 100.0 2E-28 4.2E-33 229.7 19.8 181 39-226 37-294 (295)
12 cd08024 GH16_CCF Coelomic cyto 99.9 2.7E-26 5.9E-31 218.5 19.6 136 64-201 102-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 99.9 4E-26 8.7E-31 216.6 16.5 133 64-198 99-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 9.5E-25 2.1E-29 209.2 19.3 177 36-223 72-262 (355)
15 PF06955 XET_C: Xyloglucan end 99.9 2.2E-22 4.8E-27 142.0 4.3 50 239-289 2-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.6 4.7E-14 1E-18 139.7 14.2 85 145-237 365-462 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.4 2.4E-12 5.2E-17 120.4 12.1 144 53-201 50-251 (293)
18 PF09264 Sial-lect-inser: Vibr 94.0 0.37 8.1E-06 42.8 8.6 95 56-172 11-120 (198)
19 PF13385 Laminin_G_3: Concanav 93.9 1.6 3.4E-05 34.9 11.9 66 145-228 84-149 (157)
20 smart00560 LamGL LamG-like jel 90.2 9 0.0002 31.3 14.8 70 144-230 59-130 (133)
21 PF06439 DUF1080: Domain of Un 88.0 6.5 0.00014 33.3 10.2 101 62-175 42-156 (185)
22 PF10287 DUF2401: Putative TOS 85.5 3.7 8E-05 37.8 7.5 77 76-158 102-207 (235)
23 smart00210 TSPN Thrombospondin 84.0 18 0.00039 31.4 11.1 88 76-173 55-144 (184)
24 cd00110 LamG Laminin G domain; 83.5 22 0.00047 28.7 16.0 85 73-171 20-105 (151)
25 smart00159 PTX Pentraxin / C-r 81.7 37 0.0008 30.1 18.0 74 144-228 88-163 (206)
26 PF07172 GRP: Glycine rich pro 77.7 2.3 4.9E-05 33.8 2.8 23 5-27 3-25 (95)
27 cd00152 PTX Pentraxins are pla 75.9 55 0.0012 28.7 17.9 74 144-228 88-163 (201)
28 PF07127 Nodulin_late: Late no 67.0 5.1 0.00011 28.2 2.3 24 1-24 1-24 (54)
29 KOG1834 Calsyntenin [Extracell 65.7 34 0.00073 36.2 8.7 53 144-201 440-492 (952)
30 PF02973 Sialidase: Sialidase, 64.6 1.1E+02 0.0023 27.4 12.4 134 70-230 30-177 (190)
31 PF02210 Laminin_G_2: Laminin 58.9 80 0.0017 24.2 9.7 75 145-227 53-127 (128)
32 PF09224 DUF1961: Domain of un 58.9 34 0.00073 31.2 6.5 156 41-225 24-218 (218)
33 smart00282 LamG Laminin G doma 58.2 48 0.001 26.4 7.0 28 145-172 61-88 (135)
34 PF13670 PepSY_2: Peptidase pr 55.0 36 0.00079 25.5 5.4 22 47-68 61-82 (83)
35 PRK02710 plastocyanin; Provisi 54.8 29 0.00063 28.1 5.1 21 1-21 1-21 (119)
36 PF11948 DUF3465: Protein of u 51.8 13 0.00028 31.3 2.5 56 4-65 1-57 (131)
37 KOG1691 emp24/gp25L/p24 family 46.1 81 0.0018 28.7 6.8 55 53-112 61-119 (210)
38 PF00354 Pentaxin: Pentaxin fa 45.1 2.2E+02 0.0047 25.1 10.2 72 144-226 82-155 (195)
39 PF14099 Polysacc_lyase: Polys 41.4 2.4E+02 0.0053 24.6 12.1 76 138-225 144-224 (224)
40 PF10916 DUF2712: Protein of u 40.7 1.1E+02 0.0025 26.1 6.6 19 78-97 65-83 (146)
41 PF10880 DUF2673: Protein of u 40.2 27 0.00059 25.2 2.3 18 1-18 1-18 (65)
42 KOG4352 Fas-mediated apoptosis 30.1 1E+02 0.0022 26.8 4.7 38 134-172 91-128 (187)
43 PF15240 Pro-rich: Proline-ric 28.2 38 0.00082 30.0 1.8 15 10-24 2-16 (179)
44 KOG0674 Calreticulin [Posttran 25.0 6.6E+02 0.014 24.6 12.0 48 121-171 144-194 (406)
45 PF11191 DUF2782: Protein of u 24.5 2.8E+02 0.0061 21.9 6.1 39 54-100 39-78 (105)
46 KOG3516 Neurexin IV [Signal tr 23.8 1.2E+03 0.025 27.0 16.2 92 74-175 201-295 (1306)
47 PF04202 Mfp-3: Foot protein 3 23.4 86 0.0019 23.4 2.6 31 12-42 7-38 (71)
48 PF06832 BiPBP_C: Penicillin-B 23.1 96 0.0021 23.4 3.1 36 159-196 44-79 (89)
49 cd00070 GLECT Galectin/galacto 22.3 2.2E+02 0.0047 22.9 5.2 48 126-174 57-105 (127)
50 PF08285 DPM3: Dolichol-phosph 21.7 1.1E+02 0.0024 24.0 3.1 22 1-22 1-22 (91)
51 KOG1277 Endosomal membrane pro 21.2 2.1E+02 0.0046 29.3 5.7 48 104-163 161-208 (593)
52 PHA02054 hypothetical protein 21.1 55 0.0012 25.4 1.3 32 4-37 1-32 (94)
53 PRK13617 psbV cytochrome c-550 20.8 1.6E+02 0.0035 25.9 4.3 16 45-60 43-58 (170)
54 COG3065 Slp Starvation-inducib 20.0 3.2E+02 0.0069 24.4 5.9 25 3-27 4-28 (191)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=8e-87 Score=618.32 Aligned_cols=266 Identities=50% Similarity=0.971 Sum_probs=248.9
Q ss_pred cccccccCCcccccCCCeEEcCCCcEEEEEEeCCCcceEEEcceeEeEEEEEEEEecCCCCCceEEEEEeeecCCCCCce
Q 022638 28 STGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEI 107 (294)
Q Consensus 28 ~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~~~~~EI 107 (294)
.+.+|.++|.+.|+.+|+.+.++|+.|+|+||+.+|++|+||+.|+||+||||||||+|+++|+||||||++.++.+|||
T Consensus 23 ~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~~~~dEI 102 (291)
T PLN03161 23 VEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTGSRHDEI 102 (291)
T ss_pred ccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCCCCCCeE
Confidence 35679999999999999999888889999999999999999999999999999999998889999999999876789999
Q ss_pred EEEEccCCCCCCeEEEeEEEeCCCCCcceeEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCCCCCCCc
Q 022638 108 DFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQP 187 (294)
Q Consensus 108 DiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~~P 187 (294)
||||||+++++|+++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..|.+||+++|
T Consensus 103 DiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~p 182 (291)
T PLN03161 103 DFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQG 182 (291)
T ss_pred EEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987777889997789
Q ss_pred eEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEEEEEeeeeCCC--CCcCCCCC-CCccccccccCcCCHHHHHHHHH
Q 022638 188 MSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGN--PRFCRAGS-PTNWWNQKQFSTLTSIQRRLFKW 264 (294)
Q Consensus 188 m~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~~c~~~~~--~~~c~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 264 (294)
|+|++|||+|++|||+||++||||+++||+|.|++|++++|.+.++ ...| ..+ +..||+++.|++|+++|+++|+|
T Consensus 183 M~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (291)
T PLN03161 183 MRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQC-ADPTPSNWWTSPSYSQLTNAQLTQMKK 261 (291)
T ss_pred eEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCcccc-CCCCccccccCccccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987653 3469 543 46799999999999999999999
Q ss_pred HHhcCeEeecccCCCCCCCCCCCCCCCCCC
Q 022638 265 VRNYHVIYDYCQDNQRFQNNLPKECSLSKY 294 (294)
Q Consensus 265 ~~~~~~~y~yc~d~~r~~~~~p~ec~~~~~ 294 (294)
||+||||||||+|++|||+++||||.++++
T Consensus 262 v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~~ 291 (291)
T PLN03161 262 VRDNFMIYDYCKDTKRFNGVMPPECFKPQF 291 (291)
T ss_pred HHhCcEEEeccCCCCcCCCCcCcccCCCcC
Confidence 999999999999999999878999998764
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=8.1e-84 Score=593.69 Aligned_cols=259 Identities=56% Similarity=1.095 Sum_probs=244.8
Q ss_pred ccccccCCcccccCCCeEEcCCCcEEEEEEeCCCcceEEEcceeEeEEEEEEEEecCCCCCceEEEEEeeecC-CCCCce
Q 022638 29 TGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQ-PNRDEI 107 (294)
Q Consensus 29 ~~~f~~~~~~~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~-~~~~EI 107 (294)
+.+|.++|.++|+++|+++.++|+.|+|+||+.+||+|+|+..|+||+||||||||+|+++|+||||||++++ +.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 4679999999999999999988999999999999999999999999999999999998889999999999987 789999
Q ss_pred EEEEccCCCCCCeEEEeEEEeCCCCCcceeEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCCCCCCCc
Q 022638 108 DFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQP 187 (294)
Q Consensus 108 DiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~~P 187 (294)
|||+||+++|+|+++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777889997799
Q ss_pred eEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEEEEEeeeeCCCCCcCCCCCC-CccccccccCcCCHHHHHHHHHHH
Q 022638 188 MSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSP-TNWWNQKQFSTLTSIQRRLFKWVR 266 (294)
Q Consensus 188 m~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~~c~~~~~~~~c~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 266 (294)
|+|++|||+||+|||+||++|+||+++||+|+|++|+|.+|.+++....| .... ..||+++.+++|+++|+++|+|||
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFS-SCSCTEDWWNGSTYQQLSANQQRAMEWVR 241 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccc-cCCCccccccccccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987655567 4332 579999999999999999999999
Q ss_pred hcCeEeecccCCCCCCCCCCCCC
Q 022638 267 NYHVIYDYCQDNQRFQNNLPKEC 289 (294)
Q Consensus 267 ~~~~~y~yc~d~~r~~~~~p~ec 289 (294)
+||||||||+|++|||. +||||
T Consensus 242 ~~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 242 RNYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred HCCEEEecCCCCCcCCC-CcCCC
Confidence 99999999999999996 89999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=3.3e-44 Score=320.21 Aligned_cols=178 Identities=31% Similarity=0.604 Sum_probs=154.9
Q ss_pred cccccCCCeEEcCCCcEEEEEEeCC-CcceEEEcceeEeEEEEEEEEecCCCCCceEEEEEeeecCCCCCceEEEEccCC
Q 022638 37 FVTWSPSHVNTSEDGKARSLKLDQE-SGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNV 115 (294)
Q Consensus 37 ~~~w~~~nv~~~~~G~~l~L~ld~~-sGs~i~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~~~~~EIDiE~lG~~ 115 (294)
+.+...++|.+..+ +|+|+|++. +|++|.|++.|+||+||||||+|.+ +|+||||||+++ .++|||||++|++
T Consensus 11 ~~~~~~~~~~~~~~--~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~~ 84 (203)
T cd02183 11 DWTVTSGTVDYDDD--GASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGGD 84 (203)
T ss_pred ccEecCCcEeECCC--eEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCCC
Confidence 33446778888643 599999987 7899999999999999999999998 899999999984 6899999999964
Q ss_pred CCCCeEEEeEEEeCCCC---CcceeEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEccCC-CCCCCCCCCceEEE
Q 022638 116 SGQPYILQTNIYADGSD---NREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHAN-EGVPYPRWQPMSIK 191 (294)
Q Consensus 116 ~g~p~~vqtN~~~~g~g---~re~~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~-~g~~~P~~~Pm~l~ 191 (294)
+..+|+|++.+|.. ++++.+.+.++++++||+|+|+|+|+.|+|||||+++|++++.+. .+.+|| ++||+|+
T Consensus 85 ---~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p-~~P~~l~ 160 (203)
T cd02183 85 ---LTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYP-QTPMRLQ 160 (203)
T ss_pred ---CCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCC-CCCcEEE
Confidence 56899999987654 355667788888899999999999999999999999999987543 357799 9999999
Q ss_pred EEeecCCC---------CCCCCCccccCCCCCCeEEEEeEEEEEee
Q 022638 192 ISLWNGDS---------WATRGGQDKIDWSQGPFVASFRNYKIDAC 228 (294)
Q Consensus 192 lnlW~gg~---------Wat~GG~~~~d~~~~Pf~a~~~~v~v~~c 228 (294)
+|+|+||+ || ||. +||+.+||+|.|++|+|++.
