BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022641
(294 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/248 (91%), Positives = 237/248 (95%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET+NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSGQR GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFF+CNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
SRVLHIC EEGLNLDAEALSTLS +SQGDLRRAITYLQGAARL+GS+I+SKDLISVSG
Sbjct: 181 SRVLHICREEGLNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGSTISSKDLISVSGVI 240
Query: 281 TGGSGGAF 288
+ GA
Sbjct: 241 PQEAVGAL 248
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/238 (94%), Positives = 232/238 (97%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSG
Sbjct: 181 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSG 238
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/238 (94%), Positives = 231/238 (97%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSG
Sbjct: 181 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSG 238
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/238 (93%), Positives = 232/238 (97%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQ WVEKYRPKQ+KDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQQWVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSGQR+G YPCPPYKIII
Sbjct: 61 AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL EE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+R+LHICNEEGL LD EALSTLSS+SQGDLRRAITYLQGAARLFGSSI+SKDLISVSG
Sbjct: 181 NRILHICNEEGLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLISVSG 238
>gi|449449767|ref|XP_004142636.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 336
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/238 (92%), Positives = 231/238 (97%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAV SGQR+GGYPCPP+KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+LHI NEEGL+LD EALSTLSSISQGDLRRAITYLQ AARLFGSSI+SKDL++VSG
Sbjct: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSG 238
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 219/238 (92%), Positives = 229/238 (96%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL++VSG
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSG 238
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/238 (92%), Positives = 229/238 (96%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL++VSG
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSG 238
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/238 (91%), Positives = 227/238 (95%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+R+LHICNEEGL+L EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL+ VSG
Sbjct: 181 NRILHICNEEGLSLGGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLDVSG 238
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/238 (90%), Positives = 231/238 (97%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QSSQPWVEKYRPKQVKDVA+Q+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIVQSSQPWVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ ++GGYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
SR+L+ICNEEGL+LDAE LSTLSSISQGDLRRAITYLQ +ARLFGS I+SKDLISVSG
Sbjct: 181 SRILYICNEEGLHLDAEGLSTLSSISQGDLRRAITYLQSSARLFGSHISSKDLISVSG 238
>gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/238 (89%), Positives = 229/238 (96%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQS+QPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSTQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ QR+ GYPCPP+KII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
SR+L+I EEGL LDAEALSTLSSIS GDLRRAITYLQ AARLFGSSI+S++LISVSG
Sbjct: 181 SRILYISQEEGLCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSG 238
>gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula]
gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula]
gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula]
gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula]
gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula]
Length = 339
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 213/238 (89%), Positives = 229/238 (96%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QS+QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ + + GYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL+EE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
SR+++IC EEG+ LDAE LSTLS+ISQGDLRRAITYLQ AARLFGSSI+SKDLISVSG
Sbjct: 181 SRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKDLISVSG 238
>gi|359492415|ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
Length = 334
Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/238 (92%), Positives = 225/238 (94%), Gaps = 7/238 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFG VLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 113
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 114 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 173
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSG
Sbjct: 174 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSG 231
>gi|356515923|ref|XP_003526646.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/238 (89%), Positives = 227/238 (95%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ Q + GYPCPP+KII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
SR+L+I EEGL LDAEALSTLS IS GDLRRAITYLQ AARLFGSSI+S++LISVSG
Sbjct: 181 SRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSG 238
>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
Length = 339
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/238 (89%), Positives = 229/238 (96%), Gaps = 1/238 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SSQPWVEKYRP+QVKDVAHQEEVVRVLT TL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+GGYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSA-RKGGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+R+LHICNEEGL+LDA+AL+TLS+IS GDLRRAITYLQ AARLFGSSI+S DLISVSG
Sbjct: 180 NRILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSG 237
>gi|225459627|ref|XP_002285875.1| PREDICTED: replication factor C subunit 4 isoform 2 [Vitis
vinifera]
Length = 329
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/238 (90%), Positives = 221/238 (92%), Gaps = 12/238 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 168
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSG
Sbjct: 169 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSG 226
>gi|357160682|ref|XP_003578842.1| PREDICTED: replication factor C subunit 4-like [Brachypodium
distachyon]
Length = 339
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/238 (88%), Positives = 229/238 (96%), Gaps = 1/238 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SSQPWVEKYRP+QVKDVAHQEEVVRVLTNTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLIPSSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASD+RGINVVRTKIK FAAVAVG+ R+GGYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDERGINVVRTKIKDFAAVAVGTA-RKGGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE+VM+
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMT 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+R+LHIC+EEGL LDA+ALSTLS+I QGDLRRAITYLQ AARLFGSSI+S DLISVSG
Sbjct: 180 NRILHICHEEGLTLDAQALSTLSAICQGDLRRAITYLQSAARLFGSSISSTDLISVSG 237
>gi|334182754|ref|NP_001185060.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 332
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/238 (89%), Positives = 222/238 (93%), Gaps = 7/238 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFG VLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 113
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 114 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 173
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL++VSG
Sbjct: 174 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSG 231
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/218 (94%), Positives = 212/218 (97%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQ 218
>gi|30687479|ref|NP_849695.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192019|gb|AEE30140.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 327
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/238 (87%), Positives = 217/238 (91%), Gaps = 12/238 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 168
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL++VSG
Sbjct: 169 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSG 226
>gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
Length = 339
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/225 (90%), Positives = 217/225 (96%), Gaps = 1/225 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVLTNTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
SR++HICNEEGLNLDA+ALSTLS+ISQGDLRRAITYLQ AARLFG
Sbjct: 180 SRIMHICNEEGLNLDAQALSTLSAISQGDLRRAITYLQSAARLFG 224
>gi|449523838|ref|XP_004168930.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 219
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/218 (94%), Positives = 212/218 (97%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAV SGQR+GGYPCPP+KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMET+SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
R+LHI NEEGL+LD EALSTLSSISQGDLRRAITYLQ
Sbjct: 181 KRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQ 218
>gi|356515927|ref|XP_003526648.1| PREDICTED: replication factor C subunit 4-like isoform 3 [Glycine
max]
Length = 335
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/238 (86%), Positives = 220/238 (92%), Gaps = 7/238 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFG VLELNASDDRGINVVRTKIK FAAVAVG+ Q + GYPCPP+KII+
Sbjct: 61 AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIV 113
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 114 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMS 173
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
SR+L+I EEGL LDAEALSTLS IS GDLRRAITYLQ AARLFGSSI+S++LISVSG
Sbjct: 174 SRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSG 231
>gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
Length = 339
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/225 (89%), Positives = 216/225 (96%), Gaps = 1/225 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVLTNTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL SRCAKFRFKPLSEEVMS
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLVSRCAKFRFKPLSEEVMS 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+R++HICNEEGLNLDA+ALSTLS+ISQGDLRRAITYLQ AARLFG
Sbjct: 180 NRIMHICNEEGLNLDAQALSTLSAISQGDLRRAITYLQSAARLFG 224
>gi|356509381|ref|XP_003523428.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/238 (85%), Positives = 218/238 (91%), Gaps = 12/238 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQS+QPWVEKYRPKQVKDVAHQ+EV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSTQPWVEKYRPKQVKDVAHQDEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ QR+ GYPCPP+KII+
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIV 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMS 168
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
SR+L+I EEGL LDAEALSTLSSIS GDLRRAITYLQ AARLFGSSI+S++LISVSG
Sbjct: 169 SRILYISQEEGLCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSG 226
>gi|194700788|gb|ACF84478.1| unknown [Zea mays]
gi|194706416|gb|ACF87292.1| unknown [Zea mays]
gi|413916289|gb|AFW56221.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/225 (88%), Positives = 214/225 (95%), Gaps = 1/225 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVL NTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRT ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 120 LDEADSMTEDAQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
SR++HICNEEGLNL+A+A+STLS ISQGDLRRAITYLQ AARLFG
Sbjct: 180 SRIMHICNEEGLNLNAQAMSTLSVISQGDLRRAITYLQSAARLFG 224
>gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays]
gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/225 (88%), Positives = 214/225 (95%), Gaps = 1/225 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++ SQPWVEKYRP+QVKDVAHQEEV+RVL NTL+TA+ PHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPMSQPWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIA+QL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ R+ GYPCPPYKIII
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTA-RKAGYPCPPYKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRT ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 120 LDEADSMTEDAQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
SR++HICNEEGLNL+A+A+STLS ISQGDLRRAITYLQ AARLFG
Sbjct: 180 SRIMHICNEEGLNLNAQAMSTLSVISQGDLRRAITYLQSAARLFG 224
>gi|356515925|ref|XP_003526647.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/238 (85%), Positives = 216/238 (90%), Gaps = 12/238 (5%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQ+EV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQDEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ Q + GYPCPP+KII+
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIV 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMS 168
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
SR+L+I EEGL LDAEALSTLS IS GDLRRAITYLQ AARLFGSSI+S++LISVSG
Sbjct: 169 SRILYISQEEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISVSG 226
>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/253 (77%), Positives = 218/253 (86%), Gaps = 3/253 (1%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPV+QS+Q WVEKYRP++VKDVAHQEEVVR LTNTLET N PH+LFYGPPGTGKTTTAL
Sbjct: 1 MAPVMQSTQQWVEKYRPRKVKDVAHQEEVVRTLTNTLETGNLPHLLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AI HQLFGPELYK+RVLELNASDDRGINVVRTKIK FA VAVG+G GYPCPP+K++I
Sbjct: 61 AICHQLFGPELYKTRVLELNASDDRGINVVRTKIKDFAGVAVGAGV--SGYPCPPFKVLI 118
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTME YSKVTRF FICNY+SRIIEPLASRCAKFRFKPL E VM
Sbjct: 119 LDEADSMTEDAQNALRRTMENYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLLENVMQ 178
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG-Y 279
+R+ +IC EEGL LD EALSTLS +S+GDLRRAIT LQ A RL+GS+I+SK++ISVSG
Sbjct: 179 NRIQYICQEEGLKLDQEALSTLSRVSEGDLRRAITCLQCAVRLYGSNISSKEIISVSGIV 238
Query: 280 PTGGSGGAFRGVQ 292
P G + Q
Sbjct: 239 PDSVLEGLLKACQ 251
>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
Length = 339
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/238 (84%), Positives = 218/238 (91%), Gaps = 1/238 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+ SSQ WVEKYRPKQVKDVAHQEEVVR LTNTLET N PH+LFYGPPGTGKTTTAL
Sbjct: 1 MAPIHSSSQQWVEKYRPKQVKDVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPE YKSRVLELNASDDRGINVVRTKIK FAAVAVGSG GY CPP+KIII
Sbjct: 61 AIAHQLFGPE-YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRF FICNY+SRIIEPLASRCAKFRFKPL E++M+
Sbjct: 120 LDEADSMTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMT 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+LHIC EEG++LD++AL+ LSSIS+GDLRRAITYLQ AARL+GSSI+S +LISVSG
Sbjct: 180 GRILHICKEEGVHLDSDALTMLSSISEGDLRRAITYLQSAARLYGSSISSNNLISVSG 237
>gi|224106792|ref|XP_002333632.1| predicted protein [Populus trichocarpa]
gi|222837855|gb|EEE76220.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/214 (91%), Positives = 204/214 (95%)
Query: 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124
HQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL+GPELYKS VLELNASDD
Sbjct: 18 HQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKSMVLELNASDD 77
Query: 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184
RGINVV TKIK FA+VAVGSGQ +GGYPCPPYKI ILDEADSMTEDAQNALR TMET+SK
Sbjct: 78 RGINVVWTKIKDFASVAVGSGQCQGGYPCPPYKITILDEADSMTEDAQNALRLTMETFSK 137
Query: 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244
VTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+ SSR+LHICNEEGL LD EALSTLSS
Sbjct: 138 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEITSSRILHICNEEGLTLDGEALSTLSS 197
Query: 245 ISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
ISQGDL RAITYLQGAARLFGSSI+S+DLISVSG
Sbjct: 198 ISQGDLCRAITYLQGAARLFGSSISSEDLISVSG 231
>gi|388513801|gb|AFK44962.1| unknown [Lotus japonicus]
Length = 231
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/210 (90%), Positives = 204/210 (97%), Gaps = 1/210 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QSSQPWVEKYRPKQV+DVA+Q+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIVQSSQPWVEKYRPKQVEDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ ++GGYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDL 250
SR+L+ICNEEG+ LDAE LSTLSSISQGDL
Sbjct: 181 SRILYICNEEGI-LDAEGLSTLSSISQGDL 209
>gi|302808211|ref|XP_002985800.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
gi|300146307|gb|EFJ12977.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
Length = 345
