Your job contains 1 sequence.
>022641
MRANFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV
KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN
ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME
TYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALS
TLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGGSGGAFRGVQKW
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022641
(294 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 739 3.6e-73 1
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 735 9.6e-73 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 735 9.6e-73 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 733 1.6e-72 1
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 731 2.5e-72 1
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 731 2.5e-72 1
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 730 3.2e-72 1
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 728 5.3e-72 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 727 6.7e-72 1
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 723 1.8e-71 1
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 723 1.8e-71 1
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 698 8.0e-69 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 684 2.4e-67 1
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 680 6.5e-67 1
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 676 1.7e-66 1
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 674 2.8e-66 1
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 628 2.1e-61 1
RGD|1593197 - symbol:LOC367042 "similar to Activator 1 37... 611 1.3e-59 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 589 2.8e-57 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 589 2.8e-57 1
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 560 3.4e-54 1
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 560 3.4e-54 1
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 534 1.9e-51 1
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 531 4.0e-51 1
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 531 4.0e-51 1
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 531 4.0e-51 1
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 530 5.1e-51 1
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 530 5.1e-51 1
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 528 8.3e-51 1
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 526 1.3e-50 1
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 526 1.3e-50 1
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 526 1.3e-50 1
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 524 2.2e-50 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 504 2.9e-48 1
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 493 4.2e-47 1
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 493 4.2e-47 1
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 493 4.2e-47 1
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 492 5.4e-47 1
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 489 1.1e-46 1
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 486 2.3e-46 1
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 484 3.8e-46 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 484 3.8e-46 1
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 482 6.2e-46 1
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 482 6.2e-46 1
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 478 1.6e-45 1
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 477 2.1e-45 1
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 476 2.7e-45 1
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 475 3.4e-45 1
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 475 3.4e-45 1
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 475 3.4e-45 1
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 472 7.1e-45 1
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 471 9.1e-45 1
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 471 9.1e-45 1
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 471 9.1e-45 1
UNIPROTKB|C9JTT7 - symbol:RFC4 "Replication factor C subu... 461 1.0e-43 1
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 453 7.3e-43 1
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 447 3.2e-42 1
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 447 3.2e-42 1
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 420 2.3e-39 1
UNIPROTKB|F8W9B4 - symbol:RFC5 "Replication factor C subu... 364 2.0e-33 1
UNIPROTKB|C9JXZ7 - symbol:RFC4 "Replication factor C subu... 313 5.0e-28 1
SGD|S000000291 - symbol:RFC5 "Subunit of heteropentameric... 190 2.5e-26 2
UNIPROTKB|F1P3C0 - symbol:RFC3 "Uncharacterized protein" ... 207 2.0e-25 2
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 179 4.5e-25 2
ZFIN|ZDB-GENE-020809-3 - symbol:rfc3 "replication factor ... 198 7.6e-25 2
UNIPROTKB|Q2TBV1 - symbol:RFC3 "Replication factor C subu... 196 2.7e-24 2
UNIPROTKB|E2R7L0 - symbol:RFC3 "Uncharacterized protein" ... 197 2.8e-24 2
UNIPROTKB|P40938 - symbol:RFC3 "Replication factor C subu... 197 2.8e-24 2
RGD|1306832 - symbol:Rfc3 "replication factor C (activato... 194 3.5e-24 2
UNIPROTKB|F1RSR4 - symbol:RFC3 "Uncharacterized protein" ... 193 7.7e-24 2
MGI|MGI:1916513 - symbol:Rfc3 "replication factor C (acti... 191 1.3e-23 2
FB|FBgn0028700 - symbol:RfC38 "Replication factor C 38kD ... 189 2.8e-23 2
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 260 9.8e-22 1
CGD|CAL0004366 - symbol:RFC5 species:5476 "Candida albica... 170 4.3e-21 2
WB|WBGene00004339 - symbol:rfc-3 species:6239 "Caenorhabd... 187 1.4e-20 2
UNIPROTKB|Q18547 - symbol:rfc-3 "Protein RFC-3" species:6... 187 1.4e-20 2
POMBASE|SPBC83.14c - symbol:rfc5 "DNA replication factor ... 165 7.7e-20 2
ASPGD|ASPL0000001589 - symbol:AN6300 species:162425 "Emer... 158 2.3e-18 2
UNIPROTKB|G4NAB7 - symbol:MGG_03202 "Replication factor C... 153 3.0e-18 2
GENEDB_PFALCIPARUM|PF11_0117 - symbol:PF11_0117 "replicat... 159 5.6e-18 2
UNIPROTKB|Q8IIQ1 - symbol:PF11_0117 "Replication factor C... 159 5.6e-18 2
UNIPROTKB|H7C5P4 - symbol:RFC2 "Replication factor C subu... 209 5.3e-17 1
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 212 1.2e-15 1
TIGR_CMR|BA_0019 - symbol:BA_0019 "DNA polymerase III, ga... 207 9.4e-15 1
TIGR_CMR|GSU_0094 - symbol:GSU_0094 "DNA polymerase III, ... 206 1.4e-14 1
TAIR|locus:2012497 - symbol:AT1G14460 species:3702 "Arabi... 208 2.0e-14 1
UNIPROTKB|E7DN81 - symbol:E7DN81 "DnaX DNA polymerase III... 199 3.1e-14 1
UNIPROTKB|Q0C591 - symbol:dnaX "DNA polymerase III, subun... 139 8.5e-14 2
TIGR_CMR|ECH_0014 - symbol:ECH_0014 "DNA polymerase III, ... 199 1.0e-13 1
TAIR|locus:2121934 - symbol:AT4G24790 species:3702 "Arabi... 197 4.5e-13 1
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 194 5.7e-13 1
TAIR|locus:504956441 - symbol:RFC1 "replication factor C1... 156 1.6e-12 2
DICTYBASE|DDB_G0293702 - symbol:rfc3 "replication factor ... 180 9.6e-12 1
TAIR|locus:2065299 - symbol:STI "STICHEL" species:3702 "A... 186 1.7e-11 1
UNIPROTKB|Q97RF7 - symbol:dnaX "DNA polymerase III, gamma... 180 2.9e-11 1
TIGR_CMR|SPO_3550 - symbol:SPO_3550 "DNA polymerase III, ... 180 3.2e-11 1
UNIPROTKB|Q2GDS0 - symbol:NSE_0492 "Putative DNA polymera... 175 5.6e-11 1
TIGR_CMR|NSE_0492 - symbol:NSE_0492 "putative DNA polymer... 175 5.6e-11 1
TAIR|locus:2172013 - symbol:AT5G45720 species:3702 "Arabi... 134 5.7e-11 2
WB|WBGene00004337 - symbol:rfc-1 species:6239 "Caenorhabd... 170 5.9e-11 2
WARNING: Descriptions of 68 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 148/245 (60%), Positives = 181/245 (73%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 38 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT
Sbjct: 98 ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 156
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I ++
Sbjct: 157 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADK 216
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGY-PTGGSGGA 287
E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++G P G G
Sbjct: 217 EHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAGTIDGI 276
Query: 288 FRGVQ 292
F Q
Sbjct: 277 FAACQ 281
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 154/278 (55%), Positives = 190/278 (68%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
RIIEPL SRC+KFRFKPLS+++ R+L I +E + + E ++ L +S+GDLR+AIT+
Sbjct: 185 RIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITF 244
Query: 257 LQGAARLFGSS-ITSKDLISVSGY-PTGGSGGAFRGVQ 292
LQ A RL G IT K + ++G P G F Q
Sbjct: 245 LQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQ 282
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 152/252 (60%), Positives = 186/252 (73%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
SS S E K K+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LF
Sbjct: 23 SSSAGSSGETK-KVKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLF 76
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
YGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R
Sbjct: 77 YGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSR 135
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+
Sbjct: 136 SDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCS 195
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
KFRFKPLS+++ R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G
Sbjct: 196 KFRFKPLSDKIQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGK 255
Query: 268 ITSKDLIS-VSG 278
S+D+I+ ++G
Sbjct: 256 EISEDVITDIAG 267
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 152/258 (58%), Positives = 187/258 (72%)
Query: 33 SEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPG 92
S E K K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPG
Sbjct: 28 SSGETK-KVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPG 81
Query: 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152
TGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G P
Sbjct: 82 TGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKP 140
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
CPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFK
Sbjct: 141 CPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK 200
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
PLS+++ R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D
Sbjct: 201 PLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSED 260
Query: 273 LIS-VSGY-PTGGSGGAF 288
+I+ ++G P G F
Sbjct: 261 VITDIAGVIPAATIDGIF 278
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 145/241 (60%), Positives = 179/241 (74%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KKLKPV-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI
Sbjct: 86 ILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTA-SGSRADGKVCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 204
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L + +E + + +EA+S L +S GDLR+AITYLQ A RL G IT K + ++
Sbjct: 205 QQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIA 264
Query: 278 G 278
G
Sbjct: 265 G 265
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 145/241 (60%), Positives = 179/241 (74%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KKLKPV-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI
Sbjct: 86 ILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTA-SGSRADGKVCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 204
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L + +E + + +EA+S L +S GDLR+AITYLQ A RL G IT K + ++
Sbjct: 205 QQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIA 264
Query: 278 G 278
G
Sbjct: 265 G 265
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 150/263 (57%), Positives = 186/263 (70%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
RIIEPL SRC+KFRFKPLS+++ R+L I +E + + E ++ L +S+GDLR+AIT+
Sbjct: 185 RIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITF 244
Query: 257 LQGAARLFGSS-ITSKDLISVSG 278
LQ A RL G IT K + ++G
Sbjct: 245 LQSATRLTGGKEITEKVITDIAG 267
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 146/255 (57%), Positives = 183/255 (71%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
FS+++ P + ++E R QPWVEKYRPK + DVA Q+ +VL TL+ +N
Sbjct: 16 FSSSKQKPTEGKEEQSRL--------QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNL 67
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PHMLFYGPPGTGKT+T LA+A LFGP LY+SR+LELNASD+RGI +VR K+K FA V +
Sbjct: 68 PHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARVQL 127
Query: 143 G--SG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+G + YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +CNY++R
Sbjct: 128 SHPTGLDAEYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTR 187
Query: 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
IIEPLASRC+KFRFKPL R+ I E L+L+ + L S S GDLRRAITYL
Sbjct: 188 IIEPLASRCSKFRFKPLDNSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYL 247
Query: 258 QGAARLFGSSITSKD 272
Q AARL G++ +KD
Sbjct: 248 QSAARLVGAAKAAKD 262
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 142/230 (61%), Positives = 176/230 (76%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT
Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 157
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I ++
Sbjct: 158 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADK 217
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSG 278
E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++G
Sbjct: 218 EHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAG 267
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 145/246 (58%), Positives = 179/246 (72%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-GSGQRRGGYPCPPYKIIILDEADSMT 168
EL++ RVLELNASD+RGI VVR K+K FA + V GS G PCPP+KI+ILDEADSMT
Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSEISGKPCPPFKIVILDEADSMT 158
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I +
Sbjct: 159 SAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAD 218
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGY-PTGGSGG 286
+E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++G PT G
Sbjct: 219 KEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVVPTETIDG 278
Query: 287 AFRGVQ 292
Q
Sbjct: 279 VLAACQ 284
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 146/258 (56%), Positives = 181/258 (70%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K S++QS + Q + PWVEKYRPK V +VA QEEVV VL +LE A+
Sbjct: 6 KGSSSQSVKAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD 65
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
P++LFYGPPGTGKT+T LA A +L+GP+LY+ RVLELNASD+RGI VVR K+K FA +
Sbjct: 66 LPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLT 125
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
V +G R G CPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNY+SRIIEP
Sbjct: 126 V-AGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEP 184
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
L SRC+KFRFKPL+ +V R+L IC +E L E + L +S+GDLR+AIT+LQ A
Sbjct: 185 LTSRCSKFRFKPLANDVQQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGA 244
Query: 262 RLFGS-SITSKDLISVSG 278
RL IT + +I ++G
Sbjct: 245 RLNSEREITEQTIIEIAG 262
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 134/221 (60%), Positives = 168/221 (76%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ QE ++VLT T+++ N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 25 PWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 85 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADSM 144
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME Y+ +TRF ICNYI+RII+P+ SRC+KFRFK L+ E R+ +I
Sbjct: 145 TNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIG 204
Query: 228 NEEGLNLDAE-----ALSTLSSISQGDLRRAITYLQGAARL 263
+E L ++E + L IS GDLR+AITYLQ AA+L
Sbjct: 205 QQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKL 245
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 139/256 (54%), Positives = 175/256 (68%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P K ++ + A + QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYG
Sbjct: 7 PNKKR-KISKLAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYG 65
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPGTGKT+T LA+ +L+GP+L KSR+LELNASD+RGI++VR K+K FA + V +
Sbjct: 66 PPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHD 125
Query: 150 --GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
YPCPPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+
Sbjct: 126 LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCS 185
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--- 264
KFRFK L R+ I +E + D L + IS GDLRR IT LQ A++
Sbjct: 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYL 245
Query: 265 --GSSITSKDLISVSG 278
G +ITS + ++G
Sbjct: 246 GDGKNITSTQVEELAG 261
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 132/233 (56%), Positives = 164/233 (70%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL R+
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
I +EG+ + + +S GD+R+AITYLQ A R F + I+ + +++G
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAG 239
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 131/241 (54%), Positives = 178/241 (73%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K + S PWVE YRPK + V+ QE V+VL TL + N PHMLFYG PGTGKT+T
Sbjct: 9 KKTEQEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTST 68
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA++ +LFGP+L KSRVLELNASD+RGI+++R K+K+FA V + + GYPCPP+KI
Sbjct: 69 ILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN--KVDGYPCPPFKI 126
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
IILDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++RII+PL+SRC+K+RFKPL E
Sbjct: 127 IILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNEN 186
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
M R+ I ++ ++++ ++ L S GD+R+AIT+LQ AA L G+ IT + ++
Sbjct: 187 MVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELA 246
Query: 278 G 278
G
Sbjct: 247 G 247
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 141/260 (54%), Positives = 177/260 (68%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S S D+ + A + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGSGDKSQGTPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQL 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SRII
Sbjct: 121 SASS-VRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIV 179
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRC+KFRFK L E+ + R+ +IC EG+ ++ +A ++ IS GDLRRAIT LQ
Sbjct: 180 PITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSC 239
Query: 261 ARLFGSS--ITSKDLISVSG 278
RL G I + DL +SG
Sbjct: 240 YRLKGPEHIINTADLFEMSG 259
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 129/210 (61%), Positives = 153/210 (72%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
RIIEPL SRC+KFRFKPLS+++ R+L I
Sbjct: 185 RIIEPLTSRCSKFRFKPLSDKIQQQRLLDI 214
>RGD|1593197 [details] [associations]
symbol:LOC367042 "similar to Activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
kDa subunit) (RFC37)" species:10116 "Rattus norvegicus" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1593197
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000074917
OrthoDB:EOG4Q58PN IPI:IPI00780490 Ensembl:ENSRNOT00000060753
Uniprot:D4ADU1
Length = 346
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 142/267 (53%), Positives = 179/267 (67%)
Query: 16 SPNFTQKFSTTQ---SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRV 72
+P T+ ST + SS S E K K+ PV PWVEKYRPK V +VA QEEVV V
Sbjct: 8 TPVSTKPQSTKERGISSSAGSSVESK-KVKPV-----PWVEKYRPKCVDEVAFQEEVVAV 61
Query: 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132
L +LE A+ P++LFYGPPGTGKT+T LA A +LFGP L++ RVLELNASD+RGI
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPALFRLRVLELNASDERGIQ---- 117
Query: 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192
K+K FA + V SG R G PCP +K +ILDEADSMT A+ ALR+TME SK TRF C
Sbjct: 118 KVKNFAQLTV-SGSRSDGKPCPSFKTVILDEADSMTSAAR-ALRQTMEKESKTTRFCLFC 175
Query: 193 NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252
NY+SRIIEPL SR +KF F PLS+++ R+L I +E + L + L +IS+GDLR+
Sbjct: 176 NYVSRIIEPLTSRRSKFCFTPLSDKIQQKRLLGIAEKENVKLGDD----LVTISEGDLRK 231
Query: 253 AITYLQGAARLFGSSITSKDLIS-VSG 278
AI LQ A R G T +D+I+ ++G
Sbjct: 232 AIPLLQSATRPTGGKETPEDVITDIAG 258
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 110/234 (47%), Positives = 156/234 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSM 167
E RVLELNASDDRGINVVR KIK + +++ + P +K+++LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L+IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYIC 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
E +++ +AL + ++GDLRRA++ LQ + IT ++ VSG P+
Sbjct: 185 QNENIDIVDDALEKIIETTEGDLRRAVSILQ-LCSCINTKITLNSVLDVSGLPS 237
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 110/234 (47%), Positives = 156/234 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSM 167
E RVLELNASDDRGINVVR KIK + +++ + P +K+++LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L+IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYIC 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
E +++ +AL + ++GDLRRA++ LQ + IT ++ VSG P+
Sbjct: 185 QNENIDIVDDALEKIIETTEGDLRRAVSILQ-LCSCINTKITLNSVLDVSGLPS 237
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 115/231 (49%), Positives = 150/231 (64%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV K VL W EKYRPK + D+A+Q+EVV +L L+ + PH+LFYGPPGTGK
Sbjct: 6 EVDNKRPKVLT----WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGK 61
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+ ALA QLF ++ RVL+LNASD+RGI VVR KI++F+ ++G R
Sbjct: 62 TSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKL-- 119
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
KIIILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR+I P+ SRCAKFRFK L
Sbjct: 120 -KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLP 178
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
E+ R+ IC+ EG + + L + S+GDLRRA+ LQ A + S
Sbjct: 179 AEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKS 229
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 115/231 (49%), Positives = 150/231 (64%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV K VL W EKYRPK + D+A+Q+EVV +L L+ + PH+LFYGPPGTGK
Sbjct: 6 EVDNKRPKVLT----WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGK 61
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+ ALA QLF ++ RVL+LNASD+RGI VVR KI++F+ ++G R
Sbjct: 62 TSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKL-- 119
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
KIIILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR+I P+ SRCAKFRFK L
Sbjct: 120 -KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLP 178
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
E+ R+ IC+ EG + + L + S+GDLRRA+ LQ A + S
Sbjct: 179 AEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKS 229
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 111/260 (42%), Positives = 155/260 (59%)
Query: 24 STTQSSPEKSEDEVK-RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
S T S E S + KM S+ PWVEKYRP ++ ++ E++V+ LT +E
Sbjct: 3 SRTGSREEHSLQFLNLTKMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTL 62
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-A 141
PH+LFYGPPGTGKTTT LA A Q++ P S VLELNASD+RGI+VVR I FA
Sbjct: 63 PHLLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKG 122
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
+ + P+K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY++ I+
Sbjct: 123 LQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPA 182
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ SRC +FRF PL ++++ R+ +I E L + + L +S+GD+R I LQ A
Sbjct: 183 IQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTA 242
Query: 262 RLFGSSITSKDLISVSGYPT 281
F +++ + G PT
Sbjct: 243 MSF-DTVSENTVYQCIGQPT 261
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 110/250 (44%), Positives = 155/250 (62%)