T Consensus 161 ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~~ 202 (203)
T cd02183 161 IGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTDY 202 (203)
T ss_pred EEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEeC
Confidence 99999985 98 775 99999999999999999754
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=1e-37 Score=279.17 Aligned_cols=173 Identities=29% Similarity=0.550 Sum_probs=148.6
Q ss_pred cccccCCCeEEcCCCcEEEEEEeCCC-------cceEEEcceeEeEEEEEEEEecCCCCCceEEEEEeeecC---CCCCc
Q 022638 37 FVTWSPSHVNTSEDGKARSLKLDQES-------GAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQ---PNRDE 106 (294)
Q Consensus 37 ~~~w~~~nv~~~~~G~~l~L~ld~~s-------Gs~i~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~---~~~~E 106 (294)
..+|.++||++.+ | .|+|++.+.. +++|.|+.+|+||+||+|||+|.+ +|+|+||||++.. +.++|
T Consensus 26 ~~~~~~~nv~v~~-g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~E 101 (212)
T cd02175 26 NCTWSADNVEFSD-G-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDE 101 (212)
T ss_pred eeeEccccEEEEC-C-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCE
Confidence 3578899999974 4 6889986543 688999999999999999999987 8999999999742 45799
Q ss_pred eEEEEccCCCCCCeEEEeEEEeCCCCCcceeEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCCCCCCC
Q 022638 107 IDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQ 186 (294)
Q Consensus 107 IDiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~~ 186 (294)
||||++|++. ..+++|+|.++.++.+..+.+.++++++||+|+|+|+|++|+|||||++++++...+ ..+| ++
T Consensus 102 IDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p-~~ 174 (212)
T cd02175 102 IDIEFLGKDT---TKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIP-DT 174 (212)
T ss_pred EEEEEccCCC---CEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCC-CC
Confidence 9999999753 478899998877666667778889999999999999999999999999999997643 4689 99
Q ss_pred ceEEEEEeecCC---CCCCCCCccccCCCCCCeEEEEeEEEEE
Q 022638 187 PMSIKISLWNGD---SWATRGGQDKIDWSQGPFVASFRNYKID 226 (294)
Q Consensus 187 Pm~l~lnlW~gg---~Wat~GG~~~~d~~~~Pf~a~~~~v~v~ 226 (294)
||+|++|+|.++ +|+ |. +|. .+|+.|+||+|||+
T Consensus 175 p~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 175 PGKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CcEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 999999999985 598 54 676 89999999999985
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=1.8e-35 Score=257.03 Aligned_cols=174 Identities=33% Similarity=0.640 Sum_probs=149.7
Q ss_pred cCCcccccCCCeEEcCCCcEEEEEEeC-----CCcceEEEcceeEeEEEEEEEEecCCCCCceEEEEEeeec--CCCCCc
Q 022638 34 KDFFVTWSPSHVNTSEDGKARSLKLDQ-----ESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASD--QPNRDE 106 (294)
Q Consensus 34 ~~~~~~w~~~nv~~~~~G~~l~L~ld~-----~sGs~i~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~--~~~~~E 106 (294)
+.++++|+++||++.++ ..|+|++++ .++++|+|+..++||+||+|||++.+ .|+++||||.+. .+.++|
T Consensus 3 ~~~~~~~~~~nv~~~~g-~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVEDG-GNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEETT-SEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEcCC-CEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 56889999999999764 589999987 46899999999999999999998877 899999999653 278899
Q ss_pred eEEEEccCCCCCCeEEEeEEEeCCCCCc--ceeEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCCCCC
Q 022638 107 IDFEFLGNVSGQPYILQTNIYADGSDNR--EQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPR 184 (294)
Q Consensus 107 IDiE~lG~~~g~p~~vqtN~~~~g~g~r--e~~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~ 184 (294)
||||++|++.. .+++|+|..+.+.. +..+.+..++.++||+|+|+|+|++|+|||||++++++......+.+||+
T Consensus 80 IDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 99999998644 69999999888765 55677788999999999999999999999999999999887654446894
Q ss_pred CCceEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEEE
Q 022638 185 WQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYK 224 (294)
Q Consensus 185 ~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~ 224 (294)
..||+|.+++|.+++|++..| .|+||+||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 599999999999999885444 68888876
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=4.1e-33 Score=246.45 Aligned_cols=172 Identities=34% Similarity=0.556 Sum_probs=143.0
Q ss_pred cccccCCCeEEcCCCcEEEEEEeCC------CcceEEE-cceeEeEEEEEEEEecCCCCCceEEEEEeeecC---CCCCc
Q 022638 37 FVTWSPSHVNTSEDGKARSLKLDQE------SGAGFSS-NQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQ---PNRDE 106 (294)
Q Consensus 37 ~~~w~~~nv~~~~~G~~l~L~ld~~------sGs~i~S-k~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~---~~~~E 106 (294)
...|.++||.+.++| .|.|++.+. .+++|.| ++.|+||+||+|||++.+ .|+|+||||++.+ +..+|
T Consensus 24 ~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 356789999997645 688988654 3588999 999999999999999987 8999999999975 56999
Q ss_pred eEEEEccCCCCCCeEEEeEEEeCCCC-----CcceeEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCC
Q 022638 107 IDFEFLGNVSGQPYILQTNIYADGSD-----NREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVP 181 (294)
Q Consensus 107 IDiE~lG~~~g~p~~vqtN~~~~g~g-----~re~~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~ 181 (294)
||||++|++ +..+++++|..+.+ .......+.+++.++||+|+|+|+|+.|+|||||++++++.+.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 999999975 44788888876543 2233455666678999999999999999999999999998653
Q ss_pred CCCCCceEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEEEEE
Q 022638 182 YPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKID 226 (294)
Q Consensus 182 ~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~ 226 (294)
+| ++||+|+||+|.+++|+ |. .+....|..|.||+|||.
T Consensus 172 ~p-~~p~~i~ln~~~~~~~~---~~--~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 172 VP-DDPMNIILNLWSDGGWW---WG--GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CC-CCCcEEEEEEEECCCCc---cc--CCCCCCCcEEEEEEEEEC
Confidence 67 89999999999999987 32 344688999999999973
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=3.6e-32 Score=250.24 Aligned_cols=177 Identities=20% Similarity=0.220 Sum_probs=134.8
Q ss_pred CCCeEEcCCCcEEEEEEeCCC-----------cceEEEcceeEeEEEEEEEEecCCCCCceEEEEEeeecC-CCCCceEE
Q 022638 42 PSHVNTSEDGKARSLKLDQES-----------GAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQ-PNRDEIDF 109 (294)
Q Consensus 42 ~~nv~~~~~G~~l~L~ld~~s-----------Gs~i~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~-~~~~EIDi 109 (294)
++||.+.+ | .|.|+..+.. +++|.|++.++||+||+|||+|.+ . .+|||||++.+ +.++||||
T Consensus 57 ~~nv~v~~-G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~~gEIDI 131 (258)
T cd02178 57 ADNVSVED-G-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDSTTEIDI 131 (258)
T ss_pred cCCeEEEC-C-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCCCCcEEh
Confidence 46777753 5 6888886543 477999999999999999999976 4 57999999863 68999998
Q ss_pred -EEccCCC--CCCeEEEeEEEeCCCC-----Cc---ceeEeccCCCCCCcEEEEEEEc-CceEEEEecCeeEEEEEccCC
Q 022638 110 -EFLGNVS--GQPYILQTNIYADGSD-----NR---EQRIYLWFDPTKDFHTYSILWN-LHQIVLMVDSVPIRTYRNHAN 177 (294)
Q Consensus 110 -E~lG~~~--g~p~~vqtN~~~~g~g-----~r---e~~~~l~fdps~dFHtY~i~Wt-pd~I~fyVDG~~vrt~~~~~~ 177 (294)
|++|++. ..+..+++++|..+.+ .+ ...+...++.+++||+|+|+|+ |++|+|||||++++++++.+.