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/248 (75%), Positives = 210/248 (84%), Gaps = 16/248 (6%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP SQ WVEKYRPKQVKDVAHQ+EVVR L N LET N PH+LFYGPPGTGKT+TAL
Sbjct: 1 MAP----SQQWVEKYRPKQVKDVAHQDEVVRTLANALETGNLPHLLFYGPPGTGKTSTAL 56
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A+ +LFGP+LYK+RVLELNASDDRGINVVRTKIK FAAVAVG G YPCPP+K+II
Sbjct: 57 AVTRELFGPQLYKTRVLELNASDDRGINVVRTKIKDFAAVAVGRGV--SDYPCPPFKVII 114
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS----------RIIEPLASRCAKFR 210
LDEADSMTEDAQNALRRTMETYSKVTRF FICNYIS RIIEPLASRCAKFR
Sbjct: 115 LDEADSMTEDAQNALRRTMETYSKVTRFCFICNYISRLCKTIILCFRIIEPLASRCAKFR 174
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
FK L+++VM R+LHIC+EEG+ + +EAL+TLS +S+GDLRRAITYLQ A RL+GSSITS
Sbjct: 175 FKSLNQDVMHGRILHICSEEGVQMGSEALATLSRVSEGDLRRAITYLQSATRLYGSSITS 234
Query: 271 KDLISVSG 278
KD++SVSG
Sbjct: 235 KDILSVSG 242
>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
Length = 332
Score = 349 bits (896), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 166/232 (71%), Positives = 189/232 (81%), Gaps = 2/232 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+QPWVEKYRPK V +VA+QEEVV LT LETAN PH+LFYGPPGTGKT+TALAIA QL
Sbjct: 2 STQPWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRVLELNASD+RGI+VVR K+K FAA AVG+ GYPCPPYK++ILDEADS
Sbjct: 62 YGPELMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVP--GYPCPPYKLLILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQNALRRTMETYS+VTRF FICNY+SRIIEPLASRCAKFRFKPL +M+ R+ HI
Sbjct: 120 MTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHI 179
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
C E + L AL TLS++S GDLRRAI LQ AARL G + L+ VSG
Sbjct: 180 CERESVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGGGHVDRATLLDVSG 231
>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
Length = 332
Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 165/232 (71%), Positives = 188/232 (81%), Gaps = 2/232 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+QPWVEKYRPK V +VA+QEEVV LT LETAN PH+LFYGPPGTGKT+TALAIA QL
Sbjct: 2 STQPWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRVLELNASD+RGI+VVR K+K FAA AVG+ GYPCPPYK++ILDEADS
Sbjct: 62 YGPELMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVP--GYPCPPYKLLILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQNALRRTMETYS+VTRF FICNY+SRIIEPLASRCAKFRFKPL +M+ R+ HI
Sbjct: 120 MTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHI 179
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
C E + L AL TLS++S GDLRRAI LQ AARL + L+ VSG
Sbjct: 180 CERESVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGAGHVDRATLLDVSG 231
>gi|384252312|gb|EIE25788.1| putative replication factor C 37 kDa subunit [Coccomyxa
subellipsoidea C-169]
Length = 329
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/231 (68%), Positives = 189/231 (81%), Gaps = 2/231 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWV+KYRPK V +VAHQEEVV L LE+AN PH+LFYGPPGTGKT+TALA+A QL+
Sbjct: 5 AQPWVDKYRPKSVNEVAHQEEVVHTLQKALESANLPHLLFYGPPGTGKTSTALAMARQLY 64
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
GPEL K+RV ELNASD+RGINVVR KIK+FAA +VG Q GYPCPP+K++ILDEAD+M
Sbjct: 65 GPELAKARVKELNASDERGINVVREKIKSFAATSVG--QPVPGYPCPPFKLLILDEADAM 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQNALRRTME +SKVTRF FICNY+SRIIEPLASRCAKFRF+PL +MS+R+ HIC
Sbjct: 123 TQDAQNALRRTMEAHSKVTRFIFICNYVSRIIEPLASRCAKFRFRPLHGGIMSARISHIC 182
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
NEEG+ L A+ TL +S GDLR+AIT LQ A RL G + + L+ VSG
Sbjct: 183 NEEGVQLQEGAMETLGKVSGGDLRKAITTLQSAVRLKGLQVEPQTLLDVSG 233
>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
Length = 329
Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 165/233 (70%), Positives = 186/233 (79%), Gaps = 3/233 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+SQPWVEKYRP+ + DVAHQEEVVR L LETAN PHMLFYGPPGTGKTT ALAI QL
Sbjct: 4 TSQPWVEKYRPRNINDVAHQEEVVRTLEKALETANMPHMLFYGPPGTGKTTCALAICRQL 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRVLELNASD+RGI+VVR KIK FA+ AVG G GYP PPYKI+ILDEADS
Sbjct: 64 YGPELIKSRVLELNASDERGISVVRNKIKGFASTAVGQGAP--GYPSPPYKILILDEADS 121
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQ+ALRRTMETYSKVTRFF +CNYISRIIEP+ASRCAKFRFKPL EVM R+ I
Sbjct: 122 MTNDAQSALRRTMETYSKVTRFFILCNYISRIIEPIASRCAKFRFKPLGHEVMGDRLKFI 181
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSG 278
EGL L S+ S GD+R+AIT LQ AARLFG+ +IT K++ +V+G
Sbjct: 182 ATAEGLTLGEGCYEACSTHSGGDMRKAITLLQSAARLFGTATITGKEITAVAG 234
>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 331
Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 162/233 (69%), Positives = 189/233 (81%), Gaps = 3/233 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
SS PWVEKYRP+++ DV+HQEEVVR L LETAN PHMLFYGPPGTGKTT ALAI QL
Sbjct: 5 SSVPWVEKYRPRKIGDVSHQEEVVRTLQKALETANMPHMLFYGPPGTGKTTCALAICRQL 64
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GP+L+KSRVLELNASD+RGI+VVR KIK FA+ AVG Q GYPCPPYKI+ILDEADS
Sbjct: 65 YGPDLFKSRVLELNASDERGISVVRNKIKGFASTAVG--QAVPGYPCPPYKILILDEADS 122
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQ+ALRRTMET+SKVTRFF +CNY+SRIIEP+ASRCAKFRFKPL EVMS R+ HI
Sbjct: 123 MTTDAQSALRRTMETHSKVTRFFILCNYVSRIIEPIASRCAKFRFKPLGSEVMSDRLKHI 182
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSG 278
EGL L + S GD+R+AIT LQ +ARLFG+ +T +D+I+V+G
Sbjct: 183 AEREGLTLGEGVYDAAAKHSGGDMRKAITLLQSSARLFGAKELTGEDIIAVAG 235
>gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
Length = 328
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/257 (67%), Positives = 201/257 (78%), Gaps = 12/257 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+QPWVEKYRPK V +VA+QEEVV LT LETAN PH+LFYGPPGTGKT+TALAIA QL
Sbjct: 2 STQPWVEKYRPKNVNEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPEL KSRV+ELNASD+RGI+VVR K+K+FAA AVG+ YPCPPYK++ILDEADS
Sbjct: 62 YGPELMKSRVMELNASDERGIHVVREKVKSFAAAAVGAPVPG--YPCPPYKLLILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYS+VTRF FICNY+SRIIEPLASRCAKFRFKPL VM+ R+ HI
Sbjct: 120 MTQDAQSALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPTVMAGRIEHI 179
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG-----YPT 281
C EG+ L AL LSS+S GDLRRAIT LQ AARL G ++ L+ VSG T
Sbjct: 180 CEREGVTLAPGALEALSSVSGGDLRRAITTLQSAARLGGGTVDKATLLDVSGRVPADVIT 239
Query: 282 G-----GSGGAFRGVQK 293
G + GAF G+Q+
Sbjct: 240 GLCNSCKAPGAFAGLQR 256
>gi|290981375|ref|XP_002673406.1| predicted protein [Naegleria gruberi]
gi|284086989|gb|EFC40662.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 153/235 (65%), Positives = 184/235 (78%), Gaps = 2/235 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S QPW EKYRPK V DV HQEEVV L +LE N PH+LFYGPPG GKT+TA AIA Q
Sbjct: 4 KSQQPWTEKYRPKTVDDVVHQEEVVSALKKSLEVGNLPHLLFYGPPGNGKTSTATAIAKQ 63
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RGGYPCPPYKIIILDEA 164
LFGPELYK+RVLELNASD+RGINV+RTK+KTFA AV +G YPCPP+KIIILDEA
Sbjct: 64 LFGPELYKTRVLELNASDERGINVIRTKVKTFAQTAVSENPTGKGKYPCPPFKIIILDEA 123
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY+SRII+P+ SRCAKFRFKPL ++ R+
Sbjct: 124 DSMTVDAQSALRRTMETYSNVTRFCLICNYVSRIIDPITSRCAKFRFKPLEYSLLKERLQ 183
Query: 225 HICNEEGLNL-DAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+I N+EG+ L D + L T+ S+GDLR+AIT LQ A+R+FG++I+ + +SG
Sbjct: 184 YIANQEGITLKDEKVLDTIVGHSEGDLRKAITTLQSASRMFGNAISQNHIAEISG 238
>gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
Length = 342
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/233 (63%), Positives = 183/233 (78%), Gaps = 2/233 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK V+DVA QE+VVRVL LET N PH LFYGPPGTGKTT ALAIA QL
Sbjct: 14 AHQPWVEKYRPKTVRDVASQEQVVRVLEQALETGNMPHCLFYGPPGTGKTTCALAIAKQL 73
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+GPELYK RV ELNASD+RGI+VVR K+KTFA++AVG+ GYP PPYKI+ILDEAD+
Sbjct: 74 YGPELYKQRVKELNASDERGISVVRDKVKTFASLAVGAPA--PGYPSPPYKILILDEADA 131
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQ+A+RR METYSKVTRFF +CNY+++II+P+ SRCAKFRF+PL+ E M++R+ +I
Sbjct: 132 MTTDAQSAMRRMMETYSKVTRFFLLCNYVTKIIDPITSRCAKFRFQPLALETMTTRLKYI 191
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279
+E L L + S S GD+R+AIT LQ AARLF + + ++ V+GY
Sbjct: 192 AEQESLELSDDVFPACSKHSGGDMRKAITLLQSAARLFSGKVDAAGIVEVAGY 244
>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 148/234 (63%), Positives = 184/234 (78%), Gaps = 2/234 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ VKDVA QE++V VL N L+T N PH LFYGPPGTGKTTTALAIA +
Sbjct: 13 EAHAPWVEKYRPRVVKDVASQEQIVGVLENALKTGNMPHCLFYGPPGTGKTTTALAIAKE 72
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPELYK RV ELNASD+RGI+VVR KIKTFA+ AVG+ GYP PPYKI+ILDEAD
Sbjct: 73 LYGPELYKQRVKELNASDERGISVVRNKIKTFASQAVGAPAP--GYPSPPYKILILDEAD 130
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQ+ALRR METYSKVTRFF +CNY+++II+P+ASRCAKFRF PL++E M +R+
Sbjct: 131 AMTGDAQSALRRMMETYSKVTRFFLLCNYVTKIIDPIASRCAKFRFSPLAQETMGARLKF 190
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279
I +EGL + + + S S GD+R+AIT LQ AARLF I+ ++ V+G+
Sbjct: 191 IGEQEGLEMSDDVFAMCSKHSGGDMRKAITLLQSAARLFAGKISGASIVEVAGH 244
>gi|358054157|dbj|GAA99693.1| hypothetical protein E5Q_06396 [Mixia osmundae IAM 14324]
Length = 446
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 151/261 (57%), Positives = 189/261 (72%), Gaps = 11/261 (4%)
Query: 14 NKSPNFTQKFSTTQSSP---------EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA 64
++SP T+K S ++P +KS V+RK + +QPWVEKYRPK + D++
Sbjct: 49 SQSPTATRKPSKKVTAPQGPMNVAIIDKSNGAVERKRPVLAAQAQPWVEKYRPKTIDDIS 108
Query: 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124
QE VRVL +LE AN PHMLFYGPPGTGKT+T LA+A QLFGPE +++RVLELNASD+
Sbjct: 109 AQENTVRVLRKSLENANLPHMLFYGPPGTGKTSTILALAKQLFGPEAFRTRVLELNASDE 168
Query: 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184
RGI VVR KIK FA +A+ G YPCPPYKIIILDEADSMT+DAQ+ALRR ME YSK
Sbjct: 169 RGITVVREKIKNFAKIAISPAV--GDYPCPPYKIIILDEADSMTQDAQSALRRIMENYSK 226
Query: 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244
+TRF ICNY++RIIEP+ SRC+KFRFKPL R+ ++C +E + E++ L
Sbjct: 227 ITRFCLICNYVTRIIEPITSRCSKFRFKPLDTTNTQKRLEYVCQKEEVQCGEESVQALIR 286
Query: 245 ISQGDLRRAITYLQGAARLFG 265
S+GDLRRAITYLQ A+RL+G
Sbjct: 287 CSEGDLRRAITYLQSASRLYG 307
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 306 bits (783), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 139/231 (60%), Positives = 176/231 (76%), Gaps = 1/231 (0%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK V DVAHQ+EV L + T PH+LFYGPPGTGKT+TALA+A LFG
Sbjct: 28 QPWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTALALARTLFG 87
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P+ Y+ R+LELNASD+RGI VVR KIKTFA VAVG + GYPCPP+K+IILDEAD+MT
Sbjct: 88 PDTYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEADTMT 147
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTMETYS VTRF ICNY++RIIEPLASRCAKFRF L + M R+ +I
Sbjct: 148 PDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISR 207
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278
EE + + A+ L + +S GD+R+A+T +Q A++ + G+ +T + L+ ++G
Sbjct: 208 EEDVKIAADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAG 258
>gi|126338206|ref|XP_001370165.1| PREDICTED: replication factor C subunit 4 [Monodelphis domestica]
Length = 366
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 193/267 (72%), Gaps = 9/267 (3%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
S+P+ S E R+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LF
Sbjct: 24 SAPQGSSAE-SRRAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLF 77
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
YGPPGTGKT+T LA A +L+GPEL++ RVLELNASD+RGI V+R K+KTFA + V SG R
Sbjct: 78 YGPPGTGKTSTILAAARELYGPELFRQRVLELNASDERGIQVIREKVKTFAQLTV-SGSR 136
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+
Sbjct: 137 SDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCS 196
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GS 266
KFRFKPLS+++ R+L I +E + ++ E ++ L +S+GDLR+AIT+LQ A RL G
Sbjct: 197 KFRFKPLSDKIQHQRLLDISEKENVKINNEGIAYLVKVSEGDLRKAITFLQSATRLTGGQ 256
Query: 267 SITSKDLISVSG-YPTGGSGGAFRGVQ 292
+T K + ++G PTG G F Q
Sbjct: 257 EVTEKVITEIAGVVPTGTITGIFYACQ 283
>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
Length = 355
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 146/234 (62%), Positives = 179/234 (76%), Gaps = 2/234 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q S PWVEKYRPK +++VA QEEVV VL T+E A+ P++LFYGPPGTGKT+T LA A +
Sbjct: 29 QKSVPWVEKYRPKCMEEVAFQEEVVAVLKKTIEGADLPNLLFYGPPGTGKTSTILAAARE 88
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPELY+ RVLELNASD+RGI VVR K+K FA + V +G R G PCPP+KIIILDEAD
Sbjct: 89 LYGPELYRQRVLELNASDERGIQVVREKVKRFAQLTV-AGHRTDGKPCPPFKIIILDEAD 147
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRTME S+ TRF ICNYISRIIEPL SRC+KFRFKPL+ +V R+L
Sbjct: 148 SMTNAAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQVQEERLLD 207
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSG 278
IC++E L E ++ L +S+GDLR+AIT+LQ AARL + IT +I ++G
Sbjct: 208 ICDKENLKYSKEGIAALVKVSEGDLRKAITFLQSAARLNTDNEITESAVIEIAG 261
>gi|412990864|emb|CCO18236.1| predicted protein [Bathycoccus prasinos]
Length = 350
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 146/230 (63%), Positives = 172/230 (74%), Gaps = 2/230 (0%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWV+KYRPK+V DVA+Q EVV L +ET N PHMLFYGPPGTGKTT ALAI QL+G
Sbjct: 24 EPWVDKYRPKKVSDVAYQTEVVSALEKAMETHNLPHMLFYGPPGTGKTTCALAICKQLYG 83
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
PEL K RVLELNASD+RGI+VVR KIK+FA+ VG G GYPCPPYKI+ILDEADSMT
Sbjct: 84 PELGKKRVLELNASDERGISVVRGKIKSFASTTVGEGVP--GYPCPPYKILILDEADSMT 141
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRR METYS+VTRFF +CNY+S+II+P++SRCAKFRFK L M R+ I
Sbjct: 142 NDAQSALRRMMETYSRVTRFFILCNYVSKIIDPISSRCAKFRFKSLDGGTMHERINFIAK 201
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E L L L L +S GD+R+AIT LQ AA LFG +T + V+G
Sbjct: 202 GENLQLAEGTLQALEHVSAGDMRKAITLLQSAASLFGPELTGDRIREVAG 251
>gi|323507744|emb|CBQ67615.1| probable RFC2-DNA replication factor C, 41 KD subunit [Sporisorium
reilianum SRZ2]
Length = 385
Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/267 (56%), Positives = 194/267 (72%), Gaps = 12/267 (4%)
Query: 19 FTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE 78
F Q+ S ++ + ++ K K+A + +PWVEKYRPK + DVA QE V VL TL
Sbjct: 2 FLQQASKAHNAGQAAQ---KEKLAKEKAAMRPWVEKYRPKTIDDVAAQEHTVAVLKKTLM 58
Query: 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+ N PHMLFYGPPGTGKT+T LA+A QLFGPEL K+RVLELNASD+RGI+VVR KIK FA
Sbjct: 59 SNNLPHMLFYGPPGTGKTSTILALARQLFGPELMKTRVLELNASDERGISVVREKIKNFA 118
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+AV + + G+PCPP+KIIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++RI
Sbjct: 119 KLAVTNPKE--GFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRI 176
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYL 257
IEPLASRC+KFRF+ L +R+ I + E ++ D+ L TL S S GDLRRAITYL
Sbjct: 177 IEPLASRCSKFRFRSLDTSSTKTRLEMIASAESVSFQDSTVLDTLISTSDGDLRRAITYL 236
Query: 258 QGAARLFG------SSITSKDLISVSG 278
Q A+RL SS+TS+ ++ ++G
Sbjct: 237 QSASRLHSIAGDEKSSVTSESIVEIAG 263
>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
Length = 347
Score = 303 bits (777), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 145/241 (60%), Positives = 185/241 (76%), Gaps = 5/241 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
RK ++ PWVEKYRP+ V +VA Q+EVV VL +L + + PH+LFYGPPGTGKT+T
Sbjct: 13 RKRETATSTTTPWVEKYRPRTVDEVAFQDEVVAVLKKSLTSNDFPHLLFYGPPGTGKTST 72
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LAIA Q+FGPEL K+R+LELNASD+RGI+VVR K+KT S + + GYPCPP+KI
Sbjct: 73 ILAIARQMFGPELMKTRILELNASDERGISVVREKVKTLHQ----SLRLKWGYPCPPFKI 128
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
IILDEADSMT DAQ+ALRR METYSK TRF ICNY+SRIIEPLASRCAKFRFKPL +
Sbjct: 129 IILDEADSMTADAQSALRRMMETYSKTTRFCLICNYVSRIIEPLASRCAKFRFKPLDAGI 188
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
++ ++ I ++EGL +DA A++ L++ S GD+RRAIT +Q RL GS IT+ D+++ +
Sbjct: 189 LTEKLTAIGDKEGLQIDASAINQLTAASGGDMRRAITLMQCCFRLNGSDPITADDVVAAA 248
Query: 278 G 278
G
Sbjct: 249 G 249
>gi|354492255|ref|XP_003508264.1| PREDICTED: replication factor C subunit 4 [Cricetulus griseus]
gi|344245879|gb|EGW01983.1| Replication factor C subunit 4 [Cricetulus griseus]
Length = 362
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 154/273 (56%), Positives = 193/273 (70%), Gaps = 9/273 (3%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
+F+ ++ P S E K K+ PV PWVEKYRPK V +VA QEEVV VL +LE A+
Sbjct: 15 QFTKDRAIPTGSSGETK-KVKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD 68
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA +
Sbjct: 69 LPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLT 128
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEP
Sbjct: 129 V-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEP 187
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
L SRC+KFRFKPLS+++ R+L I +E + + E ++ L +S+GDLR+AIT+LQ A
Sbjct: 188 LTSRCSKFRFKPLSDKIQRERLLDIAEKENVKISHEVIAYLVKVSEGDLRKAITFLQSAT 247
Query: 262 RLFGSSITSKDLIS-VSGY-PTGGSGGAFRGVQ 292
RL G +D+I+ ++G P G F Q
Sbjct: 248 RLTGGKEVMRDVITDIAGVIPATTIDGIFTACQ 280
>gi|57109940|ref|XP_535837.1| PREDICTED: replication factor C subunit 4 [Canis lupus familiaris]
Length = 363
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 151/256 (58%), Positives = 185/256 (72%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 32 KKTKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 86
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 87 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 145
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 146 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 205
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 206 QQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 265
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G G F Q
Sbjct: 266 GVIPAGTIDGIFAACQ 281
>gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
Length = 360
Score = 302 bits (774), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 140/230 (60%), Positives = 178/230 (77%), Gaps = 1/230 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA + +
Sbjct: 34 QKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAASRE 93
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPEL++ RVLELNASD+RGI VVR K+K FA + VG G R G PCPP+KI+ILDEAD
Sbjct: 94 LYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVG-GTRSDGKPCPPFKIVILDEAD 152
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPL++++ + R+L
Sbjct: 153 SMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQRLLS 212
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
IC +E + + EA+S L +S+GDLR+AIT+LQ A RL G ++++++
Sbjct: 213 ICEKENVKITNEAISCLVEVSEGDLRKAITFLQSATRLTGGKEITEEIVT 262
>gi|388852328|emb|CCF53943.1| probable RFC2-DNA replication factor C, 41 KD subunit [Ustilago
hordei]
Length = 383
Score = 302 bits (774), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 151/267 (56%), Positives = 193/267 (72%), Gaps = 12/267 (4%)
Query: 19 FTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE 78
F Q+ S S+ + ++ K K+A +S+PWVEKYRPK + DVA QE V VL TL
Sbjct: 2 FLQQASKAHSANQAAQ---KEKLAREKATSRPWVEKYRPKTIDDVAAQEHTVAVLKKTLM 58
Query: 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+ N PHMLFYGPPGTGKT+T LA+A QLFGPEL K+RVLELNASD+RGI VVR KIK FA
Sbjct: 59 SNNLPHMLFYGPPGTGKTSTILALARQLFGPELVKTRVLELNASDERGITVVREKIKNFA 118
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+AV + + G+PCPP+KIIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++RI
Sbjct: 119 KLAVTNPKE--GFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRI 176
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYL 257
IEPLASRC+KFRF+ L +R+ I E ++ D+ L TL + S GDLRRAITYL
Sbjct: 177 IEPLASRCSKFRFRSLDTCSTKTRLEMIAGAESVSFQDSSVLDTLITTSDGDLRRAITYL 236
Query: 258 QGAARLFG------SSITSKDLISVSG 278
Q A+RL +S+TS+ ++ ++G
Sbjct: 237 QSASRLHSIAGDDKTSVTSESIVEIAG 263
>gi|351709587|gb|EHB12506.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 364
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 185/256 (72%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++SRVLELNASD+RGI VVR K+K FA +AV SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRSRVLELNASDERGIQVVREKVKNFAQLAV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY++RIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVTRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G + K + ++
Sbjct: 207 QQQRLLDIAEKENVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVIPAETIDGVFAACQ 282
>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
leucogenys]
Length = 363
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 151/256 (58%), Positives = 183/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
RK PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 RKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVIPAEKIDGVFAACQ 282
>gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum]
Length = 372
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 140/224 (62%), Positives = 171/224 (76%), Gaps = 2/224 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 35 PWVEKYRPKNLNDVSAQDHTISVLKRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGP 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
EL KSRVLELNASD+RGI++VR K+K FA + V S + YPCPPYKIIILDEADSM
Sbjct: 95 ELMKSRVLELNASDERGISIVREKVKNFARITVSTASSTQSSNYPCPPYKIIILDEADSM 154
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFKPL EE R+ I
Sbjct: 155 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEENAKLRLEEIA 214
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK 271
E + + + L +S+GDLR+AITYLQ AARL I K
Sbjct: 215 KMENVEYEDGVIDALIKVSEGDLRKAITYLQSAARLHNPIIRPK 258
>gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus]
gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus]
Length = 364
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/264 (56%), Positives = 187/264 (70%), Gaps = 16/264 (6%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI---- 274
R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D+I
Sbjct: 207 QQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIA 266
Query: 275 ------SVSGYPTGGSGGAFRGVQ 292
++ G T G+F ++
Sbjct: 267 GVIPAATIEGIVTACHSGSFDKLE 290
>gi|336272567|ref|XP_003351040.1| hypothetical protein SMAC_04344 [Sordaria macrospora k-hell]
gi|380090807|emb|CCC04977.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 387
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/262 (57%), Positives = 186/262 (70%), Gaps = 16/262 (6%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
S+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ N PHMLF
Sbjct: 19 SNPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQATNLPHMLF 70
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SG 145
YGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 71 YGPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSA 130
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASR
Sbjct: 131 AYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASR 190
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
C+KFRFK L + R+ I EG+ L+ A+ L S+GDLR+AITYLQ AARL G
Sbjct: 191 CSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLVG 250
Query: 266 S-SITSKDLISVSGYPTGGSGG 286
+ + T+KD G G GG
Sbjct: 251 AVAATAKD-----GEQKEGEGG 267
>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/216 (66%), Positives = 169/216 (78%), Gaps = 2/216 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V VL +L +AN PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 21 PWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGP 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+L KSRVLELNASD+RGI +VR K+K FA + V S + YPCPPYK+IILDEADSM
Sbjct: 81 DLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILDEADSM 140
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRRTMETYS VTRF ICNYI+RII+PLASRC+KFRFKPL+ + R+ +I
Sbjct: 141 TYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKFRFKPLANDNAVQRLRYIV 200
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+E LN+D + S L +IS GDLRRAITYLQ AARL
Sbjct: 201 QQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARL 236
>gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis]
gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis]
Length = 357
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/249 (58%), Positives = 188/249 (75%), Gaps = 4/249 (1%)
Query: 33 SEDEVKRKMAPVL--QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
S +VK+ +A L Q S PWVEKYRPK V DVA QEEVV VL +LE A+ P++LFYGP
Sbjct: 13 SSSKVKQGVAGSLGKQKSSPWVEKYRPKCVDDVAQQEEVVMVLKKSLEGADLPNLLFYGP 72
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA+A +L+G E+ K RVLELNASD+RGI V+R K+KTF+ ++ S R G
Sbjct: 73 PGTGKTSTILAVARELYGHEMLKQRVLELNASDERGIQVIRDKVKTFSQLS-ASASRPDG 131
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
PCPP+K++ILDEADSMT AQ ALRRTME +K TRF ICNY+SRIIEPL SRC+KFR
Sbjct: 132 KPCPPFKLVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICNYVSRIIEPLTSRCSKFR 191
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-IT 269
FKPLS E++ R+ IC +E +N + +A+ + IS+GD+R+AIT+LQ A RL G S I
Sbjct: 192 FKPLSSEILERRLKEICVKEEVNCEDKAIDEVIKISEGDMRKAITFLQSAHRLKGDSGIV 251
Query: 270 SKDLISVSG 278
++D+I ++G
Sbjct: 252 AEDIIEIAG 260
>gi|344282143|ref|XP_003412834.1| PREDICTED: replication factor C subunit 4 [Loxodonta africana]
Length = 373
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/256 (58%), Positives = 187/256 (73%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK+V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKRVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++SRVLELNASD+RGI VVR K+K+FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRSRVLELNASDERGIQVVREKVKSFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKT 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVS 277
R+L I +E + + E ++ L ++S+GDLR+AIT+LQ A RL G +T K ++ ++
Sbjct: 207 QQQRLLDIAEKENVKITNEGIAYLINVSEGDLRKAITFLQSATRLTAGKEVTEKVIMDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVIPAETIDGIFAVCQ 282
>gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis]
gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis]
gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis]
Length = 363
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/234 (61%), Positives = 180/234 (76%), Gaps = 2/234 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK V +VA Q+EVV VL +L+ A+ P++LFYGPPGTGKT+T LA + +
Sbjct: 34 QKPIPWVEKYRPKCVDEVAFQDEVVAVLKKSLQGADLPNLLFYGPPGTGKTSTILAASRE 93
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPEL++ RVLELNASD+RGI VVR K+K FA + VG G R G PCPP+KIIILDEAD
Sbjct: 94 LYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVG-GTRSDGKPCPPFKIIILDEAD 152
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPL++++ + R+L
Sbjct: 153 SMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQRLLS 212
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278
IC +E + + EA+S L +S+GDLR+AIT+LQ AARL G IT + + ++G
Sbjct: 213 ICEKENVQITNEAISCLVEVSEGDLRKAITFLQSAARLTRGKEITEEIVTEIAG 266
>gi|393220481|gb|EJD05967.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 370
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 182/240 (75%), Gaps = 12/240 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE +V VL TL + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 22 QPWVEKYRPKTIDDVSSQEHIVAVLQKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +K+RVLELNASD+RGI +VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 82 PDNFKNRVLELNASDERGITIVREKIKNFARQTPRAQAVASDGK--TYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF+PL + R+
Sbjct: 140 ADSMTHDAQSALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFRPLDDSATKLRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
HI + E + + E +STL ++S GDLRR+ITYLQ A+RL S+ ITS+D+ ++G
Sbjct: 200 QHIADAERVPVIPEVVSTLINVSGGDLRRSITYLQSASRLSSSTDPPTEITSQDIQEIAG 259
>gi|260800650|ref|XP_002595211.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
gi|229280455|gb|EEN51223.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
Length = 364
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 144/234 (61%), Positives = 179/234 (76%), Gaps = 2/234 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP+ V DVA QEEVV VL +L+ A+ P++L YGPPGTGKT+T LA A +
Sbjct: 34 QPNAPWVEKYRPRTVDDVAFQEEVVAVLKKSLQGADLPNLLLYGPPGTGKTSTILAAARE 93
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG +L K RVLELNASD+RGI VVR K+KTF+ ++ SG R G PCPP+KI+ILDEAD
Sbjct: 94 LFGADLMKQRVLELNASDERGIQVVRDKVKTFSQLS-ASGTRPDGRPCPPFKIVILDEAD 152
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ +LRRTME +K TRF ICNYISRIIEPLASRCAKFRFKPLS +++ R+ H
Sbjct: 153 SMTNPAQASLRRTMEKETKTTRFCLICNYISRIIEPLASRCAKFRFKPLSSDILQKRLRH 212
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG-SSITSKDLISVSG 278
I E +N + +A++ L S+GDLR+AITYLQ A RL G +IT KD++ ++G
Sbjct: 213 IAEAEKVNAEDKAITALIDTSEGDLRKAITYLQSAHRLKGEDAITEKDILEITG 266
>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
troglodytes]
gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
troglodytes]
gi|410223264|gb|JAA08851.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410291994|gb|JAA24597.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410332695|gb|JAA35294.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/256 (58%), Positives = 183/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVIPAEKIDGVFAACQ 282
>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
construct]
gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/256 (58%), Positives = 183/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVIPAEKIDGVFAACQ 282
>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
gi|1703052|sp|P35249.2|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
subunit; AltName: Full=Activator 1 subunit 4; AltName:
Full=Replication factor C 37 kDa subunit; Short=RF-C 37
kDa subunit; Short=RFC37
gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
Length = 363
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/256 (58%), Positives = 183/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVIPAEKIDGVFAACQ 282
>gi|348582722|ref|XP_003477125.1| PREDICTED: replication factor C subunit 4-like [Cavia porcellus]
Length = 363
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/241 (60%), Positives = 179/241 (74%), Gaps = 3/241 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 38 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+L++SRVLELNASD+RGI VVR K+K FA +AV SG R G PCPP+KI+ILDEADSMT
Sbjct: 98 DLFRSRVLELNASDERGIQVVREKVKNFAQLAV-SGSRSDGKPCPPFKIVILDEADSMTS 156
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I +
Sbjct: 157 AAQAALRRTMEKESKATRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEK 216
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGY-PTGGSGGA 287
E + + E + L +S+GDLR+AIT+LQ A RL G + K + ++G P GG
Sbjct: 217 ENVKISNEGIEYLVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITDIAGVIPAETIGGI 276
Query: 288 F 288
F
Sbjct: 277 F 277
>gi|242822833|ref|XP_002487968.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712889|gb|EED12314.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 393
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 144/253 (56%), Positives = 178/253 (70%), Gaps = 14/253 (5%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
S+ Q + E +E++ + QPWVEKYRPK + DVA Q+ VL TL+ +N P
Sbjct: 23 SSKQKTSENAEEQARL---------QPWVEKYRPKSLDDVAAQDHTTAVLQRTLQASNLP 73
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
HMLFYGPPGTGKT+T LA++ LFGP LY++R+LELNASD+RGIN+VR KIK FA +
Sbjct: 74 HMLFYGPPGTGKTSTILALSKSLFGPALYRTRILELNASDERGINIVREKIKDFARTQLS 133
Query: 144 -----SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +CNY++RI
Sbjct: 134 HPSGLDAAYKAKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRI 193
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
IEPLASRC+KFRFK L R+ I EGL LD + TL S+GDLRRAITYLQ
Sbjct: 194 IEPLASRCSKFRFKALDGVSAGDRINEIAQAEGLTLDDGVVDTLIRCSEGDLRRAITYLQ 253
Query: 259 GAARLFGSSITSK 271
AARL G++ T K
Sbjct: 254 SAARLVGATSTQK 266
>gi|425778430|gb|EKV16557.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum PHI26]
Length = 780
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 168/224 (75%), Gaps = 5/224 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 423 QPWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 482
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA + R YPCPP+KIIILDE
Sbjct: 483 PALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDE 542
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTMETYS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 543 ADSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRI 602
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+I +EGL L+ + TL +GDLRRAITYLQ AARL G++
Sbjct: 603 SNIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSAARLVGAT 646
>gi|453082922|gb|EMF10969.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 406
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/226 (62%), Positives = 175/226 (77%), Gaps = 4/226 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP+ + D+A Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 35 QPWVEKYRPRSLDDIAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG----SGQRRGGYPCPPYKIIILDEA 164
PEL KSRVLELNASD+RGI++VR K+K FA + + + + R YPCPPYKIIILDEA
Sbjct: 95 PELVKSRVLELNASDERGISIVREKVKDFARMQLSNPPHAEEYRKKYPCPPYKIIILDEA 154
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT+DAQ+ALRRTMETYSK+TRF +CNY++RII+PLASRC+KFRFK L E R+