Query: 32 KSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
K + +++RK S PWVEKYRPK + D+ E++ + +T ++ PH+LFYGPP
Sbjct: 11 KFKTDIERKQF----ESLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPP 66
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
GTGKT+T AIA +L+G Y VLELNASDDRGI+VVR +IKTFA+
Sbjct: 67 GTGKTSTIQAIARKLYGDN-YSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTT---- 121
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
PYK+IILDEADSMT AQ ALRR +E Y+K TRF +CNY+ +II L SRC +FRF
Sbjct: 122 --VPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRF 179
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITS 270
PL R+ I +E + +D++A++ + + GD+R+ + LQ + ++IT
Sbjct: 180 SPLPTPPTEIRLKEIIEKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITE 239
Query: 271 KDLISVSGYP 280
+ + +GYP
Sbjct: 240 EAIYKCTGYP 249
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 106/231 (45%), Positives = 146/231 (63%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS++ M R+ I
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + + L ++++GD+R+ + LQ F ++ ++ GYP
Sbjct: 184 EAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYP 233
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 104/231 (45%), Positives = 154/231 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ +RG +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KRG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 192 ENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGK-VTEETVYTCTGHP 241
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 107/250 (42%), Positives = 163/250 (65%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
E S + ++ A +++ PWVEKYRP+ + D+ ++++ + + PH+L YGP
Sbjct: 2 ETSAQQEQQPAAAKIRNL-PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGP 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA A QL+ + + S VLELNASDDRGI++VR I +FA+ ++G
Sbjct: 61 PGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KKG- 117
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
+K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FR
Sbjct: 118 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 172
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
F PL+ E+M R+ H+ EE ++L + + L ++S GD+RRA+ LQ FG +T
Sbjct: 173 FGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFGK-VTE 231
Query: 271 KDLISVSGYP 280
+ + + +G+P
Sbjct: 232 ETVYTCTGHP 241
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 107/250 (42%), Positives = 163/250 (65%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
E S + ++ A +++ PWVEKYRP+ + D+ ++++ + + PH+L YGP
Sbjct: 2 ETSAQQEQQPAAAKIRNL-PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGP 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA A QL+ + + S VLELNASDDRGI++VR I +FA+ ++G
Sbjct: 61 PGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KKG- 117
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
+K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FR
Sbjct: 118 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 172
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
F PL+ E+M R+ H+ EE ++L + + L ++S GD+RRA+ LQ FG +T
Sbjct: 173 FGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFGK-VTE 231
Query: 271 KDLISVSGYP 280
+ + + +G+P
Sbjct: 232 ETVYTCTGHP 241
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 103/231 (44%), Positives = 154/231 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 192 ENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGK-VTEETVYTCTGHP 241
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 103/231 (44%), Positives = 154/231 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 192 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFGK-VTEETVYTCTGHP 241
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 102/231 (44%), Positives = 154/231 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTRTIF--KKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGK-VTEETVYTCTGHP 242
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 103/231 (44%), Positives = 154/231 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 35 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ ++G +K++ILDEAD+MT+
Sbjct: 95 KEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF--KKG------FKLVILDEADAMTQ 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 147 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 207 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFGK-VTEETVYTCTGHP 256
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 101/231 (43%), Positives = 154/231 (66%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 15 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKD 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+VVR I +FA+ ++G +K++ILDEAD+MT+
Sbjct: 75 KEFNSMVLELNASDDRGIDVVRGPILSFASTRTIF--KKG------FKLVILDEADAMTQ 126
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS+ M R+ H+ +
Sbjct: 127 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQ 186
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + + ++S GD+RR++ LQ +G +T + + + +G+P
Sbjct: 187 ESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGK-VTEETVYTCTGHP 236
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 102/235 (43%), Positives = 150/235 (63%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP ++DV ++++ L + + PHMLFYGPPGTGKT+T LA A +
Sbjct: 20 ESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARK 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP Y+++++ELNASDDRGI+ VR +IK FA+ R + +K+IILDEAD
Sbjct: 80 IYGPN-YRNQLMELNASDDRGIDAVREQIKNFAST-------RQIF-ASTFKMIILDEAD 130
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQNALRR +E Y+K RF ICNYI++I + SRC +FRF+PL + + V H
Sbjct: 131 AMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDH 190
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ E N+D +A + +S+GD+R+A+ LQ + I + + G+P
Sbjct: 191 VIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQACHAAY-DHIDVSAIYNCVGHP 244
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 104/241 (43%), Positives = 151/241 (62%)
Query: 24 STTQSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
+ Q S + + + KR A PV Q + PWVEKYRP + DV+ ++++ + +E
Sbjct: 17 NAVQFSSDNTGAKHKRAAADLPVEAQDNLPWVEKYRPNTLDDVSGHKDILATINRFVEAN 76
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA- 139
PH+L YGPPGTGKT+T LA+A +++G + + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 77 QLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFAST 136
Query: 140 --VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ + G +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY +
Sbjct: 137 KQIFSMAPSATGKSSLASFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHK 196
Query: 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
+ L SRC +FRF PL E+ + + + +E + + EA+ +L ++S+GD+RRA+ L
Sbjct: 197 LSPALLSRCTRFRFSPLKEQDIRVLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVL 256
Query: 258 Q 258
Q
Sbjct: 257 Q 257
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 106/232 (45%), Positives = 144/232 (62%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L + N PH++ G PG GKTT+ L +AH L GP
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 82 A-YKEGVLELNASDERGIDVVRNRIKAFA-------QKKVILPPGRHKIIILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L+++ + R+L+IC
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKA 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
E +N + L+ L ++GD+R+A+ LQ FG + +++ V+ P+
Sbjct: 194 EKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGL-VNGENVFRVADQPS 244
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 113/256 (44%), Positives = 152/256 (59%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQ-PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
TQ+ +DE K P + + PWVEKYRP ++ ++ EE V L N P+
Sbjct: 44 TQADGPPKKDETAPK--PTTTAYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPN 101
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
++ GPPGTGKTT+ L +A L GP + K VLELNAS+DRGI+VVR KIK FA
Sbjct: 102 IIIAGPPGTGKTTSILCLARALLGPAM-KDAVLELNASNDRGIDVVRNKIKMFA------ 154
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q++ P +KIIILDEADSMT+ AQ ALRRTME YSK TRF CN +IIEP+ S
Sbjct: 155 -QQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQS 213
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCA R+ L +E + R+ + +E L++ + L + +QGD+R+A+ LQ F
Sbjct: 214 RCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQSTNSGF 273
Query: 265 GSSITSKDLISVSGYP 280
G I S+++ V P
Sbjct: 274 GY-INSENVFKVCDEP 288
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 107/216 (49%), Positives = 135/216 (62%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK+++D+ EE V L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 10 PWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGD 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y +ELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 70 EHYHQATMELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRQKIIILDEADSMTP 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRT+E YS TRF F CN S+IIEPL SRCA R+ LS+E + +R+L I
Sbjct: 123 GAQQALRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKM 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + E L L ++GD+R+AI LQ FG
Sbjct: 183 EDVKYNTEGLQALIFTAEGDMRQAINNLQSTVAGFG 218
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 101/230 (43%), Positives = 146/230 (63%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + PWVEKYRP+ + DVA +++ + PH+L YGPPGTGKT+T LA+
Sbjct: 33 PPQSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAV 92
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+GP+ Y++ +LELNASDDRGI+VVR +I+ FA+ S + K+++LD
Sbjct: 93 ARKLYGPK-YRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSS------VKLVLLD 145
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQ ALRR +E Y+K TRF I N++++II L SRC +FRF PL MS R
Sbjct: 146 EADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQR 205
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
+ H+ E L + L+ L +S GD+R+A+ LQ + + IT ++
Sbjct: 206 LKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQ-STHMASKEITEEE 254
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 108/245 (44%), Positives = 147/245 (60%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E K A +S PW+EKYRP + K++ E+ V L+ N P+++ GPPG GK
Sbjct: 3 EEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++ P
Sbjct: 63 TTTIQCLARILLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPRGR 114
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+KI+ILDEADSMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA RF LS
Sbjct: 115 HKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLS 174
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ + ++++ + E LN + L + +QGD+R+ + LQ A+ FG IT++++
Sbjct: 175 DAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGD-ITAENVFK 233
Query: 276 VSGYP 280
V P
Sbjct: 234 VCDEP 238
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 98/212 (46%), Positives = 133/212 (62%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + ++ PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP-CPP--YKIIILDEADS 166
+ S VLELNASDDRGINV+R +IKTFA + + Y C K+IILDEAD
Sbjct: 74 KR-SSFVLELNASDDRGINVIRDQIKTFA-------ESKNHYTTCEKTTLKLIILDEADH 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT AQNA+RR ME Y+K RF +CNY+++I + SRC FRF PL +E M ++ L I
Sbjct: 126 MTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDI 185
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E +NL + +L + GD+RR + LQ
Sbjct: 186 AKSENVNLTEGGIDSLIRVGHGDMRRILNCLQ 217
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 98/212 (46%), Positives = 133/212 (62%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + ++ PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP-CPP--YKIIILDEADS 166
+ S VLELNASDDRGINV+R +IKTFA + + Y C K+IILDEAD
Sbjct: 74 KR-SSFVLELNASDDRGINVIRDQIKTFA-------ESKNHYTTCEKTTLKLIILDEADH 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT AQNA+RR ME Y+K RF +CNY+++I + SRC FRF PL +E M ++ L I
Sbjct: 126 MTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDI 185
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E +NL + +L + GD+RR + LQ
Sbjct: 186 AKSENVNLTEGGIDSLIRVGHGDMRRILNCLQ 217
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 99/210 (47%), Positives = 137/210 (65%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMT 168
Y + VLELNASDDRGI+VVR +IK FA+ + S +G +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS---KG------FKLIILDEADAMT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL +E + R+ ++
Sbjct: 124 NAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLV 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E L L A L +S GD+RR + LQ
Sbjct: 184 HEKLKLSPNAEKALIELSNGDMRRVLNVLQ 213
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 106/233 (45%), Positives = 142/233 (60%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L
Sbjct: 14 NEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSM
Sbjct: 74 GTN-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRT+E YS TRF CN ++IIEP+ SRCA RF LS++ + R+L +
Sbjct: 126 TSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVV 185
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + E L + + GD+R+A+ LQ F S + +++ V P
Sbjct: 186 AAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF-SFVNQENVFKVCDQP 237
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 106/231 (45%), Positives = 143/231 (61%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + SR++++ +
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEK 203
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L + +QGD+R+A+ LQ FG I S+++ V P
Sbjct: 204 EKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGY-INSENVFKVCDEP 253
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 108/231 (46%), Positives = 143/231 (61%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ +V E+ V L + N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 42 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 101
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 102 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 153
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + +R+L I +
Sbjct: 154 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEK 213
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L + +QGD+R+A+ LQ FG I S+++ V P
Sbjct: 214 EDVPYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKVCDEP 263
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 106/231 (45%), Positives = 142/231 (61%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + +R+L + +
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEK 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L + +QGD+R+A+ LQ FG I S+++ V P
Sbjct: 207 EKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKVCDEP 256
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 106/231 (45%), Positives = 143/231 (61%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L + N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 95 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ LS+ + +R+L + +
Sbjct: 147 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQ 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L + +QGD+R+A+ +Q FG I S+++ V P
Sbjct: 207 EKVPYTDDGLEAVIFTAQGDMRQALNNVQSTFSGFGF-INSENVFKVCDEP 256
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 106/231 (45%), Positives = 143/231 (61%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L + N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 47 PWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 106
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 107 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 158
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ LS+ + +R+L + +
Sbjct: 159 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQ 218
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L + +QGD+R+A+ +Q FG I S+++ V P
Sbjct: 219 EKVPYTDDGLEAVIFTAQGDMRQALNNVQSTFSGFGF-INSENVFKVCDEP 268
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 105/231 (45%), Positives = 143/231 (61%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 AL-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + +R++++ +
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEK 203
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L + +QGD+R+A+ LQ FG I S+++ V P
Sbjct: 204 EKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGY-INSENVFKVCDEP 253
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 104/231 (45%), Positives = 143/231 (61%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ E+ V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K +LELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 97 AL-KDAMLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 148
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + +R++++ +
Sbjct: 149 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEK 208
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L + +QGD+R+A+ LQ FG I S+++ V P
Sbjct: 209 ERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVCDEP 258
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 94/222 (42%), Positives = 138/222 (62%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP +++V Q+E+V + +ET PH+LFYGP GTGKT+T +A+A +++G
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYGATN 85
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTED 170
YK+ +LELNASDDRGI+VVR +IK FA+ + + +K+IILDEAD+MT
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNV 145
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQN+LRR +E ++K RF + NY ++ L SRC +FRF P+ + R+ + +E
Sbjct: 146 AQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIKE 205
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
+N+ EA+ L +S GD+RRA+ LQ G +D
Sbjct: 206 NVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEED 247
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 105/232 (45%), Positives = 137/232 (59%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E +
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
R+L I E + + L + ++GD+R+AI LQ G + + D
Sbjct: 173 KRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA--GHGLVNAD 222
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 104/235 (44%), Positives = 140/235 (59%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK + D+ E +V L N P+++ GPPG GKTT+ A+A +
Sbjct: 7 QQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARE 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G ++ K VLELNASD+RGI+VVR +IKTFA V + R +KIIILDEAD
Sbjct: 67 LLGDKV-KEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGR-------HKIIILDEAD 118
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+ AQ ALRRTME Y+K TRF CN +IIEP+ SRCA R+ LS + +RV
Sbjct: 119 SMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKE 178
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ E +N D L + +QGD+R+A+ LQ + + ++++ V P
Sbjct: 179 VAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQATVNAY-ELVNKENVLKVCDEP 232
>UNIPROTKB|C9JTT7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925397
ProteinModelPortal:C9JTT7 SMR:C9JTT7 STRING:C9JTT7
Ensembl:ENST00000447345 ArrayExpress:C9JTT7 Bgee:C9JTT7
Uniprot:C9JTT7
Length = 167
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 98/163 (60%), Positives = 116/163 (71%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTM
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTM 167
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 101/231 (43%), Positives = 138/231 (59%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ EE V L + + N P+++ GPPGTGKT++ L +A L G
Sbjct: 21 PWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLGA 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK V ELNASDDR ++VVR KIK+FA ++ P +KIIILDE DSMT
Sbjct: 81 N-YKEAVYELNASDDRTLDVVRDKIKSFA-------MKKVTLPAGRHKIIILDEVDSMTS 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR ME YS TRF F CN ++IIEP+ SRCA RF LS+ + +R+ +
Sbjct: 133 GAQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQI 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L+ + ++GD+R+A+ LQ FG I ++++ V P
Sbjct: 193 EKVPYTDDGLAAIIFTAEGDMRQALNNLQATHSGFGL-INAENVTKVCDQP 242
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 100/249 (40%), Positives = 148/249 (59%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
ED K ++ + ++ W+EKYRP+ + +V V+ L + + + N P++L G PGT
Sbjct: 3 EDSFKNRL--LKRNIDIWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGT 60
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
GKTT+ L +A ++ G + K+ VLELNASDDRGINV+R +IK+FA + P
Sbjct: 61 GKTTSILCLASEMLGNQAKKA-VLELNASDDRGINVIRDRIKSFAKEIIS-------LPP 112
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
+KIIILDE DSMT AQ +LRR ME YS TRF CN +II+ L SRCA R+
Sbjct: 113 GKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFK 172
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD- 272
LS++ + R+L IC+ E + + L L+ I+ GDLR+A+ LQ G + +K+
Sbjct: 173 LSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAVNCLQSTYA--GLEVINKEN 230
Query: 273 LISVSGYPT 281
++ + P+
Sbjct: 231 VLHICDIPS 239
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 100/249 (40%), Positives = 148/249 (59%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
ED K ++ + ++ W+EKYRP+ + +V V+ L + + + N P++L G PGT
Sbjct: 3 EDSFKNRL--LKRNIDIWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGT 60
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
GKTT+ L +A ++ G + K+ VLELNASDDRGINV+R +IK+FA + P
Sbjct: 61 GKTTSILCLASEMLGNQAKKA-VLELNASDDRGINVIRDRIKSFAKEIIS-------LPP 112
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
+KIIILDE DSMT AQ +LRR ME YS TRF CN +II+ L SRCA R+
Sbjct: 113 GKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFK 172
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD- 272
LS++ + R+L IC+ E + + L L+ I+ GDLR+A+ LQ G + +K+
Sbjct: 173 LSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAVNCLQSTYA--GLEVINKEN 230
Query: 273 LISVSGYPT 281
++ + P+
Sbjct: 231 VLHICDIPS 239
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 95/200 (47%), Positives = 127/200 (63%)
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
N P+++ GPPGTGKTT+ L +A L GP L K VLELNAS+DRGI+VVR KIK FA
Sbjct: 9 NVPNIIIAGPPGTGKTTSILCLARALLGPAL-KDAVLELNASNDRGIDVVRNKIKMFA-- 65
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
Q++ P +KIIILDEADSMT+ AQ ALRRTME YSK TRF CN +IIE
Sbjct: 66 -----QQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE 120
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRCA R+ L++ + +R+L++ +E + + L + +QGD+R+A+ LQ
Sbjct: 121 PIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQST 180
Query: 261 ARLFGSSITSKDLISVSGYP 280
FG I S+++ V P
Sbjct: 181 FSGFGF-INSENVFKVCDEP 199
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 74/165 (44%), Positives = 112/165 (67%)
Query: 116 VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
VLELNASDDRGI+++R I +FA+ ++G +K++ILDEAD+MT+DAQNAL
Sbjct: 2 VLELNASDDRGIDIIRGPILSFASTRTIF--KKG------FKLVILDEADAMTQDAQNAL 53
Query: 176 RRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD 235
RR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ EE +++
Sbjct: 54 RRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDIS 113
Query: 236 AEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 114 EDGMKALVTLSSGDMRRALNILQSTNMAFGK-VTEETVYTCTGHP 157
>UNIPROTKB|C9JXZ7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC112907
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00795756
ProteinModelPortal:C9JXZ7 SMR:C9JXZ7 STRING:C9JXZ7
Ensembl:ENST00000427785 HOGENOM:HOG000185875 ArrayExpress:C9JXZ7
Bgee:C9JXZ7 Uniprot:C9JXZ7
Length = 123
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 67/118 (56%), Positives = 82/118 (69%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKV 123
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 190 (71.9 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 52/150 (34%), Positives = 82/150 (54%)
Query: 117 LELNASDDRGIN---VVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTEDAQ 172