T Consensus 132 ~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~ 211 (258)
T cd02178 132 LEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSEI 211 (258)
T ss_pred hhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCccc
Confidence 9999763 2245788887643221 11 2234455667899999999999 999999999999999987543
Q ss_pred CCCCCCCCCceEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEEEEE
Q 022638 178 EGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKID 226 (294)
Q Consensus 178 ~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~ 226 (294)
....|+++||+|+||++.|| |+...+. ...-...|..|+||+|||.
T Consensus 212 -~~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 212 -TDGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVRVY 257 (258)
T ss_pred -CcCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEEEe
Confidence 33467799999999999998 9832112 1222457999999999986
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=7.6e-32 Score=243.62 Aligned_cols=178 Identities=25% Similarity=0.440 Sum_probs=141.2
Q ss_pred ccccCCCeEEcCCCcEEEEEEeCCC----------cceEEE--cceeEeEEEEEEEEecCCCCCceEEEEEeeecC----
Q 022638 38 VTWSPSHVNTSEDGKARSLKLDQES----------GAGFSS--NQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQ---- 101 (294)
Q Consensus 38 ~~w~~~nv~~~~~G~~l~L~ld~~s----------Gs~i~S--k~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~---- 101 (294)
..+.++|+.+.+ | .|.|+..+.+ +++|.| ++.|+||+||||||+|.+ +|++|||||++..
T Consensus 33 ~~~~~~nv~v~~-G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYVED-G-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEEEC-C-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 355778898864 4 6888875432 467999 899999999999999987 8999999999863
Q ss_pred --CCCCceEE-EEccCCCCCCeEEEeEEEeCCCC----CcceeEeccC-CCCCCcEEEEEEEcCceEEEEecCeeEEEEE
Q 022638 102 --PNRDEIDF-EFLGNVSGQPYILQTNIYADGSD----NREQRIYLWF-DPTKDFHTYSILWNLHQIVLMVDSVPIRTYR 173 (294)
Q Consensus 102 --~~~~EIDi-E~lG~~~g~p~~vqtN~~~~g~g----~re~~~~l~f-dps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~ 173 (294)
+..+|||| |++|+. +..+++++|..+.. ..+..+.+.. +..++||+|+++|+|++|+|||||++|++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 45789998 999975 45788888877653 2333455554 6899999999999999999999999999998
Q ss_pred ccCCCC-CCCCCCCceEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEEEEE
Q 022638 174 NHANEG-VPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKID 226 (294)
Q Consensus 174 ~~~~~g-~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~ 226 (294)
+..... ..+|+++||+|+||++.+++|+ |. ...-...|..|.||+|||+
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEEC
Confidence 754321 2346689999999999999998 42 1234578999999999984
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=2.4e-29 Score=233.20 Aligned_cols=170 Identities=25% Similarity=0.275 Sum_probs=126.7
Q ss_pred CCCeEEcCCCcEEEEEEeCC-------------------CcceEEEcceeEeEEEEEEEEecC-CCCCceEEEEEeeec-
Q 022638 42 PSHVNTSEDGKARSLKLDQE-------------------SGAGFSSNQMFLFGQLDMQIKLVP-GDSAGTVVGFYMASD- 100 (294)
Q Consensus 42 ~~nv~~~~~G~~l~L~ld~~-------------------sGs~i~Sk~~~~YG~~e~riKlp~-g~s~G~v~AFwl~s~- 100 (294)
++|+.+.+ | .|.|+..+. +++.+.|+..|+|||||||||+++ + .|+||||||++.
T Consensus 43 ~~Nv~v~d-G-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVISN-G-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEEeC-C-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 46777754 5 688887543 246789999999999999999865 5 899999999984
Q ss_pred --------CCCCCceEE-EEccCC---CCCCe----EEEeEEEeCCCCC--c--------ceeEeccCCCCCCcEEEEEE
Q 022638 101 --------QPNRDEIDF-EFLGNV---SGQPY----ILQTNIYADGSDN--R--------EQRIYLWFDPTKDFHTYSIL 154 (294)
Q Consensus 101 --------~~~~~EIDi-E~lG~~---~g~p~----~vqtN~~~~g~g~--r--------e~~~~l~fdps~dFHtY~i~ 154 (294)
.+.++|||| |.+|.. .+++. .+|++++.++.+. + ...+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 156899999 877753 12233 4555555554431 1 12355678899999999999
Q ss_pred EcCceEEEEecCeeEEEEEccCCCCCCCCCCCceEEEEEeecCC---------CCCCCCCccccCCCCCCeEEEEeEEEE
Q 022638 155 WNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGD---------SWATRGGQDKIDWSQGPFVASFRNYKI 225 (294)
Q Consensus 155 Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~~Pm~l~lnlW~gg---------~Wat~GG~~~~d~~~~Pf~a~~~~v~v 225 (294)
|+|++|+|||||++++++.+. +. .+||.+.+++-... .|+ |+. .+.+.+|-.|+||+|||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~~------~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPNK------YW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcCC------cc-ccccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEE
Confidence 999999999999999998642 44 78898888874332 344 343 45678999999999998
Q ss_pred E
Q 022638 226 D 226 (294)
Q Consensus 226 ~ 226 (294)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 5
No 10
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.96 E-value=2e-28 Score=225.47 Aligned_cols=181 Identities=17% Similarity=0.144 Sum_probs=125.3
Q ss_pred cccCCCeEEcCCCcEEEEEEeCCC-----cceEEEccee--Ee----EEEEEEEEecCCC---CCceEEEEEeeecC---
Q 022638 39 TWSPSHVNTSEDGKARSLKLDQES-----GAGFSSNQMF--LF----GQLDMQIKLVPGD---SAGTVVGFYMASDQ--- 101 (294)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~~s-----Gs~i~Sk~~~--~Y----G~~e~riKlp~g~---s~G~v~AFwl~s~~--- 101 (294)
+++++|+.+..+| .|.|+..+.. .++|.|+..+ .| |+||||||+|.+. ..|+||||||++.+
T Consensus 42 ~~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 4456889887456 6888876542 4678887554 33 4999999999742 37999999999852
Q ss_pred -----CCCCceEE-EEccCCCCCCeEEEeEEEeCCCC--Cccee-Ee-ccCCCCCCcEEEEEEEcC-----ceEEEEecC
Q 022638 102 -----PNRDEIDF-EFLGNVSGQPYILQTNIYADGSD--NREQR-IY-LWFDPTKDFHTYSILWNL-----HQIVLMVDS 166 (294)
Q Consensus 102 -----~~~~EIDi-E~lG~~~g~p~~vqtN~~~~g~g--~re~~-~~-l~fdps~dFHtY~i~Wtp-----d~I~fyVDG 166 (294)
|..+|||| |..|.. +...++.++....+ .++.. .. ....+.++||+|+++|++ ++|+|||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~---~~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG 197 (259)
T cd02182 121 NGTNWPACGELDIMENVNGL---STGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDG 197 (259)
T ss_pred CCCCCCccceeeeeeccCCC---CceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECC
Confidence 55689999 999854 33444433322111 11111 10 011235899999999997 999999999
Q ss_pred eeEEEEEccCCC---CCCCCCCCceEEEEEeecCCCCCCCCCccc-cCCCCCCeEEEEeEEEEE
Q 022638 167 VPIRTYRNHANE---GVPYPRWQPMSIKISLWNGDSWATRGGQDK-IDWSQGPFVASFRNYKID 226 (294)
Q Consensus 167 ~~vrt~~~~~~~---g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~-~d~~~~Pf~a~~~~v~v~ 226 (294)
+++++++..... ..+.|+++||+|+||++.||+|+ |... ..-...|..|.||+|||+
T Consensus 198 ~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 198 VVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCcccccCCCceEEEEEEEEe
Confidence 999999764221 12234489999999999999997 3211 112457999999999986
No 11
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.96 E-value=2e-28 Score=229.69 Aligned_cols=181 Identities=23% Similarity=0.212 Sum_probs=125.5
Q ss_pred cccCCCeEEcCCCcEEEEEEeCC-------CcceEEE--cceeEeEEEEEEEEecCC-CCCceEEEEEeeecC-------
Q 022638 39 TWSPSHVNTSEDGKARSLKLDQE-------SGAGFSS--NQMFLFGQLDMQIKLVPG-DSAGTVVGFYMASDQ------- 101 (294)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~~-------sGs~i~S--k~~~~YG~~e~riKlp~g-~s~G~v~AFwl~s~~------- 101 (294)
.+.++|+++.+ | .|.|+..+. +.++|.| |+.|+||+||||||||.+ ...|+||||||+++.
T Consensus 37 ~Y~~~nv~v~~-G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~ 114 (295)
T cd02180 37 WYDPDAVTTIN-G-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLA 114 (295)
T ss_pred EecCcCeEecC-C-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccccc
Confidence 44567888754 5 688887643 3577888 688999999999999963 237999999999841
Q ss_pred ------CC------CCceEE-EEccCCCC-CCeE---EE----------------eEEEeC------C-CCCcce-e---
Q 022638 102 ------PN------RDEIDF-EFLGNVSG-QPYI---LQ----------------TNIYAD------G-SDNREQ-R--- 137 (294)
Q Consensus 102 ------~~------~~EIDi-E~lG~~~g-~p~~---vq----------------tN~~~~------g-~g~re~-~--- 137 (294)
|. .+|||| |.+|.+.. .... +| ..+|.. . .++..+ .