Sbjct: 155 DSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEGNAGKRIE 214
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
I E + LD + TL S+GDLR+AIT+LQ AARL G++ T+
Sbjct: 215 DIARLENVKLDEGVVETLLRCSEGDLRKAITFLQSAARLVGATSTA 260
>gi|425784288|gb|EKV22076.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum Pd1]
Length = 780
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 168/224 (75%), Gaps = 5/224 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 423 QPWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 482
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA + R YPCPP+KIIILDE
Sbjct: 483 PALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDE 542
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTMETYS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 543 ADSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRI 602
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+I +EGL L+ + TL +GDLRRAITYLQ AARL G++
Sbjct: 603 SNIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSAARLVGAT 646
>gi|196003908|ref|XP_002111821.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
gi|190585720|gb|EDV25788.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
Length = 373
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 143/232 (61%), Positives = 177/232 (76%), Gaps = 2/232 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP+ + DVAHQ+EVV VL L+ A+ P+ LFYGPPGTGKT+T LA A L+
Sbjct: 33 SVPWVEKYRPRSIDDVAHQDEVVSVLRKCLQGADLPNFLFYGPPGTGKTSTILAAARHLY 92
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G ++Y+SRVLELNASDDRGI V+R KIKTFA ++V + QR G PCPP+KIIILDEADSM
Sbjct: 93 GSDIYRSRVLELNASDDRGIQVIREKIKTFAQLSVAN-QRPDGTPCPPFKIIILDEADSM 151
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRTME YSK TRF ICNY+SRIIEPL SRC+KFRFKPL E ++ + I
Sbjct: 152 THAAQAALRRTMEKYSKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLPENILLHHLSAIS 211
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSG 278
+E L+ D +AL + SIS+GD+R+AITY+Q +RL+ ITS+ +I +G
Sbjct: 212 EKENLDCDKQALRNIISISEGDMRKAITYIQSVSRLYNDKRITSERIIESAG 263
>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pongo abelii]
gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pongo abelii]
gi|397470118|ref|XP_003806680.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan paniscus]
gi|397470120|ref|XP_003806681.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan paniscus]
gi|426343233|ref|XP_004038219.1| PREDICTED: replication factor C subunit 4 isoform 1 [Gorilla
gorilla gorilla]
gi|426343235|ref|XP_004038220.1| PREDICTED: replication factor C subunit 4 isoform 2 [Gorilla
gorilla gorilla]
gi|410253804|gb|JAA14869.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/256 (58%), Positives = 183/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVIPAEKIDGVFAACQ 282
>gi|448098395|ref|XP_004198917.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359380339|emb|CCE82580.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 140/216 (64%), Positives = 172/216 (79%), Gaps = 2/216 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +VA QE V++L TLE+AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 19 PWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGP 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
L+KSRVLELNASD+RGI++VR K+K FA +AV + + YPCPPYK+IILDEADSM
Sbjct: 79 RLFKSRVLELNASDERGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILDEADSM 138
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRT+E YS VTRF ICNYI+RII+PL+SRC+KFRF L+ E SR+ +I
Sbjct: 139 TNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNENALSRIKYIV 198
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+E LN+D + TL SIS GDLR+AIT+LQ A+RL
Sbjct: 199 EKENLNVDEDVPETLLSISNGDLRKAITFLQSASRL 234
>gi|389749254|gb|EIM90431.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 379
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/240 (60%), Positives = 179/240 (74%), Gaps = 12/240 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE +V VL TL + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 25 QPWVEKYRPKTIEDVSAQEHIVAVLEKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI +VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFRSRVLELNASDERGIAIVREKIKNFARQTPRAQAVSSDGK--AYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+ +TRF +CNY++RIIEPLASRC+KFRFKPL + ++R+
Sbjct: 143 ADSMTQDAQAALRRIMETYAHITRFCLVCNYVTRIIEPLASRCSKFRFKPLDDSSSTNRL 202
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
HI E L + + S L S S GDLRRAITYLQ AARL +S I+ +D+ ++G
Sbjct: 203 EHIALSEQLRVKPDVFSALISTSGGDLRRAITYLQSAARLSAASETETTISPRDIQEIAG 262
>gi|443896109|dbj|GAC73453.1| replication factor C, subunit RFC4 [Pseudozyma antarctica T-34]
Length = 383
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 148/267 (55%), Positives = 189/267 (70%), Gaps = 12/267 (4%)
Query: 19 FTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE 78
F Q+ + ++ + ++ K K+A + +PWVEKYRPK + +V QE V VL TL
Sbjct: 2 FLQQATKAHNASQAAQ---KEKLAKEKAARRPWVEKYRPKTIDEVTAQEHTVAVLKKTLM 58
Query: 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+ N PHMLFYGPPGTGKT+T LA+A QLFGPEL K+RVLELNASD+RGI VVR KIK FA
Sbjct: 59 SNNLPHMLFYGPPGTGKTSTILALARQLFGPELMKTRVLELNASDERGITVVREKIKNFA 118
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+AV + + G+PCPP+KIIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++RI
Sbjct: 119 KLAVTNPKE--GFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRI 176
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYL 257
IEPLASRC+KFRF+ L +R+ I N E + D E L TL S GDLRRAITYL
Sbjct: 177 IEPLASRCSKFRFRSLDTSSTKARLEMIANTEAVTFEDGEVLDTLIGTSDGDLRRAITYL 236
Query: 258 QGAARLFG------SSITSKDLISVSG 278
Q A+RL S++TS ++ ++G
Sbjct: 237 QSASRLHSVAGDDKSAVTSASIVEIAG 263
>gi|388454302|ref|NP_001253606.1| replication factor C subunit 4 [Macaca mulatta]
gi|355560107|gb|EHH16835.1| hypothetical protein EGK_12194 [Macaca mulatta]
gi|380815324|gb|AFE79536.1| replication factor C subunit 4 [Macaca mulatta]
gi|383420509|gb|AFH33468.1| replication factor C subunit 4 [Macaca mulatta]
Length = 363
Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 183/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT + + ++
Sbjct: 207 QQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVIPAEKIDGVFAACQ 282
>gi|440891701|gb|ELR45251.1| Replication factor C subunit 4 [Bos grunniens mutus]
Length = 364
Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 184/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIA 266
Query: 278 G-YPTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVVPAKTIDGVFAACQ 282
>gi|350591807|ref|XP_003483338.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa]
Length = 364
Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 184/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G PT G Q
Sbjct: 267 GVIPTETIDGVLAACQ 282
>gi|50424927|ref|XP_461055.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
gi|49656724|emb|CAG89431.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
Length = 368
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 143/220 (65%), Positives = 171/220 (77%), Gaps = 3/220 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V++L TLE+AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 24 PWVEKYRPKNLDDVASQDHAVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + S + YPCPPYKIIILDEADSM
Sbjct: 84 HLYKSRVLELNASDERGISIVRQKIKNFARLTISNPSKEDLENYPCPPYKIIILDEADSM 143
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME YS VTRF ICNYI+RII+PLASRC+KFRF+ L+ +R+ +I
Sbjct: 144 TNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSKFRFRLLNNSNALNRLKYIV 203
Query: 228 NEEGLNLDAE-ALSTLSSISQGDLRRAITYLQGAARLFGS 266
+E + LD E L + +IS GDLR+AITYLQ AARL S
Sbjct: 204 GQEEIALDNEDVLEEVLNISNGDLRKAITYLQSAARLHAS 243
>gi|426217726|ref|XP_004003103.1| PREDICTED: replication factor C subunit 4 isoform 1 [Ovis aries]
Length = 364
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 184/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIA 266
Query: 278 G-YPTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVVPAKTIDGVFAACQ 282
>gi|402078075|gb|EJT73424.1| replication factor C subunit 2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 384
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 141/232 (60%), Positives = 177/232 (76%), Gaps = 3/232 (1%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
+ K P +QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+
Sbjct: 23 QEKQNPEATRAQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTS 82
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS---GQRRGGYPCP 154
T LA+A +LFGPEL +SRVLELNASD+RGI++VR K+K FA + + + G R YPCP
Sbjct: 83 TVLALAKELFGPELMRSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYDRSKYPCP 142
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
P+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L
Sbjct: 143 PFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSL 202
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+ +R+ HI +E + L+ A+ L S+GDLR+AIT+LQ AARL G+
Sbjct: 203 DQGNAKARLEHIAEKECVALEPGAVDALIKSSEGDLRKAITFLQSAARLVGA 254
>gi|390594192|gb|EIN03605.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 364
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 147/241 (60%), Positives = 180/241 (74%), Gaps = 12/241 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK ++DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLF
Sbjct: 26 NQPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLF 85
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILD 162
GP+ ++SRVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILD
Sbjct: 86 GPDNFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSSDGK--TYPCPPYKIIILD 143
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT+DAQ ALRR ME Y+++TRF +CNY++RIIEPLASRC+KFRFKPL SSR
Sbjct: 144 EADSMTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPTSTSSR 203
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVS 277
+ H+ + E + + L TL S SQGDLRR+ITYLQ A+RL S+ IT D+ ++
Sbjct: 204 LQHVADAERVPVTPAVLDTLVSASQGDLRRSITYLQSASRLSASTDPPIPITPTDIQEIA 263
Query: 278 G 278
G
Sbjct: 264 G 264
>gi|71003365|ref|XP_756363.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
gi|46095800|gb|EAK81033.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
Length = 384
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 147/248 (59%), Positives = 184/248 (74%), Gaps = 9/248 (3%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K K+A +++PWVEKYRPK + +VA QE V VL TL + N PHMLFYGPPGTGKT+
Sbjct: 18 KEKLAKEKAANRPWVEKYRPKTIDEVAAQEHTVAVLKKTLLSNNLPHMLFYGPPGTGKTS 77
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
T LA+A QLFGPEL K+RVLELNASD+RGI VVR KIK FA +AV + + G+PCPP+K
Sbjct: 78 TILALARQLFGPELMKTRVLELNASDERGITVVREKIKNFAKLAVTNPKE--GFPCPPFK 135
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
IIILDEADSMT+DAQ+ALRR ME YS++TRF +CNY++RIIEPLASRC+KFRF+ L
Sbjct: 136 IIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTS 195
Query: 218 VMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYLQGAARLFG------SSITS 270
+R+ I + E + D+ L TL S S GDLRRAITYLQ A+RL S+ITS
Sbjct: 196 STKARLEMIASAESVAFRDSGVLDTLISTSDGDLRRAITYLQSASRLHSLTGEDKSAITS 255
Query: 271 KDLISVSG 278
+ ++ ++G
Sbjct: 256 ESIVEIAG 263
>gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda
melanoleuca]
gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca]
Length = 363
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 184/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V ++A QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 32 KKTKPV-----PWVEKYRPKCVDEIAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 86
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 87 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 145
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 146 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 205
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 206 QQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 265
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 266 GVIPAQTIDGIFAACQ 281
>gi|410970795|ref|XP_003991862.1| PREDICTED: replication factor C subunit 4 [Felis catus]
Length = 362
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 150/256 (58%), Positives = 184/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 86 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 204
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 205 QQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 264
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 265 GVIPAETIDGLFAACQ 280
>gi|355784873|gb|EHH65724.1| hypothetical protein EGM_02550 [Macaca fascicularis]
Length = 363
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 183/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT + + ++
Sbjct: 207 QQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVIPAEKIDGVFAACQ 282
>gi|358388819|gb|EHK26412.1| hypothetical protein TRIVIDRAFT_63722 [Trichoderma virens Gv29-8]
Length = 378
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 138/227 (60%), Positives = 175/227 (77%), Gaps = 2/227 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 31 AQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELY 90
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEAD 165
GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIIILDEAD
Sbjct: 91 GPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPPFKIIILDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 151 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKKRLES 210
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
I EG+ L+ A+ L S+GDLR+AIT+LQ AARL G+ ++ KD
Sbjct: 211 IAEAEGVTLEDGAVDALIKCSEGDLRKAITFLQSAARLVGAKLSEKD 257
>gi|448537421|ref|XP_003871334.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380355691|emb|CCG25209.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 355
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 142/224 (63%), Positives = 171/224 (76%), Gaps = 7/224 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+A QE V+VL + T N PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 15 PWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V + + YPCPPYKIIILDEADSM
Sbjct: 75 NLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTPEDLKNYPCPPYKIIILDEADSM 134
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETY+ +TRF +CNYI+RII+PLASRC+KFRFK L+ E +R+ +I
Sbjct: 135 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIA 194
Query: 228 NEEGLNLDAE-----ALSTLSSISQGDLRRAITYLQGAARLFGS 266
NEE LNLD L+ + IS GDLR+AITYLQ A++L S
Sbjct: 195 NEEQLNLDKSQGEDGVLNEVLKISNGDLRKAITYLQSASKLSTS 238
>gi|402861875|ref|XP_003895301.1| PREDICTED: replication factor C subunit 4, partial [Papio anubis]
Length = 298
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 146/245 (59%), Positives = 179/245 (73%), Gaps = 3/245 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT
Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 157
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I +
Sbjct: 158 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEK 217
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGY-PTGGSGGA 287
E + + E ++ L +S+GDLR+AIT+LQ A RL G IT + + ++G P G
Sbjct: 218 ENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIAGVIPAEKMDGV 277
Query: 288 FRGVQ 292
F Q
Sbjct: 278 FAACQ 282
>gi|406866228|gb|EKD19268.1| activator 1 41 kDa subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 385
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 141/220 (64%), Positives = 172/220 (78%), Gaps = 2/220 (0%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 32 QPWVEKYRPKNLNDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 91
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 92 PELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRALYPCPPYKIIILDEADS 151
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L RV I
Sbjct: 152 MTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDVGNAKRRVEEI 211
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+EG++L+ A TL S+GDLR+AIT+LQ AARL G+
Sbjct: 212 AEKEGVSLEDGAAETLIRCSEGDLRKAITFLQSAARLVGA 251
>gi|347829788|emb|CCD45485.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 379
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 140/220 (63%), Positives = 173/220 (78%), Gaps = 2/220 (0%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 93 PELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYS++TRF ICNY++RII+PLASRC+KFRFK L + RV I
Sbjct: 153 MTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVREI 212
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
++EG+ L+ A+ L S+GDLR+AITYLQ AARL G+
Sbjct: 213 ADKEGVRLEEGAVEALIKCSEGDLRKAITYLQSAARLVGA 252
>gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii str.