LE+ SD G N V++ +K A + V + G YK +I++EA+S+T+DAQ
Sbjct: 94 LEITPSD-MGNNDRIVIQELLKEVAQMEQVDFQDSKDGL-AHRYKCVIINEANSLTKDAQ 151
Query: 173 NALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGL 232
ALRRTME YSK R +C+ +S II P+ SRC R S+ +S+ + + E +
Sbjct: 152 AALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERI 211
Query: 233 NLDA-EALSTLSSISQGDLRRAITYLQGAA 261
L+ + L ++ S G+LR ++ L+ A
Sbjct: 212 QLETKDILKRIAQASNGNLRVSLLMLESMA 241
Score = 160 (61.4 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
WV+KYRPK + ++H EE+ L + + + PH+L YGP GTGK T +A+ +FGP
Sbjct: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
Query: 110 ELYKSRV 116
+Y+ ++
Sbjct: 64 GVYRLKI 70
>UNIPROTKB|F1P3C0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0046683 "response
to organophosphorus" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AADN02005263 IPI:IPI00593478 PRIDE:F1P3C0
Ensembl:ENSGALT00000027564 Uniprot:F1P3C0
Length = 356
Score = 207 (77.9 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 54/141 (38%), Positives = 76/141 (53%)
Query: 117 LELNASDDRGIN---VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD G N V++ +KT V Q+ +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSD-AGNNDRVVIQELLKT-----VAQSQQLETSTQRDFKVVLLTEVDKLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233
ALRRTME Y R CN IS+II P+ SRC R S E + + +C +EGLN
Sbjct: 147 ALRRTMEKYMATCRLILCCNSISKIIGPIQSRCLSVRVPAPSIEDICHVLSSVCKKEGLN 206
Query: 234 LDAEALSTLSSISQGDLRRAI 254
L E L+ S +LR+A+
Sbjct: 207 LPPELAQRLAEKSGRNLRKAL 227
Score = 124 (48.7 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + E L + ++ + PH+L YGP G GK T + + +L+G
Sbjct: 4 WVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 179 (68.1 bits), Expect = 4.5e-25, Sum P(2) = 4.5e-25
Identities = 43/122 (35%), Positives = 66/122 (54%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK-PL 214
YK+++L+E D ++ +AQ++LRRTME YS R CN S++ E + SRC R P
Sbjct: 131 YKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPS 190
Query: 215 SEEVMSSRVLH-ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
EE++ +VL + +E L L + ++ S LRRAI L+ R+ T +
Sbjct: 191 QEEIV--KVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLE-TCRVQNYPFTGNQV 247
Query: 274 IS 275
IS
Sbjct: 248 IS 249
Score = 163 (62.4 bits), Expect = 4.5e-25, Sum P(2) = 4.5e-25
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRPK + V E++ + L + +CPH+LFYGP G+GK T +A+ Q++G
Sbjct: 3 WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAA 139
K +V D G + ++ T ++
Sbjct: 63 AEKVKVENRAWKVDAGSRTIDLELTTLSS 91
>ZFIN|ZDB-GENE-020809-3 [details] [associations]
symbol:rfc3 "replication factor C (activator 1) 3"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-020809-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
Pfam:PF08542 CTD:5983 HOVERGEN:HBG040509 HSSP:Q8U4J3 EMBL:BC042327
IPI:IPI00734824 RefSeq:NP_958865.1 UniGene:Dr.13362
ProteinModelPortal:Q8AW06 STRING:Q8AW06 PRIDE:Q8AW06 GeneID:259256
KEGG:dre:259256 InParanoid:Q8AW06 NextBio:20804713
ArrayExpress:Q8AW06 Bgee:Q8AW06 Uniprot:Q8AW06
Length = 356
Score = 198 (74.8 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
Identities = 55/143 (38%), Positives = 79/143 (55%)
Query: 117 LELNASDDRGIN--VVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD + V++ IKT A + + S +R +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQR------EFKVVLLTEVDRLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK-PLSEEVMSSRVLH-ICNEEG 231
ALRRTME Y R CN S++I P+ SRC R P EEV S VL +C +EG
Sbjct: 147 ALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRVPLPSVEEVCS--VLSGVCRKEG 204
Query: 232 LNLDAEALSTLSSISQGDLRRAI 254
L L E ++ S +LR+A+
Sbjct: 205 LLLPPELAKQIAEKSGRNLRKAL 227
Score = 134 (52.2 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + + +L+G
Sbjct: 4 WVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
>UNIPROTKB|Q2TBV1 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0046683
"response to organophosphorus" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 EMBL:BC109606
IPI:IPI00713322 RefSeq:NP_001033636.1 UniGene:Bt.16980
ProteinModelPortal:Q2TBV1 STRING:Q2TBV1 PRIDE:Q2TBV1
Ensembl:ENSBTAT00000014278 GeneID:515602 KEGG:bta:515602 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 InParanoid:Q2TBV1 OMA:TRIMCLL OrthoDB:EOG4T4CVP
NextBio:20871915 Uniprot:Q2TBV1
Length = 356
Score = 196 (74.1 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 49/140 (35%), Positives = 74/140 (52%)
Query: 117 LELNASDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNA 174
LE+N SD + V++ +KT V Q+ +K+++L E D +T+DAQ+A
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKT-----VAQSQQLETSSQKDFKVVLLTEVDKLTKDAQHA 147
Query: 175 LRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL 234
LRRTME Y R CN S++I P+ SRC R S E + + +C +EGLNL
Sbjct: 148 LRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNL 207
Query: 235 DAEALSTLSSISQGDLRRAI 254
+ L+ S +LR+A+
Sbjct: 208 PPQLAHRLAEKSCRNLRKAL 227
Score = 132 (51.5 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
>UNIPROTKB|E2R7L0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046683 "response to organophosphorus"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 KO:K10756 GO:GO:0046683 SUPFAM:SSF48019 Pfam:PF08542
CTD:5983 GeneTree:ENSGT00550000075006 OMA:TRIMCLL EMBL:AAEX03014212
RefSeq:XP_534500.3 ProteinModelPortal:E2R7L0
Ensembl:ENSCAFT00000010156 GeneID:477308 KEGG:cfa:477308
NextBio:20852824 Uniprot:E2R7L0
Length = 356
Score = 197 (74.4 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 49/141 (34%), Positives = 78/141 (55%)
Query: 117 LELNASDDRGIN--VVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD + V++ +KT A + + + +R +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRD------FKVVLLTEVDKLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233
ALRRTME Y R CN S++I P+ SRC R S E + + +C +EGLN
Sbjct: 147 ALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLN 206
Query: 234 LDAEALSTLSSISQGDLRRAI 254
L ++ L+ S +LR+A+
Sbjct: 207 LPSQLAHRLAEKSCRNLRKAL 227
Score = 130 (50.8 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
>UNIPROTKB|P40938 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IDA;TAS] [GO:0003689 "DNA clamp loader activity"
evidence=TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0046683 "response to organophosphorus" evidence=IEP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0006200 "ATP catabolic process"
evidence=IDA] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 EMBL:CH471075 KO:K10756 GO:GO:0017111 GO:GO:0046683
GO:GO:0000084 eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722
GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283 GO:GO:0003689
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5983 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:L07541
EMBL:AF484446 EMBL:AL139081 EMBL:AL160394 EMBL:AL161891
EMBL:BC000149 EMBL:CX786577 IPI:IPI00031521 IPI:IPI00373882
PIR:T09573 RefSeq:NP_002906.1 RefSeq:NP_853536.2 UniGene:Hs.115474
ProteinModelPortal:P40938 SMR:P40938 DIP:DIP-36432N IntAct:P40938
MINT:MINT-3015032 STRING:P40938 PhosphoSite:P40938 DMDM:3915601
PaxDb:P40938 PeptideAtlas:P40938 PRIDE:P40938 DNASU:5983
Ensembl:ENST00000380071 Ensembl:ENST00000434425 GeneID:5983
KEGG:hsa:5983 UCSC:uc001uuz.3 GeneCards:GC13P034392 HGNC:HGNC:9971
HPA:HPA030149 MIM:600405 neXtProt:NX_P40938 PharmGKB:PA34340
InParanoid:P40938 PhylomeDB:P40938 ChiTaRS:RFC3 GenomeRNAi:5983
NextBio:23291 ArrayExpress:P40938 Bgee:P40938 CleanEx:HS_RFC3
Genevestigator:P40938 GermOnline:ENSG00000133119 Uniprot:P40938
Length = 356
Score = 197 (74.4 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 49/141 (34%), Positives = 78/141 (55%)
Query: 117 LELNASDDRGIN--VVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD + V++ +KT A + + + +R +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRD------FKVVLLTEVDKLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233
ALRRTME Y R CN S++I P+ SRC R S E + + +C +EGLN
Sbjct: 147 ALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLN 206
Query: 234 LDAEALSTLSSISQGDLRRAI 254
L ++ L+ S +LR+A+
Sbjct: 207 LPSQLAHRLAEKSCRNLRKAL 227
Score = 130 (50.8 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
>RGD|1306832 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=IEA;ISO] [GO:0046683 "response to organophosphorus"
evidence=IEA;ISO] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 RGD:1306832 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC088281
EMBL:CH474108 IPI:IPI00189913 RefSeq:NP_001009629.1 UniGene:Rn.3711
STRING:Q5M830 Ensembl:ENSRNOT00000001444 GeneID:288414
KEGG:rno:288414 UCSC:RGD:1306832 InParanoid:Q5M830 NextBio:628070
Genevestigator:Q5M830 Uniprot:Q5M830
Length = 356
Score = 194 (73.4 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 49/141 (34%), Positives = 78/141 (55%)
Query: 117 LELNASDDRGIN--VVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD + V++ +KT A + + + +R +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRD------FKVVLLTEVDKLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233
ALRRTME Y R CN S++I P+ SRC R S E + S + +C +EGL
Sbjct: 147 ALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLA 206
Query: 234 LDAEALSTLSSISQGDLRRAI 254
L ++ L+ S +LR+A+
Sbjct: 207 LPSKLARRLAEKSCRNLRKAL 227
Score = 134 (52.2 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
>UNIPROTKB|F1RSR4 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046683 "response to organophosphorus" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AEMK01181220 EMBL:CU076062
Ensembl:ENSSSCT00000010246 Uniprot:F1RSR4
Length = 356
Score = 193 (73.0 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
Identities = 48/140 (34%), Positives = 75/140 (53%)
Query: 117 LELNASDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNA 174
LE+N SD + V++ +KT V Q+ +K+++L E D +T+DAQ+A
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKT-----VAQSQQLETNSQKDFKVVLLTEVDKLTKDAQHA 147
Query: 175 LRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL 234
LRRTME Y R CN S++I P+ SRC R S E + + +C +EGL+L
Sbjct: 148 LRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLSL 207
Query: 235 DAEALSTLSSISQGDLRRAI 254
++ L+ S +LR+A+
Sbjct: 208 PSQLARKLAEKSCRNLRKAL 227
Score = 132 (51.5 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
>MGI|MGI:1916513 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 MGI:MGI:1916513 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756
GO:GO:0046683 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC026795
IPI:IPI00665571 RefSeq:NP_081285.1 UniGene:Mm.12553
ProteinModelPortal:Q8R323 SMR:Q8R323 IntAct:Q8R323 STRING:Q8R323
PhosphoSite:Q8R323 PaxDb:Q8R323 PRIDE:Q8R323
Ensembl:ENSMUST00000038131 GeneID:69263 KEGG:mmu:69263
InParanoid:Q8R323 NextBio:328993 Bgee:Q8R323 CleanEx:MM_RFC3
Genevestigator:Q8R323 GermOnline:ENSMUSG00000033970 Uniprot:Q8R323
Length = 356
Score = 191 (72.3 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 49/141 (34%), Positives = 77/141 (54%)
Query: 117 LELNASDDRGIN--VVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
LE+N SD + V++ +KT A + + + +R +K+++L E D +T+DAQ+
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRD------FKVVLLTEVDKLTKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233
ALRRTME Y R CN S++I P+ SRC R S E + S + +C +EGL
Sbjct: 147 ALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLA 206
Query: 234 LDAEALSTLSSISQGDLRRAI 254
L + L+ S +LR+A+
Sbjct: 207 LPSTLARRLAEKSCRNLRKAL 227
Score = 133 (51.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP + + + +E L N ++ + PH+L YGP G GK T + I +L+G
Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIG 63
Query: 111 LYKSRV 116
+ K R+
Sbjct: 64 VEKLRI 69
>FB|FBgn0028700 [details] [associations]
symbol:RfC38 "Replication factor C 38kD subunit" species:7227
"Drosophila melanogaster" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0003689 "DNA clamp loader activity" evidence=ISS]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0022008
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AF160912 UniGene:Dm.19818
ProteinModelPortal:Q7KLW6 IntAct:Q7KLW6 STRING:Q7KLW6 PaxDb:Q7KLW6
PRIDE:Q7KLW6 FlyBase:FBgn0028700 InParanoid:Q7KLW6
OrthoDB:EOG4C2FS4 ArrayExpress:Q7KLW6 Bgee:Q7KLW6 Uniprot:Q7KLW6
Length = 395
Score = 189 (71.6 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 57/164 (34%), Positives = 86/164 (52%)
Query: 117 LELNASD----DRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
LE+N SD DR I++++ +T + + SGQR +K+I++ E D +T+D
Sbjct: 132 LEVNPSDAGMYDRTVVIDLIKQVAQTHQ-IEI-SGQRE-------FKVIVISEGDELTKD 182
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME Y R N SRII + SRC R +E + S + + C E
Sbjct: 183 AQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKRE 242
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
GL L E + S+ +LRRA+ L+ AA++ + T+ I
Sbjct: 243 GLALPVELAKRVVDKSERNLRRALLMLE-AAKVAKAPFTANQEI 285
Score = 135 (52.6 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP- 109
WV+KYRP+++ + ++ L N + ++ PH++FYGP G GK T + + +++G
Sbjct: 43 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSG 102
Query: 110 -ELYKSRVLELNASDDRGINVV 130
E +S + +R + V+
Sbjct: 103 VERLRSETMTFTTPSNRKVEVM 124
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 260 (96.6 bits), Expect = 9.8e-22, P = 9.8e-22
Identities = 75/245 (30%), Positives = 124/245 (50%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIA------HQL 106
K+RPK ++ QE +V++L N + T H LF GP GTGKTTTA +A H +
Sbjct: 8 KWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNCEHPV 67
Query: 107 FG------PELY----KS--RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
G P +S V E++A+ +RGI+ +R +++ + G+
Sbjct: 68 EGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIR-ELRESIKLVPAQGK-------- 118
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
YK+ I+DE +T +A NAL +T+E + F +++ + SRC +F FK +
Sbjct: 119 -YKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRI 177
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
S + + + +I +E L +AEAL ++ S+G LR A++ L +F IT +D +
Sbjct: 178 STKTIWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALS-LMDQILVFNPKITVEDTL 236
Query: 275 SVSGY 279
V G+
Sbjct: 237 KVLGF 241
>CGD|CAL0004366 [details] [associations]
symbol:RFC5 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0004366
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
eggNOG:COG0470 EMBL:AACQ01000031 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_719478.1 ProteinModelPortal:Q5AD38 STRING:Q5AD38
GeneID:3638890 KEGG:cal:CaO19.2029 Uniprot:Q5AD38
Length = 362
Score = 170 (64.9 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 55/156 (35%), Positives = 81/156 (51%)
Query: 111 LYKSRVLELNASDDRGIN---VVRTKIKTFAAVA-VG-SGQRRGGYPCPPYKIIILDEAD 165
L S LE+ SD G N V++ +K A+ V + Q R + +KI+I++EAD
Sbjct: 87 LSSSNHLEITPSD-MGNNDRVVIQDLLKDVASTEQVDFANQSRAKHR---FKIVIINEAD 142
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
S++ DAQ ALRRTME YS R +CN IS II P+ SR R S + ++ + H
Sbjct: 143 SLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIPSPSVDNINHILGH 202
Query: 226 ICNEEGLNL----DAEA---LSTLSSISQGDLRRAI 254
+ +E L D+E S ++ S +LRR +
Sbjct: 203 VAEKESLKFSTHNDSEINHFYSKIAETSNRNLRRCL 238
Score = 137 (53.3 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WV+KYRP+ + + + + + L ++ + PH+L YGP G+GK T +++FGP+
Sbjct: 4 WVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFGPQ 63
Query: 111 LYKSRV 116
+ K ++
Sbjct: 64 VEKLKI 69
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 187 (70.9 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 46/121 (38%), Positives = 68/121 (56%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK-PL 214
+K+++L EADS+T DAQ+ LRRTME Y+ + C +SRIIEPL SRC P
Sbjct: 131 FKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPT 190
Query: 215 SEEVMSSRVLH-ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
E+V ++VL + E L L + S+G+LRRAI + A R+ S ++ +
Sbjct: 191 DEDV--TKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTE-ALRMENESGVAESV 247
Query: 274 I 274
+
Sbjct: 248 V 248
Score = 109 (43.4 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 51 WVEKYRPKQV--KD-VAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQL 106
WV+KYRPK + KD V + E L +A+C PH+LF GP G GK T + +L
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLK--FLSADCMPHLLFCGPSGAGKKTRIKCLLREL 61
Query: 107 FGPELYKSRVL 117
+G + K++++
Sbjct: 62 YGVGVEKTQLI 72
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 187 (70.9 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 46/121 (38%), Positives = 68/121 (56%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK-PL 214
+K+++L EADS+T DAQ+ LRRTME Y+ + C +SRIIEPL SRC P
Sbjct: 131 FKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPT 190
Query: 215 SEEVMSSRVLH-ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
E+V ++VL + E L L + S+G+LRRAI + A R+ S ++ +
Sbjct: 191 DEDV--TKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTE-ALRMENESGVAESV 247
Query: 274 I 274
+
Sbjct: 248 V 248
Score = 109 (43.4 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 51 WVEKYRPKQV--KD-VAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQL 106
WV+KYRPK + KD V + E L +A+C PH+LF GP G GK T + +L
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLK--FLSADCMPHLLFCGPSGAGKKTRIKCLLREL 61
Query: 107 FGPELYKSRVL 117
+G + K++++
Sbjct: 62 YGVGVEKTQLI 72
>POMBASE|SPBC83.14c [details] [associations]
symbol:rfc5 "DNA replication factor C complex subunit
Rfc5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] InterPro:IPR008921 InterPro:IPR013748
PomBase:SPBC83.14c GO:GO:0005829 EMBL:CU329671 GO:GO:0006281
GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596 KO:K10756
eggNOG:COG0470 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 HOGENOM:HOG000224153 OMA:TRIMCLL PIR:T40703
RefSeq:NP_595646.1 ProteinModelPortal:O94697 STRING:O94697
EnsemblFungi:SPBC83.14c.1 GeneID:2540215 KEGG:spo:SPBC83.14c
OrthoDB:EOG4R273P NextBio:20801347 Uniprot:O94697
Length = 358
Score = 165 (63.1 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 39/104 (37%), Positives = 59/104 (56%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK-PL 214
+K+++++ AD +T DAQ ALRRTME YS R I N S+IIEP+ SR R P
Sbjct: 128 FKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPT 187
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
EE++ + I +GL L+ +++ +LR+AI L+
Sbjct: 188 PEEIILV-MSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLE 230
Score = 131 (51.2 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+++YRPK + + + +++ L + T PH+L YGP G GK T +AI +L+GP
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPG 62
Query: 111 LYKSRV 116
K ++
Sbjct: 63 SEKLKI 68
>ASPGD|ASPL0000001589 [details] [associations]
symbol:AN6300 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AACD01000107 EMBL:BN001301 KO:K10756 GO:GO:0017111
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224153
OMA:TRIMCLL OrthoDB:EOG4R273P RefSeq:XP_663904.1
ProteinModelPortal:Q5AZI0 STRING:Q5AZI0
EnsemblFungi:CADANIAT00006689 GeneID:2870977 KEGG:ani:AN6300.2
Uniprot:Q5AZI0
Length = 352
Score = 158 (60.7 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 38/99 (38%), Positives = 54/99 (54%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+K+++++EAD +T DAQ ALRRTME YS R + N S II P+ SR R S
Sbjct: 129 FKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTSNIIAPIRSRTLLVRVAAPS 188
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254
EE + + + EG N E ++ S +LRRA+
Sbjct: 189 EEDICTILSTSAKREGWNEAPELNKRIAKESGRNLRRAL 227
Score = 125 (49.1 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
V+K+RP+ + +++ E+ L + ++ + PH+L YGP G GK T +A +L+GP +
Sbjct: 5 VDKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYGPGV 64
Query: 112 YK----SRVLELNASDDRGINVV 130
K +RV + ++ N+V
Sbjct: 65 EKIKIDNRVFQTTSNRKLEFNIV 87
>UNIPROTKB|G4NAB7 [details] [associations]
symbol:MGG_03202 "Replication factor C subunit 5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 EMBL:CM001234 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_003716781.1 ProteinModelPortal:G4NAB7
EnsemblFungi:MGG_03202T0 GeneID:2676506 KEGG:mgr:MGG_03202
Uniprot:G4NAB7
Length = 352
Score = 153 (58.9 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 34/103 (33%), Positives = 57/103 (55%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+K+++++EAD ++ DAQ ALRRTME YS R + N + II P+ SR R S
Sbjct: 129 FKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLLVRVAAPS 188
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E+ + + + +EG + + ++ S +LRRA+ L+
Sbjct: 189 EDEICTVLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLE 231
Score = 130 (50.8 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
V+K+RP+ + + + EE+ L + ++ + PH+L YGP G GK T +A +L+GP +
Sbjct: 5 VDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELYGPGV 64
Query: 112 YK----SRVLELNASDDRGINVV 130
K +RV + +++ N+V
Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIV 87
>GENEDB_PFALCIPARUM|PF11_0117 [details] [associations]
symbol:PF11_0117 "replication factor C subunit
5, putative" species:5833 "Plasmodium falciparum" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 159 (61.0 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 39/108 (36%), Positives = 60/108 (55%)
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
P Y+I + +A+ ++E AQ LRRT+ETY + R ++S+IIEPL SRC R
Sbjct: 124 PMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRVPL 183
Query: 214 LSEEVMSSRVLHICNEEGLNLDA---EALSTLSSISQGDLRRAITYLQ 258
SEE + S + +IC +E ++ E TL + +LR+ I L+
Sbjct: 184 PSEEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGRNLRKCIMALE 231
Score = 120 (47.3 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKY P+ + ++ +++ L + PH++FYG PG GK+T + ++F E
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 111 -LYKSRVLELNASDDRGINVVRT 132
+ + NA + INVV++
Sbjct: 62 KIIRRPECITNAENKININVVQS 84
>UNIPROTKB|Q8IIQ1 [details] [associations]
symbol:PF11_0117 "Replication factor C subunit 5, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 159 (61.0 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 39/108 (36%), Positives = 60/108 (55%)
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
P Y+I + +A+ ++E AQ LRRT+ETY + R ++S+IIEPL SRC R
Sbjct: 124 PMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRVPL 183
Query: 214 LSEEVMSSRVLHICNEEGLNLDA---EALSTLSSISQGDLRRAITYLQ 258
SEE + S + +IC +E ++ E TL + +LR+ I L+
Sbjct: 184 PSEEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGRNLRKCIMALE 231
Score = 120 (47.3 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKY P+ + ++ +++ L + PH++FYG PG GK+T + ++F E
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 111 -LYKSRVLELNASDDRGINVVRT 132
+ + NA + INVV++
Sbjct: 62 KIIRRPECITNAENKININVVQS 84
>UNIPROTKB|H7C5P4 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF48019
EMBL:AC005081 Pfam:PF08542 HGNC:HGNC:9970 ChiTaRS:RFC2
ProteinModelPortal:H7C5P4 Ensembl:ENST00000497430 Uniprot:H7C5P4
Length = 198
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 45/114 (39%), Positives = 68/114 (59%)
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+ AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + +R++++
Sbjct: 2 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 61
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+E + + L + +QGD+R+A+ LQ FG I S+++ V P
Sbjct: 62 IEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVCDEP 114
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 212 (79.7 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 64/231 (27%), Positives = 108/231 (46%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLF 107
Q + K+RP+ + D+ QE V L N L + LF GP GTGKT+T +A +
Sbjct: 4 QVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVN 63
Query: 108 -----GP-ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGY-PC-PPYKI 158
G E + + L+ ++ ++V+ + V + + + Y P YK+
Sbjct: 64 CTTNQGKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRELKEKVQYAPALANYKV 123
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