T Consensus 115 ~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 194 (295)
T cd02180 115 TTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISC 194 (295)
T ss_pred cccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccccc
Confidence 32 489998 99985420 1111 11 111211 0 011000 0
Q ss_pred -EeccC----CCCCCcEEEEEEEcC-----ceEEEEecCeeEEEEEccCCC------CCCCCCCCceEEEEEeecCCCCC
Q 022638 138 -IYLWF----DPTKDFHTYSILWNL-----HQIVLMVDSVPIRTYRNHANE------GVPYPRWQPMSIKISLWNGDSWA 201 (294)
Q Consensus 138 -~~l~f----dps~dFHtY~i~Wtp-----d~I~fyVDG~~vrt~~~~~~~------g~~~P~~~Pm~l~lnlW~gg~Wa 201 (294)
..+.. ...++||+|+|+|+| +.|+|||||+++++++..+.. ..++| ++||+|+||+++||+|+
T Consensus 195 ~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~ 273 (295)
T cd02180 195 VTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNFQ 273 (295)
T ss_pred ccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEeccccC
Confidence 11111 135899999999999 899999999999999864311 12467 99999999999999997
Q ss_pred CCCCccccCCCCCCeEEEEeEEEEE
Q 022638 202 TRGGQDKIDWSQGPFVASFRNYKID 226 (294)
Q Consensus 202 t~GG~~~~d~~~~Pf~a~~~~v~v~ 226 (294)
|. +.+-+..|..|+||+|||+
T Consensus 274 ---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ---CC-CcccCCCCCEEEEEEEEEE
Confidence 42 3445678999999999996
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.95 E-value=2.7e-26 Score=218.51 Aligned_cols=136 Identities=24% Similarity=0.267 Sum_probs=102.2
Q ss_pred ceEEE--cceeEeEEEEEEEEecCCCCCceEEEEEeeecC------CCCCceEE-EEccCCCCCC-------eEEEeEEE
Q 022638 64 AGFSS--NQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQ------PNRDEIDF-EFLGNVSGQP-------YILQTNIY 127 (294)
Q Consensus 64 s~i~S--k~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~------~~~~EIDi-E~lG~~~g~p-------~~vqtN~~ 127 (294)
++|.| |+.|+|||||||||||.| .|+||||||++.. |.++|||| |..|+....+ ..++..+|
T Consensus 102 gri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH 179 (330)
T cd08024 102 ARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTLH 179 (330)
T ss_pred EEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEEE
Confidence 56777 588999999999999998 8999999999853 66899998 9999764221 23455555
Q ss_pred eCCC-C-C--cce---eEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEccC-------------------CCCCC
Q 022638 128 ADGS-D-N--REQ---RIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHA-------------------NEGVP 181 (294)
Q Consensus 128 ~~g~-g-~--re~---~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~-------------------~~g~~ 181 (294)
.... . + +.. ......+.+++||+|+|+|+|++|+|||||++++++.... ..+..
T Consensus 180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~ 259 (330)
T cd08024 180 WGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKM 259 (330)
T ss_pred eCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCcC
Confidence 3211 1 1 111 1112245578999999999999999999999999998521 01245
Q ss_pred CCCCCceEEEEEeecCCCCC
Q 022638 182 YPRWQPMSIKISLWNGDSWA 201 (294)
Q Consensus 182 ~P~~~Pm~l~lnlW~gg~Wa 201 (294)
.||++|++|+||+++||.|.
T Consensus 260 aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 260 APFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCEEEEEEEEecCCCC
Confidence 68999999999999999885
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.94 E-value=4e-26 Score=216.55 Aligned_cols=133 Identities=19% Similarity=0.212 Sum_probs=96.7
Q ss_pred ceEEEc--ceeEeEEEEEEEEecCCCCCceEEEEEeeecC-------CCCCceEE-EEccCCCCC---CeEEEeEEEeCC
Q 022638 64 AGFSSN--QMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQ-------PNRDEIDF-EFLGNVSGQ---PYILQTNIYADG 130 (294)
Q Consensus 64 s~i~Sk--~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~-------~~~~EIDi-E~lG~~~g~---p~~vqtN~~~~g 130 (294)
|+|.|+ +.|+|||||+|||||.| .|+||||||++.+ |.++|||| |..||..-. ...+.+.+|...
T Consensus 99 ari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g~ 176 (321)
T cd02179 99 ARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGGP 176 (321)
T ss_pred eeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEccc
Confidence 678884 78999999999999999 8999999999863 46799999 999986210 011112222211
Q ss_pred C-----CCcce---eEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEccCC----------------CCCCCCCCC
Q 022638 131 S-----DNREQ---RIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHAN----------------EGVPYPRWQ 186 (294)
Q Consensus 131 ~-----g~re~---~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~----------------~g~~~P~~~ 186 (294)
. ..+.. ......+.+++||+|+|+|+|++|+|||||++++++..... .....||++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~ 256 (321)
T cd02179 177 VLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFDK 256 (321)
T ss_pred ccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCCC
Confidence 1 11110 11112345799999999999999999999999999986321 123468899
Q ss_pred ceEEEEEeecCC
Q 022638 187 PMSIKISLWNGD 198 (294)
Q Consensus 187 Pm~l~lnlW~gg 198 (294)
|++|+||+++||
T Consensus 257 ~FyliLNlAVGG 268 (321)
T cd02179 257 EFYLSLGVGVGG 268 (321)
T ss_pred CeEEEEEEEecC
Confidence 999999999998
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=9.5e-25 Score=209.23 Aligned_cols=177 Identities=25% Similarity=0.368 Sum_probs=138.2
Q ss_pred CcccccCCCeEEcCCCcEEEEEEeCC-------CcceEEEcce--eEeEEEEEEEEecCCCCCceEEEEEeeec----CC
Q 022638 36 FFVTWSPSHVNTSEDGKARSLKLDQE-------SGAGFSSNQM--FLFGQLDMQIKLVPGDSAGTVVGFYMASD----QP 102 (294)
Q Consensus 36 ~~~~w~~~nv~~~~~G~~l~L~ld~~-------sGs~i~Sk~~--~~YG~~e~riKlp~g~s~G~v~AFwl~s~----~~ 102 (294)
.+..|...++.+..+| .|+|.+++. .++.++|..+ |+||++|+|||+|.+ .|+||||||+++ +.
T Consensus 72 ~~~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~ 148 (355)
T COG2273 72 KNLTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGG 148 (355)
T ss_pred cccceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCC
Confidence 3446666777776544 788888653 4577888766 999999999999976 999999999985 35
Q ss_pred CCCceEEEEccCCCCCCeEEEeEEEeCCCCCcceeEeccC-CCCCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCC
Q 022638 103 NRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWF-DPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVP 181 (294)
Q Consensus 103 ~~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~f-dps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~ 181 (294)
.++|||||++|+++. +..+|+|.+.++.++.+....+.+ +..++||+|.++|.++.|+|||||++++++... .+
T Consensus 149 wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~ 223 (355)
T COG2273 149 WPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DY 223 (355)
T ss_pred CCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----cc
Confidence 779999999997653 456999999999887776666666 889999999999999999999999999999764 34
Q ss_pred CCCCCceEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEE
Q 022638 182 YPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNY 223 (294)
Q Consensus 182 ~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v 223 (294)
.| +.||++++|+|.++.+.+.-|. ......|..+.+..+
T Consensus 224 ~~-~~p~y~~~nl~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 262 (355)
T COG2273 224 IP-QIPFYVLVNLWMGGYAGGPPGE--ALSAGSPLNIDYYRV 262 (355)
T ss_pred Cc-CCcceeEEeecccCccCCCccc--cccCCcceEeeeeee
Confidence 58 8999999999999876533232 333344554444443
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.86 E-value=2.2e-22 Score=142.03 Aligned_cols=50 Identities=50% Similarity=1.056 Sum_probs=42.7
Q ss_pred CCCCCccccccccCcCCHHHHHHHHHHHhcCeEeecccCCCCCCCCCCCCC
Q 022638 239 AGSPTNWWNQKQFSTLTSIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKEC 289 (294)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~p~ec 289 (294)
++++..||+++.++ |+++|+++|+|||+||||||||+|++|||.++|+||
T Consensus 2 ~~~~~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 2 SSSSKSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTTTTSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred cCCCcccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 55567899999888 999999999999999999999999999998789999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.56 E-value=4.7e-14 Score=139.67 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=66.8
Q ss_pred CCCcEEEEEEEcCc-----eEEEEecCeeEEEEEccCCC------CCCCCCCCceEEEEEeecCCCCCCCCCccccCCC-
Q 022638 145 TKDFHTYSILWNLH-----QIVLMVDSVPIRTYRNHANE------GVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWS- 212 (294)
Q Consensus 145 s~dFHtY~i~Wtpd-----~I~fyVDG~~vrt~~~~~~~------g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~- 212 (294)
..+||+|++||.|. .|+|+|||+++.++....-. .-.+| ..||+|++|+....+|+ . +||.
T Consensus 365 ~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip-~EPMyIIlNlgmS~sf~----~--vd~~~ 437 (504)
T PF03935_consen 365 GGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIP-EEPMYIILNLGMSSSFG----Y--VDWNH 437 (504)
T ss_pred CCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccC-cCCceeeeccccccccC----c--ccccc
Confidence 37899999999864 89999999999999754321 24589 99999999999999995 2 6664
Q ss_pred -CCCeEEEEeEEEEEeeeeCCCCCcC
Q 022638 213 -QGPFVASFRNYKIDACVWNGNPRFC 237 (294)
Q Consensus 213 -~~Pf~a~~~~v~v~~c~~~~~~~~c 237 (294)
.+|.+|.||+|||+.=.-. ..-.|
T Consensus 438 L~FP~~M~IDYVRVYQ~~~~-~~vgC 462 (504)
T PF03935_consen 438 LCFPATMRIDYVRVYQPEDA-INVGC 462 (504)
T ss_pred ccccceEEEeEEEEeccCCC-Ceeee
Confidence 4899999999999754222 22458
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.40 E-value=2.4e-12 Score=120.44 Aligned_cols=144 Identities=20% Similarity=0.284 Sum_probs=94.6
Q ss_pred EEEEEEeCCC---------cceEEEcceeEeEEEEEEE-EecCCCCCceEEEEEeeecC-CCCCceEE-EEccCCCCCCe
Q 022638 53 ARSLKLDQES---------GAGFSSNQMFLFGQLDMQI-KLVPGDSAGTVVGFYMASDQ-PNRDEIDF-EFLGNVSGQPY 120 (294)
Q Consensus 53 ~l~L~ld~~s---------Gs~i~Sk~~~~YG~~e~ri-Klp~g~s~G~v~AFwl~s~~-~~~~EIDi-E~lG~~~g~p~ 120 (294)
.|.|.+|..+ .++|.||+.|.+|++|+|+ |||.+ .|+||||||++.+ |..+|||| |.++.......