Silveira]
Length = 393
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 139/228 (60%), Positives = 171/228 (75%), Gaps = 5/228 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGIN+VR KIK FA + + + R YPCPP+KIIILDE
Sbjct: 96 PKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYRKQYPCPPFKIIILDE 155
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME +S++TRF +CNY++RII+PLASRC+KFRFK L +R+
Sbjct: 156 ADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDGSAAGTRL 215
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK 271
I E L LD + L S+GDLRRAITY+Q AARL GS ++ K
Sbjct: 216 EEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQSAARLVGSGLSGK 263
>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
Length = 359
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 178/240 (74%), Gaps = 7/240 (2%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 32 KLKPV-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 86
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI+
Sbjct: 87 LAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRADGKVCPPFKIV 145
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 146 ILDEADSMTSAAQGALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQ 205
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278
R+L + +E + + +EA+S L +S GDLR+AITYLQ A RL G IT K + ++G
Sbjct: 206 QQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAG 265
>gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS]
gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
Length = 393
Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 139/228 (60%), Positives = 171/228 (75%), Gaps = 5/228 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGIN+VR KIK FA + + + R YPCPP+KIIILDE
Sbjct: 96 PKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYRKQYPCPPFKIIILDE 155
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME +S++TRF +CNY++RII+PLASRC+KFRFK L +R+
Sbjct: 156 ADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDGSAAGTRL 215
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK 271
I E L LD + L S+GDLRRAITY+Q AARL GS ++ K
Sbjct: 216 EEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQSAARLVGSGLSGK 263
>gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus]
gi|81916548|sp|Q99J62.1|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus]
gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus]
gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus]
Length = 364
Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 149/252 (59%), Positives = 185/252 (73%), Gaps = 8/252 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VS 277
R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D+I+ ++
Sbjct: 207 QQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIA 266
Query: 278 GY-PTGGSGGAF 288
G P G F
Sbjct: 267 GVIPAATIDGIF 278
>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
gallopavo]
Length = 362
Score = 299 bits (766), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 142/230 (61%), Positives = 175/230 (76%), Gaps = 2/230 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 37 PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI+ILDEADSMT
Sbjct: 97 ELFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRADGEVCPPFKIVILDEADSMTS 155
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++ R+L + +
Sbjct: 156 AAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEK 215
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278
E + + +EA+S L +S+GDLR+AITYLQ A RL G IT K + ++G
Sbjct: 216 ENVKITSEAVSYLVKVSEGDLRKAITYLQSATRLMGGKEITEKTVTEIAG 265
>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
Length = 345
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/221 (62%), Positives = 172/221 (77%), Gaps = 2/221 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ +PWVEKYRP+ DVAHQ +V+ L T+ A+ PH+LFYGPPGTGKT+T LA++ +L
Sbjct: 21 AEKPWVEKYRPRTTADVAHQSQVIATLRATISGADMPHLLFYGPPGTGKTSTILALSREL 80
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FGP+L K RVLELNASD+RGI+VVR KIKTFA+ +V G GYPCPP+KIIILDEAD+
Sbjct: 81 FGPQLMKERVLELNASDERGISVVREKIKTFASTSVSKGV--DGYPCPPFKIIILDEADA 138
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT AQ+ALRRTME YS VTRF ICNYISRIIEPLASRCAKFRFKPLS + + R+ HI
Sbjct: 139 MTAAAQSALRRTMEKYSNVTRFCLICNYISRIIEPLASRCAKFRFKPLSRDTLVGRLQHI 198
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
++E + E L+ + + GD+R+AIT+LQ A+RL GSS
Sbjct: 199 RDKEDVQCSDEVLARIIDLVDGDMRQAITFLQSASRLCGSS 239
>gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 142/216 (65%), Positives = 168/216 (77%), Gaps = 2/216 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V VL +L +AN PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 21 PWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGP 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSM 167
+L KSRVLELNASD+RGI +VR K+K FA + V S + YPCPPYK+IILDEADSM
Sbjct: 81 DLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILDEADSM 140
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRRTMETYS VTRF ICNYI+RII+PLA RC+KFRFKPL+ + R+ +I
Sbjct: 141 TYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLALRCSKFRFKPLANDNAVQRLRYIV 200
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+E LN+D + S L +IS GDLRRAITYLQ AARL
Sbjct: 201 QQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARL 236
>gi|354544379|emb|CCE41102.1| hypothetical protein CPAR2_300910 [Candida parapsilosis]
Length = 357
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 142/224 (63%), Positives = 171/224 (76%), Gaps = 7/224 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+A QE V+VL + T N PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 15 PWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V + + YPCPPYKIIILDEADSM
Sbjct: 75 NLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPTPEDLKNYPCPPYKIIILDEADSM 134
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETY+ +TRF +CNYI+RII+PLASRC+KFRFK L+ E +R+ +I
Sbjct: 135 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNSENSLNRLKYIA 194
Query: 228 NEEGLNLDAE-----ALSTLSSISQGDLRRAITYLQGAARLFGS 266
NEE LNLD L+ + IS GDLR+AITYLQ A++L S
Sbjct: 195 NEEHLNLDKSQGEDAVLNEVLRISNGDLRKAITYLQSASKLSTS 238
>gi|408398889|gb|EKJ78015.1| hypothetical protein FPSE_01803 [Fusarium pseudograminearum CS3096]
Length = 382
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/237 (58%), Positives = 181/237 (76%), Gaps = 2/237 (0%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
+++ P +QPWVEKYRPK + DV Q+ V VL TL+++N PHMLFYGPPGTGKT+
Sbjct: 22 QKQDKPTNTRNQPWVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTS 81
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPP 155
T LA+A +L+GP++ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP
Sbjct: 82 TVLALAKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPPPGYKDKYPCPP 141
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L
Sbjct: 142 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 201
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
+ R+ I +EG+ L+ A+ L S+GDLR+AIT+LQ AARL G+S + KD
Sbjct: 202 QSNAKKRLEEIAEKEGVPLEDGAVDALIKCSEGDLRKAITFLQSAARLVGASASDKD 258
>gi|431838862|gb|ELK00791.1| Replication factor C subunit 4 [Pteropus alecto]
Length = 394
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/256 (58%), Positives = 183/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 63 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 117
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 118 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 176
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 177 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 236
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVS 277
R+L I +E + + E +S L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 237 QQQRLLDIAGKEHVKISNEGVSYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 296
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 297 GVIPAETIDGIFAACQ 312
>gi|212546601|ref|XP_002153454.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
gi|210064974|gb|EEA19069.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
Length = 394
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/224 (62%), Positives = 166/224 (74%), Gaps = 5/224 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 39 QPWVEKYRPKSLDDVAAQDHTTTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 98
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P LY++R+LELNASD+RGIN+VR KIK FA + R YPCPP+KIIILDE
Sbjct: 99 PTLYRTRILELNASDERGINIVREKIKDFARTQLSQPSGLDAAYREKYPCPPFKIIILDE 158
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 159 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDGVSAGDRI 218
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
I EGL LD + TL S+GDLRRAITYLQ AARL G++
Sbjct: 219 SEIAAAEGLTLDEGVVETLIRCSEGDLRRAITYLQSAARLVGAT 262
>gi|259486085|tpe|CBF83646.1| TPA: subunit of heteropentameric Replication factor C (RF-C)
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 387
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/229 (61%), Positives = 170/229 (74%), Gaps = 5/229 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 34 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA V + + YPCPP+KIIILDE
Sbjct: 94 PALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDE 153
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFKPL R+
Sbjct: 154 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRL 213
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
I E L+L+ + L S S GDLRRAITYLQ AARL G++ +KD
Sbjct: 214 AQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARLVGAAKAAKD 262
>gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 182/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KF FKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFSFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVIPAEKIDGVFAACQ 282
>gi|71000134|ref|XP_754784.1| DNA replication factor C subunit Rfc2 [Aspergillus fumigatus Af293]
gi|66852421|gb|EAL92746.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus Af293]
gi|159127792|gb|EDP52907.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus A1163]
Length = 394
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/225 (62%), Positives = 168/225 (74%), Gaps = 9/225 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 39 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 98
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-------GYPCPPYKIIIL 161
P LY+SR+LELNASD+RGI +VR K+K FA + Q G YPCPP+KIIIL
Sbjct: 99 PALYRSRILELNASDERGIGIVREKVKGFARTQLS--QPTGLDSSYFEQYPCPPFKIIIL 156
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFKPL +
Sbjct: 157 DEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAAE 216
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
R+ HI E L LD + L S S+GDLRRAITY+Q AARL G+
Sbjct: 217 RLAHIARLENLKLDEGVIDKLISCSEGDLRRAITYMQSAARLVGA 261
>gi|448102295|ref|XP_004199768.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359381190|emb|CCE81649.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 138/216 (63%), Positives = 171/216 (79%), Gaps = 2/216 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +VA QE V++L TLE+AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 19 PWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALARQLYGP 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
L+KSRVLELNASDDRGI++VR K+K FA +AV + + YPCPPYK+IILDEADSM
Sbjct: 79 RLFKSRVLELNASDDRGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILDEADSM 138
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRT+E YS VTRF ICNYI+RII+PL+SRC+KFRF L+ + R+ +I
Sbjct: 139 TNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNDNALQRIRYIV 198
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+E LN+D + TL S+S GDLR+AIT+LQ A+RL
Sbjct: 199 EKENLNVDEDVPETLLSMSNGDLRKAITFLQSASRL 234
>gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
Length = 387
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/247 (58%), Positives = 182/247 (73%), Gaps = 11/247 (4%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+KFRFK L + R+ I EG+ L+ A+ L S+GDLR+AITYLQ AARL G+
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLVGA 251
Query: 267 -SITSKD 272
+ T+KD
Sbjct: 252 VAATAKD 258
>gi|366988801|ref|XP_003674168.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
gi|342300031|emb|CCC67788.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
Length = 350
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/239 (59%), Positives = 178/239 (74%), Gaps = 6/239 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
S+PWVEKYRPKQ+ D+A Q V VL TL++AN PHMLFYGPPGTGKT+T LA+A +
Sbjct: 20 HQSKPWVEKYRPKQLDDIAAQGHAVTVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDE
Sbjct: 80 LFGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFKPL R+
Sbjct: 140 ADSMTSDAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNAIDRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSITSKDLISVSG 278
++ EE ++ + + L T+ IS GDLRRAIT LQ AA+ ++TS+++ ++G
Sbjct: 200 RYVATEESVSYEDDVLKTILDISAGDLRRAITLLQSAAKRIQYTGAENVTSQNVKELAG 258
>gi|154324182|ref|XP_001561405.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10]
Length = 344
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/220 (63%), Positives = 173/220 (78%), Gaps = 2/220 (0%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 93 PELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYS++TRF ICNY++RII+PLASRC+KFRFK L + RV I
Sbjct: 153 MTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVREI 212
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
++EG+ L+ A+ L S+GDLR+AITYLQ AARL G+
Sbjct: 213 ADKEGVRLEEGAVEALIKCSEGDLRKAITYLQSAARLVGA 252
>gi|156057403|ref|XP_001594625.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980]
gi|154702218|gb|EDO01957.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 412
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/226 (63%), Positives = 177/226 (78%), Gaps = 3/226 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + S R YPCPPYKIIILDEADS
Sbjct: 93 PELIKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYS++TRF ICNY++RII+PLASRC+KFRFK L + RV I
Sbjct: 153 MTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVKEI 212
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
++EG+ L+ A+ L S+GDLR+AITYLQ AARL G +I+ KD
Sbjct: 213 ADKEGVKLEEGAVEALIRCSEGDLRKAITYLQSAARLVG-AISLKD 257
>gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus]
Length = 363
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/241 (60%), Positives = 178/241 (73%), Gaps = 7/241 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAERENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 G 278
G
Sbjct: 267 G 267
>gi|350296832|gb|EGZ77809.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2509]
Length = 387
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/247 (58%), Positives = 182/247 (73%), Gaps = 11/247 (4%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL K+RVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKARVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+KFRFK L + R+ I EG+ L+ A+ L S+GDLR+AITYLQ AARL G+
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAIDALIKCSEGDLRKAITYLQSAARLVGA 251
Query: 267 -SITSKD 272
+ T+KD
Sbjct: 252 VAATAKD 258
>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 357
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/230 (62%), Positives = 174/230 (75%), Gaps = 2/230 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +L+GP
Sbjct: 34 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
LY+ RVLELNASD+RGI V+R K+KTFA + V +G R G PCPP+KIIILDEADSMT
Sbjct: 94 VLYRQRVLELNASDERGIQVIREKVKTFAQLTV-AGTRPDGKPCPPFKIIILDEADSMTP 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNYISRIIEPL SRC+KFRFKPL +V R+L IC +
Sbjct: 153 PAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNQVQEERLLAICEK 212
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSG 278
E L E++S L +S+GDLR+AIT+LQ AARL I+ + + ++G
Sbjct: 213 ENLKYSGESVSALVRVSEGDLRKAITFLQSAARLSVDKEISERTITEIAG 262
>gi|346321024|gb|EGX90624.1| activator 1 41 kDa subunit [Cordyceps militaris CM01]
Length = 382
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 139/226 (61%), Positives = 171/226 (75%), Gaps = 2/226 (0%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + D+A QE V VL TL+ AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKSLDDIAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADS 166
PE+ KSRVLELNASD+RGI++VR K+K FA + + + R YPCPP+KIIILDEADS
Sbjct: 93 PEMMKSRVLELNASDERGISIVRDKVKNFARMQLTNPPAGYRDKYPCPPFKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTME YSK+TRF ICNY++RII+PLASRC+KFRFK L + R+ I
Sbjct: 153 MTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAKKRLEEI 212
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
E + +D A+ L S+GDLR+A+T+LQ AARL G+ KD
Sbjct: 213 ATAESVPVDDGAIDALIRCSEGDLRKAVTFLQSAARLVGAGAQPKD 258
>gi|119492485|ref|XP_001263608.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
gi|119411768|gb|EAW21711.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
Length = 420
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/245 (58%), Positives = 172/245 (70%), Gaps = 20/245 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 37 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 96
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-------GYPCPPYKIIIL 161