I+DE ++ A NAL +T+E F I +++ + SRC +F F +S
Sbjct: 124 YIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSD 183
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
MS ++ I EG+N++ EAL ++ + G R LQ A +G+ I+
Sbjct: 184 MSRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTEIS 234
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 207 (77.9 bits), Expect = 9.4e-15, P = 9.4e-15
Identities = 70/254 (27%), Positives = 117/254 (46%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S Q +RP++ +DV Q+ V + L N L H LF GP GTGKTT A A
Sbjct: 2 SYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKA 61
Query: 106 L---FGPELYK---------------SRVLELNASDDRGINVVRT---KIKTFAAVAVGS 144
+ P S VLE++A+ + G++ +R K+K +A AV
Sbjct: 62 INCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVK-YAPSAV-- 118
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
YK+ I+DE ++ A NAL +T+E F +I + S
Sbjct: 119 ----------EYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIIS 168
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RC +F F+ +S + R+ + EG ++ EAL ++ ++G +R A++ + A
Sbjct: 169 RCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYS 228
Query: 265 GSSITSKDLISVSG 278
+T++D+++V+G
Sbjct: 229 DERVTTEDVLAVTG 242
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 206 (77.6 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 65/238 (27%), Positives = 112/238 (47%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL-----F 107
K+RP+ D+ QE V R L N +++ H LF G G GKT++A +A L
Sbjct: 9 KWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCEQGM 68
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPP----YKIIILD 162
PE V G +V +I + V + R P YKI I+D
Sbjct: 69 SPE--PCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIID 126
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK--PLSEEVMS 220
E ++ +A NAL +T+E +F F ++ + SRC +F F+ PL++ V
Sbjct: 127 EVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVV-- 184
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+R+ +I + EG+++ E+L+ ++ G +R +++ L G ++ D++S+ G
Sbjct: 185 ARLRYIVDREGISISDESLAVVARKGDGSMRDSLSVLDQVLAFCGETVNDDDVVSLLG 242
>TAIR|locus:2012497 [details] [associations]
symbol:AT1G14460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 EMBL:CP002684
GO:GO:0005886 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 IPI:IPI00525486 RefSeq:NP_172898.2
UniGene:At.43554 UniGene:At.69297 ProteinModelPortal:F4HW65
SMR:F4HW65 PRIDE:F4HW65 EnsemblPlants:AT1G14460.1 GeneID:838008
KEGG:ath:AT1G14460 OMA:REVIAYK Uniprot:F4HW65
Length = 1116
Score = 208 (78.3 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 80/297 (26%), Positives = 141/297 (47%)
Query: 1 MRANFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV 60
+ +FG+I +++ + S +S + E+E + P +S Q +KY+P
Sbjct: 377 LSTDFGEIDLEAQSRLDG-RRWSSCCKSQDGEREEEEEGGSTP--ESIQSLSQKYKPMFF 433
Query: 61 KDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL------------- 106
++ Q VV+ L N ++ H+ LF GP GTGKT+TA ++ L
Sbjct: 434 DELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCG 493
Query: 107 FGPE-----LYKSR-VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+ E L KSR +LEL+A G VR +K +A S QR YK+ +
Sbjct: 494 YCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQR--------YKVFV 545
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLASRCAKFRFKPLSEEV 218
+DE + +L + +E + + +F F+C + + + SRC K+ F + +
Sbjct: 546 IDECHLLPSRTWLSLLKFLE--NPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGD 603
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ R+ I ++E L+++++AL ++ + G LR A T L+ + L G IT DL++
Sbjct: 604 IVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLS-LMGKRITV-DLVN 658
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 199 (75.1 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 63/213 (29%), Positives = 107/213 (50%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY 112
KYRP+ ++V QE V +L N L+ H LF G GTGKTTTA ++F ++
Sbjct: 6 KYRPQTFEEVVAQEYVKEILLNQLQNGAIKHGYLFCGGAGTGKTTTA-----RIFAKDVN 60
Query: 113 KS--RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
K +E++A+ + G+ VR I+ ++ S +K+ I+DE ++
Sbjct: 61 KGLGSPIEIDAASNNGVENVRNIIEDSRYKSMDS----------EFKVYIIDEVHMLSTG 110
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC--- 227
A NAL +T+E S T F +I + + SR +F F + + + +++ I
Sbjct: 111 AFNALLKTLEEPSSGTVFILCTTDPQKIPDTILSRVQRFDFTRIDNDDIVNQLQFIIESE 170
Query: 228 NEEGL--NLDAEALSTLSSISQGDLRRAITYLQ 258
NEEG + + +ALS + ++ G +R +IT L+
Sbjct: 171 NEEGAGYSYERDALSFIGKLANGGMRDSITRLE 203
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 139 (54.0 bits), Expect = 8.5e-14, Sum P(2) = 8.5e-14
Identities = 31/105 (29%), Positives = 56/105 (53%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
YK+ I+DE ++ + NAL +T+E +F F I ++ + SRC +F K L
Sbjct: 158 YKVYIIDEVHMLSNASFNALLKTLEEPPPHLKFIFATTEIRKVPVTVLSRCQRFDLKRLD 217
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL-QG 259
+S + ++ EG N+ EAL+ ++ ++G +R ++ L QG
Sbjct: 218 SGELSRHLGNVAQSEGANVSEEALALIARAAEGSVRDGLSLLDQG 262
Score = 111 (44.1 bits), Expect = 8.5e-14, Sum P(2) = 8.5e-14
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL 106
KYRP++ +D+ QE +VR L+N ET H + G G GKTTTA +A L
Sbjct: 35 KYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGL 88
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 199 (75.1 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 62/244 (25%), Positives = 114/244 (46%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIA-- 103
S+ + KYRP KD+ QE +VRVL N P +L G G GKTT A I+
Sbjct: 12 STMSFALKYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARIISMC 71
Query: 104 -HQLFGPELYKSRVLELNASDDRGIN---VVRTKIKTFAAVA-VGSGQRRGGY-PCPP-Y 156
+ + GP + N + N V+ + ++ V Y P +
Sbjct: 72 LNCISGPTSDPCNTCQ-NCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSKF 130
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216
K+ I+DE ++ A NAL + +E + +F + +I + SRC +F F+ +S
Sbjct: 131 KVYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRIST 190
Query: 217 EVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS- 275
+ + + + +E ++ D E++ ++ + G +R A++ L+ AA ++ + I S+++
Sbjct: 191 DKLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAA-IYSNKILSENITKE 249
Query: 276 VSGY 279
+ GY
Sbjct: 250 MLGY 253
>TAIR|locus:2121934 [details] [associations]
symbol:AT4G24790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 GO:GO:0005524 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 IPI:IPI00532502
RefSeq:NP_001119046.1 RefSeq:NP_194210.2 UniGene:At.54505
ProteinModelPortal:F4JRP8 SMR:F4JRP8 PRIDE:F4JRP8
EnsemblPlants:AT4G24790.1 EnsemblPlants:AT4G24790.2 GeneID:828581
KEGG:ath:AT4G24790 OMA:TWLTVAL Uniprot:F4JRP8
Length = 857
Score = 197 (74.4 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 62/228 (27%), Positives = 111/228 (48%)
Query: 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFG-PE 110
+K+RPK ++ QE VV+ L +T+ + LF+GP GTGKT+T+ A L +
Sbjct: 243 QKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCLSQ 302
Query: 111 LYKSRVLELNAS-----DDRGINVVRTKI-KTFAAVAVGSGQRRGGYP--CPPYKIIILD 162
SR L + RG +V+ T K + S + P +K+ I+D
Sbjct: 303 AAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKSASLPPVSSRFKVFIID 362
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
E + ++ L +++ +S+ + F + + + ++ + SR K+ F + + +S++
Sbjct: 363 ECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADISTK 422
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
+ IC EEG++ D A+ ++S S G LR A L + L G IT+
Sbjct: 423 LAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLS-LLGKRITT 469
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 194 (73.4 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 70/254 (27%), Positives = 117/254 (46%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S Q +RP++ +DV QE + + L N L H LF GP GTGKT+ A A
Sbjct: 2 SYQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKA 61
Query: 106 L---FGP------ELYK---------SRVLELNASDDRGINVVRT---KIKTFAAVAVGS 144
+ P E S V+E++A+ + G++ +R K+K FA AV
Sbjct: 62 VNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVK-FAPSAV-- 118
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
YK+ I+DE ++ A NAL +T+E + F +I + S
Sbjct: 119 ----------TYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIIS 168
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RC +F FK ++ + + R+ I + E L ++ +L ++S + G +R A++ L A
Sbjct: 169 RCQRFDFKRITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFS 228
Query: 265 GSSITSKDLISVSG 278
G + +D + ++G
Sbjct: 229 GDILKVEDALLITG 242
>TAIR|locus:504956441 [details] [associations]
symbol:RFC1 "replication factor C1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0031935
"regulation of chromatin silencing" evidence=IMP] [GO:0051570
"regulation of histone H3-K9 methylation" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0007126
"meiosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR010372 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF06144 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0009737 GO:GO:0007126 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006260 GO:GO:0006974 GO:GO:0051570
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
GO:GO:0003887 EMBL:AL589883 HSSP:P26996 GO:GO:0009360
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 OMA:KLRMDER
GO:GO:0031935 EMBL:BT014965 IPI:IPI00543426 RefSeq:NP_680188.1
UniGene:At.45635 ProteinModelPortal:Q9C587 SMR:Q9C587 STRING:Q9C587
PaxDb:Q9C587 PRIDE:Q9C587 EnsemblPlants:AT5G22010.1 GeneID:832261
KEGG:ath:AT5G22010 TAIR:At5g22010 HOGENOM:HOG000085054
InParanoid:Q9C587 PhylomeDB:Q9C587 ProtClustDB:CLSN2690182
Genevestigator:Q9C587 Uniprot:Q9C587
Length = 956
Score = 156 (60.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 50/188 (26%), Positives = 93/188 (49%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG---INVVR-------TKI 134
+L G PG GKTT+A ++ Q+ G + +E+NASD RG N+ + +
Sbjct: 396 VLLSGTPGIGKTTSAKLVS-QMLG-----FQAVEVNASDSRGKANSNIAKGIGGSNANSV 449
Query: 135 KTFAA-VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC- 192
K A+ + R +P ++I+DE D M+ + + + + K+++ IC
Sbjct: 450 KELVNNEAMAANFDRSKHP---KTVLIMDEVDGMSAGDRGGVADLIASI-KISKIPIICI 505
Query: 193 --NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDL 250
+ S+ ++ L + C ++ +++ M+ R++HI EGL ++ AL L+ GD+
Sbjct: 506 CNDRYSQKLKSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAERVNGDI 565
Query: 251 RRAITYLQ 258
R A+ LQ
Sbjct: 566 RLAVNQLQ 573
Score = 85 (35.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 30/102 (29%), Positives = 47/102 (46%)
Query: 8 IHKSGKNKSPNFTQKF-STTQSSPEKSEDEVK-------RKMAP------VLQSSQPWVE 53
+ KS +S T+K + ++SP+K E K +K+ P ++++S PW E
Sbjct: 285 VKKSLPERSNKGTEKICAPPKTSPQKEETRGKPLAKSSPKKVPPAKGKNKIIETSLPWTE 344
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
KYRPK ++ + +V L N L H F G GK
Sbjct: 345 KYRPKVPNEIVGNQSLVTQLHNWLSHW---HDQFGGTGSKGK 383
Score = 43 (20.2 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 15/70 (21%), Positives = 30/70 (42%)
Query: 1 MRANFGKIHKSGKNKSPNFTQ-KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQ 59
+R F K H+ G +P T K +++ E + + ++ + + + KY K
Sbjct: 4 IRKWFMKAHEKGNGSAPKSTSSKAGPVKNAAETAPIKSEQASEDLETADRRKTSKYFGKD 63
Query: 60 VKDVAHQEEV 69
V ++EV
Sbjct: 64 KTKVKDEKEV 73
>DICTYBASE|DDB_G0293702 [details] [associations]
symbol:rfc3 "replication factor C subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0293702 GO:GO:0005634
GenomeReviews:CM000155_GR GO:GO:0000166 GO:GO:0003677 GO:GO:0006298
KO:K10756 GO:GO:0017111 EMBL:AAFI02000218 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 OMA:TRIMCLL RefSeq:XP_628996.1
HSSP:P38251 ProteinModelPortal:Q54BN3 STRING:Q54BN3 PRIDE:Q54BN3
EnsemblProtists:DDB0232232 GeneID:8629280 KEGG:ddi:DDB_G0293702
ProtClustDB:CLSZ2429230 Uniprot:Q54BN3
Length = 347
Score = 180 (68.4 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 49/167 (29%), Positives = 86/167 (51%)
Query: 117 LELNASDDRGIN--VVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN 173
+E+N + + V++T IK A + + SG G + KI+IL+E D +++DAQ+
Sbjct: 93 IEINPGEAGSYDRVVIQTIIKEIAQSPPIDSGSL-GAF-----KIVILNEVDKLSKDAQH 146
Query: 174 ALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233
ALRRTME Y+ R C+ +++I+P+ SRC R S+E + + + E +
Sbjct: 147 ALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFD 206
Query: 234 LDAEALSTLSSISQGDLRRAITYLQGA-ARLFGSSITSKDLISVSGY 279
L ++ ++ S G+LR A+ L+ A+ + T L+ Y
Sbjct: 207 LPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQSTELPLLDWENY 253
Score = 144 (55.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W++KY+P + + + ++ L N +++ + PH+L YGP G GK T LA+ +++GP
Sbjct: 3 WIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGPN 62
Query: 111 LYKSRVLELNASDDRGI-NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
K ++ N+ T I + + + G+ G Y + II + A S
Sbjct: 63 ALKLKIDHRTFKHPTSSKNIQITTISSHYHIEINPGEA-GSYDRVVIQTIIKEIAQSPPI 121
Query: 170 DA 171
D+
Sbjct: 122 DS 123
>TAIR|locus:2065299 [details] [associations]
symbol:STI "STICHEL" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0010026 "trichome
differentiation" evidence=IMP] [GO:0010091 "trichome branching"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0003002
"regionalization" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0009888 "tissue development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010638 "positive regulation of organelle organization"
evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0045595 "regulation of cell
differentiation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048589 "developmental growth" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 GO:GO:0005886 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0010091
EMBL:AC004136 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:AF264023 IPI:IPI00542444
PIR:T00615 RefSeq:NP_565285.1 UniGene:At.19529 HSSP:P06710
ProteinModelPortal:O64728 SMR:O64728 STRING:O64728 PaxDb:O64728
PRIDE:O64728 EnsemblPlants:AT2G02480.1 GeneID:814777
KEGG:ath:AT2G02480 TAIR:At2g02480 HOGENOM:HOG000244020
InParanoid:O64728 OMA:CHSKTLR PhylomeDB:O64728
ProtClustDB:CLSN2687935 ArrayExpress:O64728 Genevestigator:O64728
Uniprot:O64728
Length = 1218
Score = 186 (70.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 70/292 (23%), Positives = 133/292 (45%)
Query: 1 MRANFGKIHKSGKNKSPNFTQKFSTTQSSPEKSED---EVKRKMAPVLQSSQPWVEKYRP 57
+ N+G++ +++ +++ST+ S + E + + + ++ + + +KYRP
Sbjct: 400 LSTNYGELDLEAQSRLDG--RRWSTSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRP 457
Query: 58 KQVKDVAHQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTAL-------AIAHQLFGP 109
+++ Q VV+ L N ++ + P LF GP GTGKT+TA +A + P
Sbjct: 458 MFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKP 517
Query: 110 ELY----------KSRVL-ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
Y KS+ EL+ ++ +G + VR +K + + YK+
Sbjct: 518 CGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSM--------YKV 569
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
++DE + + + +E + F FI + + + SRC KF F L +
Sbjct: 570 FVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSD 629
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
+ R+ I ++E L++D AL ++ + G LR A T L+ + L G IT+
Sbjct: 630 IVVRLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQLS-LLGKRITT 680
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 180 (68.4 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 63/250 (25%), Positives = 117/250 (46%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIA---- 103
Q KYR + + QE V + L +E H LF GP GTGKT+ A A
Sbjct: 3 QALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 104 --HQLFG-P--ELYKSR---------VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
+Q+ G P Y + V+E++A+ + G++ +R +I+ + A +
Sbjct: 63 CPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIR-EIRDKSTYAPSLAR--- 118
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
YK+ I+DE ++ A NAL +T+E ++ F + +I + SR +F
Sbjct: 119 ------YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRF 172
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSI 268
FK + + + + +I +E ++ + EA+ ++ ++G +R A++ L A L G+ +
Sbjct: 173 EFKSIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNEL 232
Query: 269 TSKDLISVSG 278
T+ ++G
Sbjct: 233 TTAISEEITG 242
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 180 (68.4 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 68/250 (27%), Positives = 110/250 (44%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL- 106
Q KYRP+ D+ Q+ +VR L N + G GTGKTTTA IA +
Sbjct: 10 QVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMN 69
Query: 107 -FGPE------------------LYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGS 144
GP+ + + R V+E++A+ G+N +R I + V +
Sbjct: 70 CIGPDGNGGPTTEPCGKCEHCVAIMEGRHVDVMEMDAASRTGVNDIREIIDS---VRYRA 126
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
R YKI I+DE ++ A NAL +T+E +F F I ++ + S
Sbjct: 127 ASAR-------YKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLS 179
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RC +F + + E M + + I + EG + +AL+ + ++G R A + L A
Sbjct: 180 RCQRFDLRRIEPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQAIS-H 238
Query: 265 GSSITSKDLI 274
G+ TS + +
Sbjct: 239 GAGETSAEQV 248
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 175 (66.7 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 59/219 (26%), Positives = 106/219 (48%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTL---ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
KYRP+ + ++ Q+ +V+ L+ ++ E A +L GP GTGKTTTA A+ L
Sbjct: 9 KYRPRLLDEIVGQDFLVKCLSASIARDEVAGA--ILLSGPYGTGKTTTARAVTLSLLC-- 64
Query: 111 LYKSRVLELNASDDRGINVVRTK----IKTFAAVAVGSGQRR----GGYPCP---PYKII 159
L ++ L D I+++ ++ AA G R G P YK
Sbjct: 65 LNRTSALPCLKCDSC-ISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLSKYKSY 123
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
I+DE +++ A +AL + +E + +FF + +I + SRC +R LS V+
Sbjct: 124 IVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVI 183
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+ R+ + +E + + +A+ ++ + G LR A++ L+
Sbjct: 184 AERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLE 222
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 175 (66.7 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 59/219 (26%), Positives = 106/219 (48%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTL---ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
KYRP+ + ++ Q+ +V+ L+ ++ E A +L GP GTGKTTTA A+ L
Sbjct: 9 KYRPRLLDEIVGQDFLVKCLSASIARDEVAGA--ILLSGPYGTGKTTTARAVTLSLLC-- 64
Query: 111 LYKSRVLELNASDDRGINVVRTK----IKTFAAVAVGSGQRR----GGYPCP---PYKII 159
L ++ L D I+++ ++ AA G R G P YK
Sbjct: 65 LNRTSALPCLKCDSC-ISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLSKYKSY 123
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
I+DE +++ A +AL + +E + +FF + +I + SRC +R LS V+
Sbjct: 124 IVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVI 183
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+ R+ + +E + + +A+ ++ + G LR A++ L+
Sbjct: 184 AERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLE 222
>TAIR|locus:2172013 [details] [associations]
symbol:AT5G45720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
IPI:IPI00536419 RefSeq:NP_199384.2 UniGene:At.51078
UniGene:At.70630 ProteinModelPortal:F4KEM0 SMR:F4KEM0 PRIDE:F4KEM0
EnsemblPlants:AT5G45720.1 GeneID:834611 KEGG:ath:AT5G45720
OMA:ESGRSEI Uniprot:F4KEM0
Length = 966
Score = 134 (52.2 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 33/113 (29%), Positives = 63/113 (55%)
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE- 216
++I D+ D+M+ D N L + ++ + F +C+ + + + SRC KF F L +
Sbjct: 458 VLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDV 517
Query: 217 EVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
+++ S L I ++E +++D +AL ++S S G LR A L+ + L G+ I+
Sbjct: 518 DIIDSLQL-IASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLS-LLGTRIS 568
Score = 95 (38.5 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL 106
Q + +KY P+ +D+ Q VV+ L+N + + +F+GP GTGKT+ A A L
Sbjct: 343 QSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARAL 401
>WB|WBGene00004337 [details] [associations]
symbol:rfc-1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005663
"DNA replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006260 GO:GO:0000003 GO:GO:0006974 eggNOG:COG0470
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:Z75532 PIR:T20230
RefSeq:NP_001256606.1 ProteinModelPortal:Q18841 SMR:Q18841
IntAct:Q18841 MINT:MINT-228102 STRING:Q18841 PaxDb:Q18841
EnsemblMetazoa:C54G10.2a GeneID:179967 KEGG:cel:CELE_C54G10.2
UCSC:C54G10.2 CTD:179967 WormBase:C54G10.2a HOGENOM:HOG000017534
InParanoid:Q18841 OMA:DYAPMLR NextBio:907580 Uniprot:Q18841
Length = 839
Score = 170 (64.9 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 60/197 (30%), Positives = 90/197 (45%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
L G PG GKTT A QL G +L +E+NASD R + KI + +
Sbjct: 344 LLSGSPGVGKTTCAYMACQQL-GLQL-----VEMNASDVRSKKHLEAKIGELSG-SHQIE 396
Query: 146 QRRGGYPCPP------YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI- 198
Q G C P + I+I+DE D M+ + A + K ++ IC R
Sbjct: 397 QFFGAKKCAPQDNQKVHHILIMDEVDGMSGNEDRAGISELIQIIKESKIPIICICNDRQH 456
Query: 199 --IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
I LA+ C RF E + SR++ IC++E + + E L + +S D+R+ I
Sbjct: 457 PKIRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYN 516
Query: 257 LQGAARLFGSSITSKDL 273
LQ ++ G+ I KD+
Sbjct: 517 LQMRSKGVGAKINQKDM 533
Score = 52 (23.4 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 11 SGKNKSPNFT-QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ 66
S K P T + S++Q S + K P S WV+KY+PK++ ++ Q
Sbjct: 242 SVKKDPPKVTSESSSSSQVSTSSVVFQPKPSGPPPALS---WVDKYKPKRMGELVGQ 295
Score = 43 (20.2 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 19 FTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQE 67
FT + + +PEK ++ K+K P ++ P + K+ K+ ++
Sbjct: 192 FTP-ITVKKKTPEKRKETPKKKELPSVKKEFPKKQSIPVKKEKETPQKK 239
Score = 37 (18.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQ 59
TQ +K+ K++ PV+ + E+ P++
Sbjct: 20 TQEKQKKAATPAKKRTKPVVLTDDDEEEENAPQK 53
>POMBASE|SPBC902.02c [details] [associations]
symbol:ctf18 "RFC-like complex subunit Ctf18"
species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005657
"replication fork" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=IC] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0051455 "attachment of
spindle microtubules to kinetochore involved in homologous
chromosome segregation" evidence=IMP] [GO:0003689 "DNA clamp loader
activity" evidence=TAS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 PomBase:SPBC902.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0017111
eggNOG:COG0470 GO:GO:0005657 GO:GO:0051455 KO:K11269 EMBL:AB027926
PIR:T50383 RefSeq:NP_595200.1 ProteinModelPortal:Q9USQ1
STRING:Q9USQ1 EnsemblFungi:SPBC902.02c.1 GeneID:2541270
KEGG:spo:SPBC902.02c OrthoDB:EOG4HDX3F NextBio:20802382
GO:GO:0031390 GO:GO:0007062 Uniprot:Q9USQ1
Length = 960
Score = 167 (63.8 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 59/186 (31%), Positives = 89/186 (47%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA--VAV 142
M+ G G GKTT A IAHQ G YK VLE+NASDDR + V K+ + + A+
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQA-G---YK--VLEINASDDRTAHTVHEKVSSAISNHSAL 472
Query: 143 GS-------GQRRGGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTR-FFFICN 193
S + GG P ++ L E+D TE +Q + + + K+ R ICN
Sbjct: 473 SSQPTCVIVDEIDGGDPAFVRALLSLLESDEKATEYSQAGNSKKKKKFKKLCRPIICICN 532
Query: 194 YI-SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252
+ + + PL F+P + + R+ IC E + +D+ +L+ L+ I D+R
Sbjct: 533 DLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAVDSRSLTLLTDIYNSDIRS 592
Query: 253 AITYLQ 258
I LQ
Sbjct: 593 CINSLQ 598
Score = 57 (25.1 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVR 71
QS + WV+ YRP+ +D+ E V R
Sbjct: 348 QSQKLWVDTYRPQLFRDLLGDERVHR 373
>UNIPROTKB|P06710 [details] [associations]