T Consensus 50 ~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~~~~n~~ 127 (293)
T cd02181 50 NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNLQTSNQM 127 (293)
T ss_pred eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCCCCceEE
Confidence 6888887642 2579999999999999997 99987 8999999999875 78899998 99986433223
Q ss_pred EEEeEE----EeCC--CC-------------Cccee--------EeccCCCCCCcEEEEEEEcCceEEEEe---cCeeEE
Q 022638 121 ILQTNI----YADG--SD-------------NREQR--------IYLWFDPTKDFHTYSILWNLHQIVLMV---DSVPIR 170 (294)
Q Consensus 121 ~vqtN~----~~~g--~g-------------~re~~--------~~l~fdps~dFHtY~i~Wtpd~I~fyV---DG~~vr 170 (294)
++||.- -..+ .+ +.... +-..|+ ..+=-+|.++|+++.|+.+. +.+|-
T Consensus 128 tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~iP~- 205 (293)
T cd02181 128 TLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGSIPA- 205 (293)
T ss_pred EEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCCCCc-
Confidence 444320 0010 00 00001 111222 34557999999999988655 22222
Q ss_pred EEEccCC-------CCCCCCCC---------CceEEEEEeecCCCCC
Q 022638 171 TYRNHAN-------EGVPYPRW---------QPMSIKISLWNGDSWA 201 (294)
Q Consensus 171 t~~~~~~-------~g~~~P~~---------~Pm~l~lnlW~gg~Wa 201 (294)
.+..... +-..|| . ++++|++|+=.-|+||
T Consensus 206 di~~~~pdPs~WG~P~A~f~-~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 206 DITSGSPDPSTWGTPAASFP-GSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred ccccCCCCCcccCcccccCC-CCCCChhHhcccCEEEEEeecccccc
Confidence 1111110 113466 4 8999999999999999
No 18
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=93.99 E-value=0.37 Score=42.79 Aligned_cols=95 Identities=19% Similarity=0.323 Sum_probs=54.1
Q ss_pred EEEeCCCcceEEEcc---eeEeE-EEEEEEEecCCCCCceEEEEEeeecC--------CCCCceEEEEccCCCCCCeEEE
Q 022638 56 LKLDQESGAGFSSNQ---MFLFG-QLDMQIKLVPGDSAGTVVGFYMASDQ--------PNRDEIDFEFLGNVSGQPYILQ 123 (294)
Q Consensus 56 L~ld~~sGs~i~Sk~---~~~YG-~~e~riKlp~g~s~G~v~AFwl~s~~--------~~~~EIDiE~lG~~~g~p~~vq 123 (294)
+.+.-.+|+++.|++ .-.+| +....||+..| |..+-.|.-+.. +..+++=.|+.|..
T Consensus 11 ~qi~gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~~r~l~~lsvn~sG~LvA~L~g~s-------- 79 (198)
T PF09264_consen 11 WQIAGWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGSKRYLPILSVNESGSLVAELEGQS-------- 79 (198)
T ss_dssp EEEEETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESSEEEEEEEEE-TTS-EEEEETTS---------
T ss_pred EEEeccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCceEEEEEEEEcCCCCEEEEEecCC--------
Confidence 344457888888874 33567 78889998865 444433332110 11222222222211
Q ss_pred eEEEeCCCCCcceeEecc-CCCCCCcEEEEEEEcC--ceEEEEecCeeEEEE
Q 022638 124 TNIYADGSDNREQRIYLW-FDPTKDFHTYSILWNL--HQIVLMVDSVPIRTY 172 (294)
Q Consensus 124 tN~~~~g~g~re~~~~l~-fdps~dFHtY~i~Wtp--d~I~fyVDG~~vrt~ 172 (294)
. ...+.+. +| -.+||.|.|...| ..-.|||||++|++.
T Consensus 80 ---------s-~~~~~~~~~d-i~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 80 ---------S-NTLLATTGAD-IHGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp ---------S--EEEE-CHHH-HCSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred ---------C-cEEEeccccc-ccceeEEEEEecCCCCceEEEECCEEEeec
Confidence 1 1122322 22 2579999999987 899999999999985
No 19
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=93.93 E-value=1.6 Score=34.90 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=40.4
Q ss_pred CCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCCCCCCCceEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEEE
Q 022638 145 TKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYK 224 (294)
Q Consensus 145 s~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~ 224 (294)
...||..++.|..+++.+||||+.+.+...... ....+ ..+.. .|.+. ....+|...++.++
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~-~~~~~-~~~~~------iG~~~----------~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN-ISLNS-NGPLF------IGGSG----------GGSSPFNGYIDDLR 145 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESS-SSTTS-CCEEE------ESS-S----------TT--B-EEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCC-cCCCC-cceEE------EeecC----------CCCCceEEEEEEEE
Confidence 588999999999999999999999866533211 00111 22221 12221 23569999999999
Q ss_pred EEee
Q 022638 225 IDAC 228 (294)
Q Consensus 225 v~~c 228 (294)
|...
T Consensus 146 i~~~ 149 (157)
T PF13385_consen 146 IYNR 149 (157)
T ss_dssp EESS
T ss_pred EECc
Confidence 9654
No 20
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=90.22 E-value=9 Score=31.31 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=45.1
Q ss_pred CCCCcEEEEEEEcC--ceEEEEecCeeEEEEEccCCCCCCCCCCCceEEEEEeecCCCCCCCCCccccCCCCCCeEEEEe
Q 022638 144 PTKDFHTYSILWNL--HQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFR 221 (294)
Q Consensus 144 ps~dFHtY~i~Wtp--d~I~fyVDG~~vrt~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 221 (294)
+...||...+.++. .+|++||||+++.+.... +.+...|+.+-.....+ + ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~~-------~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILLG-------G-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccCC-------C-----CCCCCceEEee
Confidence 34789999999988 799999999998654321 11213343332111111 1 12348999999
Q ss_pred EEEEEeeee
Q 022638 222 NYKIDACVW 230 (294)
Q Consensus 222 ~v~v~~c~~ 230 (294)
.|+|..+.-
T Consensus 122 evriy~~aL 130 (133)
T smart00560 122 EVRVYNRAL 130 (133)
T ss_pred EEEEecccc
Confidence 999988753
No 21
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=87.99 E-value=6.5 Score=33.32 Aligned_cols=101 Identities=17% Similarity=0.279 Sum_probs=55.4
Q ss_pred CcceEEEcceeEeEEEEEEEEecCCCCCceEEEEEeeec--C-----CCCCceEEEEccCCCCCCeEEEeEEEeCCCCCc
Q 022638 62 SGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASD--Q-----PNRDEIDFEFLGNVSGQPYILQTNIYADGSDNR 134 (294)
Q Consensus 62 sGs~i~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~--~-----~~~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~r 134 (294)
.++-+.++..|.=..+++.+|+.++ | -..+++-.. + ...-|+.|.--+... ......+..
T Consensus 42 ~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~---------~~~~~~G~~ 108 (185)
T PF06439_consen 42 GGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGT---------GLPNSTGSL 108 (185)
T ss_dssp SS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCS---------TTTTSTTSB
T ss_pred CcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCcc---------CCCCccceE
Confidence 3456888888877899999998543 2 444544432 1 223345442211110 000001100
Q ss_pred c------ee-EeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEcc
Q 022638 135 E------QR-IYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNH 175 (294)
Q Consensus 135 e------~~-~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~ 175 (294)
- .. ......+..+||++.|.-..++|+.+|||++|.++...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 109 YDEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TTTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred EEeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 0 00 01112346899999999999999999999999998764
No 22
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=85.52 E-value=3.7 Score=37.78 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=49.1
Q ss_pred EEEEEEEecCCC-----CCceEEEEEeeecC----------------CCCCceEE-EEccCCCCCCeEEEeEEEe-CCCC
Q 022638 76 QLDMQIKLVPGD-----SAGTVVGFYMASDQ----------------PNRDEIDF-EFLGNVSGQPYILQTNIYA-DGSD 132 (294)
Q Consensus 76 ~~e~riKlp~g~-----s~G~v~AFwl~s~~----------------~~~~EIDi-E~lG~~~g~p~~vqtN~~~-~g~g 132 (294)
-|-.+.++|... ...=.||+||++.. ..++|.|| |.|... +. .+-+.+|. +|..
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCcc
Confidence 477778888731 24568999999742 35899998 999753 33 56666655 4431
Q ss_pred ------CcceeEeccCCCCCCcEEEEEEEcCc
Q 022638 133 ------NREQRIYLWFDPTKDFHTYSILWNLH 158 (294)
Q Consensus 133 ------~re~~~~l~fdps~dFHtY~i~Wtpd 158 (294)
+....+ -.|++..-++++.++.+
T Consensus 179 ~~~~g~G~~~yf---~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYF---KRPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCcc---cCCCCCCeEEEEEEcCC
Confidence 111111 14677888888888653
No 23
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=84.00 E-value=18 Score=31.43 Aligned_cols=88 Identities=19% Similarity=0.275 Sum_probs=50.0
Q ss_pred EEEEEEEecCCCCCceEEEEEeeecCCCCCceEEEEccCCCCCCeEEEeEEEeCCCCCcceeEecc-C-CCCCCcEEEEE
Q 022638 76 QLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLW-F-DPTKDFHTYSI 153 (294)
Q Consensus 76 ~~e~riKlp~g~s~G~v~AFwl~s~~~~~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~-f-dps~dFHtY~i 153 (294)
.+.+.+|..+. +.|+.-++.-. +...++-++..|.. ..+. ++..+..+..+..... . -....||.-.+
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~---~~~~~l~v~l~g~~----~~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA---QNVRQFGLEVDGRA----NTLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC---CCcEEEEEEEeCCc----cEEE--EEECCCCCcEEEEeecCCccccCCceEEEE
Confidence 46677777643 35655554331 23334555555532 1233 2222222222222111 1 13578999999
Q ss_pred EEcCceEEEEecCeeEEEEE
Q 022638 154 LWNLHQIVLMVDSVPIRTYR 173 (294)
Q Consensus 154 ~Wtpd~I~fyVDG~~vrt~~ 173 (294)
.+..+++++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999997764
No 24
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=83.52 E-value=22 Score=28.66 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=47.5
Q ss_pred EeEEEEEEEEecCCCCCceEEEEEeeecCCCCCceEEEEccCCCCCCeEEEeEEEeCCCCCcceeEeccC-CCCCCcEEE
Q 022638 73 LFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWF-DPTKDFHTY 151 (294)
Q Consensus 73 ~YG~~e~riKlp~g~s~G~v~AFwl~s~~~~~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~f-dps~dFHtY 151 (294)
....+++++|.... .|++ |++.+. ...+.+-+|... | .+...+-. | .....+.... -....||..