P LY+SR+LELNASD+RGI +VR K+K FA + Q G YPCPP+KIIIL
Sbjct: 97 PALYRSRILELNASDERGIGIVREKVKGFARTQLS--QPTGLDSSYFEQYPCPPFKIIIL 154
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTME YS++TRF +CNY++R+IEPLASRC+KFRFKPL +
Sbjct: 155 DEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRVIEPLASRCSKFRFKPLDNSAAAE 214
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
R+ HI E L LD + L S +GDLRRAITY+Q AARL G +G PT
Sbjct: 215 RLAHIARLENLKLDEGVIDKLISCGEGDLRRAITYMQSAARLVG-----------AGRPT 263
Query: 282 GGSGG 286
G G
Sbjct: 264 GQKDG 268
>gi|114052583|ref|NP_001039359.1| replication factor C subunit 4 [Bos taurus]
gi|88954368|gb|AAI14042.1| Replication factor C (activator 1) 4, 37kDa [Bos taurus]
gi|296491286|tpg|DAA33349.1| TPA: replication factor C 4 [Bos taurus]
Length = 337
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/241 (60%), Positives = 180/241 (74%), Gaps = 7/241 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIA 266
Query: 278 G 278
G
Sbjct: 267 G 267
>gi|426217728|ref|XP_004003104.1| PREDICTED: replication factor C subunit 4 isoform 2 [Ovis aries]
Length = 337
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/241 (60%), Positives = 180/241 (74%), Gaps = 7/241 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIA 266
Query: 278 G 278
G
Sbjct: 267 G 267
>gi|355716186|gb|AES05531.1| replication factor C 4, 37kDa [Mustela putorius furo]
Length = 272
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/241 (60%), Positives = 180/241 (74%), Gaps = 7/241 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 29 KKTKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 83
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 84 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 142
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 143 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 202
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I ++E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 203 QQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 262
Query: 278 G 278
G
Sbjct: 263 G 263
>gi|194222681|ref|XP_001498117.2| PREDICTED: replication factor C subunit 4 [Equus caballus]
Length = 364
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/241 (60%), Positives = 179/241 (74%), Gaps = 7/241 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++
Sbjct: 207 QQQRLLDIAGKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIA 266
Query: 278 G 278
G
Sbjct: 267 G 267
>gi|74150977|dbj|BAE27622.1| unnamed protein product [Mus musculus]
Length = 370
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 149/252 (59%), Positives = 185/252 (73%), Gaps = 8/252 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VS 277
R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D+I+ ++
Sbjct: 207 QQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIA 266
Query: 278 GY-PTGGSGGAF 288
G P G F
Sbjct: 267 GVIPAATIDGIF 278
>gi|432853216|ref|XP_004067597.1| PREDICTED: replication factor C subunit 4-like [Oryzias latipes]
Length = 355
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/230 (62%), Positives = 174/230 (75%), Gaps = 2/230 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +L+GP
Sbjct: 32 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELY+ RVLELNASD+RGI VVR K+KTFA + V +G R G CPP+KIIILDEADSMT
Sbjct: 92 ELYRQRVLELNASDERGIQVVREKVKTFAQLTV-AGTRPDGKLCPPFKIIILDEADSMTA 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNYISRIIEPL SRC+KFRFKPL+ + R+L IC +
Sbjct: 151 PAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANRIQEERLLEICEK 210
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSG 278
E L E++ L +S+GDLR+AIT+LQ AARL IT + ++ ++G
Sbjct: 211 ENLKYTRESIEALVQVSEGDLRKAITFLQCAARLNMDKEITDRAIVEIAG 260
>gi|392595637|gb|EIW84960.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 369
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 148/256 (57%), Positives = 184/256 (71%), Gaps = 15/256 (5%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K + P LQ PWVEKYRPK + +V+ QE V VL TL + N PHMLFYGPPGTGKT+
Sbjct: 12 KHTVEPALQ---PWVEKYRPKTIDEVSAQEHAVAVLRKTLFSTNLPHMLFYGPPGTGKTS 68
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYP 152
T LA+A QLFGP+ +++RVLELNASDDRGI++VR KIK FA A AV S + YP
Sbjct: 69 TILALARQLFGPDNFRNRVLELNASDDRGISIVREKIKNFARQTPRAQAVASDGK--TYP 126
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
CPPYKIIILDEADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF
Sbjct: 127 CPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFT 186
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----- 267
PL S+R+ HI +E +++ E + L S GDLRR+ITYLQ A+RL SS
Sbjct: 187 PLDSSSTSNRLSHIAAQEHVDVSPEVIQALIDTSSGDLRRSITYLQSASRLSASSEPPTP 246
Query: 268 ITSKDLISVSGYPTGG 283
IT++D+ ++G G
Sbjct: 247 ITARDIQEIAGVVPNG 262
>gi|449277649|gb|EMC85743.1| Replication factor C subunit 4 [Columba livia]
Length = 362
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 141/230 (61%), Positives = 175/230 (76%), Gaps = 2/230 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 37 PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI+ILDEADSMT
Sbjct: 97 ELFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRSDGKVCPPFKIVILDEADSMTS 155
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++ R+L + +
Sbjct: 156 AAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVAEK 215
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278
E + + +EA+S L +S+GDLR+AIT+LQ A RL G IT K + ++G
Sbjct: 216 EHVKISSEAVSYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIVTEIAG 265
>gi|392567387|gb|EIW60562.1| replication factor C [Trametes versicolor FP-101664 SS1]
Length = 379
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 179/240 (74%), Gaps = 12/240 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 24 QPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 83
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
PE ++SRVLELNASD+RGI++VR KIK FA A AV + YPCPPYKIIILDE
Sbjct: 84 PENFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSADG--TVYPCPPYKIIILDE 141
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR ME Y+++TRF +CNY++RIIEPLASRC+KFRFKPL S+R+
Sbjct: 142 ADSMTQDAQAALRRIMELYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPASTSARI 201
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278
+ + E + + E + L S SQGDLRRAITYLQ A+RL +SIT++D+ ++G
Sbjct: 202 AQVASAENVPVTPETVDALISTSQGDLRRAITYLQSASRLALASTPPTSITARDVQEIAG 261
>gi|348513512|ref|XP_003444286.1| PREDICTED: replication factor C subunit 4-like [Oreochromis
niloticus]
Length = 357
Score = 296 bits (759), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 143/230 (62%), Positives = 174/230 (75%), Gaps = 2/230 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +L+GP
Sbjct: 34 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELY+ RVLELNASD+RGI VVR K+K FA + V +G R G CPP+KIIILDEADSMT
Sbjct: 94 ELYRQRVLELNASDERGIQVVRDKVKNFAQLTV-AGTRPDGKSCPPFKIIILDEADSMTA 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNYISRIIEPL SRC+KFRFKPL+ ++ R+L IC +
Sbjct: 153 PAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQIQEERLLEICEK 212
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSG 278
E L E+++ L +S+GDLR+AIT+LQ AARL IT +I ++G
Sbjct: 213 ENLKYTKESIAALVRVSEGDLRKAITFLQSAARLNVDKEITDCAVIEIAG 262
>gi|395839806|ref|XP_003792767.1| PREDICTED: replication factor C subunit 4 [Otolemur garnettii]
Length = 365
Score = 296 bits (759), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 146/256 (57%), Positives = 185/256 (72%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 34 KKAKPV-----PWVEKYRPKSVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 88
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + V SG R G CPP+KI
Sbjct: 89 ILAAARELFGPELFRLRVLELNASDERGIQVIREKVKNFAQLTV-SGSRSDGKLCPPFKI 147
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 148 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 207
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L+I +E + + +E ++ L +S+GDLR+AIT+LQ A RL G IT + + ++
Sbjct: 208 QQQRLLNITEKENVKISSEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEEVITDIA 267
Query: 278 GY-PTGGSGGAFRGVQ 292
G P+ G F Q
Sbjct: 268 GVIPSETIDGVFAACQ 283
>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
Length = 364
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 147/260 (56%), Positives = 185/260 (71%), Gaps = 16/260 (6%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVSVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI---- 274
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G ++++I
Sbjct: 207 QQQRLLDIAEKENVIISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTENVITDIA 266
Query: 275 ------SVSGYPTGGSGGAF 288
+++G GG+F
Sbjct: 267 GVIPPETINGIFAACQGGSF 286
>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
sapiens]
gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 143/230 (62%), Positives = 175/230 (76%), Gaps = 2/230 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT
Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 157
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I +
Sbjct: 158 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKK 217
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278
E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++G
Sbjct: 218 ENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAG 267
>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 402
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 140/224 (62%), Positives = 170/224 (75%), Gaps = 7/224 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V+VL + T N PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 36 PWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V + YPCPPYKIIILDEADSM
Sbjct: 96 NLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDEADSM 155
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETY+ +TRF +CNYI+RII+PLASRC+KFRFK L+ E +R+ +I
Sbjct: 156 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIA 215
Query: 228 NEEGLNLDA-----EALSTLSSISQGDLRRAITYLQGAARLFGS 266
EE L+LD E L+ + IS GD+R+AITYLQ A++L S
Sbjct: 216 KEENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQSASKLSSS 259
>gi|349605347|gb|AEQ00618.1| Replication factor C subunit 4-like protein, partial [Equus
caballus]
Length = 266
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 143/230 (62%), Positives = 175/230 (76%), Gaps = 2/230 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 11 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT
Sbjct: 71 ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++ R+L I +
Sbjct: 130 AAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGK 189
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278
E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++G
Sbjct: 190 EHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAG 239
>gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130]
gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130]
Length = 380
Score = 296 bits (757), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 144/253 (56%), Positives = 182/253 (71%), Gaps = 13/253 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++QPWVEKYRPK + +++ QE VL+ TL +AN PHMLFYGPPGTGKT+T LA+A +L
Sbjct: 27 ANQPWVEKYRPKTINEISAQEHTTSVLSRTLTSANLPHMLFYGPPGTGKTSTILALAREL 86
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGYPCPPYKIII 160
FGP+ +++RVLELNASD+RGI++VR KIK FA AV S + YPCPPYKIII
Sbjct: 87 FGPDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQQAVSSDGKT--YPCPPYKIII 144
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT+DAQ ALRR METY+K+TRF +CNY++RIIEPLASRC+KFRF PL + S
Sbjct: 145 LDEADSMTQDAQGALRRIMETYAKITRFCLVCNYVTRIIEPLASRCSKFRFTPLDPDSAS 204
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLIS 275
+R+ +I E +++ + L S S GDLRRAITYLQ AARL GSS I +D+
Sbjct: 205 ARLSYIAQAENIDISKPVIDALISTSHGDLRRAITYLQSAARLAGSSDPPTPILPRDIQE 264
Query: 276 VSGYPTGGSGGAF 288
++G G F
Sbjct: 265 IAGVVPDGVVNDF 277
>gi|409082644|gb|EKM83002.1| hypothetical protein AGABI1DRAFT_69120 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 372
Score = 296 bits (757), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 138/215 (64%), Positives = 168/215 (78%), Gaps = 7/215 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 25 QPWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +K+RVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGK--TYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF PL E +SR+
Sbjct: 143 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRL 202
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+I EE +++D + L ++S GDLRRAITYLQ
Sbjct: 203 TYIAKEEQIDVDTSVIDALITVSNGDLRRAITYLQ 237
>gi|389631703|ref|XP_003713504.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
gi|351645837|gb|EHA53697.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
Length = 384
Score = 296 bits (757), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 141/228 (61%), Positives = 175/228 (76%), Gaps = 2/228 (0%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
+ K P +QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+
Sbjct: 23 QEKQNPENTRTQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTS 82
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPP 155
T LA+A +LFGPEL KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP
Sbjct: 83 TVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYKSKYPCPP 142
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L
Sbjct: 143 FKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLD 202
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+E SR+ I +EG+ L+ A+ L S+GDLR+AIT+LQ AARL
Sbjct: 203 QENARSRLEDIAAKEGVALEDGAVDALIKCSEGDLRKAITFLQSAARL 250
>gi|344299747|gb|EGW30100.1| replication factor C, subunit RFC4 [Spathaspora passalidarum NRRL
Y-27907]
Length = 346
Score = 296 bits (757), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 143/221 (64%), Positives = 170/221 (76%), Gaps = 4/221 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA QE V +L TL TAN PHMLFYGPPGTGKT+T LA++ QLFGP
Sbjct: 16 PWVEKYRPKNLDDVASQEHAVAILKRTLATANLPHMLFYGPPGTGKTSTILALSKQLFGP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
L KSRVLELNASD+RGIN+VR+KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 76 NLSKSRVLELNASDERGINIVRSKIKNFARLTISNPTPEDLANYPCPPYKIIILDEADSM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYS +TRF ICNYI+RII+PLASRC+KFRFK L+ + +R+ +I
Sbjct: 136 TNDAQSALRRTMETYSGMTRFCLICNYITRIIDPLASRCSKFRFKLLNNDDGLNRLKYIA 195
Query: 228 NEEGLNLDAE--ALSTLSSISQGDLRRAITYLQGAARLFGS 266
+E L LD E L + IS GDLR+AITYLQ A++L S
Sbjct: 196 EQEDLTLDQEEPVLQQVLDISGGDLRKAITYLQSASKLSNS 236
>gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001]
Length = 383
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 137/221 (61%), Positives = 172/221 (77%), Gaps = 2/221 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 32 AQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELY 91
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + + YPCPP+KIIILDEAD
Sbjct: 92 GPEMIKSRVLELNASDERGISIVREKVKDFARMQLTNPTNEYKKRYPCPPFKIIILDEAD 151
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 152 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLGD 211
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
I EG+ L+ A+ L S+GDLR+AITYLQ AARL G+
Sbjct: 212 IAENEGVQLEDGAVDALIKCSEGDLRKAITYLQSAARLVGA 252
>gi|403416153|emb|CCM02853.1| predicted protein [Fibroporia radiculosa]
Length = 371
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 179/240 (74%), Gaps = 12/240 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + D++ QE V VL TL + N PHMLFYGPPG+GKT+T LA++ QLFG
Sbjct: 22 QPWVEKYRPKTIDDISAQEHTVAVLRRTLTSTNLPHMLFYGPPGSGKTSTILALSRQLFG 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI +VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 82 PDNFRSRVLELNASDERGIAIVRDKIKNFARQTPRAQAVSSDGK--TYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRFKPL SSR+
Sbjct: 140 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDSTSTSSRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
I EE +++ E +STL + S GDLRR+ITYLQ A+RL S+ IT D+ ++G
Sbjct: 200 SQIALEEHISVTDEVVSTLINTSHGDLRRSITYLQSASRLAMSTNPPTEITPSDIQEIAG 259
>gi|345566715|gb|EGX49657.1| hypothetical protein AOL_s00078g146 [Arthrobotrys oligospora ATCC
24927]
Length = 387
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 137/219 (62%), Positives = 168/219 (76%), Gaps = 2/219 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV Q+ V VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 36 PWVEKYRPKTLSDVTAQDHTVSVLRRTLQSSNLPHMLFYGPPGTGKTSTILALAKELYGP 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADSM 167
EL K+RVLELNASD+RGI++VR K+K FA +AV + YPCPPYKIIILDEADSM
Sbjct: 96 ELMKTRVLELNASDERGISIVREKVKNFAKIAVSTTTAANASKYPCPPYKIIILDEADSM 155
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFKPL E R+ I
Sbjct: 156 THDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEGNTRLRLSSIA 215
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
EG+ + TL ++ GDLR+AIT+LQ AA+L G+
Sbjct: 216 EAEGVKYQEGVVDTLIKVADGDLRKAITFLQSAAKLHGA 254
>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
Length = 358
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/234 (60%), Positives = 174/234 (74%), Gaps = 2/234 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +
Sbjct: 30 QRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GP+LY+ RVLELNASD+RGI VVR K+K FA + V +G R G CPP+KIIILDEAD
Sbjct: 90 LYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTV-AGTRPDGKTCPPFKIIILDEAD 148
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRTME S+ TRF ICNY+SRIIEPL SRC+KFRFKPL+ +V R+L
Sbjct: 149 SMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILE 208
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSG 278
IC +E L E + L +S+GDLR+AIT+LQ ARL IT + +I ++G
Sbjct: 209 ICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIAG 262
>gi|344229660|gb|EGV61545.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 359
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 141/219 (64%), Positives = 166/219 (75%), Gaps = 2/219 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DVA Q+ V+VL TL +AN PHMLFYGPPGTGKT+T LA+A L+GP
Sbjct: 23 PWVEKYRPKSLDDVASQDHTVKVLKRTLVSANLPHMLFYGPPGTGKTSTILALAKSLYGP 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
L+KSRVLELNASD+RGI++VR KIK FA + + S + YPCPPYKIIILDEADSM
Sbjct: 83 ILFKSRVLELNASDERGISIVRQKIKNFARLTISNPSPEDLEKYPCPPYKIIILDEADSM 142
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYS VTRF +CNYI+RII+PLASRC+KFRFKPL+ R+ +I
Sbjct: 143 TNDAQSALRRTMETYSGVTRFCLVCNYITRIIDPLASRCSKFRFKPLNNSDALGRLQYIA 202
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
EG+ + L + IS GDLRRAITYLQ A RL S
Sbjct: 203 GHEGIEAEEGTLEEVLKISNGDLRRAITYLQSATRLHSS 241
>gi|426200510|gb|EKV50434.1| hypothetical protein AGABI2DRAFT_200125 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 137/215 (63%), Positives = 168/215 (78%), Gaps = 7/215 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK ++DV+ QE + VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 25 QPWVEKYRPKTIEDVSAQEHTIAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +K+RVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGK--TYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF PL E +SR+
Sbjct: 143 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRL 202
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+I EE +++D + L ++S GDLRRAITYLQ
Sbjct: 203 TYIAKEEQIDVDTSVIDALITVSNGDLRRAITYLQ 237
>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C subunit 4 [Taeniopygia guttata]
Length = 362
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 140/230 (60%), Positives = 173/230 (75%), Gaps = 2/230 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 37 PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+L++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI+ILDEADSMT
Sbjct: 97 DLFRQRVLELNASDERGIQVIREKVKAFAQL-TASGSRSDGKMCPPFKIVILDEADSMTS 155
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+ + R+L + +
Sbjct: 156 AAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEK 215
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278
E + + EA+S L +S+GDLR+AIT+LQ A RL G IT K + ++G
Sbjct: 216 EHVKISNEAISYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIITEIAG 265
>gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
Length = 382
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 144/245 (58%), Positives = 178/245 (72%), Gaps = 10/245 (4%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
TT SS EK + E R QPWVEKYRPK + DV Q+ + VL TL+ +N PH
Sbjct: 18 TTSSSTEKQKSETTR--------VQPWVEKYRPKTLSDVTAQDHTITVLERTLQASNLPH 69
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 70 MLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTN 129
Query: 145 --GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PL
Sbjct: 130 PPAGYKTRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 189
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
ASRC+KFRFK L + R+ I EG+ ++ A+ L S GDLR+AIT+LQ AAR
Sbjct: 190 ASRCSKFRFKSLDQGNARRRLEEIARLEGVPIEDAAVDALIKCSDGDLRKAITFLQSAAR 249
Query: 263 LFGSS 267
L G+S
Sbjct: 250 LVGAS 254
>gi|409046196|gb|EKM55676.1| hypothetical protein PHACADRAFT_144345 [Phanerochaete carnosa
HHB-10118-sp]
Length = 368
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/251 (58%), Positives = 180/251 (71%), Gaps = 15/251 (5%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K + P LQ PWVEKYRPK + DV+ QE V VL TL + N PHMLFYGPPGTGKT+
Sbjct: 14 KHTIDPALQ---PWVEKYRPKTIDDVSAQEHTVAVLRRTLTSTNLPHMLFYGPPGTGKTS 70
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYP 152
T LA+A QLFGP+ ++SRVLELNASD+RGI++VR KIK FA A A S + YP
Sbjct: 71 TILALARQLFGPDNFRSRVLELNASDERGISIVREKIKDFARQTPRAQAASSDDK--TYP 128
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
CPPYKIIILDEADSMT+DAQ ALRR ME Y ++TRF +CNY++RIIEPLASRC+KFRFK
Sbjct: 129 CPPYKIIILDEADSMTQDAQAALRRIMENYVRITRFCLVCNYVTRIIEPLASRCSKFRFK 188
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----- 267
PL S+R+ I + E +++ + TL + S GDLRR+ITYLQ A+RL S+
Sbjct: 189 PLDNASTSARLAAIASAENIHIPDSVIDTLINTSHGDLRRSITYLQSASRLANSTDPPAP 248
Query: 268 ITSKDLISVSG 278
ITS D+ ++G
Sbjct: 249 ITSADIQEIAG 259
>gi|405961159|gb|EKC27004.1| Replication factor C subunit 4 [Crassostrea gigas]
Length = 343
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/258 (57%), Positives = 182/258 (70%), Gaps = 2/258 (0%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
TT P+ E K Q PWVEK+RP+ V DVA+Q+EVV VL +LE ++ P+
Sbjct: 12 TTSKDPKSLEAAGSGKGGKSKQKHVPWVEKFRPRSVDDVAYQDEVVAVLKKSLEGSDLPN 71
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
+LFYGPPGTGKT+T LA A LFG E+ K RVLELNASD+RGINVVR K+K FA S
Sbjct: 72 LLFYGPPGTGKTSTILAAARSLFGAEMMKLRVLELNASDERGINVVREKVKKFAQT-TAS 130
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
G R G PCPP+KIIILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEP+AS
Sbjct: 131 GTRPDGKPCPPFKIIILDEADSMTSPAQAALRRTMEKESKSTRFCLICNYVSRIIEPIAS 190
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RCAKFRFKPL++++++ R+ IC E ++ D E++ L S+GD+R+AITYLQ ARL
Sbjct: 191 RCAKFRFKPLADQILTERLQGICEAEKISYDKESIKALIDSSEGDMRKAITYLQSVARLK 250
Query: 265 GSSITSK-DLISVSGYPT 281
G SK D+ ++G T
Sbjct: 251 GDEEVSKADVFEIAGANT 268
>gi|400601260|gb|EJP68903.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 382
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/226 (61%), Positives = 170/226 (75%), Gaps = 2/226 (0%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKSLDDVAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADS 166
PE+ KSRVLELNASD+RGI++VR K+K FA + + + R YPCPP+KIIILDEADS
Sbjct: 93 PEMMKSRVLELNASDERGISIVREKVKNFARMQLTNPPAGYREKYPCPPFKIIILDEADS 152
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTME YSK+TRF ICNY++RII+PLASRC+KFRFK L + R+ I
Sbjct: 153 MTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAMKRLEEI 212
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
E + L A+ L S+GDLR+A+T+LQ AARL G+ KD
Sbjct: 213 AAAESVPLGDGAIDALVRCSEGDLRKAVTFLQSAARLIGAGAQVKD 258
>gi|346979302|gb|EGY22754.1| replication factor C subunit 2 [Verticillium dahliae VdLs.17]
Length = 380
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 135/222 (60%), Positives = 173/222 (77%), Gaps = 2/222 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V +L TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 32 AQPWVEKYRPKTLSDVTAQDHTVTILQRTLQASNLPHMLFYGPPGTGKTSTILALAKELY 91
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GPEL K+RVLELNASD+RGI++VR K+K FA + + + + + YPCPP+KIIILDEAD
Sbjct: 92 GPELIKTRVLELNASDERGISIVREKVKNFARMQLTNPTAEYKKRYPCPPFKIIILDEAD 151
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 152 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLEE 211
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
I EG+ L+ A+ L S+GDLR+AIT+LQ AARL G++
Sbjct: 212 IAKNEGVELEEGAVDALIKCSEGDLRKAITFLQSAARLVGAT 253
>gi|358395863|gb|EHK45250.1| hypothetical protein TRIATDRAFT_151487 [Trichoderma atroviride IMI
206040]
Length = 381
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/227 (60%), Positives = 173/227 (76%), Gaps = 2/227 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 31 AQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELY 90
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEAD 165
GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIIILDEAD
Sbjct: 91 GPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPPFKIIILDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 151 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLES 210
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
I EG+ L+ A+ L S+GDLR+AIT+LQ AARL G+ KD
Sbjct: 211 IAEAEGVTLEDGAIDALIKCSEGDLRKAITFLQSAARLVGAKPLEKD 257
>gi|452979410|gb|EME79172.1| hypothetical protein MYCFIDRAFT_79709 [Pseudocercospora fijiensis
CIRAD86]
Length = 405
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 140/225 (62%), Positives = 171/225 (76%), Gaps = 7/225 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 34 QPWVEKYRPKSLDDVAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-------GQRRGGYPCPPYKIIIL 161
PEL KSRVLELNASD+RGI++VR K+K FA + + + + R YPCPPYKII+L
Sbjct: 94 PELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKIIVL 153
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTMETYSK+TRF +CNY++RII+PLASRC+KFRFK L E
Sbjct: 154 DEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKLLDEGNAGR 213
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
R+ I E + L+ +TL S GDLR+AIT+LQ AARL G+
Sbjct: 214 RIEDIARLENVTLEEGVTNTLLRCSDGDLRKAITFLQSAARLVGA 258
>gi|365981921|ref|XP_003667794.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
gi|343766560|emb|CCD22551.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
Length = 354
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 136/220 (61%), Positives = 167/220 (75%), Gaps = 2/220 (0%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L S+PWVEKYRPKQ+ D+ Q V VL TL++AN PHMLFYGPPGTGKT+T LA+A
Sbjct: 23 LHQSKPWVEKYRPKQLDDITAQGHAVSVLKKTLQSANLPHMLFYGPPGTGKTSTILALAK 82
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILD 162
+L+GPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILD
Sbjct: 83 ELYGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYKIIILD 142
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFKPL R
Sbjct: 143 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNSIGR 202
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
+ ++ EE + D + + + IS+GDLRRAIT LQ A++
Sbjct: 203 LEYVAREESVQYDDDVMKCILDISEGDLRRAITLLQSASK 242
>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
Length = 352
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 140/224 (62%), Positives = 170/224 (75%), Gaps = 2/224 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWVEKYRPK++ DVA Q+ VV VL TL +AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 22 EHNKPWVEKYRPKKLDDVAAQDHVVNVLKKTLSSANLPHMLFYGPPGTGKTSTILALTKE 81
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDE 163
LFGPEL K+RVLELNASD+RGI++VR K+K FA + V S Y CPPYKIIILDE
Sbjct: 82 LFGPELMKTRVLELNASDERGISIVREKVKNFARLTVSKPSKHDLENYLCPPYKIIILDE 141
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 142 ADSMTADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKSLDSSNALQRL 201
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
++ EEG+ + A +L T+ IS GDLRRAIT LQ A++ G S
Sbjct: 202 KYVAEEEGVKVKAGSLETILDISAGDLRRAITLLQSASKNIGYS 245
>gi|393245398|gb|EJD52908.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 376
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 143/252 (56%), Positives = 182/252 (72%), Gaps = 13/252 (5%)
Query: 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGT 93
+D K + P LQ PWVEKYRPK ++DV QE V VL TL + N PHMLFYGPPGT
Sbjct: 11 KDAAKHTVDPQLQ---PWVEKYRPKTIEDVTAQEHTVAVLRKTLTSTNLPHMLFYGPPGT 67
Query: 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQR 147
GKT+T LA+A QL+GP+ +++RVLELNASD+RGI +VR KIK FA VA GQ
Sbjct: 68 GKTSTILALARQLYGPDNFRTRVLELNASDERGITIVREKIKDFARQTPRANVASSDGQ- 126
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
YPCPPYKIIILDEADSMT+DAQ ALRR ME Y+++TRF +CNY++RIIEPLASRC+
Sbjct: 127 --TYPCPPYKIIILDEADSMTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRCS 184
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
KFRFKPL R+ +I +EG+N+ + + +L + S GDLRR+ITYLQ A+RL +
Sbjct: 185 KFRFKPLDNSSTHGRLEYIAQQEGVNISQDTIKSLIACSGGDLRRSITYLQTASRLANAQ 244
Query: 268 -ITSKDLISVSG 278
I+ +D+ ++G
Sbjct: 245 PISPRDIQEIAG 256
>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870557|gb|EIT79737.1| replication factor C, subunit RFC4 [Aspergillus oryzae 3.042]
Length = 391
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 166/224 (74%), Gaps = 5/224 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRG---GYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR K+K FA V + +G + YPCPP+KIIILDE
Sbjct: 96 PALYRSRILELNASDERGIAIVREKVKDFARVQLSHPTGVDKSYFEKYPCPPFKIIILDE 155
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTMETYSK+TRF +CNY++RIIEPLASRC+KFRFKPL R+
Sbjct: 156 ADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRL 215
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
I E L L+ + L S GDLRRAITY+Q ARL G++
Sbjct: 216 AQIAKLENLELEDGVVDKLIQCSDGDLRRAITYMQSGARLVGAT 259
>gi|328860731|gb|EGG09836.1| hypothetical protein MELLADRAFT_47409 [Melampsora larici-populina
98AG31]
Length = 382
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/254 (57%), Positives = 180/254 (70%), Gaps = 16/254 (6%)
Query: 39 RKMAP------VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPG 92
RKMA VL S+ PWVEKYRPK ++ V Q+ RVL TL A+ PHMLFYGPPG
Sbjct: 14 RKMAEAPSNPTVLPSALPWVEKYRPKNIESVEGQDATTRVLAKTLHRADLPHMLFYGPPG 73
Query: 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152
TGKT+T LA+A +LFGPEL KSRVLELNASD+RGI+VVR KIK+FA V++ YP
Sbjct: 74 TGKTSTILALARELFGPELMKSRVLELNASDERGISVVRDKIKSFAKVSISPAT--NAYP 131
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
CPP+KIIILDEADSMT+DAQ+ALRR ME YSK+TRF ICNY++RIIEP+ SRC+KFRF
Sbjct: 132 CPPFKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPIVSRCSKFRFT 191
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----- 267
PLS SR+ IC E + + L++L +S GDLRR+IT+LQ A++L S
Sbjct: 192 PLSSTDTLSRLNEICRLENVKVAEPVLASLIKVSDGDLRRSITFLQSASKLRNGSSADDE 251
Query: 268 ---ITSKDLISVSG 278
IT +D+ + G
Sbjct: 252 AGEITQEDVEEIGG 265
>gi|350635059|gb|EHA23421.1| hypothetical protein ASPNIDRAFT_47138 [Aspergillus niger ATCC 1015]
Length = 758
Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 136/223 (60%), Positives = 167/223 (74%), Gaps = 5/223 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 404 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 463
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRR-GGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR KIK FA + G G+ YPCPP+KIIILDE
Sbjct: 464 PSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDE 523
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 524 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERL 583
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
HI E L L+ + L + S+GD+RRAITY+Q AA+L G+
Sbjct: 584 EHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGA 626
>gi|385304250|gb|EIF48275.1| activator 1 41 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 380
Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 134/220 (60%), Positives = 170/220 (77%), Gaps = 2/220 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +V+ Q+ V++L LETAN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 22 PWVEKYRPKNLDEVSSQKTTVQILKKNLETANLPHMLFYGPPGTGKTSTILAMAKQLYGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
L+K+RVLELNASD+RGI++VR +IK FA + V + + YPCPPYK+IILDEADSM
Sbjct: 82 RLFKTRVLELNASDERGISIVRERIKGFARLTVSRPXQEDKANYPCPPYKMIILDEADSM 141
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYS +TRF ICNY++RII+PLASRC+KFRFK L E +R+ +IC
Sbjct: 142 TGDAQSALRRTMETYSGITRFCLICNYVTRIIDPLASRCSKFRFKSLDEGSALTRLEYIC 201
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+E +++D L + IS+GDLRRAI YLQ +RL +
Sbjct: 202 GKESIDVDTNILKEILRISEGDLRRAINYLQSVSRLLSTD 241
>gi|452836376|gb|EME38320.1| hypothetical protein DOTSEDRAFT_161207 [Dothistroma septosporum
NZE10]
Length = 410
Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/225 (61%), Positives = 172/225 (76%), Gaps = 7/225 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 34 QPWVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---SG----QRRGGYPCPPYKIIIL 161
PEL K+RVLELNASD+RGI++VR K+K FA + + SG + + YPCPPYKII+L
Sbjct: 94 PELMKTRVLELNASDERGISIVREKVKDFARMQLSNPPSGPAGEEYKKKYPCPPYKIIVL 153
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTMETYSK+TRF +CNY++RII+PLASRC+KFRFK L E
Sbjct: 154 DEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEGNAGR 213
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
R+ I EG+ ++ TL S+GDLR+AIT+LQ AARL G+
Sbjct: 214 RIEDIAKLEGVKMEEGVTETLLRCSEGDLRKAITFLQSAARLVGA 258
>gi|121705176|ref|XP_001270851.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
gi|119398997|gb|EAW09425.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
Length = 391
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 166/224 (74%), Gaps = 9/224 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 36 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 95
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-------GYPCPPYKIIIL 161
P LY+SR+LELNASD+RGI +VR KIK FA + Q G YPCPP+KIIIL
Sbjct: 96 PALYRSRILELNASDERGIGIVREKIKGFARTQLS--QPTGLDSSYFEQYPCPPFKIIIL 153
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFKPL
Sbjct: 154 DEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGE 213