symbol:dnaX species:83333 "Escherichia coli K-12"
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IDA] [GO:0043846 "DNA
polymerase III, clamp loader complex" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0030337 "DNA polymerase
processivity factor activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] UniProt:P06710 InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR021029 InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170
PRINTS:PR00300 SMART:SM00382 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 EMBL:U82664 EMBL:X04487
EMBL:M38777 GO:GO:0003887 eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 EMBL:X04275 PIR:A25549 RefSeq:NP_415003.1
RefSeq:YP_488761.1 PDB:1JR3 PDB:1NJF PDB:1NJG PDB:1XXH PDB:1XXI
PDB:2AYA PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1NJF PDBsum:1NJG PDBsum:1XXH PDBsum:1XXI PDBsum:2AYA
PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH PDBsum:3GLI
ProteinModelPortal:P06710 SMR:P06710 DIP:DIP-9464N IntAct:P06710
MINT:MINT-1222776 PRIDE:P06710 EnsemblBacteria:EBESCT00000003686
EnsemblBacteria:EBESCT00000015762 GeneID:12930852 GeneID:945105
KEGG:ecj:Y75_p0457 KEGG:eco:b0470 PATRIC:32116097 EchoBASE:EB0241
EcoGene:EG10245 HOGENOM:HOG000083934 OMA:VQLYYQT
ProtClustDB:PRK07994 BioCyc:EcoCyc:EG10245-MONOMER
BioCyc:EcoCyc:MONOMER0-2383 BioCyc:ECOL316407:JW0459-MONOMER
BindingDB:P06710 EvolutionaryTrace:P06710 Genevestigator:P06710
GO:GO:0043846 GO:GO:0030337 InterPro:IPR022001 Pfam:PF12168
Length = 643
Score = 173 (66.0 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 66/243 (27%), Positives = 107/243 (44%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S Q K+RP+ DV QE V+ L N L H LF G G GKT+ A +A
Sbjct: 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61
Query: 106 L---FGPELYKSRVLELNASDDRG--INVV------RTKIKTFAAVA--VGSGQRRGGYP 152
L G V + ++G ++++ RTK++ + V RG +
Sbjct: 62 LNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF- 120
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
K+ ++DE ++ + NAL +T+E + +F ++ + SRC +F K
Sbjct: 121 ----KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
L E + ++ HI NEE + + AL L+ ++G LR A++ L A G S
Sbjct: 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS-LTDQAIASGDGQVSTQ 235
Query: 273 LIS 275
+S
Sbjct: 236 AVS 238
>UNIPROTKB|O83970 [details] [associations]
symbol:TP_1005 "DNA polymerase III, subunits gamma and tau
(DnaH)" species:243276 "Treponema pallidum subsp. pallidum str.
Nichols" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 EMBL:AE000520 GenomeReviews:AE000520_GR
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HSSP:P06710 PIR:G71254 RefSeq:NP_219442.1 ProteinModelPortal:O83970
IntAct:O83970 GeneID:2610796 KEGG:tpa:TP1005 PATRIC:20532135
OMA:ANAYIFS ProtClustDB:PRK06647 Uniprot:O83970
Length = 572
Score = 170 (64.9 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 63/240 (26%), Positives = 103/240 (42%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELY 112
+YRP++ + V Q+ VV L +LE P LF GP G GKT+ A +A L +
Sbjct: 9 RYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAKALNCVQRE 68
Query: 113 KSRVL-ELNASDD--RGINVVRTKIKTFAAVAVGS-GQRRGGYPCPP----YKIIILDEA 164
S E + + G N+ +I + VG Q + PP YK+ I+DE
Sbjct: 69 ASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPHGTRYKVFIIDEV 128
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
++ A NAL +T+E F F + RI + SRC +F F+ + + + +
Sbjct: 129 HMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVDTQTLVCALA 188
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGGS 284
+ + ++ LS ++ S G +R A T +T +++ G T S
Sbjct: 189 QAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFDQTVVSCAGPVTLENIQKKLGLMTDDS 248
>TIGR_CMR|CPS_2757 [details] [associations]
symbol:CPS_2757 "ATPase, AAA family" species:167879
"Colwellia psychrerythraea 34H" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0006310 GO:GO:0009378 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 RefSeq:YP_269469.1 ProteinModelPortal:Q480Q0
SMR:Q480Q0 STRING:Q480Q0 GeneID:3522496 KEGG:cps:CPS_2757
PATRIC:21468551 BioCyc:CPSY167879:GI48-2818-MONOMER Uniprot:Q480Q0
Length = 511
Score = 169 (64.5 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 67/274 (24%), Positives = 115/274 (41%)
Query: 9 HKSGKNKSPNFTQKFSTTQSSPE-KSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQE 67
H G ++ F T + E S D + S P K RPK + D Q+
Sbjct: 17 HNQGNSEGQQ-DSLFDLTPDNDEVTSTDNTSTQGNAAASSFMPLAAKMRPKTLADYVGQQ 75
Query: 68 EVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124
++ L ++E +C ++F+GPPG+GKTT A IA Q E+ RV + +
Sbjct: 76 HILGGDSPLAQSIEQGHCHSLIFWGPPGSGKTTLAEIIA-QHANAEI--ERVSAVTS--- 129
Query: 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184
GI +R+ I+ A G G + ++ +DE + Q+A +E +
Sbjct: 130 -GIKEIRSAIEKAKLRAQGEGANKRR------TVLFVDEVHRFNKSQQDAFLPHIEDGTI 182
Query: 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS---RVLHICNEE---GLNLDAEA 238
+ N + + L SR + K L+ + ++ R + +C E + L +A
Sbjct: 183 IFIGATTENPAFELNQALLSRARLYTLKKLTRDDLAQVLQRAISLCEAEQQLSIKLSVDA 242
Query: 239 LSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
+L + S GD RR + L+ SS+T+ +
Sbjct: 243 KQSLLNRSDGDARRLLNLLENC---LDSSVTTHE 273
>GENEDB_PFALCIPARUM|PFB0895c [details] [associations]
symbol:PFB0895c "replication factor C subunit 1,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 172 (65.6 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 77/275 (28%), Positives = 118/275 (42%)
Query: 13 KNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKD-VAHQEEVVR 71
+NK N+ + + EK + + +L +Q WVEKYRPK + + V + + V++
Sbjct: 319 ENKDKNYNYEKKDKNYNYEKKDTHNTQN--EIL--NQLWVEKYRPKNLNELVGNNQNVIK 374
Query: 72 VLTNTL-----------------------ETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
L N L E N L GP G GKTTTA I + G
Sbjct: 375 -LQNWLASWEDVCIKGIKKPAQKTFRGIFENVNARCALLSGPAGIGKTTTA-KIVSEASG 432
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAA--VAVGS-GQRRGGYPCPPYKIIILDEAD 165
Y V+E NASD+R V KI A ++ S R+ C II+DE D
Sbjct: 433 ---YN--VIEFNASDERNKAAVE-KISEMATGGYSIMSLNNRKLTKTC-----IIMDEVD 481
Query: 166 SMTEDAQNALRRTMETYSKVT-RFFFICN-YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
M+ + ++ K ICN + + LA++C +F + + R+
Sbjct: 482 GMSSGDKGGSTAILKLIEKTKCPIICICNDRQNNKMRTLANKCYDLKFSMPQKNSVVKRL 541
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
L IC +EG+ ++ AL L + GD+R+ + LQ
Sbjct: 542 LEICKKEGIMMEPNALELLWESTCGDIRQMLNTLQ 576
>UNIPROTKB|O96271 [details] [associations]
symbol:PFB0895c "Replication factor C subunit 1, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 172 (65.6 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 77/275 (28%), Positives = 118/275 (42%)
Query: 13 KNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKD-VAHQEEVVR 71
+NK N+ + + EK + + +L +Q WVEKYRPK + + V + + V++
Sbjct: 319 ENKDKNYNYEKKDKNYNYEKKDTHNTQN--EIL--NQLWVEKYRPKNLNELVGNNQNVIK 374
Query: 72 VLTNTL-----------------------ETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
L N L E N L GP G GKTTTA I + G
Sbjct: 375 -LQNWLASWEDVCIKGIKKPAQKTFRGIFENVNARCALLSGPAGIGKTTTA-KIVSEASG 432
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAA--VAVGS-GQRRGGYPCPPYKIIILDEAD 165
Y V+E NASD+R V KI A ++ S R+ C II+DE D
Sbjct: 433 ---YN--VIEFNASDERNKAAVE-KISEMATGGYSIMSLNNRKLTKTC-----IIMDEVD 481
Query: 166 SMTEDAQNALRRTMETYSKVT-RFFFICN-YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
M+ + ++ K ICN + + LA++C +F + + R+
Sbjct: 482 GMSSGDKGGSTAILKLIEKTKCPIICICNDRQNNKMRTLANKCYDLKFSMPQKNSVVKRL 541
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
L IC +EG+ ++ AL L + GD+R+ + LQ
Sbjct: 542 LEICKKEGIMMEPNALELLWESTCGDIRQMLNTLQ 576
>TAIR|locus:2032432 [details] [associations]
symbol:AT1G24290 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000449 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR009060 Pfam:PF00004 Pfam:PF00627 SMART:SM00382
EMBL:CP002684 GO:GO:0005524 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0017111 SUPFAM:SSF46934 EMBL:AC002396
UniGene:At.41453 UniGene:At.63976 HOGENOM:HOG000017623 KO:K07478
InterPro:IPR021886 Pfam:PF12002 IPI:IPI00523189 PIR:T00660
RefSeq:NP_173839.1 HSSP:Q56313 ProteinModelPortal:O48696 SMR:O48696
STRING:O48696 PRIDE:O48696 EnsemblPlants:AT1G24290.1 GeneID:839045
KEGG:ath:AT1G24290 TAIR:At1g24290 InParanoid:O48696 OMA:FEVIAPL
PhylomeDB:O48696 ProtClustDB:CLSN2682390 Genevestigator:O48696
Uniprot:O48696
Length = 525
Score = 168 (64.2 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 64/256 (25%), Positives = 120/256 (46%)
Query: 33 SEDEVKR-KMAPVL-QSSQPWVEKYRPKQVKDVAHQEEVVR---VLTNTLETANCPHMLF 87
++D KR K++ + QP E+ RP+ + DV Q+ ++ +L + +E+ P ++F
Sbjct: 83 ADDSNKRHKLSSSSHRQHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVF 142
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
+GPPGTGKT+ A ++ + P LY R + L+A G+ VR +++ + + G++
Sbjct: 143 WGPPGTGKTSIAKSLINSSKDPSLY--RFVSLSAVTS-GVKDVRDAVESAKRLNL-EGRK 198
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
R ++ +DE + Q+ +E S + N +I PL SRC
Sbjct: 199 R--------TVLFMDEVHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITPLLSRCR 250
Query: 208 KFRFKPLSE---EVMSSRVLHICNEEGL----NLDAEALSTLSSISQGDLRRAITYLQGA 260
PL E + R + +E GL +D + L++ GD R A+ L+ +
Sbjct: 251 VLTLNPLKPNHVETLLRRAVDD-SERGLPNSVEVDDSVIEFLANNCDGDARVALNALEIS 309
Query: 261 ARLFGSSITSKDLISV 276
A + + + ++S+
Sbjct: 310 ATMATTRAGTDAVVSI 325
>DICTYBASE|DDB_G0285961 [details] [associations]
symbol:rfc1 "replication factor C subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 dictyBase:DDB_G0285961
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0006298 EMBL:AAFI02000082
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 HSSP:P38630
GO:GO:0003689 eggNOG:COG0272 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 RefSeq:XP_638011.1 ProteinModelPortal:Q54MH9
STRING:Q54MH9 EnsemblProtists:DDB0232230 GeneID:8625362
KEGG:ddi:DDB_G0285961 KO:K10754 OMA:IIELSTW Uniprot:Q54MH9
Length = 1401
Score = 174 (66.3 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 67/234 (28%), Positives = 105/234 (44%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETAN--CPH-------MLFYGPPGTGKTTTALA 101
WVEKYRPK ++D+ + + L+ N P +L GPPG GKT+ AL
Sbjct: 851 WVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPPGIGKTSAALL 910
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPY 156
I Q G E +ELNASD R + ++ + + G+ + G
Sbjct: 911 ICKQK-GFE-----AIELNASDARSKSEIKRLLSGVSDNQNITKFFGTTNQDTGKDVQAN 964
Query: 157 K----IIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC---NYISRIIEPLASRCAKF 209
K IILDE D + ++ + K ++ FIC +Y S + L + C
Sbjct: 965 KKIKTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICLCNDYYSSKVTSLRNHCMDL 1024
Query: 210 RF-KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
+ KP +V SSR+L I EG+ + + + + + S D+R++I LQ +R
Sbjct: 1025 KLRKPTLNQV-SSRLLAIAKHEGMKVSSYMIEKVYTSSHSDIRQSINTLQMMSR 1077
Score = 42 (19.8 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 9 HKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQP 50
+KS K K P+ + T + S +E K+K + +P
Sbjct: 101 NKSPKKKEPS--KSIDLTSDEDKSSSEEDKKKPSSSSSKKKP 140
>ASPGD|ASPL0000029025 [details] [associations]
symbol:AN5617 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AACD01000098 EMBL:BN001305 GO:GO:0017111
eggNOG:COG2256 HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF
InterPro:IPR021886 Pfam:PF12002 OrthoDB:EOG4Z924S
RefSeq:XP_663221.1 ProteinModelPortal:Q5B1G3 STRING:Q5B1G3
EnsemblFungi:CADANIAT00003453 GeneID:2871909 KEGG:ani:AN5617.2
Uniprot:Q5B1G3
Length = 528
Score = 167 (63.8 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 72/252 (28%), Positives = 105/252 (41%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV--VRVLTNTLETANCPHMLFY 88
E SE K+ Q + P E+ RP+ + +V QE V VL +E P M+ +
Sbjct: 97 EASEPVPKKPKVNAFQRAAPLAERMRPRTLDEVCGQELVGPTGVLRGLIEEDRVPSMILW 156
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148
G PGTGKTT A IA + G SR +E+N S G+ + KI A +G R+
Sbjct: 157 GGPGTGKTTIARVIA-SMVG-----SRFVEIN-STSTGVAECK-KIFADAKSELGLTGRK 208
Query: 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208
II DE ++ Q+ +E+ N ++ L SRC
Sbjct: 209 --------TIIFCDEIHRFSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRT 260
Query: 209 FRFKPLSEEVMSSRVLHICNEEGLN------LDAEALSTLSSISQGDLRRAITYLQGAAR 262
F L++E + S + EG N +D E L L+ + GD R ++ L+
Sbjct: 261 FTLSKLTDEDIRSILNRALKTEGPNYSPSALVDDELLDYLAKFADGDARTSLNLLELGMN 320
Query: 263 LFGSSITSKDLI 274
L SKD I
Sbjct: 321 LSKRPGISKDEI 332
>TIGR_CMR|SO_2013 [details] [associations]
symbol:SO_2013 "DNA polymerase III, gamma and tau subunits"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_717619.1
ProteinModelPortal:Q8EFG0 SMR:Q8EFG0 GeneID:1169765
KEGG:son:SO_2013 PATRIC:23523647 OMA:PKSGLEM ProtClustDB:PRK14949
Uniprot:Q8EFG0
Length = 1002
Score = 170 (64.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 61/246 (24%), Positives = 107/246 (43%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S Q K+RP + + Q V+ LTN L H LF G G GKT+ A A
Sbjct: 2 SYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKG 61
Query: 106 L---FGPELYKSRVLE--LNASDDRGINVV------RTKIKTFAAVAVGSGQR--RGGYP 152
L G V + + R ++++ RTK+ + R RG +
Sbjct: 62 LNCETGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF- 120
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
K+ ++DE ++ + NAL +T+E + +F ++ + SRC +F K
Sbjct: 121 ----KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLK 176
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
L+++ + +++ HI +E L + EAL L+ + G +R A++ A G ++
Sbjct: 177 SLTQQEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQ 236
Query: 273 LISVSG 278
+ S+ G
Sbjct: 237 VQSMLG 242
>UNIPROTKB|Q9KT51 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 OMA:VQLYYQT
ProtClustDB:PRK07994 InterPro:IPR022001 Pfam:PF12168 HSSP:P06710
PIR:H82246 RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 167 (63.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 56/231 (24%), Positives = 101/231 (43%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL---FGP 109
K+RP + +V Q V+ L N L H LF G G GKTT A L G
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGI 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-GSGQRRGGYPCPP----YKIIILDEA 164
D+G V +I + V + + P +K+ ++DE
Sbjct: 69 TATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEV 128
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
++ + NAL +T+E + +F ++ + SRC +F KP+S E + ++
Sbjct: 129 HMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQQLD 188
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ + E ++ D++AL+ L+ + G +R A++ A L G+ + D+++
Sbjct: 189 KVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIAL-GNGVVKSDIVA 238
>TIGR_CMR|VC_1054 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:VQLYYQT ProtClustDB:PRK07994
InterPro:IPR022001 Pfam:PF12168 HSSP:P06710 PIR:H82246
RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 167 (63.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 56/231 (24%), Positives = 101/231 (43%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL---FGP 109
K+RP + +V Q V+ L N L H LF G G GKTT A L G
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGI 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-GSGQRRGGYPCPP----YKIIILDEA 164
D+G V +I + V + + P +K+ ++DE
Sbjct: 69 TATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEV 128
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
++ + NAL +T+E + +F ++ + SRC +F KP+S E + ++
Sbjct: 129 HMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQQLD 188
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ + E ++ D++AL+ L+ + G +R A++ A L G+ + D+++
Sbjct: 189 KVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIAL-GNGVVKSDIVA 238
>TIGR_CMR|SO_2308 [details] [associations]
symbol:SO_2308 "ATPase, AAA family" species:211586
"Shewanella oneidensis MR-1" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 RefSeq:NP_717903.2
ProteinModelPortal:Q8EER1 GeneID:1170033 KEGG:son:SO_2308
PATRIC:23524239 Uniprot:Q8EER1
Length = 443
Score = 164 (62.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 61/247 (24%), Positives = 108/247 (43%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+P + RP+ + + Q ++ + L LE M+ +GPPGTGKTT A IAH
Sbjct: 13 RPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTTLAELIAH- 71
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
Y + +E ++ G+ +R I+ A+A GQR ++ +DE
Sbjct: 72 ------YSNAHVERISAVTSGVKDIRGAIEQAQAIAQSRGQRT---------LLFVDEVH 116
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+ Q+A +E + + N I L SR + K LS++ + +
Sbjct: 117 RFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQ 176
Query: 226 IC--NEEGL-----NLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDLISV 276
E GL N+ + L+ L+ + GD R+A+ L+ + + G + T++ L+ V
Sbjct: 177 ALADTERGLGQRALNMPTDVLNKLAQLCDGDARKALNLLELMSDMVADGGTFTTEMLVQV 236
Query: 277 SGYPTGG 283
+G+ G
Sbjct: 237 AGHQVAG 243
>UNIPROTKB|P63975 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
PIR:B70796 RefSeq:NP_218238.1 RefSeq:NP_338379.1
RefSeq:YP_006517213.1 ProteinModelPortal:P63975 SMR:P63975
PRIDE:P63975 EnsemblBacteria:EBMYCT00000002188
EnsemblBacteria:EBMYCT00000072154 GeneID:13317335 GeneID:885361
GeneID:922673 KEGG:mtc:MT3824 KEGG:mtu:Rv3721c KEGG:mtv:RVBD_3721c
PATRIC:18130168 TubercuList:Rv3721c OMA:IARVEPH
ProtClustDB:PRK14952 Uniprot:P63975
Length = 578
Score = 162 (62.1 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 58/215 (26%), Positives = 89/215 (41%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLF---GP 109
KYRP +V QE V L+ L+ H LF GP G GKT++A +A L GP
Sbjct: 6 KYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGP 65
Query: 110 ELYKSRVLE----LNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP---YKIIILD 162
V E L + I+VV + V R + P Y++ I+D
Sbjct: 66 TANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRVFIVD 125
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EA +T NAL + +E + F F +++ + SR + F+ L M +
Sbjct: 126 EAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRAL 185
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
+ IC +EG+ +D + G R ++ L
Sbjct: 186 LARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVL 220
>FB|FBgn0004913 [details] [associations]
symbol:Gnf1 "Germ line transcription factor 1" species:7227
"Drosophila melanogaster" [GO:0003677 "DNA binding"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0006260 "DNA replication" evidence=IEA;NAS] [GO:0005663 "DNA
replication factor C complex" evidence=IEA;NAS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0022008
GO:GO:0006355 GO:GO:0003677 GO:GO:0006260 GO:GO:0006351
GO:GO:0046331 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:L17340 EMBL:U97685 EMBL:AY122077
EMBL:BT003618 RefSeq:NP_001014605.1 RefSeq:NP_524229.1
UniGene:Dm.2491 ProteinModelPortal:P35600 SMR:P35600 DIP:DIP-18735N
IntAct:P35600 MINT:MINT-961959 STRING:P35600 PaxDb:P35600
EnsemblMetazoa:FBtr0078837 GeneID:40607 KEGG:dme:Dmel_CG1119
CTD:100035172 FlyBase:FBgn0004913 eggNOG:COG5275 InParanoid:P35600
OrthoDB:EOG4S1RP9 GenomeRNAi:40607 NextBio:819627 GermOnline:CG1119
Uniprot:P35600
Length = 986
Score = 157 (60.3 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 51/199 (25%), Positives = 92/199 (46%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
L GPPG GKTTTA + +L G + +E NASD R +++ ++ T + SG
Sbjct: 484 LLSGPPGIGKTTTATLVVKEL-GFD-----AVEFNASDTRSKRLLKDEVSTLLSNKSLSG 537
Query: 146 QRRG-GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI---IEP 201
G G ++I+DE D M + + + K + IC R I
Sbjct: 538 YFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRS 597
Query: 202 LASRCAKFRF-KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL--- 257
L + C RF +P E++ +++ IC +E + + + + + + D+R++I ++
Sbjct: 598 LVNYCYDLRFQRPRLEQI-KGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALL 656
Query: 258 ---QGAARLFGSSITSKDL 273
+ A++ G + +KDL
Sbjct: 657 SAKEDASQKSGQQVATKDL 675
Score = 51 (23.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQS-SQPWVEKYRPKQVKDVAHQ 66
K N P T K SS ++ + L WV+K++P +K++ Q
Sbjct: 381 KDKLNDVPAVTLKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQ 438
Score = 38 (18.4 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA 64
S +++PEK + R ++ E +PK K A
Sbjct: 137 SIKEAAPEKKVHSITRSSPSPKRAKNSSPEPPKPKSTKSKA 177
>TIGR_CMR|APH_1348 [details] [associations]
symbol:APH_1348 "DNA polymerase III, subunits gamma and
tau" species:212042 "Anaplasma phagocytophilum HZ" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:TCARIVS ProtClustDB:PRK14964
RefSeq:YP_505851.1 ProteinModelPortal:Q2GIF0 STRING:Q2GIF0
GeneID:3930792 KEGG:aph:APH_1348 PATRIC:20951496
BioCyc:APHA212042:GHPM-1348-MONOMER Uniprot:Q2GIF0
Length = 456
Score = 158 (60.7 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 56/244 (22%), Positives = 112/244 (45%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLF---GP 109
KYRP D+ Q+ +VR+L N+ N +L G G GKTT A ++ L GP
Sbjct: 6 KYRPSNFDDLVGQDVLVRILRNSFSVGNLNTPLLMVGASGVGKTTCARIVSLCLNCENGP 65
Query: 110 ------------ELYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
+ S V+E++A+ + ++ +R +++ + V S
Sbjct: 66 TSSPCGTCATCTSIKNSHNPDVVEMDAASNTSVDDIRVILESSNYLPVSSR--------- 116
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
+K+ I+DE ++ A NAL +T+E+ ++ +F + ++ +ASRC + L
Sbjct: 117 -FKVYIIDEVHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRCLRLDLGKL 175
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
+ + ++ I +E + D +L ++ S G +R ++ L+ A + I+ +++
Sbjct: 176 PIKQLYDHLVKISAKENIAHDESSLMLIAENSSGSVRNSLFLLEQALIYSNNKISLQEVR 235
Query: 275 SVSG 278
+ G
Sbjct: 236 ELLG 239
>TIGR_CMR|GSU_2067 [details] [associations]
symbol:GSU_2067 "ATPase, AAA family" species:243231
"Geobacter sulfurreducens PCA" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:NP_953116.1
ProteinModelPortal:Q74BH4 GeneID:2686000 KEGG:gsu:GSU2067
PATRIC:22026995 BioCyc:GSUL243231:GH27-1993-MONOMER Uniprot:Q74BH4
Length = 440
Score = 153 (58.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 63/232 (27%), Positives = 105/232 (45%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTT 98
A L+++ P E+ RP+ + + QE ++ ++L +E+ ++F+GPPG+GKTT
Sbjct: 10 AEALRNA-PLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTL 68
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
A IA+ ++ S +L GI +R +K A + RG I
Sbjct: 69 ARVIANATKSHFIFFSAILS-------GIKEIREIVKE----AEEEKKYRGRNT-----I 112
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE- 217
+ +DE + Q+A +E + N ++ PL SRC PLS+E
Sbjct: 113 LFVDEIHRFNKSQQDAFLPYVERGTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQEN 172
Query: 218 ---VMSSRVLHI---CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
++ S + GL D +AL+ ++ S GD R A+ L+ AARL
Sbjct: 173 VEQILRSALADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETAARL 224
>UNIPROTKB|Q47XQ9 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 154 (59.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 54/218 (24%), Positives = 94/218 (43%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S Q K+RPK + + QE VV VL N L H LF G G GKTT A A
Sbjct: 2 SYQVLARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKS 61
Query: 106 L---FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RGGYPCPP----YK 157
L G + D+G V +I + V + P +K
Sbjct: 62 LNCELGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRFK 121
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
+ ++DE ++ + NAL +T+E + +F ++ + SRC +F K L+ +
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVK 181
Query: 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255
+ ++ I + E ++ + L+ L+ ++G +R +++
Sbjct: 182 QIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLS 219
>TIGR_CMR|CPS_3744 [details] [associations]
symbol:CPS_3744 "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 154 (59.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 54/218 (24%), Positives = 94/218 (43%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S Q K+RPK + + QE VV VL N L H LF G G GKTT A A
Sbjct: 2 SYQVLARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKS 61