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~---g---~l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELED---G---RLVLRYDL-G--SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEEC---C---EEEEEEcC-C--cccEEEEccCccCCCCEEEE
Confidence 44567777776643 5654 222221 134555566653 2 23322221 2 1222222221 224679999
Q ss_pred EEEEcCceEEEEecCeeEEE
Q 022638 152 SILWNLHQIVLMVDSVPIRT 171 (294)
Q Consensus 152 ~i~Wtpd~I~fyVDG~~vrt 171 (294)
.|.+....++.+|||..+.+
T Consensus 86 ~i~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 86 SVERNGRSVTLSVDGERVVE 105 (151)
T ss_pred EEEECCCEEEEEECCccEEe
Confidence 99999999999999985433
No 25
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=81.72 E-value=37 Score=30.06 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=44.4
Q ss_pred CCCCcEEEEEEEc--CceEEEEecCeeEEEEEccCCCCCCCCCCCceEEEEEeecCCCCCCCCCccccCCCCCCeEEEEe
Q 022638 144 PTKDFHTYSILWN--LHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFR 221 (294)
Q Consensus 144 ps~dFHtY~i~Wt--pd~I~fyVDG~~vrt~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 221 (294)
....||...+.|+ ...+.+||||+++.. ..-..+..++ .+-.|.|+. .-+.+ ||. .|. .-.|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~--~~~~~g~~i~--~~G~lvlGq-~qd~~---gg~--f~~-~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR--KGLAKGYTVK--PGGSIILGQ-EQDSY---GGG--FDA-TQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc--ccccCCcEEC--CCCEEEEEe-cccCC---CCC--CCC-CcceeEEEe
Confidence 3578999999997 457999999998621 1111233333 233344443 22223 343 342 446888999
Q ss_pred EEEEEee
Q 022638 222 NYKIDAC 228 (294)
Q Consensus 222 ~v~v~~c 228 (294)
.|+|.+-
T Consensus 157 ~v~iw~~ 163 (206)
T smart00159 157 DLNMWDS 163 (206)
T ss_pred eeEEecc
Confidence 9988554
No 26
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=77.68 E-value=2.3 Score=33.80 Aligned_cols=23 Identities=35% Similarity=0.281 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc
Q 022638 5 LKFIGAIGFLSAYLLQISRASVV 27 (294)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (294)
+|.+.||++|||+||.+++..++
T Consensus 3 SK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhh
Confidence 67767777776666665544433
No 27
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=75.89 E-value=55 Score=28.75 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=43.9
Q ss_pred CCCCcEEEEEEEc--CceEEEEecCeeEEEEEccCCCCCCCCCCCceEEEEEeecCCCCCCCCCccccCCCCCCeEEEEe
Q 022638 144 PTKDFHTYSILWN--LHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFR 221 (294)
Q Consensus 144 ps~dFHtY~i~Wt--pd~I~fyVDG~~vrt~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 221 (294)
....||...+.|+ ...+.+||||+++.+-. -..+..++ . ...|.|.-- -+.+ ||. .|. .-.|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~-~-~g~l~lG~~-q~~~---gg~--~~~-~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVG-P-GGSIILGQE-QDSY---GGG--FDA-TQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEEC-C-CCeEEEeec-ccCC---CCC--CCC-CcceEEEEc
Confidence 4678999999997 45799999999885432 11122333 2 223333321 0112 343 332 447888999
Q ss_pred EEEEEee
Q 022638 222 NYKIDAC 228 (294)
Q Consensus 222 ~v~v~~c 228 (294)
.|+|.+-
T Consensus 157 ~v~iw~~ 163 (201)
T cd00152 157 DVNMWDS 163 (201)
T ss_pred eeEEEcc
Confidence 9988543
No 28
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=67.04 E-value=5.1 Score=28.21 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhc
Q 022638 1 MTNLLKFIGAIGFLSAYLLQISRA 24 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (294)
|+..+||+=++++|+.|++.+..+
T Consensus 1 Ma~ilKFvY~mIiflslflv~~~~ 24 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLVVTNV 24 (54)
T ss_pred CccchhhHHHHHHHHHHHHhhccc
Confidence 889999999999999999986544
No 29
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=65.70 E-value=34 Score=36.24 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=38.8
Q ss_pred CCCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCCCCCCCceEEEEEeecCCCCC
Q 022638 144 PTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWA 201 (294)
Q Consensus 144 ps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wa 201 (294)
..++||.|.+.-.=-.++.||||+...-..-. .+|| -.|.++-.-|=+|-=|-
T Consensus 440 CD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwp-lHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 440 CDNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWP-LHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhhheeEEeecCceEEEEEcCcccCCceec----cCCc-cCcccccceeEEeeecc
Confidence 36899999999975559999999876432221 3577 67777777777777786
No 30
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=64.60 E-value=1.1e+02 Score=27.44 Aligned_cols=134 Identities=17% Similarity=0.250 Sum_probs=67.4
Q ss_pred ceeEeEEEEEEEEecCCCCCceEEEEEeeecCC----------CCCceEEEEccCCCCCCeEEEeEEEeCCCCCcceeEe
Q 022638 70 QMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQP----------NRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIY 139 (294)
Q Consensus 70 ~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~~----------~~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~ 139 (294)
....-|.+-+|.|.... + .+-|++-.+++. ..+++=+|+.+.+.+..+...+.+-..+
T Consensus 30 k~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~--------- 97 (190)
T PF02973_consen 30 KKLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRG--------- 97 (190)
T ss_dssp CT-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--S---------
T ss_pred hcccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEecc---------
Confidence 34455677777776432 3 445566665430 1126777887766433232222210000
Q ss_pred ccCCCCCCcEEEEEEEc--CceEEEEecCeeEEEEEccCCCCCCCCCCC--ceEEEEEeecCCCCCCCCCccccCCCCCC
Q 022638 140 LWFDPTKDFHTYSILWN--LHQIVLMVDSVPIRTYRNHANEGVPYPRWQ--PMSIKISLWNGDSWATRGGQDKIDWSQGP 215 (294)
Q Consensus 140 l~fdps~dFHtY~i~Wt--pd~I~fyVDG~~vrt~~~~~~~g~~~P~~~--Pm~l~lnlW~gg~Wat~GG~~~~d~~~~P 215 (294)
..-....||+=++.=. ..+.++|+||+.+.++.... ..|-.+- +=.+.+ |+ ..++|. ...|
T Consensus 98 -~~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~i----G~--t~R~g~-----~~y~ 162 (190)
T PF02973_consen 98 -GYKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQI----GG--TNRAGS-----NAYP 162 (190)
T ss_dssp -EETTEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEE----SS--EEETTE-----EES-
T ss_pred -cccCCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEE----cc--eEeCCC-----ceec
Confidence 0011346788777775 67899999999988875542 2232111 112222 21 112332 3469
Q ss_pred eEEEEeEEEEEeeee
Q 022638 216 FVASFRNYKIDACVW 230 (294)
Q Consensus 216 f~a~~~~v~v~~c~~ 230 (294)
|.-.+++++|+.+.-
T Consensus 163 f~G~I~~l~iYn~aL 177 (190)
T PF02973_consen 163 FNGTIDNLKIYNRAL 177 (190)
T ss_dssp -EEEEEEEEEESS--
T ss_pred ccceEEEEEEEcCcC
Confidence 999999999988743
No 31
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=58.95 E-value=80 Score=24.22 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=48.0
Q ss_pred CCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCCCCCCCceEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEEE
Q 022638 145 TKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYK 224 (294)
Q Consensus 145 s~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~ 224 (294)
...||.-.|.=....++..||+............ ..-+...-.++.||........ ..-....|.-.+++++
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~------~~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~ 124 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS------SDSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLR 124 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT------HHCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccc------eecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEE
Confidence 5779999999999999999999999877543211 0022334456777765422111 1101667888888888
Q ss_pred EEe
Q 022638 225 IDA 227 (294)
Q Consensus 225 v~~ 227 (294)
|++
T Consensus 125 vng 127 (128)
T PF02210_consen 125 VNG 127 (128)
T ss_dssp ETT
T ss_pred ECC
Confidence 753
No 32
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=58.93 E-value=34 Score=31.20 Aligned_cols=156 Identities=20% Similarity=0.313 Sum_probs=75.3
Q ss_pred cCCCeEEcCCCcEEEEE--EeCCC-c--ce--EEEcceeEeE-EEEEEEEecCCCCCceEEEEEeeecCCCCCceEE--E
Q 022638 41 SPSHVNTSEDGKARSLK--LDQES-G--AG--FSSNQMFLFG-QLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDF--E 110 (294)
Q Consensus 41 ~~~nv~~~~~G~~l~L~--ld~~s-G--s~--i~Sk~~~~YG-~~e~riKlp~g~s~G~v~AFwl~s~~~~~~EIDi--E 110 (294)
++.+|++.++ .++|+ ++... | +- +-.+..|-=+ +++...+-.. ..|+..=||--.. ..+| || +
T Consensus 24 G~~~~t~~~~--~m~l~~~~~~e~~~~~~hfVlW~p~~Fp~~i~IsweF~p~~--epGLamlfF~Aag--~~G~-d~fd~ 96 (218)
T PF09224_consen 24 GPAKVTFQNG--RMELSGELDPEQFGDAAHFVLWCPEVFPDDIRISWEFTPLA--EPGLAMLFFAAAG--MNGE-DIFDP 96 (218)
T ss_dssp ESEEEE-GGG--SEEEE------ESSTT--EEEE-SS-B-SSEEEEEEEEEEE---SEEEEEEEEEEE--TTS---TT-T
T ss_pred CCeEEeecCC--cEEEeeeeccccccccccEEEECcccCCCCeEEEEEEEEcC--CCCEEEEEeeccc--CCCC-cccCC
Confidence 3445666554 46666 43222 1 21 3444444322 4444444333 3788888877653 2232 22 2
Q ss_pred EccCCCC--------CCeEEEeEEEeCCCCC-c---c-------------eeEe---ccCCCCCCcEEEEEEEcCceEEE
Q 022638 111 FLGNVSG--------QPYILQTNIYADGSDN-R---E-------------QRIY---LWFDPTKDFHTYSILWNLHQIVL 162 (294)
Q Consensus 111 ~lG~~~g--------~p~~vqtN~~~~g~g~-r---e-------------~~~~---l~fdps~dFHtY~i~Wtpd~I~f 162 (294)
-|-..+| +-.++|..+|...... | . |..+ ...|+. .|+.-.|.=....|.|
T Consensus 97 ~l~~RtG~y~qyhs~dina~HiSYfrr~~~eeraf~t~nLRKs~gf~lvaqGaDplp~~~d~~-~~Yr~~i~K~~~~v~f 175 (218)
T PF09224_consen 97 SLKPRTGSYPQYHSGDINAYHISYFRRKWPEERAFHTCNLRKSPGFHLVAQGADPLPPVEDAR-GPYRMEIVKDGRTVRF 175 (218)
T ss_dssp TS----S-THHHHSSSEEEEEEEEEEESSHHHHTS-EEEEEEETTTEEEEEEE-----GGG---S-EEEEEEEETTEEEE
T ss_pred ccccccCcccceecccHHHHHHHHhcccCcccccccccchhhCCCcceeeccCCCCCCccccC-CCEEEEEEEcCCEEEE
Confidence 2322222 3357888888754321 1 0 1111 123433 6777788889999999
Q ss_pred EecCeeEEEEEccCCCCCCCCCCCceEEEEEeecCCCCCCCCCccccCCC-CCCeEEEEeEEEE
Q 022638 163 MVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWS-QGPFVASFRNYKI 225 (294)
Q Consensus 163 yVDG~~vrt~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~-~~Pf~a~~~~v~v 225 (294)
.|||.+|..++.... ...|- -.+|+ |-.. -+|.+|.|++++|
T Consensus 176 ~In~L~vf~w~Dd~~--~~gPv-----------------l~~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 176 SINGLPVFSWTDDGS--TYGPV-----------------LRGGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp EETTEEEEEEE--SS--SSSS--------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred EECCEEEEEEEcCCC--ccCCc-----------------ccCcE--eeeeccchhhhhhccccC
Confidence 999999999875432 11230 01455 3333 3899999999986
No 33
>smart00282 LamG Laminin G domain.