Query: 106 L---FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RGGYPCPP----YK 157
L G + D+G V +I + V + P +K
Sbjct: 62 LNCELGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRFK 121
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
+ ++DE ++ + NAL +T+E + +F ++ + SRC +F K L+ +
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVK 181
Query: 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255
+ ++ I + E ++ + L+ L+ ++G +R +++
Sbjct: 182 QIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLS 219
>TIGR_CMR|CJE_1293 [details] [associations]
symbol:CJE_1293 "DNA polymerase III, gamma/tau subunits"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR012763
SMART:SM00382 GO:GO:0005524 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 TIGRFAMs:TIGR02397
RefSeq:YP_179281.1 ProteinModelPortal:Q5HTV4 STRING:Q5HTV4
GeneID:3231800 KEGG:cjr:CJE1293 PATRIC:20044382 OMA:EMMLFLK
ProtClustDB:PRK08451 BioCyc:CJEJ195099:GJC0-1319-MONOMER
Uniprot:Q5HTV4
Length = 509
Score = 151 (58.2 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 58/235 (24%), Positives = 100/235 (42%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLF---GP 109
KYRPK ++ Q+ V L L H LF G G+GKT++A + L GP
Sbjct: 8 KYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGP 67
Query: 110 ELYKSRVLE--LNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGY-PCPP-YKIIILDEA 164
+ L A + + I+++ + + + + + Y P +KI I+DE
Sbjct: 68 SDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTPSMARFKIFIIDEV 127
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
+T A NAL +T+E +F ++ + SR FRFK + + + + +
Sbjct: 128 HMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIPQSEILNHLK 187
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279
I +E + + EAL ++ G LR +T L A + I+ + G+
Sbjct: 188 EILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQNEISISKTTDMLGF 242
>TIGR_CMR|CBU_0659 [details] [associations]
symbol:CBU_0659 "DNA polymerase III, gamma and tau
subunits" species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_819689.1
ProteinModelPortal:Q83DN8 SMR:Q83DN8 GeneID:1208544
KEGG:cbu:CBU_0659 PATRIC:17929995 OMA:CETKLLA ProtClustDB:PRK14958
BioCyc:CBUR227377:GJ7S-653-MONOMER Uniprot:Q83DN8
Length = 509
Score = 150 (57.9 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 56/239 (23%), Positives = 99/239 (41%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLF 107
Q K+RP+ ++V Q VVR L+N L+ H LF G G GKTT + +A L
Sbjct: 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63
Query: 108 ---GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-GSGQRRGGYPCPP----YKII 159
G E D G ++ + V + + P P +K+
Sbjct: 64 CEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVY 123
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
++DE ++ + NAL +T+E +F ++ + SRC +F L +
Sbjct: 124 LIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQI 183
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
++ H+ EE + + AL L+ + G +R A++ L + + D+ ++ G
Sbjct: 184 AAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLG 242
>MGI|MGI:97891 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 MGI:MGI:97891 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0006260 GO:GO:0006351
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 CTD:5981
HOVERGEN:HBG004167 OrthoDB:EOG4D26P3 ChiTaRS:RFC1 EMBL:U01222
EMBL:X72711 EMBL:U36441 EMBL:U07157 EMBL:U15037 IPI:IPI00378168
IPI:IPI00896013 PIR:A49393 RefSeq:NP_035388.2 UniGene:Mm.148877
ProteinModelPortal:P35601 SMR:P35601 STRING:P35601
PhosphoSite:P35601 PaxDb:P35601 PRIDE:P35601 GeneID:19687
KEGG:mmu:19687 UCSC:uc008xni.2 UCSC:uc008xnj.2 InParanoid:P35601
NextBio:297020 CleanEx:MM_RFC1 Genevestigator:P35601
GermOnline:ENSMUSG00000029191 Uniprot:P35601
Length = 1131
Score = 138 (53.6 bits), Expect = 8.5e-08, Sum P(3) = 8.5e-08
Identities = 52/210 (24%), Positives = 94/210 (44%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+ + ++ H + ++ + + ++ L GPPG GKTTTA + +L G
Sbjct: 598 WLRNWHKSSPEEKKHAAKFGKLASKD-DGSSFKAALLSGPPGVGKTTTASLVCQEL-G-- 653
Query: 111 LYKSRVLELNASDDRGINVVRTKI-KTFAAVAVGSGQRRGGYPCPPYK-IIILDEADSMT 168
Y +ELNASD R N ++ + ++ ++ G P + +I+DE D M
Sbjct: 654 -YS--YVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMA 710
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRI---IEPLASRCAKFRF-KPLSEEVMSSRVL 224
+ + + K T+ IC R I L C RF +P E++ S+ +L
Sbjct: 711 GNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSA-ML 769
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAI 254
I +EGL + A++ + + D+R+ +
Sbjct: 770 SIAFKEGLKIPPPAMNEIILGANQDVRQVL 799
Score = 51 (23.0 bits), Expect = 8.5e-08, Sum P(3) = 8.5e-08
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 51 WVEKYRPKQVKDVAHQE 67
WV+KY+P +K++ Q+
Sbjct: 570 WVDKYKPASLKNIIGQQ 586
Score = 49 (22.3 bits), Expect = 8.5e-08, Sum P(3) = 8.5e-08
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 8 IHKSGKNKSPNFTQKFSTTQS--SPEK 32
+ K+ K KSPN + FST + SP K
Sbjct: 258 LSKAEKQKSPNKAELFSTARKTYSPAK 284
Score = 45 (20.9 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 6 GKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQ 49
GK K ++ S + +P+K+ D+ KRK++P + S+
Sbjct: 481 GKRSKYEMAAEAEMKKEKSKLERTPQKN-DQGKRKISPAKKESE 523
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 7 KIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSS 48
K KS ++P + + SP K E E K+ +L++S
Sbjct: 495 KKEKSKLERTPQKNDQ-GKRKISPAKKESESKKCKLTLLKNS 535
Score = 37 (18.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 11 SGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVV 70
+ K+K + S+ +K+E+ VK K P+ P K P V D E V
Sbjct: 121 ASKSKENGVSTNSYLGTSNVKKNEENVKTKNKPL----SPI--KLTPTSVLDYFGTESVQ 174
Query: 71 R 71
R
Sbjct: 175 R 175
>TIGR_CMR|CHY_0329 [details] [associations]
symbol:CHY_0329 "ATP-dependent protease LonB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004252 "serine-type endopeptidase activity" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0030436 "asexual sporulation"
evidence=ISS] InterPro:IPR002078 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008268 InterPro:IPR008269
InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362 PROSITE:PS01046
PROSITE:PS50045 SMART:SM00382 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006508
GO:GO:0006351 GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 eggNOG:COG1067 PANTHER:PTHR10046
RefSeq:YP_359192.1 ProteinModelPortal:Q3AF92 STRING:Q3AF92
GeneID:3728068 KEGG:chy:CHY_0329 PATRIC:21273827
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
BioCyc:CHYD246194:GJCN-330-MONOMER InterPro:IPR014251
TIGRFAMs:TIGR02902 Uniprot:Q3AF92
Length = 547
Score = 116 (45.9 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 32 KSEDEV-KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
+SE E+ K + ++P EK RP+ ++ QEE + L L N H++ YGP
Sbjct: 40 ESEKELAKLNHLRRISLTEPLAEKTRPENFSEIIGQEEGIEALKAALCGPNPQHVILYGP 99
Query: 91 PGTGKTTTA-LAIAHQLFGPEL-YK--SRVLELNAS----DDRGI 127
PG GKT A L + + P +K + +E++A+ D+RGI
Sbjct: 100 PGVGKTAAARLVLKEAIKSPASPFKEGAAFVEVDATCTRFDERGI 144
Score = 78 (32.5 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
L SRC + FKPL +E + + + G++L AL T+ + R A+ +Q AA
Sbjct: 256 LRSRCVEIFFKPLGDEEIREIAQNAAKKIGISLGKHALQTIVKYANSG-REAVNIVQLAA 314
Query: 262 RL-FGSS---ITSKDLISVS 277
L G I ++D++ V+
Sbjct: 315 GLALGEGRKRILARDVLFVA 334
>SGD|S000004683 [details] [associations]
symbol:CTF18 "Subunit of a Ctf18 RFC-like complex"
species:4932 "Saccharomyces cerevisiae" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IGI;IMP] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0043596 "nuclear replication
fork" evidence=IDA] [GO:0035753 "maintenance of DNA trinucleotide
repeats" evidence=IMP] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
SGD:S000004683 GO:GO:0005739 GO:GO:0005524 GO:GO:0003677
EMBL:BK006946 GO:GO:0006270 GO:GO:0043596 GO:GO:0000724 EMBL:Z49259
GO:GO:0017111 eggNOG:COG0470 GO:GO:0007064 OMA:YNEGFSN KO:K11269
GeneTree:ENSGT00550000075029 OrthoDB:EOG4HDX3F GO:GO:0031390
EMBL:L24514 PIR:S50340 RefSeq:NP_013795.1 ProteinModelPortal:P49956
SMR:P49956 DIP:DIP-5868N IntAct:P49956 MINT:MINT-626774
STRING:P49956 PaxDb:P49956 EnsemblFungi:YMR078C GeneID:855102
KEGG:sce:YMR078C CYGD:YMR078c HOGENOM:HOG000066044 NextBio:978425
Genevestigator:P49956 GermOnline:YMR078C GO:GO:0035753
Uniprot:P49956
Length = 741
Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 77/268 (28%), Positives = 125/268 (46%)
Query: 35 DEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTG 94
++ R+M L+ P V K +Q+ + ++EV + + L+ +L +GPPG G
Sbjct: 132 EKTNRRMLGWLRQWTPAVFK---EQLPKLPTEKEVSDMELDPLKRPPKKILLLHGPPGIG 188
Query: 95 KTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI------KTFAA--VAVGSGQ 146
KT+ A IA Q G V E+NASD+R +V+ KI TF V + + +
Sbjct: 189 KTSVAHVIAKQS-G-----FSVSEINASDERAGPMVKEKIYNLLFNHTFDTNPVCLVADE 242
Query: 147 RRGGYPCPPYKIIILDEADSMTED--AQNAL---------RRTMETYSKV-TR-FFFICN 193
G +I++ D M D A N L ++ + SK+ TR ICN
Sbjct: 243 IDGSIESGFIRILV----DIMQSDIKATNKLLYGQPDKKDKKRKKKRSKLLTRPIICICN 298
Query: 194 YI-SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252
+ + +E L C K S+ + R+ IC++E +N+ +A++ L ++QGD+R
Sbjct: 299 NLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAINDLIDLAQGDVRN 358
Query: 253 AITYLQGAARLFGSSITSKDLISVSGYP 280
I LQ A S++ S+D S S P
Sbjct: 359 CINNLQFLA----SNVDSRDS-SASDKP 381
>SGD|S000005743 [details] [associations]
symbol:RFC1 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006272 "leading strand elongation"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 SGD:S000005743 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 EMBL:BK006948 GO:GO:0051301 GO:GO:0006298 EMBL:X92441
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0000278 GO:GO:0003689
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 PDB:1SXJ PDBsum:1SXJ
KO:K10754 eggNOG:COG5275 HOGENOM:HOG000164552 OMA:KLRMDER
OrthoDB:EOG4WDHM8 EMBL:U03102 EMBL:U26027 EMBL:Z75125 PIR:S44763
RefSeq:NP_014860.1 ProteinModelPortal:P38630 SMR:P38630
DIP:DIP-2527N IntAct:P38630 MINT:MINT-619267 STRING:P38630
PaxDb:P38630 PeptideAtlas:P38630 EnsemblFungi:YOR217W GeneID:854392
KEGG:sce:YOR217W CYGD:YOR217w EvolutionaryTrace:P38630
NextBio:976553 Genevestigator:P38630 GermOnline:YOR217W
Uniprot:P38630
Length = 861
Score = 148 (57.2 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 49/178 (27%), Positives = 78/178 (43%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG---INV-VRTKIKTFAAVA 141
+ YGPPG GKTT A +A +L G + +LE NASD R +N V+ + + V
Sbjct: 350 MLYGPPGIGKTTAAHLVAQEL-GYD-----ILEQNASDVRSKTLLNAGVKNALDNMSVVG 403
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV-TRFFFICNYISRI-I 199
+ +II+DE D M+ + + + + K T ICN + +
Sbjct: 404 YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKM 463
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
P C +F+ + SR++ I E LD + L ++GD+R+ I L
Sbjct: 464 RPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 521
>POMBASE|SPAC26H5.02c [details] [associations]
symbol:SPAC26H5.02c "DNA replication ATPase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000731
"DNA synthesis involved in DNA repair" evidence=ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR006642 Pfam:PF00004 SMART:SM00382
SMART:SM00734 PomBase:SPAC26H5.02c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GO:GO:0046872 GO:GO:0003677 GO:GO:0000731
GO:GO:0043142 GO:GO:0033567 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF InterPro:IPR021886 Pfam:PF12002 HSSP:P38251
PIR:T38421 RefSeq:NP_594449.2 ProteinModelPortal:O13984
STRING:O13984 EnsemblFungi:SPAC26H5.02c.1 GeneID:2542096
KEGG:spo:SPAC26H5.02c OrthoDB:EOG4Z924S NextBio:20803168
Uniprot:O13984
Length = 504
Score = 145 (56.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 67/248 (27%), Positives = 106/248 (42%)
Query: 24 STTQSSPEKSEDEVK--RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVR---VLTNTLE 78
S+ QS+ + E E +K + ++P E+ RPK + + QEE+V ++ N +E
Sbjct: 57 SSHQSATKFIEPEPSPTKKTKLTRRDTRPLAERARPKSLDEYVGQEELVGERGIIRNLIE 116
Query: 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
C M+ +G GTGKTT A IA KSR +E++A+ + R +
Sbjct: 117 QDRCNSMILWGSAGTGKTTLARLIAVTT------KSRFIEISATSTT-VADCRKIFEDSQ 169
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-R 197
+G++ II LDE AQ + M VT S R
Sbjct: 170 NYLTLTGRKT---------IIFLDEVHRFNR-AQQDIFLPMVEKGLVTLIGATTENPSFR 219
Query: 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHIC--NEEGL-----NLDAEALSTLSSISQGDL 250
+ L SRC F K L+ + + + H C E L N++ + +S+I+ GD
Sbjct: 220 LNSALISRCPVFVLKKLTRDNVKKILNHACLLESERLGSSMPNVETSIIDYISAITDGDA 279
Query: 251 RRAITYLQ 258
R A+ L+
Sbjct: 280 RMALNALE 287
Score = 116 (45.9 bits), Expect = 0.00053, P = 0.00053
Identities = 38/119 (31%), Positives = 56/119 (47%)
Query: 7 KIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ 66
K H S KF + SP K K K+ + ++P E+ RPK + + Q
Sbjct: 49 KHHLETNVSSHQSATKFIEPEPSPTK-----KTKLTR--RDTRPLAERARPKSLDEYVGQ 101
Query: 67 EEVVR---VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122
EE+V ++ N +E C M+ +G GTGKTT A IA KSR +E++A+
Sbjct: 102 EELVGERGIIRNLIEQDRCNSMILWGSAGTGKTTLARLIAVTT------KSRFIEISAT 154
>TIGR_CMR|CHY_2201 [details] [associations]
symbol:CHY_2201 "ATPase, AAA family" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0019538 "protein metabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0017111 eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:YP_361014.1
ProteinModelPortal:Q3AA20 STRING:Q3AA20 GeneID:3726481
KEGG:chy:CHY_2201 PATRIC:21277469 HOGENOM:HOG000017624
BioCyc:CHYD246194:GJCN-2200-MONOMER Uniprot:Q3AA20
Length = 444
Score = 144 (55.7 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 60/219 (27%), Positives = 93/219 (42%)
Query: 50 PWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
P + RP+ + + QE ++ ++L + + ++FYGPPGTGKTT A IA
Sbjct: 16 PLAYRMRPRSLDEFIGQEHILGEGKLLRRAILSDRLGSLIFYGPPGTGKTTLARIIASTT 75
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
KS +NA G+ +R IK G+R ++ +DE
Sbjct: 76 ------KSGFESINAVTS-GVGEIREVIKKAKEREKYYGERT---------VLFIDEIHR 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH- 225
+ Q+AL +E + V N + PL SR F FKPL E + V
Sbjct: 120 FNKAQQDALLPEVEAGTIVLIGATTENPYFEVNAPLLSRSRIFEFKPLEPEHIREIVRRA 179
Query: 226 -ICNEEGLN-----LDAEALSTLSSISQGDLRRAITYLQ 258
+ E GL + EAL L +++ GD R A+ ++
Sbjct: 180 LVDKERGLGEYKVEISEEALDHLVTMAAGDARAALNGIE 218
>POMBASE|SPBC23E6.07c [details] [associations]
symbol:rfc1 "DNA replication factor C complex subunit
Rfc1" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006272 "leading strand elongation" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0003689 "DNA clamp loader activity" evidence=IC]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357
PomBase:SPBC23E6.07c Pfam:PF00533 GO:GO:0005524 GO:GO:0005730
GO:GO:0051301 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0007049
GO:GO:0000790 GO:GO:0043596 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389 KO:K10754
eggNOG:COG5275 EMBL:AB027931 PIR:T39941 RefSeq:NP_596607.1
ProteinModelPortal:O60182 IntAct:O60182 STRING:O60182
EnsemblFungi:SPBC23E6.07c.1 GeneID:2540426 KEGG:spo:SPBC23E6.07c
HOGENOM:HOG000164552 OMA:KLRMDER OrthoDB:EOG4WDHM8 NextBio:20801553
Uniprot:O60182
Length = 934
Score = 148 (57.2 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 74/270 (27%), Positives = 116/270 (42%)
Query: 14 NKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVL 73
NK + + T++ +P +D K V+Q Q W++ Y K K ++ +
Sbjct: 351 NKKESQPSQIWTSKYAPTSLKDICGNK--GVVQKLQKWLQDYH-KNRKSNFNKPGPDGL- 406
Query: 74 TNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133
L A +L GPPG GKTT A +A +L G + VLELNASD R ++ +
Sbjct: 407 --GLYKA----VLLSGPPGIGKTTAAHLVA-KLEGYD-----VLELNASDTRSKRLLDEQ 454
Query: 134 IKTFAAVAVGSGQRRGGY------PCPPYK---IIILDEADSMTEDAQNALRR-TMETYS 183
+ V Q GY P K ++I+DE D M+ + + + M
Sbjct: 455 L-----FGVTDSQSLAGYFGTKANPVDMAKSRLVLIMDEIDGMSSGDRGGVGQLNMIIKK 509
Query: 184 KVTRFFFICNYISRI-IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTL 242
+ ICN + + PL RF+ M SR++ I EGL L +A+ L
Sbjct: 510 SMIPIICICNDRAHPKLRPLDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQL 569
Query: 243 SSISQGDLRRAITYLQGAARLFGSSITSKD 272
+Q D+R+ I L +L S +T ++
Sbjct: 570 VQGTQSDMRQIINLLS-TYKLSCSEMTPQN 598
>UNIPROTKB|F1RG33 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR010372
Pfam:PF00004 Pfam:PF06144 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887
GeneTree:ENSGT00550000075029 GO:GO:0009360 EMBL:FP016225
Ensembl:ENSSSCT00000008778 Uniprot:F1RG33
Length = 978
Score = 121 (47.7 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 47/150 (31%), Positives = 69/150 (46%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGP 90
+D RK P ++ + E + K +H++ + +L L+ + P L GP
Sbjct: 319 QDRPTRKPRPSVEPACGGKEATASSKWK--SHEQVLEEMLEAELDPSGRPRQKVALLCGP 376
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PG GKTT A IA G Y V+E+NASDDR RT+I+ AA + S GG
Sbjct: 377 PGLGKTTLAHVIARHA-G---YC--VVEMNASDDRSPEAFRTRIE--AATQMESVLGSGG 428
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTME 180
P +++DE D A N L ++
Sbjct: 429 RP----NCLVIDEIDGAPTAAINVLLSVLD 454
Score = 67 (28.6 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 191 ICN-YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
ICN + + L + F P ++ R+ I + G+ D AL+ L + D
Sbjct: 490 ICNDQFAPSLRQLKPQALLLHFPPTLPSRLTQRLQEISQQRGMQADPGALAALCEKTDND 549
Query: 250 LRRAITYLQ 258
+R I LQ
Sbjct: 550 IRACINALQ 558
Score = 44 (20.5 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 270 SKDLISVSGYPTGGSGGAFRGVQ 292
++D V G P GG+GG GVQ
Sbjct: 871 ARDGPQVDGGPLGGTGGT--GVQ 891
>RGD|620619 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0043234 "protein complex" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 RGD:620619 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0006260 GO:GO:0043565 GO:GO:0000122 GO:GO:0003690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
HSSP:P26996 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
HOVERGEN:HBG004167 EMBL:AF030050 IPI:IPI00210191 RefSeq:NP_445999.1
UniGene:Rn.103272 ProteinModelPortal:Q9Z2R7 STRING:Q9Z2R7
GeneID:89809 KEGG:rno:89809 UCSC:RGD:620619 NextBio:617672
Genevestigator:Q9Z2R7 Uniprot:Q9Z2R7
Length = 1104
Score = 134 (52.2 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 50/175 (28%), Positives = 81/175 (46%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-KTFAAVAVGS 144
L GPPG GKTTTA + +L G Y +ELNASD R N ++ + ++ ++
Sbjct: 631 LLSGPPGVGKTTTASLVCQEL-G---YS--YVELNASDTRSKNSLKAIVAESLNNTSIKG 684
Query: 145 GQRRGGYPCPPYK-IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI---IE 200
G P + +I+DE D M + + + K T+ IC R I
Sbjct: 685 FYTSGASPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 744
Query: 201 PLASRCAKFRF-KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254
L C RF +P E++ S+ +L I +EGL + A++ + + D+R+ +
Sbjct: 745 SLVHYCFDLRFQRPRVEQIKSA-MLSIAFKEGLKIPPPAMNEIILGANQDVRQVL 798
Score = 58 (25.5 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRP-KQVKDVAHQEEVVRVLTNTLETANC 82
S + +P+K+ D+ KRK++P + +P K P K A +EE RV L+ A
Sbjct: 499 SKLERTPQKN-DQGKRKLSPTKRELEPKKSKLTPLKHSPRKAVKEEE-RVCPRGLD-AKE 555
Query: 83 PH 84
PH
Sbjct: 556 PH 557
Score = 51 (23.0 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 51 WVEKYRPKQVKDVAHQE 67
WV+KY+P +K++ Q+
Sbjct: 570 WVDKYKPTSLKNIIGQQ 586
>ZFIN|ZDB-GENE-070410-99 [details] [associations]
symbol:rfc1 "replication factor C (activator 1) 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070410-99 GO:GO:0005524 GO:GO:0006260 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GeneTree:ENSGT00670000098003
GO:GO:0003689 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
EMBL:CR759875 EMBL:BX000461 IPI:IPI00851894 RefSeq:NP_001082960.2
UniGene:Dr.79216 Ensembl:ENSDART00000143948 GeneID:100037336
KEGG:dre:100037336 NextBio:20788508 ArrayExpress:F1Q5P6 Bgee:F1Q5P6
Uniprot:F1Q5P6
Length = 1147
Score = 131 (51.2 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 48/174 (27%), Positives = 80/174 (45%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-KTFAAVAVGS 144
L GPPG GKTTTA + +L G Y +E+NAS R N ++ I ++ ++ +
Sbjct: 641 LLSGPPGVGKTTTAALVCEEL-G---YS--YVEMNASCTRSKNSLKEVIAESLNNTSIKN 694
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI---IEP 201
++I+DE D M + + M K ++ IC R I
Sbjct: 695 FYTGASQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRS 754
Query: 202 LASRCAKFRF-KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254
LA+ C RF +P E++ + ++ I +EGL + AL+ + S D+R+ +
Sbjct: 755 LANYCYDLRFQRPRVEQIKGA-MMSIAFKEGLKIPPPALNEVILASNQDIRQVL 807
Score = 58 (25.5 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 47 SSQPWVEKYRPKQVKDVAHQE 67
SS WV+KYRP+ +K++ Q+
Sbjct: 574 SSLLWVDKYRPRSLKNLIGQQ 594
Score = 42 (19.8 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 21 QKFSTTQSSPEKSEDEVKR-KMAPVLQSSQPWVEKYRPKQVKDV-----AHQEEVVRVLT 74
QK S +S E++ K+ K P ++S + EK K+ K V + +E+ V+
Sbjct: 15 QKASNGSTSTSTDEEQKKKQKSRPKVKSPKS-DEKPSGKRKKRVIVDSDSEEEKKVKTKK 73
Query: 75 NTLETA 80
+T ET+
Sbjct: 74 STKETS 79
Score = 41 (19.5 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQP 50
K +KSP + ST + + S+ V K+AP P
Sbjct: 129 KVSSSKSP--VKSPSTVKGGVKSSQPTVSPKVAPTPPKQMP 167
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 12 GKNKSPNFTQKFSTTQSS--PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV 60
GK +S + K SS P KS VK + + P V PKQ+
Sbjct: 116 GKKESDSGKAKQVKVSSSKSPVKSPSTVKGGVKSSQPTVSPKVAPTPPKQM 166
>TIGR_CMR|GSU_2230 [details] [associations]
symbol:GSU_2230 "DNA polymerase III, delta prime subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR004622 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008408 GO:GO:0003887
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 HOGENOM:HOG000192593
OMA:AFIKIDQ RefSeq:NP_953279.1 ProteinModelPortal:Q74AW9
GeneID:2687562 KEGG:gsu:GSU2230 PATRIC:22027315
ProtClustDB:CLSK828770 BioCyc:GSUL243231:GH27-2186-MONOMER
Uniprot:Q74AW9
Length = 323
Score = 107 (42.7 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
P K I+D+AD + A NAL +T+E + + I+ + SRC RF PL
Sbjct: 105 PMKACIIDDADRLNPAAANALLKTLEEPPGNALLILLTTNPAGILPTVRSRCQLLRFSPL 164
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
E V+ + + G A L+ +S++ G L RA+ +G+A
Sbjct: 165 PERVIEEYL----TDAGREPAAARLA--ASLAGGSLSRALEMEEGSA 205
Score = 72 (30.4 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 20/46 (43%), Positives = 21/46 (45%)
Query: 63 VAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLF 107
V QE V VL L + H LF G G GK TTALA F
Sbjct: 6 VLGQETAVNVLQRALRSGKTAHAYLFEGIEGCGKMTTALAFIEAAF 51
>UNIPROTKB|Q71ZF6 [details] [associations]
symbol:LMOf2365_1533 "ATPase, AAA family domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR008824 Pfam:PF05496 SMART:SM00382 GO:GO:0000166
GO:GO:0006281 GO:GO:0006310 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0009378 eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HOGENOM:HOG000017624 OMA:RLLVIAY
RefSeq:YP_014131.1 ProteinModelPortal:Q71ZF6 SMR:Q71ZF6
STRING:Q71ZF6 DNASU:2797899 GeneID:2797899 KEGG:lmf:LMOf2365_1533
PATRIC:20324305 Uniprot:Q71ZF6
Length = 427
Score = 107 (42.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
QP + RPK + ++ Q +V +++ ++ M+ YGPPG GKT+ A AIA
Sbjct: 4 QPLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMILYGPPGIGKTSIASAIA-- 61
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
G Y R L ++ + + VV + K V
Sbjct: 62 --GSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTV 94
Score = 74 (31.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN-YISRIIEP-LASRCAKFRFKPLS 215
I++LDE + + Q+ L +E+ + + N YI+ I P + SR F KPL+
Sbjct: 95 ILLLDEVHRLDKAKQDFLLPLLESGAIILIGATTSNPYIA--INPAIRSRTQIFELKPLT 152
Query: 216 -EEVMSSRVLHICNEE-GL-NLDAE----ALSTLSSISQGDLRRAITYLQ 258
E++M + + ++E GL N D E A ++ S GD+R A+ L+
Sbjct: 153 VEDIMITMDRALSDKERGLGNYDVEIDEVAKKHFATASNGDVRSALNALE 202
>ZFIN|ZDB-GENE-050522-508 [details] [associations]
symbol:chtf18 "CTF18, chromosome transmission