Probab=58.22 E-value=48 Score=26.42 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=23.7
Q ss_pred CCCcEEEEEEEcCceEEEEecCeeEEEE
Q 022638 145 TKDFHTYSILWNLHQIVLMVDSVPIRTY 172 (294)
Q Consensus 145 s~dFHtY~i~Wtpd~I~fyVDG~~vrt~ 172 (294)
...||.-.|.-....+..+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 4679999999999999999999765443
No 34
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=55.04 E-value=36 Score=25.55 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=16.3
Q ss_pred EcCCCcEEEEEEeCCCcceEEE
Q 022638 47 TSEDGKARSLKLDQESGAGFSS 68 (294)
Q Consensus 47 ~~~~G~~l~L~ld~~sGs~i~S 68 (294)
...+|+.+++.+|+.+|.-++.
T Consensus 61 ~~~dG~~~ev~vD~~tG~V~~~ 82 (83)
T PF13670_consen 61 RDKDGKKVEVYVDPATGEVVKE 82 (83)
T ss_pred EECCCCEEEEEEcCCCCeEeec
Confidence 4567888888888888865544
No 35
>PRK02710 plastocyanin; Provisional
Probab=54.79 E-value=29 Score=28.11 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=11.8
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 022638 1 MTNLLKFIGAIGFLSAYLLQI 21 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (294)
|.+.+|.+.+.++++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGL 21 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 555566665555555555554
No 36
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=51.76 E-value=13 Score=31.31 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc-cccccccCCcccccCCCeEEcCCCcEEEEEEeCCCcce
Q 022638 4 LLKFIGAIGFLSAYLLQISRASVV-STGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAG 65 (294)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~ld~~sGs~ 65 (294)
|-||+++++++++.+.+...+... ....|.. ..+++.+...|..+.+.-|...||+
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~------~qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 1 MKRFLALFLSVLSAFSTALAASDTCLQQAFEN------QQSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred CcchHHHHHHHHHHhccccccchHHHHHHHHh------hccCeeEeccEEEEEECcccCCCCc
Confidence 346677666655553332211111 1122222 3456777777777777667778876
No 37
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.08 E-value=81 Score=28.65 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=39.9
Q ss_pred EEEEEEeCCCcceEEEcceeEeEEEEEEEEecCCCCCceEEEEEeeec-C--C-CCCceEEEEc
Q 022638 53 ARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASD-Q--P-NRDEIDFEFL 112 (294)
Q Consensus 53 ~l~L~ld~~sGs~i~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~-~--~-~~~EIDiE~l 112 (294)
.+.+.+..+.|..+.++..+.-|+|...+.- +|+.-+-+..-. + | ...+||++|-
T Consensus 61 ~~~~~Vts~~G~~~~~~env~~gqFaFta~e-----~~~y~~Cf~~~~~~~~p~~~~~I~ld~k 119 (210)
T KOG1691|consen 61 KLSVKVTSPYGNNLHSKENVTKGQFAFTAEE-----SGMYEACFTADVPGHKPETKRSIDLDWK 119 (210)
T ss_pred eEEEEEEcCCCceeehhhccccceEEEEecc-----CCcEEEEEecccCCCCCCcceEEEEEee
Confidence 4777788888999999999999999887653 466666555521 1 2 3468888875
No 38
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=45.06 E-value=2.2e+02 Score=25.10 Aligned_cols=72 Identities=19% Similarity=0.339 Sum_probs=38.8
Q ss_pred CCCCcEEEEEEEcC--ceEEEEecCeeEEEEEccCCCCCCCCCCCceEEEEEeecCCCCCCCCCccccCCCCCCeEEEEe
Q 022638 144 PTKDFHTYSILWNL--HQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFR 221 (294)
Q Consensus 144 ps~dFHtY~i~Wtp--d~I~fyVDG~~vrt~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 221 (294)
....||.+.+.|+. ..+.+||||+....-. -..|...| .... ++|+.= - -.-||. .| ..-.|.-.+.
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~-~gG~-~vlGQe-Q---d~~gG~--fd-~~q~F~G~i~ 150 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIP-GGGT-LVLGQE-Q---DSYGGG--FD-ESQAFVGEIS 150 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B--SSEE-EEESS--B---SBTTBT--CS-GGGB--EEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceEC-CCCE-EEECcc-c---cccCCC--cC-CccEeeEEEe
Confidence 35789999999964 7899999999543321 12344454 2222 333321 1 122453 44 3458888888
Q ss_pred EEEEE
Q 022638 222 NYKID 226 (294)
Q Consensus 222 ~v~v~ 226 (294)
+|++-
T Consensus 151 ~~~iW 155 (195)
T PF00354_consen 151 DFNIW 155 (195)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 88873
No 39
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=41.45 E-value=2.4e+02 Score=24.65 Aligned_cols=76 Identities=14% Similarity=0.281 Sum_probs=46.2
Q ss_pred EeccCCCCCCcEEEEE--EEcC---ceEEEEecCeeEEEEEccCCCCCCCCCCCceEEEEEeecCCCCCCCCCccccCCC
Q 022638 138 IYLWFDPTKDFHTYSI--LWNL---HQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWS 212 (294)
Q Consensus 138 ~~l~fdps~dFHtY~i--~Wtp---d~I~fyVDG~~vrt~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~ 212 (294)
..+...+...||.+.| .|.+ ..|..++||++|..+.... -++..+..++-++|.-.+ |....+. .+-
T Consensus 144 ~~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~-~~~~~~~--~~~- 215 (224)
T PF14099_consen 144 VDLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSG-WKNDPNE--SDT- 215 (224)
T ss_dssp EECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHC-CHHHSC----SS-
T ss_pred ecCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCC-CcCCCcc--ccc-
Confidence 3344444588998765 5764 7799999999998887632 244236788888887653 2211111 111
Q ss_pred CCCeEEEEeEEEE
Q 022638 213 QGPFVASFRNYKI 225 (294)
Q Consensus 213 ~~Pf~a~~~~v~v 225 (294)
..+||+|++
T Consensus 216 ----~vy~D~v~~ 224 (224)
T PF14099_consen 216 ----QVYYDNVRI 224 (224)
T ss_dssp -----EEEEEEE-
T ss_pred ----EEEeccccC
Confidence 189999875
No 40
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=40.74 E-value=1.1e+02 Score=26.12 Aligned_cols=19 Identities=16% Similarity=0.552 Sum_probs=12.7
Q ss_pred EEEEEecCCCCCceEEEEEe
Q 022638 78 DMQIKLVPGDSAGTVVGFYM 97 (294)
Q Consensus 78 e~riKlp~g~s~G~v~AFwl 97 (294)
-++|.-.. ...|+..+|||
T Consensus 65 KV~l~~St-EGkGTi~tfwL 83 (146)
T PF10916_consen 65 KVNLTYST-EGKGTIYTFWL 83 (146)
T ss_pred EEeccccc-cccceEEEEee
Confidence 34454333 23899999999
No 41
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=40.23 E-value=27 Score=25.20 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=12.5
Q ss_pred CchHHHHHHHHHHHHHHH
Q 022638 1 MTNLLKFIGAIGFLSAYL 18 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (294)
|.+|+||+.+++|-++++
T Consensus 1 mknllkillilafa~pvf 18 (65)
T PF10880_consen 1 MKNLLKILLILAFASPVF 18 (65)
T ss_pred ChhHHHHHHHHHHhhhHh
Confidence 789999887665544444
No 42
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=30.10 E-value=1e+02 Score=26.77 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=29.2
Q ss_pred cceeEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEE
Q 022638 134 REQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTY 172 (294)
Q Consensus 134 re~~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~ 172 (294)
+.+++++|.- +.|=|.|+|.-..+.+..+++|..+++-
T Consensus 91 ~~k~~~~W~~-t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 91 MTKQYRLWLY-TDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred hhhheeEEEE-ecCCceEEEEEeccceeeEEcCcccccc
Confidence 3345666632 3444999999999999999999998874
No 43
>PF15240 Pro-rich: Proline-rich
Probab=28.18 E-value=38 Score=30.02 Aligned_cols=15 Identities=40% Similarity=0.432 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhc
Q 022638 10 AIGFLSAYLLQISRA 24 (294)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (294)
||++|+|.|||.+++
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 566666777765544
No 44
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=25.05 E-value=6.6e+02 Score=24.62 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=29.8
Q ss_pred EEEeEEEeCCCCCcceeEeccCCCCCC--cEEEEEEEcCce-EEEEecCeeEEE
Q 022638 121 ILQTNIYADGSDNREQRIYLWFDPTKD--FHTYSILWNLHQ-IVLMVDSVPIRT 171 (294)
Q Consensus 121 ~vqtN~~~~g~g~re~~~~l~fdps~d--FHtY~i~Wtpd~-I~fyVDG~~vrt 171 (294)
.||.++..+|.. .. +.--...-+| -|.|++.-.|+. -...|||+.+-+
T Consensus 144 KVhvil~ykg~n-hl--ikK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~es 194 (406)
T KOG0674|consen 144 KVHVILNYKGKN-HL--IKKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVES 194 (406)
T ss_pred eEEEEEeccccc-ch--hccccccccCCcceeEEEEecCCCeeEEEEccccccc
Confidence 677777666543 11 0001111223 599999999876 678899998765
No 45
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=24.54 E-value=2.8e+02 Score=21.90 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=20.6
Q ss_pred EEEEEeCCCcceEEEcceeEeE-EEEEEEEecCCCCCceEEEEEeeec
Q 022638 54 RSLKLDQESGAGFSSNQMFLFG-QLDMQIKLVPGDSAGTVVGFYMASD 100 (294)
Q Consensus 54 l~L~ld~~sGs~i~Sk~~~~YG-~~e~riKlp~g~s~G~v~AFwl~s~ 100 (294)
.+.++.+..|. +-.+|..+ +.- -||+-+. .| +.+|++..