fidelity factor 18 homolog (S. cerevisiae)" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-050522-508 GO:GO:0005524 GO:GO:0017111 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OMA:TMLAYNL EMBL:BX323038
EMBL:BX004779 IPI:IPI00810052 RefSeq:NP_001103572.2
UniGene:Dr.83128 ProteinModelPortal:F1QF60
Ensembl:ENSDART00000092058 GeneID:554366 KEGG:dre:554366
NextBio:20880755 ArrayExpress:F1QF60 Bgee:F1QF60 Uniprot:F1QF60
Length = 957
Score = 140 (54.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 57/209 (27%), Positives = 88/209 (42%)
Query: 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126
EE++ + + L GPPG GKTT A IA G Y V+E+NASDDR
Sbjct: 351 EEILEAELDQYKRPKFKVALLSGPPGLGKTTLAHIIAKHA-G---YN--VVEINASDDRS 404
Query: 127 INVVRTKIKTFAAV--AVGSGQRRG--------GYPCPPYKIII--LDEADSMT--EDAQ 172
+ + +I T + +G+ ++ G P I++ L+ DS E
Sbjct: 405 AELFQKRIDTATQMKSVLGANEKPNCLIIDEIDGAPAAAINILLATLNRKDSKDGEETGV 464
Query: 173 NALRRTMETYSKVTR-FFFICN--YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
NAL++ + S + R ICN Y+ + PL + F ++ R+ I
Sbjct: 465 NALKKKKKKQSVLLRPIICICNDLYVPAL-RPLRQQAFLLVFPQTLPSRLAQRLAEISRR 523
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+G+ D L L + D+R I LQ
Sbjct: 524 QGMKADTGTLMALCEKTDNDIRSCINTLQ 552
Score = 43 (20.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE 78
SS+ WV+++ P+ D+ + R L L+
Sbjct: 276 SSRLWVDQFSPQHYTDLLSDDFTNRCLLKWLK 307
>TIGR_CMR|BA_4703 [details] [associations]
symbol:BA_4703 "ATP-dependent protease LonB" species:198094
"Bacillus anthracis str. Ames" [GO:0004252 "serine-type
endopeptidase activity" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0030436 "asexual sporulation" evidence=ISS] InterPro:IPR002078
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008268
InterPro:IPR008269 InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362
PROSITE:PS01046 PROSITE:PS50045 SMART:SM00382 GO:GO:0005524
GO:GO:0006355 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006508 GO:GO:0006351
GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 PANTHER:PTHR10046 HSSP:P08177
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
InterPro:IPR014251 TIGRFAMs:TIGR02902 RefSeq:NP_846916.1
RefSeq:YP_021351.1 RefSeq:YP_030615.1 ProteinModelPortal:Q81LC0
IntAct:Q81LC0 DNASU:1083686 EnsemblBacteria:EBBACT00000010075
EnsemblBacteria:EBBACT00000014143 EnsemblBacteria:EBBACT00000022575
GeneID:1083686 GeneID:2816064 GeneID:2851723 KEGG:ban:BA_4703
KEGG:bar:GBAA_4703 KEGG:bat:BAS4368
BioCyc:BANT260799:GJAJ-4423-MONOMER
BioCyc:BANT261594:GJ7F-4571-MONOMER Uniprot:Q81LC0
Length = 557
Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 41/116 (35%), Positives = 60/116 (51%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
TQK S + S K E E RKM + ++P EK RP D+ QE+ ++ L L
Sbjct: 32 TQKVSIDRES--KKELEQLRKMREI-SLTEPLAEKVRPTSFLDIVGQEDGIKSLKAALCG 88
Query: 80 ANCPHMLFYGPPGTGKTTTA-LAIAHQLFGPEL-YKSRV--LELNAS----DDRGI 127
N H++ YGPPG GKT A L + P+ +++ +EL+A+ D+RGI
Sbjct: 89 PNPQHVIIYGPPGVGKTAAARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGI 144
>WB|WBGene00010676 [details] [associations]
symbol:K08F4.1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006974
GO:GO:0017111 eggNOG:COG0470 KO:K11269 GeneTree:ENSGT00550000075029
EMBL:Z68879 PIR:T23478 RefSeq:NP_501841.1 ProteinModelPortal:Q21350
SMR:Q21350 PaxDb:Q21350 EnsemblMetazoa:K08F4.1.1
EnsemblMetazoa:K08F4.1.2 EnsemblMetazoa:K08F4.1.3 GeneID:177879
KEGG:cel:CELE_K08F4.1 UCSC:K08F4.1.2 CTD:177879 WormBase:K08F4.1
HOGENOM:HOG000017144 InParanoid:Q21350 OMA:LRCDLST NextBio:898772
Uniprot:Q21350
Length = 850
Score = 139 (54.0 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 75/290 (25%), Positives = 120/290 (41%)
Query: 15 KSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA-----HQEEV 69
+S + K+ S S+ V R + L+ W E ++V D+ + EV
Sbjct: 261 ESSLWVNKYEAKNFSDLLSDSTVNRNILTWLKM---WDECVFHQKVDDLLASLGEKEREV 317
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI-- 127
+ + + + +L GP G GK+T A +A Q G Y + +++NASD R +
Sbjct: 318 LHMDNGKIRRPSSKMLLLSGPAGLGKSTLARIVARQA-G---YST--IDVNASDARTVAD 371
Query: 128 --NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME-TYSK 184
V+ +KT + + + QR C +ILDE D D L R ++ T K
Sbjct: 372 LNKVLEGAVKT--SRTLDADQRPA---C-----LILDEIDGTPIDTIRHLVRCIQATGKK 421
Query: 185 VTR--FFFICNYI-SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241
R ICN + + + L + ++V++ R+ IC+ E L D L
Sbjct: 422 AIRRPIIGICNNLYTPALRDLRGVAWCVQLVATKQDVLAKRLEEICDRERLRCDLSTLRK 481
Query: 242 LSSISQGDLRRAITYLQG---AARLFGSSITSKDLISVSGYPTGGSGGAF 288
L + D+R +I LQ AAR +I K + V GGS F
Sbjct: 482 LCELCANDMRHSINTLQWVAVAARKSNRAIGMKLIHEVIEKEKGGSASIF 531
>UNIPROTKB|Q8WVB6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:CH471112 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 EMBL:AK024476 EMBL:AL031033 EMBL:BC006278
EMBL:BC006437 EMBL:BC018184 IPI:IPI00414657 IPI:IPI00872454
IPI:IPI00895945 RefSeq:NP_071375.1 UniGene:Hs.153850
ProteinModelPortal:Q8WVB6 SMR:Q8WVB6 IntAct:Q8WVB6 STRING:Q8WVB6
DMDM:74751544 PaxDb:Q8WVB6 PRIDE:Q8WVB6 Ensembl:ENST00000262315
Ensembl:ENST00000455171 GeneID:63922 KEGG:hsa:63922 UCSC:uc002cke.4
UCSC:uc002ckf.4 CTD:63922 GeneCards:GC16P000838 HGNC:HGNC:18435
MIM:613201 neXtProt:NX_Q8WVB6 PharmGKB:PA134908713
HOVERGEN:HBG062099 KO:K11269 GenomeRNAi:63922 NextBio:65649
ArrayExpress:Q8WVB6 Bgee:Q8WVB6 CleanEx:HS_CHTF18
Genevestigator:Q8WVB6 Uniprot:Q8WVB6
Length = 975
Score = 128 (50.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGPPGTGK 95
RK P ++ ++ E P + K +H++ + +L L+ + P L GPPG GK
Sbjct: 323 RKPRPSVEPARVSKEATAPGKWK--SHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGK 380
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A IA G Y V+E+NASDDR V RT+I+ AA + S GG P
Sbjct: 381 TTLAHVIARHA-G---YS--VVEMNASDDRSPEVFRTRIE--AATQMESVLGAGGKP--- 429
Query: 156 YKIIILDEADSMTEDAQNAL 175
+++DE D A N L
Sbjct: 430 -NCLVIDEIDGAPVAAINVL 448
Score = 56 (24.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 191 ICN-YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
ICN + + L + F P + R+ + +G+ D L+ L + D
Sbjct: 489 ICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDND 548
Query: 250 LRRAITYLQ 258
+R I LQ
Sbjct: 549 IRACINTLQ 557
>TIGR_CMR|DET_1309 [details] [associations]
symbol:DET_1309 "ATPase, AAA family" species:243164
"Dehalococcoides ethenogenes 195" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 GO:GO:0006310 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009378 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:YP_182021.1
ProteinModelPortal:Q3Z6X8 STRING:Q3Z6X8 GeneID:3229452
KEGG:det:DET1309 PATRIC:21609649
BioCyc:DETH243164:GJNF-1310-MONOMER Uniprot:Q3Z6X8
Length = 457
Score = 135 (52.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 68/260 (26%), Positives = 114/260 (43%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHML 86
PE+ D + +S P + RP+ + + Q+ ++ R L +E P ++
Sbjct: 2 PERIMDLFDAGAEKLKKSQSPLAARMRPEGLSEFVGQDHLIGEGRALRLAIEGDKIPSLI 61
Query: 87 FYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146
F+GPPG+GKTT A IA +L + + S + ++A G+ +R ++ A + +
Sbjct: 62 FWGPPGSGKTTLANIIARRL---DAHFSALSAVSA----GVADLRRVVEE-ARERLKFER 113
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
RR I+ +DE + Q+A+ +E + V N + L SR
Sbjct: 114 RR--------TILFIDEIHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSALLSRA 165
Query: 207 AKFRFKPLSEEVMSSRVLHICNE-EGL-NLDA----EALSTLSSISQGDLRRAITYLQGA 260
+ PLSE+ +S + + GL N A EA +SS +QGD R A+ L+ A
Sbjct: 166 QVYVLNPLSEKEISLILKRSLEDPSGLGNYHARLLEEAEKHISSFAQGDARIALNILELA 225
Query: 261 ARLFGSSITSKDLISVSGYP 280
++ KD V G P
Sbjct: 226 VM---TTPPDKDGWRVVGLP 242
>TIGR_CMR|BA_4628 [details] [associations]
symbol:BA_4628 "ATPase, AAA family" species:198094
"Bacillus anthracis str. Ames" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017111 KO:K07478
ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
HOGENOM:HOG000017624 OMA:RLLVIAY RefSeq:NP_846846.1
RefSeq:YP_021276.1 RefSeq:YP_030542.1 ProteinModelPortal:Q81LJ0
SMR:Q81LJ0 DNASU:1085339 EnsemblBacteria:EBBACT00000011786
EnsemblBacteria:EBBACT00000016240 EnsemblBacteria:EBBACT00000022391
GeneID:1085339 GeneID:2814872 GeneID:2851063 KEGG:ban:BA_4628
KEGG:bar:GBAA_4628 KEGG:bat:BAS4294
BioCyc:BANT260799:GJAJ-4350-MONOMER
BioCyc:BANT261594:GJ7F-4499-MONOMER Uniprot:Q81LJ0
Length = 428
Score = 107 (42.7 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
QP + RP +++V Q+ +V ++L ++ + M+ YGPPGTGKT+ A AIA
Sbjct: 3 QPLAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIA 60
Score = 68 (29.0 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 35/123 (28%), Positives = 52/123 (42%)
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
++ILDE + + Q+ L +E+ N I + SRC F L+EE
Sbjct: 94 VLILDEVHRLDKAKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFELHALTEE 153
Query: 218 ---VMSSRVLHICNEEGLN-----LDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
+ R L E+GL + EAL ++ S GD+R A L+ A SS T
Sbjct: 154 DLLIGLKRALED-KEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVL---SSFT 209
Query: 270 SKD 272
+ D
Sbjct: 210 TDD 212
>ASPGD|ASPL0000007447 [details] [associations]
symbol:uvsF species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005663 "DNA replication
factor C complex" evidence=ISA] [GO:0006260 "DNA replication"
evidence=ISA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0006260 EMBL:AACD01000107 EMBL:BN001301
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 HOGENOM:HOG000164552
OrthoDB:EOG4WDHM8 RefSeq:XP_663907.1 ProteinModelPortal:Q5AZH7
STRING:Q5AZH7 EnsemblFungi:CADANIAT00006686 GeneID:2871090
KEGG:ani:AN6303.2 OMA:PKMKPFD Uniprot:Q5AZH7
Length = 1092
Score = 127 (49.8 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 51/187 (27%), Positives = 87/187 (46%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI----KTFAAV 140
++ +GPPG GKTT A +A +L G + V+E NASD R +V + + T +
Sbjct: 522 VMIHGPPGIGKTTAAHLVA-KLEGYD-----VVESNASDTRSKKLVESGLLGVLDTTSLQ 575
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF--FFICNYISRI 198
S + ++I+DE D M+ + + M +K T+ ICN R+
Sbjct: 576 GYFSTSNKKVESGKKNLVLIMDEVDGMSAGDRGGVG-AMAAIAKKTQIPLILICNE-RRL 633
Query: 199 --IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
++P + F+ + E + +R+L IC E + + + L +L + D+R+ I
Sbjct: 634 PKMKPFDHVTFEIPFRRPTVEQVRARLLTICFREKMKIPPQVLDSLIEGTHADIRQVINM 693
Query: 257 LQGAARL 263
L A RL
Sbjct: 694 LS-AVRL 699
Score = 54 (24.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K + + +K EDE RKMA + + + E R K+VK ++V
Sbjct: 411 KAAEKYEAKKKEEDEKIRKMAAEIDAEEKRNEAERRKEVKSGQTTQDV 458
Score = 41 (19.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 5 FGKIHKSGKNKSPNFTQKFSTTQSSPEKSE 34
F K G+ KS N ++SS K+E
Sbjct: 84 FASSKKKGRTKSSNADTNNKPSKSSATKTE 113
>RGD|1310473 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity factor 18
homolog (S. cerevisiae)" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR010372 Pfam:PF00004 Pfam:PF06144 SMART:SM00382
RGD:1310473 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 EMBL:CH473948 GO:GO:0003887 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OrthoDB:EOG44QT0B
GO:GO:0009360 OMA:TMLAYNL IPI:IPI00369267 RefSeq:NP_001099243.1
UniGene:Rn.53402 Ensembl:ENSRNOT00000026139 GeneID:287146
KEGG:rno:287146 UCSC:RGD:1310473 NextBio:625609 Uniprot:D4AC99
Length = 968
Score = 125 (49.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 47/140 (33%), Positives = 67/140 (47%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGPPGTGK 95
RK P ++ ++ V K P K +H++ + +L L+ + P L GPPG GK
Sbjct: 316 RKPRPGVEPTR--VGKEAPAPGKWKSHEQVLEEMLEAELDPSRRPRQKVALLCGPPGLGK 373
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A +A G Y V+E+NASDDR RT+I+ AA + S GG P
Sbjct: 374 TTLAHVVARHA-G---YC--VVEMNASDDRSPEAFRTRIE--AATQMESVLGAGGRP--- 422
Query: 156 YKIIILDEADSMTEDAQNAL 175
+++DE D A N L
Sbjct: 423 -NCLVIDEIDGAPTAAINVL 441
Score = 55 (24.4 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 21/85 (24%), Positives = 32/85 (37%)
Query: 176 RRTMETYSKVTR-FFFICN-YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233
RR +TR ICN + + L + P + R+ I + G+
Sbjct: 466 RRRRAEGGLLTRPIICICNDQFTPSLRQLKQQALLLHVPPTLPSRLVQRLQEISLQHGMR 525
Query: 234 LDAEALSTLSSISQGDLRRAITYLQ 258
D AL+ L + D+R I LQ
Sbjct: 526 SDPGALAALCEKTDNDIRACINTLQ 550
>MGI|MGI:2384887 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity
factor 18" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
MGI:MGI:2384887 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 CTD:63922 HOVERGEN:HBG062099 KO:K11269 EMBL:AK077947
EMBL:BC024142 IPI:IPI00153429 RefSeq:NP_663384.2 UniGene:Mm.102540
ProteinModelPortal:Q8BIW9 SMR:Q8BIW9 STRING:Q8BIW9
PhosphoSite:Q8BIW9 PaxDb:Q8BIW9 PRIDE:Q8BIW9
Ensembl:ENSMUST00000048054 GeneID:214901 KEGG:mmu:214901
UCSC:uc008bbk.2 GeneTree:ENSGT00550000075029 HOGENOM:HOG000067805
InParanoid:Q8BIW9 OrthoDB:EOG44QT0B NextBio:374509 Bgee:Q8BIW9
Genevestigator:Q8BIW9 Uniprot:Q8BIW9
Length = 969
Score = 124 (48.7 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 46/140 (32%), Positives = 68/140 (48%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGPPGTGK 95
RK P +++++ E P + K +H++ + +L L+ + P L GPPG GK
Sbjct: 318 RKPRPGVETTRVGKEATAPGKWK--SHEQALEEMLEAELDPSQRPRQKVALLCGPPGLGK 375
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A +A G Y V+E+NASDDR RT+I+ AA + S GG P
Sbjct: 376 TTLAHVVARHA-G---YC--VVEMNASDDRSPEAFRTRIE--AATQMESVLGVGGRP--- 424
Query: 156 YKIIILDEADSMTEDAQNAL 175
+++DE D A N L
Sbjct: 425 -NCLVIDEIDGAPTAAINVL 443
Score = 56 (24.8 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 27/99 (27%), Positives = 37/99 (37%)
Query: 163 EADSM-TEDAQNALRRTMETYSKVTR-FFFICN-YISRIIEPLASRCAKFRFKPLSEEVM 219
EAD T A RR E +TR ICN + + L + P +
Sbjct: 454 EADQGGTAVAAGGRRRRAEG-GLLTRPIICICNDQFTPSLRQLKQQALLLHVPPTLPSRL 512
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
R+ I + G+ D AL L + D+R I LQ
Sbjct: 513 VQRLQEISLQHGMRSDPGALVALCEKTDNDIRACINTLQ 551
>UNIPROTKB|E1B8Q4 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OMA:TMLAYNL
EMBL:DAAA02057284 IPI:IPI00717859 RefSeq:NP_001179389.1
UniGene:Bt.60318 Ensembl:ENSBTAT00000026311 GeneID:517007
KEGG:bta:517007 NextBio:20872353 Uniprot:E1B8Q4
Length = 978
Score = 118 (46.6 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 41/120 (34%), Positives = 58/120 (48%)
Query: 64 AHQEEVVRVLTNTLETANCPHM---LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120
+H++ + +L L+ + P L GPPG GKTT A IA G Y V+E+N
Sbjct: 347 SHEQVLEEMLEAELDPSGRPRQKVALLCGPPGLGKTTLAHVIARHA-G---YC--VVEMN 400
Query: 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180
ASDDR RT+I+ AA + S GG P +++DE D A N L ++
Sbjct: 401 ASDDRSPEAFRTRIE--AATQMESVLGAGGRP----NCLVIDEIDGAPTAAINVLLSVLD 454
Score = 61 (26.5 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 21/84 (25%), Positives = 31/84 (36%)
Query: 176 RRTMETYSKVTRFFFICNY-ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL 234
RR E + ICN + + L + F P + R+ I G+
Sbjct: 475 RRRAEAGLLMRPIICICNDPFAPSLRQLKQQALLLHFPPTLPSRLMQRLQEISLRRGMRA 534
Query: 235 DAEALSTLSSISQGDLRRAITYLQ 258
D AL+ L + D+R I LQ
Sbjct: 535 DPGALAALCEKTDNDIRACINALQ 558
Score = 40 (19.1 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 266 SSITSKDLISVSGYPTGGSG 285
+S ++D V G P GGSG
Sbjct: 867 ASARARDGPQVDGGPPGGSG 886
>GENEDB_PFALCIPARUM|PFA0545c [details] [associations]
symbol:PFA0545c "replication factor c protein,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006260
GO:GO:0017111 EMBL:AL844501 GO:GO:0005663 RefSeq:XP_001351041.1
ProteinModelPortal:Q8I233 EnsemblProtists:PFA0545c:mRNA
GeneID:813246 KEGG:pfa:PFA_0545c HOGENOM:HOG000283786
ProtClustDB:CLSZ2500531 Uniprot:Q8I233
Length = 1167
Score = 136 (52.9 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 60/250 (24%), Positives = 113/250 (45%)
Query: 14 NKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYR-PKQVKDV--AHQEEVV 70
NK+ NF +K+ S +++ + + VL + W +K R K + + E+V
Sbjct: 323 NKNINFVEKYRAKYFSELLTDESINLE---VLLWLKKWNDKIRNEKNINTYNDMNPEQVT 379
Query: 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130
+ N E +L G G GKTT A IA+ +K ++E+N SDDR +
Sbjct: 380 K--DNDFERV----LLLGGSSGKGKTTLAYVIANH------FKFNIIEINGSDDRNKETL 427
Query: 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN--ALRRTMETYSKVTRF 188
I++ V + S + P + I+DE D ++ QN ++ + + K +
Sbjct: 428 IPFIES--VVCINSVTSK------P-NLCIIDEIDGLSSTHQNIDSIMKFLNKKDKKNKS 478
Query: 189 FF------ICNYI-SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241
ICN I + ++ L + ++ E++ R+ +IC++E + ++ EA++
Sbjct: 479 IIKRPIICICNDIYHKSLKELRKISKVVIVENINIEMLKIRINYICDKENIKINNEAINK 538
Query: 242 LSSISQGDLR 251
L I + D+R
Sbjct: 539 LIDICKSDIR 548
>UNIPROTKB|Q8I233 [details] [associations]
symbol:PFA_0545c "Replication factor c protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006260
GO:GO:0017111 EMBL:AL844501 GO:GO:0005663 RefSeq:XP_001351041.1
ProteinModelPortal:Q8I233 EnsemblProtists:PFA0545c:mRNA
GeneID:813246 KEGG:pfa:PFA_0545c HOGENOM:HOG000283786
ProtClustDB:CLSZ2500531 Uniprot:Q8I233
Length = 1167
Score = 136 (52.9 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 60/250 (24%), Positives = 113/250 (45%)
Query: 14 NKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYR-PKQVKDV--AHQEEVV 70
NK+ NF +K+ S +++ + + VL + W +K R K + + E+V
Sbjct: 323 NKNINFVEKYRAKYFSELLTDESINLE---VLLWLKKWNDKIRNEKNINTYNDMNPEQVT 379
Query: 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130
+ N E +L G G GKTT A IA+ +K ++E+N SDDR +
Sbjct: 380 K--DNDFERV----LLLGGSSGKGKTTLAYVIANH------FKFNIIEINGSDDRNKETL 427
Query: 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQN--ALRRTMETYSKVTRF 188
I++ V + S + P + I+DE D ++ QN ++ + + K +
Sbjct: 428 IPFIES--VVCINSVTSK------P-NLCIIDEIDGLSSTHQNIDSIMKFLNKKDKKNKS 478
Query: 189 FF------ICNYI-SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241
ICN I + ++ L + ++ E++ R+ +IC++E + ++ EA++
Sbjct: 479 IIKRPIICICNDIYHKSLKELRKISKVVIVENINIEMLKIRINYICDKENIKINNEAINK 538
Query: 242 LSSISQGDLR 251
L I + D+R
Sbjct: 539 LIDICKSDIR 548
>UNIPROTKB|P35251 [details] [associations]
symbol:RFC1 "Replication factor C subunit 1" species:9606
"Homo sapiens" [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0007004 "telomere
maintenance via telomerase" evidence=TAS] [GO:0008047 "enzyme
activator activity" evidence=TAS] [GO:0000084 "S phase of mitotic
cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0043085 "positive regulation of
catalytic activity" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0006355
GO:GO:0006351 GO:GO:0008047 GO:GO:0000084 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH471069 GO:GO:0007004
GO:GO:0000722 Pathway_Interaction_DB:faspathway Reactome:REACT_383
GO:GO:0006283 GO:GO:0003689 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754
eggNOG:COG5275 EMBL:L23320 EMBL:Z22642 EMBL:AF040250 EMBL:AY600371
EMBL:AK291612 EMBL:BC035297 EMBL:BC051751 EMBL:BC051786
IPI:IPI00375358 IPI:IPI00375359 PIR:A49651 PIR:JN0599
RefSeq:NP_001191676.1 RefSeq:NP_002904.3 UniGene:Hs.507475 PDB:2EBU
PDB:2K6G PDB:2K7F PDBsum:2EBU PDBsum:2K6G PDBsum:2K7F
ProteinModelPortal:P35251 SMR:P35251 IntAct:P35251 STRING:P35251
PhosphoSite:P35251 DMDM:56757608 PaxDb:P35251 PRIDE:P35251
DNASU:5981 Ensembl:ENST00000349703 Ensembl:ENST00000381897
GeneID:5981 KEGG:hsa:5981 UCSC:uc003gtx.2 UCSC:uc003gty.2 CTD:5981
GeneCards:GC04M039291 HGNC:HGNC:9969 HPA:CAB009520 MIM:102579
neXtProt:NX_P35251 PharmGKB:PA34338 HOGENOM:HOG000013116
HOVERGEN:HBG004167 InParanoid:P35251 OMA:GQINFPG OrthoDB:EOG4D26P3
ChiTaRS:RFC1 EvolutionaryTrace:P35251 GenomeRNAi:5981 NextBio:23281
PMAP-CutDB:P35251 ArrayExpress:P35251 Bgee:P35251 CleanEx:HS_RFC1
Genevestigator:P35251 GermOnline:ENSG00000035928 Uniprot:P35251
Length = 1148
Score = 127 (49.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 52/214 (24%), Positives = 93/214 (43%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+ ++ +D H + + + + ++ L GPPG GKTTTA + +L G
Sbjct: 614 WLRNWQKSSSEDKKHAAKFGK-FSGKDDGSSFKAALLSGPPGVGKTTTASLVCQEL-G-- 669
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP------CPPYKIIILDEA 164
Y +ELNASD R ++ +K A ++ + +G Y +I+DE
Sbjct: 670 -YS--YVELNASDTRS----KSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEV 722
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRI---IEPLASRCAKFRF-KPLSEEVMS 220
D M + + + K T+ IC R I L C RF +P E++
Sbjct: 723 DGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKG 782
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254
+ ++ I +EGL + A++ + + D+R+ +
Sbjct: 783 A-MMSIAFKEGLKIPPPAMNEIILGANQDIRQVL 815
Score = 53 (23.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 15 KSPNFTQKFSTTQSSPEKS----EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQE 67
KS +F ++ + S K+ +D + K+ +L WV+KY+P +K + Q+
Sbjct: 551 KSLDFKEQVAEETSGDSKARNLADDSSENKVENLL-----WVDKYKPTSLKTIIGQQ 602
>UNIPROTKB|F1S4I7 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:FP089679 Ensembl:ENSSSCT00000009614
Uniprot:F1S4I7
Length = 1146
Score = 123 (48.4 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 49/175 (28%), Positives = 79/175 (45%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-KTFAAVAVGS 144
L GPPG GKTTTA + +L G Y +ELNASD R N ++ I ++ ++
Sbjct: 647 LLSGPPGVGKTTTASLVCQEL-G---YS--YVELNASDTRSKNSLKEIIAESLNNTSIKG 700
Query: 145 GQRRGGYPCPPYK-IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI---IE 200
G K +I+DE D M + + + K T+ IC R I
Sbjct: 701 FYSSGAAHSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 760
Query: 201 PLASRCAKFRF-KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254
L C RF +P E++ + ++ I +EGL + A++ + + D+R+ +
Sbjct: 761 SLVHYCFDLRFQRPRVEQIKGA-MMSIAFKEGLKIPPPAMNEIILGANQDIRQVL 814
Score = 51 (23.0 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDV 63
S + +P+K +D+ KRK++P + S+ K PK+ +
Sbjct: 500 SKLERTPQK-KDQGKRKVSPTKKESESKKCKQTPKRESSI 538
Score = 49 (22.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 51 WVEKYRPKQVKDVAHQE 67
WV+KY+P +K + Q+
Sbjct: 585 WVDKYKPASLKTIIGQQ 601
Score = 47 (21.6 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 2 RANFGKIHKS-GKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQP 50
R F + S K + P + K T + S E+ K++ + SQP
Sbjct: 248 RETFSSLQASLCKAEKPKYPHKVKTERFSDERKNYSPKKQKCESSKESQP 297
Score = 43 (20.2 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 9 HKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEE 68
HK + SP + K + + E S ++ + + + + E PK++K ++E
Sbjct: 304 HKIRETSSPKASSKLALLKRKEESSNNKTEPMGSKRKEDAIELKETRTPKKIKGSPAKKE 363
Query: 69 VV 70
+
Sbjct: 364 SI 365
>TIGR_CMR|CJE_0191 [details] [associations]
symbol:CJE_0191 "ATPase, AAA family protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0019538 "protein metabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496
SMART:SM00382 GO:GO:0000166 GO:GO:0006281 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0006310 GO:GO:0009378
eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 HOGENOM:HOG000017624 RefSeq:YP_178215.1
ProteinModelPortal:Q5HWX0 STRING:Q5HWX0 GeneID:3230954
KEGG:cjr:CJE0191 PATRIC:20042091 OMA:RLLVIAY
BioCyc:CJEJ195099:GJC0-196-MONOMER Uniprot:Q5HWX0
Length = 393
Score = 102 (41.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 55 YRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK 113
+RP+ D+ Q E++ + PH +F+G G+GKTT A +A + FG + Y+
Sbjct: 7 FRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAGSGKTTFARVVAKE-FGLDFYE 64
Score = 68 (29.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/104 (24%), Positives = 44/104 (42%)
Query: 156 YK-IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
YK +I +DE +++ Q L ME Y + N + + SR F FK L
Sbjct: 87 YKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSL 146
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+ + + +L + + ++D EA L + D R + L+
Sbjct: 147 GVKELETLLLRVQEKMKFSIDKEAKDFL--LKSADARAMLNLLE 188
>UNIPROTKB|F1PVV3 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 InterPro:IPR021886 Pfam:PF12002
OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:AAEX03017467
Ensembl:ENSCAFT00000014690 Uniprot:F1PVV3
Length = 468
Score = 118 (46.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 55/202 (27%), Positives = 88/202 (43%)
Query: 42 APVLQ--SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKT 96
APV Q +P K RP ++D Q V +L + LET P ++ +GPPG GKT
Sbjct: 19 APVRQMLEGKPLATKMRPDTLQDYIGQSRAVGQDTLLRSLLETTEIPSLILWGPPGCGKT 78
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156
T A IA+ + + R + L+A++ + N VR IK A +R+
Sbjct: 79 TLAHIIANN---SKKHSIRFVTLSATNAK-TNDVRDVIKQ-AQNEKSFFKRK-------- 125
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-RIIEPLASRCAKFRFKPLS 215
I+ +DE + Q+ +E +T S ++ L SRC + L
Sbjct: 126 TILFIDEIHRFNKSQQDTFLPHVEC-GTITLIGATTENPSFQVNAALLSRCRVIVLEKLP 184
Query: 216 EEVMSSRVLHICNEEGLN-LDA 236
E M + ++ N G++ LD+
Sbjct: 185 VEAMVTILMRAINSLGIHVLDS 206
Score = 50 (22.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGA--ARL 263
+E + ++ +A+ TL+ +S GD R + LQ A ARL
Sbjct: 221 SEPSVFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARL 258
>UNIPROTKB|E2QW76 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AAEX03002535
Ensembl:ENSCAFT00000025512 Uniprot:E2QW76
Length = 1152
Score = 120 (47.3 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 50/181 (27%), Positives = 78/181 (43%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN----VVRTKIKTFAAVA 141
L GPPG GKTTTA + +L G Y +ELNASD R N VV + +
Sbjct: 646 LLSGPPGVGKTTTASLVCQEL-G---YS--YVELNASDTRSKNSLKEVVAESLNNTSITG 699
Query: 142 VGSGQRRGG----YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
S + G + +I+DE D M + + + K T+ IC R
Sbjct: 700 FYSTSQHGSDGAAHSVGSKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDR 759
Query: 198 I---IEPLASRCAKFRF-KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRA 253
I L C RF +P E++ + ++ I +EGL + A++ + + D+R+
Sbjct: 760 NHPKIRSLVHYCFDLRFQRPRVEQIKGA-MMSIAFKEGLKIPPPAMNEIILGANQDIRQV 818
Query: 254 I 254
+
Sbjct: 819 L 819
Score = 54 (24.1 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL 77
S + +P+K +D+ KRK++P + S+ + PK+ + ++ VL L
Sbjct: 499 SKLERTPQK-KDQGKRKISPTKKESESKRSRLTPKKDSSIKSVKKETSVLWRCL 551
Score = 50 (22.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 27 QSSPEKSEDEVKRKMAPVLQSSQP----WVEKYRPKQVKDVAHQE 67
Q + E ++D R +A ++ WV+KY+P +K + Q+
Sbjct: 556 QVAEETNDDSRARNLAGDSSENKVENLLWVDKYKPTSLKTIIGQQ 600
Score = 44 (20.5 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 8 IHKSGKNKSPNF--TQKFSTTQS--SPEK 32
+ K+GK+KSP+ T++FS + SP+K
Sbjct: 258 LSKAGKHKSPHKVKTEQFSDGRKNCSPKK 286
>UNIPROTKB|E7EXA6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0017111
EMBL:AL031033 HGNC:HGNC:18435 IPI:IPI00178203
ProteinModelPortal:E7EXA6 SMR:E7EXA6 PRIDE:E7EXA6
Ensembl:ENST00000317063 OMA:TMLAYNL PhylomeDB:E7EXA6
ArrayExpress:E7EXA6 Bgee:E7EXA6 Uniprot:E7EXA6
Length = 1184
Score = 128 (50.1 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGPPGTGK 95
RK P ++ ++ E P + K +H++ + +L L+ + P L GPPG GK
Sbjct: 518 RKPRPSVEPARVSKEATAPGKWK--SHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGK 575
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A IA G Y V+E+NASDDR V RT+I+ AA + S GG P
Sbjct: 576 TTLAHVIARHA-G---YS--VVEMNASDDRSPEVFRTRIE--AATQMESVLGAGGKP--- 624
Query: 156 YKIIILDEADSMTEDAQNAL 175
+++DE D A N L
Sbjct: 625 -NCLVIDEIDGAPVAAINVL 643
>UNIPROTKB|F8WCC1 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524
EMBL:AL031033 HGNC:HGNC:18435 IPI:IPI00927525
ProteinModelPortal:F8WCC1 SMR:F8WCC1 Ensembl:ENST00000440239
ArrayExpress:F8WCC1 Bgee:F8WCC1 Uniprot:F8WCC1
Length = 456
Score = 123 (48.4 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 45/130 (34%), Positives = 65/130 (50%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGPPGTGK 95
RK P ++ ++ E P + K +H++ + +L L+ + P L GPPG GK
Sbjct: 324 RKPRPSVEPARVSKEATAPGKWK--SHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGK 381
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A IA G Y V+E+NASDDR V RT+I+ AA + S GG P
Sbjct: 382 TTLAHVIARHA-G---YS--VVEMNASDDRSPEVFRTRIE--AATQMESVLGAGGKP--- 430
Query: 156 YKIIILDEAD 165
+++DE D
Sbjct: 431 -NCLVIDEID 439
>UNIPROTKB|Q2GE30 [details] [associations]
symbol:NSE_0377 "Putative uncharacterized protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
eggNOG:COG0470 EMBL:CP000237 GenomeReviews:CP000237_GR KO:K02341
RefSeq:YP_506266.1 ProteinModelPortal:Q2GE30 STRING:Q2GE30
GeneID:3931434 KEGG:nse:NSE_0377 PATRIC:22680825
HOGENOM:HOG000127302 OMA:FEIAIRY ProtClustDB:CLSK2528047
BioCyc:NSEN222891:GHFU-402-MONOMER Uniprot:Q2GE30
Length = 266
Score = 118 (46.6 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 36/119 (30%), Positives = 56/119 (47%)
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216
KIII+ + MT A NAL + +E + I Y+ +I + SRC F PL E
Sbjct: 80 KIIIISHFEIMTAGAANALLKVLEEGKQTATLILIARYLQQITNTVRSRCFHLYFPPLKE 139
Query: 217 EVMSSRVL-HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
+++ H N ++ EA +L ++ G L R +T A+ F S + KDL+
Sbjct: 140 NTEIEKLIAHYKNLLEKSIGEEAKDSLPTL--GRLDRGLTTQFQIAQKF-SEASLKDLL 195
>TIGR_CMR|NSE_0377 [details] [associations]
symbol:NSE_0377 "hypothetical protein" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
eggNOG:COG0470 EMBL:CP000237 GenomeReviews:CP000237_GR KO:K02341
RefSeq:YP_506266.1 ProteinModelPortal:Q2GE30 STRING:Q2GE30
GeneID:3931434 KEGG:nse:NSE_0377 PATRIC:22680825
HOGENOM:HOG000127302 OMA:FEIAIRY ProtClustDB:CLSK2528047
BioCyc:NSEN222891:GHFU-402-MONOMER Uniprot:Q2GE30
Length = 266
Score = 118 (46.6 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 36/119 (30%), Positives = 56/119 (47%)
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216
KIII+ + MT A NAL + +E + I Y+ +I + SRC F PL E
Sbjct: 80 KIIIISHFEIMTAGAANALLKVLEEGKQTATLILIARYLQQITNTVRSRCFHLYFPPLKE 139
Query: 217 EVMSSRVL-HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
+++ H N ++ EA +L ++ G L R +T A+ F S + KDL+
Sbjct: 140 NTEIEKLIAHYKNLLEKSIGEEAKDSLPTL--GRLDRGLTTQFQIAQKF-SEASLKDLL 195
>ZFIN|ZDB-GENE-040426-2415 [details] [associations]
symbol:wrnip1 "Werner helicase interacting protein
1" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-040426-2415 GO:GO:0005524 GO:GO:0017111
eggNOG:COG2256 HOGENOM:HOG000017623 KO:K07478 InterPro:IPR021886
Pfam:PF12002 CTD:56897 HOVERGEN:HBG062192 OMA:PGHWDAD
OrthoDB:EOG457568 GeneTree:ENSGT00390000008538 EMBL:CU693494
EMBL:BC067729 IPI:IPI00503321 RefSeq:NP_998085.1 UniGene:Dr.82012
STRING:Q6NW46 Ensembl:ENSDART00000004848 GeneID:405856
KEGG:dre:405856 InParanoid:Q6NW46 NextBio:20817818 Uniprot:Q6NW46
Length = 546
Score = 123 (48.4 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 60/241 (24%), Positives = 105/241 (43%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
L++ +P E RP +++ Q +++ +L + L++ P ++ +GPPG GKTT A
Sbjct: 111 LKNQKPLAELLRPSTLEEYFGQNKLIGEQTLLRSLLKSQEIPSLILWGPPGCGKTTLAHI 170
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
IA + + R + L+A+ ++ VR IK + R C ++ +
Sbjct: 171 IASSI--KQKGTGRFVTLSATS-ASVSDVREVIKQ------AQNELR---LCKRKTVLFI 218
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-RIIEPLASRCAKFRFKPLSEEVMS 220
DE + Q+ +E +T S ++ L SRC + LS E +
Sbjct: 219 DEIHRFNKSQQDTFLPHVEC-GTITLIGATTENPSFQVNSALLSRCRVLVLERLSVEAVG 277
Query: 221 S-----------RVL-----H---ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
S R+L H IC+E + ++ +AL TL+ + GD R A+ LQ A
Sbjct: 278 SILRRAVDFLDLRILDSEERHSSEICSEAQVCVEQKALDTLAHLCDGDARAALNGLQLAV 337
Query: 262 R 262
+
Sbjct: 338 Q 338
>TIGR_CMR|SPO_2741 [details] [associations]
symbol:SPO_2741 "DNA polymerase III, delta prime subunit,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 SMART:SM00382
GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0017111
KO:K02341 HOGENOM:HOG000142449 RefSeq:YP_167948.1
ProteinModelPortal:Q5LPV8 GeneID:3194106 KEGG:sil:SPO2741
PATRIC:23378901 OMA:NLDRKQT ProtClustDB:PRK07471 Uniprot:Q5LPV8
Length = 373
Score = 113 (44.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 36/116 (31%), Positives = 53/116 (45%)
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216
+++I+D AD M A NAL + +E T + + SR++ + SRC R PLS
Sbjct: 147 RVVIVDSADEMNTSAANALLKMLEEPPARTTLLLVSHQPSRLLPTIRSRCRTLRLTPLSP 206
Query: 217 EVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
M S + G + E L+ L+S S G R + L G A L+ I D
Sbjct: 207 ADMQSALEQA--GAGTEVMPEHLAALASGSVGRALRLLN-LDGLA-LYAELIALLD 258
Score = 46 (21.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 57 PKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL 106
P++ + Q+ + + + H L GP G GK T A IA L
Sbjct: 17 PRETPRLFGQDAAEQAFLSAYGSDRLHHGWLLTGPEGVGKATLAWRIARFL 67
>UNIPROTKB|F1PFW9 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00550000075029
OMA:TMLAYNL EMBL:AAEX03004670 Ensembl:ENSCAFT00000031175
Uniprot:F1PFW9
Length = 1140
Score = 114 (45.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 41/120 (34%), Positives = 57/120 (47%)
Query: 64 AHQEEVVRVLTNTLETANCPHM---LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120
+H++ + +L L+ + P L GPPG GKTT A IA G Y V+E+N
Sbjct: 503 SHEQVLEDMLEADLDPSRRPRQKVALLCGPPGLGKTTLAHVIARHA-G---YS--VVEMN 556
Query: 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180
ASDDR RT I+ AA + S GG P +++DE D A N L ++
Sbjct: 557 ASDDRSPEAFRTCIE--AATQMESVLGAGGKP----NCLVIDEIDGAPVAAINVLLNVLD 610
Score = 56 (24.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 191 ICN-YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
ICN + L + F P ++SSR+ +EG+ D AL+ L + D
Sbjct: 646 ICNDQFVPSLRQLRQQAFLLHFPP----ILSSRLTQRL-QEGMQADPGALAALCEKTDND 700
Query: 250 LRRAITYLQ 258
+R I LQ
Sbjct: 701 IRACINTLQ 709
>RGD|628836 [details] [associations]
symbol:Wrnip1 "Werner helicase interacting protein 1"
species:10116 "Rattus norvegicus" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=ISO;ISS] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR006642
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SMART:SM00734 RGD:628836
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887
GO:GO:0000731 GO:GO:0030174 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 InterPro:IPR021886 Pfam:PF12002 CTD:56897
HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568
GeneTree:ENSGT00390000008538 EMBL:AY136827 EMBL:BC098652
IPI:IPI00191457 RefSeq:NP_758835.1 UniGene:Rn.8783
ProteinModelPortal:Q8CG07 STRING:Q8CG07 PhosphoSite:Q8CG07
PRIDE:Q8CG07 Ensembl:ENSRNOT00000023332 GeneID:282835
KEGG:rno:282835 UCSC:RGD:628836 InParanoid:Q8CG07 NextBio:624901
ArrayExpress:Q8CG07 Genevestigator:Q8CG07
GermOnline:ENSRNOG00000017040 Uniprot:Q8CG07
Length = 660
Score = 112 (44.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 51/193 (26%), Positives = 85/193 (44%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+P +K RP ++D Q V +L + LET P ++ +GPPG GKTT A IA+
Sbjct: 220 KPLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANN 279
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
+ + R + L+A++ + N VR IK A +R+ I+ +DE
Sbjct: 280 ---SKKHSIRFVTLSATNAK-TNDVRDVIKQ-AQNEKSFFKRK--------TILFIDEIH 326
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVL 224
+ Q+ +E +T S ++ L SRC + L E M + ++
Sbjct: 327 RFNKSQQDTFLPHVEC-GTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILM 385
Query: 225 HICNEEGLN-LDA 236
N G++ LD+
Sbjct: 386 RAINSLGIHVLDS 398
Score = 51 (23.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 227 CNEE-GLNLDAEALSTLSSISQGDLRRAITYLQGA--ARL 263
C+ E + ++ +A+ TL+ +S GD R + LQ A ARL
Sbjct: 411 CSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL 450
>UNIPROTKB|Q8CG07 [details] [associations]
symbol:Wrnip1 "ATPase WRNIP1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SMART:SM00734 RGD:628836 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 eggNOG:COG2256
HOGENOM:HOG000017623 KO:K07478 InterPro:IPR021886 Pfam:PF12002
CTD:56897 HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568
GeneTree:ENSGT00390000008538 EMBL:AY136827 EMBL:BC098652
IPI:IPI00191457 RefSeq:NP_758835.1 UniGene:Rn.8783
ProteinModelPortal:Q8CG07 STRING:Q8CG07 PhosphoSite:Q8CG07
PRIDE:Q8CG07 Ensembl:ENSRNOT00000023332 GeneID:282835
KEGG:rno:282835 UCSC:RGD:628836 InParanoid:Q8CG07 NextBio:624901
ArrayExpress:Q8CG07 Genevestigator:Q8CG07
GermOnline:ENSRNOG00000017040 Uniprot:Q8CG07
Length = 660
Score = 112 (44.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 51/193 (26%), Positives = 85/193 (44%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+P +K RP ++D Q V +L + LET P ++ +GPPG GKTT A IA+
Sbjct: 220 KPLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANN 279
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
+ + R + L+A++ + N VR IK A +R+ I+ +DE
Sbjct: 280 ---SKKHSIRFVTLSATNAK-TNDVRDVIKQ-AQNEKSFFKRK--------TILFIDEIH 326
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVL 224
+ Q+ +E +T S ++ L SRC + L E M + ++
Sbjct: 327 RFNKSQQDTFLPHVEC-GTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILM 385
Query: 225 HICNEEGLN-LDA 236
N G++ LD+
Sbjct: 386 RAINSLGIHVLDS 398
Score = 51 (23.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 227 CNEE-GLNLDAEALSTLSSISQGDLRRAITYLQGA--ARL 263
C+ E + ++ +A+ TL+ +S GD R + LQ A ARL
Sbjct: 411 CSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARL 450
>TIGR_CMR|BA_0028 [details] [associations]
symbol:BA_0028 "DNA polymerase III, delta prime subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0008408 GO:GO:0003887 KO:K02341 TIGRFAMs:TIGR00678
HOGENOM:HOG000192593 RefSeq:NP_842598.1 RefSeq:YP_016633.2
RefSeq:YP_026317.1 ProteinModelPortal:Q81W10 DNASU:1085794
EnsemblBacteria:EBBACT00000013310 EnsemblBacteria:EBBACT00000013749
EnsemblBacteria:EBBACT00000019869 GeneID:1085794 GeneID:2816307
GeneID:2852708 KEGG:ban:BA_0028 KEGG:bar:GBAA_0028 KEGG:bat:BAS0030
OMA:RIESGNH ProtClustDB:PRK08058 BioCyc:BANT260799:GJAJ-37-MONOMER
BioCyc:BANT261594:GJ7F-38-MONOMER Uniprot:Q81W10
Length = 327
Score = 116 (45.9 bits), Expect = 0.00026, P = 0.00026
Identities = 46/197 (23%), Positives = 86/197 (43%)
Query: 70 VRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPELYK-------SRVLELNA 121
V++L N++ H L G GTGK TA+ +A + + + +++
Sbjct: 16 VKMLMNSIAKERISHAYLLEGEKGTGKFATAIQMAKSFLCSQRNRVEPCHVCTNCKRIDS 75
Query: 122 SDDRGINVVRTKIKTFAAVAVGSGQR---RGGYPCPPYKIIILDEADSMTEDAQNALRRT 178
+ +++V+ + + Q + G K+ I++ AD MT +A NAL +
Sbjct: 76 GNHPNLHIVKPDGLSIKKQQIHDLQEEFSKTGLEANK-KVYIIEHADRMTANAANALLKF 134
Query: 179 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEA 238
+E S T + +I+ + SRC F+PL E + R+ +EG+ + +
Sbjct: 135 LEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRL----QDEGITV---S 187
Query: 239 LSTLSSISQGDLRRAIT 255
LSTL++ A+T
Sbjct: 188 LSTLAAQLTNSFDEALT 204
>TIGR_CMR|CBU_1570 [details] [associations]
symbol:CBU_1570 "Holliday junction DNA helicase RuvB"
species:227377 "Coxiella burnetii RSA 493" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] [GO:0009379 "Holliday junction
helicase complex" evidence=ISS] HAMAP:MF_00016 InterPro:IPR003593
InterPro:IPR004605 InterPro:IPR008823 InterPro:IPR008824
Pfam:PF05491 Pfam:PF05496 ProDom:PD005323 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006310 GO:GO:0009378 GO:GO:0009432 eggNOG:COG2255
HOGENOM:HOG000218623 KO:K03551 OMA:HIIAKEM ProtClustDB:PRK00080
PANTHER:PTHR13779:SF2 TIGRFAMs:TIGR00635 RefSeq:NP_820553.1
ProteinModelPortal:Q83BE0 SMR:Q83BE0 GeneID:1209480
KEGG:cbu:CBU_1570 PATRIC:17931903
BioCyc:CBUR227377:GJ7S-1549-MONOMER Uniprot:Q83BE0
Length = 351
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 35/94 (37%), Positives = 52/94 (55%)
Query: 39 RKMAPVLQSSQPWVEK-YRPKQVKD------VAHQEEV-VRVLTNTLETANCPHMLFYGP 90
R + +QS++P +E+ RPK++ D V Q ++ +R TN E + H+L +GP
Sbjct: 8 RLIGATVQSNEPDLERSIRPKRLSDYIGQAAVREQMDIFIRAATNRREALD--HVLIFGP 65
Query: 91 PGTGKTTTALAIAHQL-FGPELYKSRVLELNASD 123
PG GKTT A IAH++ G + VLE A D
Sbjct: 66 PGLGKTTLAHIIAHEMQAGLKQTSGPVLE-KAGD 98
>UNIPROTKB|H7C1P0 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF48019
EMBL:AC112907 Pfam:PF08542 HGNC:HGNC:9972 ChiTaRS:RFC4
Ensembl:ENST00000417876 Bgee:H7C1P0 Uniprot:H7C1P0
Length = 111
Score = 95 (38.5 bits), Expect = 0.00031, P = 0.00031
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 239 LSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGY-PTGGSGGAFRGVQ 292
++ L +S+GDLR+AIT+LQ A RL G IT K + ++G P G F Q
Sbjct: 2 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQ 57
>UNIPROTKB|I3LC39 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111
GeneTree:ENSGT00550000075029 OMA:TMLAYNL EMBL:FP016225
Ensembl:ENSSSCT00000031631 Uniprot:I3LC39
Length = 1007
Score = 121 (47.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 47/150 (31%), Positives = 69/150 (46%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM---LFYGP 90
+D RK P ++ + E + K +H++ + +L L+ + P L GP
Sbjct: 351 QDRPTRKPRPSVEPACGGKEATASSKWK--SHEQVLEEMLEAELDPSGRPRQKVALLCGP 408
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PG GKTT A IA G Y V+E+NASDDR RT+I+ AA + S GG
Sbjct: 409 PGLGKTTLAHVIARHA-G---YC--VVEMNASDDRSPEAFRTRIE--AATQMESVLGSGG 460
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTME 180
P +++DE D A N L ++
Sbjct: 461 RP----NCLVIDEIDGAPTAAINVLLSVLD 486
Score = 44 (20.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 270 SKDLISVSGYPTGGSGGAFRGVQ 292
++D V G P GG+GG GVQ
Sbjct: 900 ARDGPQVDGGPLGGTGGT--GVQ 920
>UNIPROTKB|F1P1N3 [details] [associations]
symbol:WRNIP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030174 "regulation
of DNA-dependent DNA replication initiation" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 InterPro:IPR021886
Pfam:PF12002 OMA:PGHWDAD GeneTree:ENSGT00390000008538 EMBL:AC157662
IPI:IPI00597973 Ensembl:ENSGALT00000020968 ArrayExpress:F1P1N3
Uniprot:F1P1N3
Length = 559
Score = 108 (43.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 29/80 (36%), Positives = 42/80 (52%)
Query: 30 PEKSEDEVKRKMAPVLQ--SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPH 84
PE+ R A V Q QP ++ RP ++D QE V+ +L + LE+ P
Sbjct: 98 PEEGGGPTLRG-ASVAQRLEGQPLADRLRPDTLRDYVGQERVLGAHTLLRSLLESHEIPS 156
Query: 85 MLFYGPPGTGKTTTALAIAH 104
++ +GPPG GKTT A IA+
Sbjct: 157 LILWGPPGCGKTTLAHIIAN 176
Score = 52 (23.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 234 LDAEALSTLSSISQGDLRRAITYLQGA--ARLFGSSIT 269
++ +ALSTL+ + GD R + LQ A ARL T
Sbjct: 318 IEEKALSTLAYLCDGDARTGLNGLQLAVQARLAAGKTT 355
>UNIPROTKB|F1NEP9 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 EMBL:AADN02015876 EMBL:AADN02015877 EMBL:AADN02015878
EMBL:AADN02015879 EMBL:AADN02015880 IPI:IPI00574416
Ensembl:ENSGALT00000023118 ArrayExpress:F1NEP9 Uniprot:F1NEP9
Length = 1147
Score = 119 (46.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 51/182 (28%), Positives = 81/182 (44%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR---------TKIKT 136
L GPPG GKTTTA + +L G Y +ELNASD R N ++ T IK
Sbjct: 644 LLSGPPGVGKTTTASLVCKEL-G---YS--YVELNASDTRSKNSLKEVVAESLNNTSIKD 697
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
F + G+ G ++I+DE D M + + + + T+ IC
Sbjct: 698 FCS---GTSSSVSGK-----HVLIMDEVDGMAGNEDRGGIQELIGLIRHTKVPIICMCND 749
Query: 197 RI---IEPLASRCAKFRF-KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252
R I L C RF +P E++ + ++ I +EGL + A++ + + D+R+
Sbjct: 750 RNHPKIRSLVHYCFDLRFQRPRLEQIKGA-MMSIAFKEGLKIPPPAMNEIILAANQDIRQ 808
Query: 253 AI 254
+
Sbjct: 809 VL 810
Score = 47 (21.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 51 WVEKYRPKQVKDVAHQE 67
WV+KY+P +K + Q+
Sbjct: 584 WVDKYKPVSLKAIIGQQ 600
>UNIPROTKB|E1C339 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AADN02015876 EMBL:AADN02015877
EMBL:AADN02015878 EMBL:AADN02015879 EMBL:AADN02015880
IPI:IPI00683437 Ensembl:ENSGALT00000029582 ArrayExpress:E1C339
Uniprot:E1C339
Length = 1153
Score = 119 (46.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 51/182 (28%), Positives = 81/182 (44%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR---------TKIKT 136
L GPPG GKTTTA + +L G Y +ELNASD R N ++ T IK
Sbjct: 648 LLSGPPGVGKTTTASLVCKEL-G---YS--YVELNASDTRSKNSLKEVVAESLNNTSIKD 701
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
F + G+ G ++I+DE D M + + + + T+ IC
Sbjct: 702 FCS---GTSSSVSGK-----HVLIMDEVDGMAGNEDRGGIQELIGLIRHTKVPIICMCND 753
Query: 197 RI---IEPLASRCAKFRF-KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252
R I L C RF +P E++ + ++ I +EGL + A++ + + D+R+
Sbjct: 754 RNHPKIRSLVHYCFDLRFQRPRLEQIKGA-MMSIAFKEGLKIPPPAMNEIILAANQDIRQ 812
Query: 253 AI 254
+
Sbjct: 813 VL 814
Score = 47 (21.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 51 WVEKYRPKQVKDVAHQE 67
WV+KY+P +K + Q+
Sbjct: 588 WVDKYKPVSLKAIIGQQ 604
>MGI|MGI:1926153 [details] [associations]
symbol:Wrnip1 "Werner helicase interacting protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=ISO] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR006642 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SMART:SM00734 MGI:MGI:1926153 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 GO:GO:0000731 GO:GO:0030174 EMBL:AL645808
eggNOG:COG2256 KO:K07478 InterPro:IPR021886 Pfam:PF12002 CTD:56897
HOVERGEN:HBG062192 OMA:PGHWDAD OrthoDB:EOG457568 EMBL:AB056151
EMBL:AK041886 EMBL:AK050368 EMBL:AK082078 EMBL:AK167570
EMBL:AK170542 EMBL:AK170846 EMBL:BC010482 EMBL:BC058744
EMBL:AF208046 IPI:IPI00459468 IPI:IPI00648000 RefSeq:NP_084491.3
UniGene:Mm.286680 ProteinModelPortal:Q91XU0 SMR:Q91XU0
STRING:Q91XU0 PhosphoSite:Q91XU0 PaxDb:Q91XU0 PRIDE:Q91XU0
Ensembl:ENSMUST00000021832 GeneID:78903 KEGG:mmu:78903
UCSC:uc007pzs.2 UCSC:uc007pzt.2 GeneTree:ENSGT00390000008538
InParanoid:Q91XU0 NextBio:349714 Bgee:Q91XU0 CleanEx:MM_WRNIP1
Genevestigator:Q91XU0 GermOnline:ENSMUSG00000021400 Uniprot:Q91XU0
Length = 660
Score = 107 (42.7 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 50/193 (25%), Positives = 84/193 (43%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+P +K RP ++D Q V +L + LE P ++ +GPPG GKTT A IA+
Sbjct: 220 KPLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANN 279
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
+ + R + L+A++ + N VR IK A +R+ I+ +DE
Sbjct: 280 ---SKKHSIRFVTLSATNAK-TNDVRDVIKQ-AQNEKSFFKRK--------TILFIDEIH 326
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVL 224
+ Q+ +E +T S ++ L SRC + L E M + ++
Sbjct: 327 RFNKSQQDTFLPHVEC-GTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILM 385
Query: 225 HICNEEGLN-LDA 236
N G++ LD+
Sbjct: 386 RAINSLGIHVLDS 398
Score = 53 (23.7 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 227 CNEE-GLNLDAEALSTLSSISQGDLRRAITYLQGA--ARLFGSSITSK 271
C+ E + ++ +A+ TL+ +S GD R + LQ A ARL + K
Sbjct: 411 CSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSRKVFCK 458
>UNIPROTKB|Q607H8 [details] [associations]
symbol:MCA1782 "ATPase, AAA family" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 EMBL:AE017282 GenomeReviews:AE017282_GR
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 RefSeq:YP_114220.1
ProteinModelPortal:Q607H8 SMR:Q607H8 GeneID:3102211
KEGG:mca:MCA1782 PATRIC:22607406 Uniprot:Q607H8
Length = 435
Score = 114 (45.2 bits), Expect = 0.00072, P = 0.00072
Identities = 58/238 (24%), Positives = 95/238 (39%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
SQP ++ RP+ + + Q ++ R L ++ M+F+GPPGTGKTT A +A
Sbjct: 6 SQPLADRLRPRTLDEYIGQLHLIEPGRPLYESIRRGRLHSMIFWGPPGTGKTTLARLVAR 65
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
L S VL G+ +R + AV + RR I+ +DE
Sbjct: 66 HADAEFLPVSAVLS-------GVKEIREALAR--AVQFKAAGRRA--------ILFVDEV 108
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE-EVMS--S 221
+ Q+A +E + N + L SR + K L+E +++
Sbjct: 109 HRFNKSQQDAFLAHVEDGTVSFIGATTENPSFEVNSALLSRARVYVLKALTEADLLGVID 168
Query: 222 RVLHICNE----EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDL 273
R L GLN+ + GD RR + L+ A L G ++ S+++
Sbjct: 169 RALSDAERGLGGRGLNMSDPVRMAYVRAADGDARRLLNLLEITADLLDAGQTVVSEEV 226
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 294 294 0.00091 115 3 11 22 0.40 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 168
No. of states in DFA: 603 (64 KB)
Total size of DFA: 190 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.51u 0.11s 25.62t Elapsed: 00:00:01
Total cpu time: 25.54u 0.11s 25.65t Elapsed: 00:00:01
Start: Fri May 10 09:34:36 2013 End: Fri May 10 09:34:37 2013
WARNINGS ISSUED: 1