T Consensus 39 pevti~~~~~~---~ieEyRv~G~l~-~IkV~P~--~G--~~Yyl~d~ 78 (105)
T PF11191_consen 39 PEVTIIEDGGS---TIEEYRVNGQLY-MIKVQPK--AG--PPYYLVDP 78 (105)
T ss_pred CCEEEEecCCc---EEEEEEECCeEe-eEEEEeC--CC--CCEEEECC
Confidence 34444444442 23445443 322 2455554 57 99999975
No 46
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=23.77 E-value=1.2e+03 Score=26.98 Aligned_cols=92 Identities=15% Similarity=0.175 Sum_probs=54.8
Q ss_pred eEEEEEEEEecCCCCCceEEEEEeeecCCCCCceEEEEccCCCCCCeEEEeEEEeCCCC-Ccc-eeEeccCCC-CCCcEE
Q 022638 74 FGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSD-NRE-QRIYLWFDP-TKDFHT 150 (294)
Q Consensus 74 YG~~e~riKlp~g~s~G~v~AFwl~s~~~~~~EIDiE~lG~~~g~p~~vqtN~~~~g~g-~re-~~~~l~fdp-s~dFHt 150 (294)
.-.+.++.|.... .| +.|+++++..|=|-+|..+.. -.++.|.-..... .++ ..+.++.-. ..-||.
T Consensus 201 ~d~is~~Fkt~~s--dG----vllh~eg~QGd~itlql~~~k----l~l~ld~G~~~~~~s~~~~sis~GslLdD~hWHs 270 (1306)
T KOG3516|consen 201 KDVISLKFKTMQS--DG----VLLHGEGQQGDYITLQLIGGK----LVLILDLGNSKLPSSRTPTSISAGSLLDDQHWHS 270 (1306)
T ss_pred cceeEEEEEeecc--ce----eEEEcccCCCCEEEEEEeCCE----EEEEEecCCccCccccCcceeecccccCCCcceE
Confidence 3477888888765 45 457888778888888998853 1233222111111 121 123332111 234666
Q ss_pred EEEEEcCceEEEEecCeeEEEEEcc
Q 022638 151 YSILWNLHQIVLMVDSVPIRTYRNH 175 (294)
Q Consensus 151 Y~i~Wtpd~I~fyVDG~~vrt~~~~ 175 (294)
-.|+=.-..|.|.|||...+...+.
T Consensus 271 V~i~r~~~~vnftvD~~~~~fr~~G 295 (1306)
T KOG3516|consen 271 VRIERQGRQVNFTVDGVVHHFRATG 295 (1306)
T ss_pred EEEEecCcEEEEEEccceEeecccC
Confidence 6666688999999999999754443
No 47
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=23.39 E-value=86 Score=23.39 Aligned_cols=31 Identities=13% Similarity=-0.068 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHh-cccccccccccCCcccccC
Q 022638 12 GFLSAYLLQISR-ASVVSTGDFNKDFFVTWSP 42 (294)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~f~~~~~~~w~~ 42 (294)
++|+||+|..+. +-.+.+.-+..++...|.-
T Consensus 7 ~VLlaLvLIg~fAVqSdag~~y~p~y~~~~~y 38 (71)
T PF04202_consen 7 AVLLALVLIGSFAVQSDAGYYYYPGYNAPRRY 38 (71)
T ss_pred HHHHHHHHHhhheeeecCccccCCCCCCCccc
Confidence 344555555422 2223344566666665643
No 48
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=23.07 E-value=96 Score=23.39 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=22.8
Q ss_pred eEEEEecCeeEEEEEccCCCCCCCCCCCceEEEEEeec
Q 022638 159 QIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWN 196 (294)
Q Consensus 159 ~I~fyVDG~~vrt~~~~~~~g~~~P~~~Pm~l~lnlW~ 196 (294)
.+.|||||+++.+-.... ...++...|..-.|.+=+
T Consensus 44 ~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTVVD 79 (89)
T ss_pred cEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEEEc
Confidence 788999999996544332 233442467777776643
No 49
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=22.32 E-value=2.2e+02 Score=22.94 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=32.8
Q ss_pred EEeCCCCCcceeEe-ccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEc
Q 022638 126 IYADGSDNREQRIY-LWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRN 174 (294)
Q Consensus 126 ~~~~g~g~re~~~~-l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~ 174 (294)
.+.+|.-+.|++.. .+|.+ .+...-.|.=+++....+|||+++..+..
T Consensus 57 s~~~g~Wg~Eer~~~~pf~~-g~~F~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 57 SFLNGNWGPEERSGGFPFQP-GQPFELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred CCCCCEecHhhccCCCCCCC-CCeEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 33344334555543 44554 34458889999999999999999988754
No 50
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=21.69 E-value=1.1e+02 Score=24.05 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 022638 1 MTNLLKFIGAIGFLSAYLLQIS 22 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (294)
|||+.++++++++++++=++..
T Consensus 1 Mtr~~~~l~~~~~l~~~w~~l~ 22 (91)
T PF08285_consen 1 MTRLQQWLSALLLLSALWLALL 22 (91)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888776653
No 51
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.18 E-value=2.1e+02 Score=29.32 Aligned_cols=48 Identities=23% Similarity=0.386 Sum_probs=29.3
Q ss_pred CCceEEEEccCCCCCCeEEEeEEEeCCCCCcceeEeccCCCCCCcEEEEEEEcCceEEEE
Q 022638 104 RDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLM 163 (294)
Q Consensus 104 ~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~fdps~dFHtY~i~Wtpd~I~fy 163 (294)
|-.++|++-|+ .+++.|+-.++.- .|..|. .-=|+|++.|.+..+.|-
T Consensus 161 hk~f~i~yn~d-----rii~vnlt~~~~v------~L~~~~-~~~~tYsV~W~~t~v~f~ 208 (593)
T KOG1277|consen 161 HKKFEIGYNGD-----RIIDVNLTTHGLV------DLRPDK-KLTFTYSVKWKETEVEFE 208 (593)
T ss_pred eeeEEEeecCc-----eEEEEEeeecccc------cCCCCC-CCceEEEEEeeeccCcHH
Confidence 44555666554 2677777665432 232232 334899999999887763
No 52
>PHA02054 hypothetical protein
Probab=21.07 E-value=55 Score=25.40 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCCc
Q 022638 4 LLKFIGAIGFLSAYLLQISRASVVSTGDFNKDFF 37 (294)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 37 (294)
|+|+|++|++++|.+-. .++.|-.++|++-++
T Consensus 1 m~k~~~~ial~~a~~h~--v~a~pe~Gsydeym~ 32 (94)
T PHA02054 1 MPKIIAAVALLVATVHL--VSANPEVGSYDEFMQ 32 (94)
T ss_pred CchhHHHHHHHHHHhhe--eecCCCCCCHHHHhC
Confidence 46778777665554332 233444667766443
No 53
>PRK13617 psbV cytochrome c-550; Provisional
Probab=20.78 E-value=1.6e+02 Score=25.89 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=10.3
Q ss_pred eEEcCCCcEEEEEEeC
Q 022638 45 VNTSEDGKARSLKLDQ 60 (294)
Q Consensus 45 v~~~~~G~~l~L~ld~ 60 (294)
|.++..|+.++|+..+
T Consensus 43 v~~~~~g~~~~~s~~~ 58 (170)
T PRK13617 43 VPADPSGSQVTFSESE 58 (170)
T ss_pred eecCCCCCeEEeCHHH
Confidence 4556667777777643
No 54
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=20.02 E-value=3.2e+02 Score=24.45 Aligned_cols=25 Identities=20% Similarity=-0.037 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccc
Q 022638 3 NLLKFIGAIGFLSAYLLQISRASVV 27 (294)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (294)
+|-..+.|++..++++|+++...+.
T Consensus 4 ~m~~~~~~l~~~laflLsgC~tiPk 28 (191)
T COG3065 4 QMNMKKGALIGTLAFLLSGCVTIPK 28 (191)
T ss_pred HhhhHHHHHHHHHHHHHhhcccCCh
Confidence 3455788888888888887655544
Done!