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
R+ I +E LNL+ + L S +GDLRRAITY+Q AARL G
Sbjct: 214 RLKSIAEQENLNLEDGVIEKLISCGEGDLRRAITYMQSAARLVG 257
>gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa]
Length = 366
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 141/238 (59%), Positives = 175/238 (73%), Gaps = 10/238 (4%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R +QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 191
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
+KFRFK L + R+ I EG+ L+ A+ L S+GDLR+AITYLQ AARL
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLM 249
>gi|402225443|gb|EJU05504.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 142/239 (59%), Positives = 177/239 (74%), Gaps = 7/239 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S QPW+EKYRPK +++++ QE V+VL TL +AN PHMLFYGPPGTGKT+T LA+A QL
Sbjct: 24 SLQPWIEKYRPKTMEEISAQEHTVQVLKKTLGSANLPHMLFYGPPGTGKTSTILALARQL 83
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEA 164
FGPEL++SRVLELNASD+RGI VVR KIK FA + GYPCPPYKIIILDEA
Sbjct: 84 FGPELFRSRVLELNASDERGITVVREKIKNFARQTPRAADDEASKGYPCPPYKIIILDEA 143
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT+DAQ ALRR METY+K+TRF +CNY++RIIEPLASRC+KFRF L +R+
Sbjct: 144 DSMTQDAQAALRRVMETYAKITRFCLVCNYVTRIIEPLASRCSKFRFHTLDASSNRARLE 203
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
+I E +++ +STL S S+GDLRR+ITYLQ A RL S+ I +D+ ++G
Sbjct: 204 YIATAEHVSVTPAVISTLISTSEGDLRRSITYLQSAHRLSASTSPPTEIQPRDIQEIAG 262
>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans CBS 6340]
Length = 356
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 138/218 (63%), Positives = 165/218 (75%), Gaps = 2/218 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S+PWVEKYRPK+++DV Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L+
Sbjct: 23 SKPWVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPHMLFYGPPGTGKTSTILALTKELY 82
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GP L KSRVLELNASD+RGI +VR KIK+FA + V S R YPCPPYKIIILDEAD
Sbjct: 83 GPALMKSRVLELNASDERGIAIVRDKIKSFARLTVSKPSQNDREKYPCPPYKIIILDEAD 142
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ+ALRRTME YS VTRF ICNY++RII+PLASRC+KFRFKPL SRV +
Sbjct: 143 SMTADAQSALRRTMENYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDSSNALSRVQY 202
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+ EE L D L + +SQGDLRRAI LQ +++
Sbjct: 203 VAKEERLQYDEHVLEKILDVSQGDLRRAIMLLQSTSKI 240
>gi|307110220|gb|EFN58456.1| hypothetical protein CHLNCDRAFT_48527 [Chlorella variabilis]
Length = 293
Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 134/181 (74%), Positives = 154/181 (85%), Gaps = 2/181 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRP+ + +VAHQEEVV+ L + L + N PH+LFYGPPGTGKTT+ALAI QL
Sbjct: 2 AHQPWVEKYRPRSIGEVAHQEEVVQTLQHALSSGNLPHLLFYGPPGTGKTTSALAIVRQL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FGPEL K+RVLELNASD+RGI VVR KIK FAA +VG G GYPCPP+K+IILDEADS
Sbjct: 62 FGPELCKARVLELNASDERGIGVVRDKIKNFAANSVGQGV--AGYPCPPFKVIILDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQNALRRTMETYS+VTRF FICNY+SRIIEPLASRCAKFRFKPL +V++ R+ HI
Sbjct: 120 MTGDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQGDVINERINHI 179
Query: 227 C 227
C
Sbjct: 180 C 180
>gi|340369406|ref|XP_003383239.1| PREDICTED: replication factor C subunit 4-like [Amphimedon
queenslandica]
Length = 363
Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 140/240 (58%), Positives = 177/240 (73%), Gaps = 2/240 (0%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
+ PV + PWVEKYRPK V DV HQ+EVV VL TL ++ P++LFYGPPGTGKT+
Sbjct: 28 QQGPVEKRKVPWVEKYRPKVVDDVVHQDEVVSVLKKTLTGSDFPNLLFYGPPGTGKTSAI 87
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159
LAIAH+LFG +LYKSR+LELNASDDRGI V+R K+K+FA + S R G PCP +KI+
Sbjct: 88 LAIAHELFGRDLYKSRILELNASDDRGIQVIRDKVKSFARHS-ASASRPDGKPCPSFKIV 146
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEADSMT+ AQ ALRRTME S TRF ICNYISRIIEPL SRC+KFRFKPLS ++
Sbjct: 147 ILDEADSMTQAAQAALRRTMEKESTSTRFCLICNYISRIIEPLTSRCSKFRFKPLSSAIL 206
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSG 278
+R+ +IC EE + + +A+ + S GD+R+AIT+LQ RL G +T KD++ ++G
Sbjct: 207 RTRLEYICREENVKCNEKAIDRIIETSDGDMRKAITFLQSGYRLKGDEEVTEKDIMEIAG 266
>gi|410930528|ref|XP_003978650.1| PREDICTED: replication factor C subunit 4-like [Takifugu rubripes]
Length = 357
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 142/230 (61%), Positives = 171/230 (74%), Gaps = 2/230 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +L+GP
Sbjct: 34 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
LY+ RVLELNASD+RGI V+R K+KTFA + V +G R G CPP+KIIILDEADSMT
Sbjct: 94 VLYRQRVLELNASDERGIQVIREKVKTFAQLTV-AGTRPDGKLCPPFKIIILDEADSMTP 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNYISRIIEPL SRC+KFRFKPL + +R+L IC +
Sbjct: 153 PAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNHIQETRLLDICEK 212
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSG 278
E L E +S L +S+GDLR+AIT+LQ AARL IT + ++G
Sbjct: 213 ENLKYSKEGISALVRVSEGDLRKAITFLQSAARLSIAKEITEHTITEIAG 262
>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
Length = 358
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 144/235 (61%), Positives = 173/235 (73%), Gaps = 4/235 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +
Sbjct: 30 QKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPELY+ RVLELNASD+RGI V+R K+K FA + V +G R G CPP+KIIILDEAD
Sbjct: 90 LYGPELYRQRVLELNASDERGIQVIREKVKNFAQLTV-AGTRTDGKSCPPFKIIILDEAD 148
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRTME S+ TRF ICNY+SRIIEPL SRC+KFRFKPL+ EV R+L
Sbjct: 149 SMTGAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTNEVQQERLLE 208
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLISVSG 278
IC +E L E + L +S+GDLR+AIT LQ AR FG+ IT +I ++G
Sbjct: 209 ICAKENLKYSKEGIDALVKVSEGDLRKAITLLQSTAR-FGAEKEITESLVIEIAG 262
>gi|367020560|ref|XP_003659565.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
gi|347006832|gb|AEO54320.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
Length = 384
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 143/245 (58%), Positives = 179/245 (73%), Gaps = 10/245 (4%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T +S EK +E R +QPWVEKYRPK++ DV Q+ + VL TL+ +N PH
Sbjct: 18 TASTSTEKQTNENAR--------AQPWVEKYRPKKLSDVTAQDHTITVLERTLQASNLPH 69
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 70 MLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTN 129
Query: 145 GQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PL
Sbjct: 130 PPPGYKSRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 189
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
ASRC+KFRFK L + R+ I EG+ +D A+ L S GDLR+AIT+LQ AAR
Sbjct: 190 ASRCSKFRFKSLDQGNARRRLEDIAKLEGVPIDDGAVDALIKCSDGDLRKAITFLQSAAR 249
Query: 263 LFGSS 267
L G+S
Sbjct: 250 LVGAS 254
>gi|336464731|gb|EGO52971.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2508]
Length = 387
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 143/247 (57%), Positives = 179/247 (72%), Gaps = 11/247 (4%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK E R + PWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 20 NPEKQTKETPR--------AHPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFY 71
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQ 146
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + + S
Sbjct: 72 GPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAA 131
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+ YPCPP+K+IILDEADSMT+DAQ+ALRRTME YSK+TRF ICNY++RII+PLASRC
Sbjct: 132 YKARYPCPPFKLIILDEADSMTQDAQSALRRTMEMYSKITRFCLICNYVTRIIDPLASRC 191
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+KFRFK L + R+ I EG+ L+ A+ L S+GDLR+AITYLQ AARL G+
Sbjct: 192 SKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLVGA 251
Query: 267 -SITSKD 272
+ T KD
Sbjct: 252 VAATGKD 258
>gi|340517381|gb|EGR47625.1| predicted protein [Trichoderma reesei QM6a]
Length = 351
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 138/222 (62%), Positives = 170/222 (76%), Gaps = 2/222 (0%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 32 QPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYG 91
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADS 166
PE+ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIIILDEADS
Sbjct: 92 PEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPHYKDKYPCPPFKIIILDEADS 151
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+ I
Sbjct: 152 MTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLESI 211
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268
EG+ L+ A+ TL S+GDLR+AITYLQ AARL I
Sbjct: 212 AEAEGVALEDGAVDTLIKCSEGDLRKAITYLQSAARLIVEDI 253
>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 142/229 (62%), Positives = 170/229 (74%), Gaps = 4/229 (1%)
Query: 38 KRKMAPVLQS--SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
KRK++ + S +QPWVEKYRPK++ DVA QE V VL TL +AN PHMLFYGPPGTGK
Sbjct: 9 KRKISSEVDSEQTQPWVEKYRPKKLDDVAAQEHAVTVLKRTLGSANLPHMLFYGPPGTGK 68
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPC 153
T+T LA+ +LFGP L KSRVLELNASD+RGI++VR K+K FA + V S + YPC
Sbjct: 69 TSTILALTKELFGPNLIKSRVLELNASDERGISIVREKVKNFARLTVSKPSKEDLEKYPC 128
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
PPYKIIILDEADSMT DAQ+ALRRTMETYS +TRF ICNY++RII+PLASRC+KFRFK
Sbjct: 129 PPYKIIILDEADSMTADAQSALRRTMETYSNITRFCLICNYVTRIIDPLASRCSKFRFKA 188
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
L E R+ + EE +N L + IS GDLRRAIT LQ A++
Sbjct: 189 LDETNALDRLKFVAQEENVNYKENVLEKILEISSGDLRRAITLLQSASK 237
>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
Length = 353
Score = 293 bits (749), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 136/216 (62%), Positives = 167/216 (77%), Gaps = 2/216 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
SQPWVE+YRPK + +VA Q+ V VL L +AN PHMLFYGPPGTGKT+T LA+A QL+
Sbjct: 6 SQPWVERYRPKSIDEVASQQHAVNVLRKALTSANLPHMLFYGPPGTGKTSTILALARQLY 65
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
GPEL +SRVLELNASD+RGI+VVR KIK+FA AV + YP PPYKI+ILDEADSM
Sbjct: 66 GPELMRSRVLELNASDERGISVVRDKIKSFARAAVSAPN--PDYPSPPYKIVILDEADSM 123
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ ALRR ME YS++TRF +CNY++RIIEP+ASRC+KFRF+PL +R+LHI
Sbjct: 124 TQDAQGALRRIMEQYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLDVASTEARLLHIA 183
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
EGL L+ + + L S+GD+RR+ITYLQ ARL
Sbjct: 184 QMEGLRLNPDLVPVLIRSSEGDMRRSITYLQSIARL 219
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 293 bits (749), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 140/240 (58%), Positives = 179/240 (74%), Gaps = 6/240 (2%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
++ ++PWVEKYRPK+++DV Q V+VL TLE+AN PHMLFYGPPGTGKT+T LA+
Sbjct: 19 IEQNKPWVEKYRPKKLEDVTAQSHTVKVLKKTLESANLPHMLFYGPPGTGKTSTILALTK 78
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILD 162
+LFGPEL K+RVLELNASD+RGI++VR K+K FA + V + + +PCPPYKIIILD
Sbjct: 79 ELFGPELMKTRVLELNASDERGISIVREKVKNFARLTVTTPSKEDLERHPCPPYKIIILD 138
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFKPL +R
Sbjct: 139 EADSMTADAQSALRRTMETYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNSNALTR 198
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR----LFGSSITSKDLISVSG 278
+ +I +EE L L AL + IS+GDLR+ IT LQ A+ L + IT+ + ++G
Sbjct: 199 LQYIASEESLTLADGALDKILDISEGDLRKGITLLQSVAKAVAYLDNAEITTSQVEELAG 258
>gi|342876153|gb|EGU77811.1| hypothetical protein FOXB_11675 [Fusarium oxysporum Fo5176]
Length = 382
Score = 292 bits (748), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 135/227 (59%), Positives = 175/227 (77%), Gaps = 2/227 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+++N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 32 TQPWVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELY 91
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEAD 165
GP++ KSRVLELNASD+RGI++VR K+K FA + + + + YPCPP+KIIILDEAD
Sbjct: 92 GPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPAPGYKDKYPCPPFKIIILDEAD 151
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 152 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKRRLEE 211
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
I +EG+ L+ A+ L S+GDLR+AIT+LQ AARL ++ K+
Sbjct: 212 IAEKEGVALEDGAVDALIKCSEGDLRKAITFLQSAARLVSANAPDKE 258
>gi|321264422|ref|XP_003196928.1| DNA replication factor (activator 1 subunit) [Cryptococcus gattii
WM276]
gi|317463406|gb|ADV25141.1| DNA replication factor (activator 1 subunit), putative
[Cryptococcus gattii WM276]
Length = 363
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/235 (60%), Positives = 175/235 (74%), Gaps = 9/235 (3%)
Query: 39 RKMAPVLQSS-QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
R +AP+ QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+
Sbjct: 7 RSVAPIKDPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTS 66
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGY 151
T LA+A QLFGP+L+++RVLELNASD+RGI+VVR KIK+FA A V S + Y
Sbjct: 67 TILALARQLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHASGVSSDGKE--Y 124
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
PCPP+K+IILDEADSMT+DAQ+ALRR METYSK+TRF +CNY++RIIEPLASRC+KFRF
Sbjct: 125 PCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRF 184
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
KPL +E +R+ I EG+ D LS + ++ GDLR+AITYLQ A RL S
Sbjct: 185 KPLEQESTRARMEMIAENEGVQTDPGVLSLILELAGGDLRKAITYLQTAQRLHSS 239
>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
Length = 358
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/234 (60%), Positives = 170/234 (72%), Gaps = 2/234 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +
Sbjct: 30 QKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GPELY+ RVLELNASD+RGI V+R K+K FA + V +G R G CPP+KIIILDEAD
Sbjct: 90 LYGPELYRQRVLELNASDERGIQVIREKVKNFAQLTV-AGTRTDGKSCPPFKIIILDEAD 148
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRTME S+ TRF ICNY+SRIIEPL SRC+KFRFKPL+ EV R+L
Sbjct: 149 SMTGAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTNEVQQERLLE 208
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSG 278
IC +E L E + L +S+GDLR+AIT LQ AR IT +I ++G
Sbjct: 209 ICAKENLKYSKEGIDALVKVSEGDLRKAITLLQSTARFSAEKEITESLVIEIAG 262
>gi|358367795|dbj|GAA84413.1| DNA replication factor C subunit Rfc2 [Aspergillus kawachii IFO
4308]
Length = 389
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/223 (60%), Positives = 166/223 (74%), Gaps = 5/223 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 35 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR KIK FA + S + YPCPP+KIIILDE
Sbjct: 95 PSLYRSRILELNASDERGIGIVRDKIKNFARAQLTHSTGLSEEYLAQYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 155 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNSAAGERL 214
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
HI E L L+ + L + S+GD+RRAITY+Q AA+L G+
Sbjct: 215 EHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGA 257
>gi|317027180|ref|XP_001400326.2| replication factor C subunit 2 [Aspergillus niger CBS 513.88]
Length = 389
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/223 (60%), Positives = 167/223 (74%), Gaps = 5/223 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 35 QPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRR-GGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR KIK FA + G G+ YPCPP+KIIILDE
Sbjct: 95 PSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 155 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERL 214
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
HI E L L+ + L + S+GD+RRAITY+Q AA+L G+
Sbjct: 215 EHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGA 257
>gi|374109199|gb|AEY98105.1| FAFR422Wp [Ashbya gossypii FDAG1]
Length = 349
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/220 (62%), Positives = 169/220 (76%), Gaps = 2/220 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWVEKYRP+++ DVA Q + VL TLE+AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 19 EESKPWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKE 78
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGP L KSRVLELNASD+RGI++VR K+K FA + V + + YPCPPYKIIILDE
Sbjct: 79 LFGPSLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDE 138
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFKPL R+
Sbjct: 139 ADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRL 198
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
I +E L+ +A AL + I++GDLR+AIT LQ AA++
Sbjct: 199 EQIAQQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKM 238
>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
Length = 349
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/220 (62%), Positives = 169/220 (76%), Gaps = 2/220 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWVEKYRP+++ DVA Q + VL TLE+AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 19 EESKPWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKE 78
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGP L KSRVLELNASD+RGI++VR K+K FA + V + + YPCPPYKIIILDE
Sbjct: 79 LFGPSLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDE 138
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFKPL R+
Sbjct: 139 ADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRL 198
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
I +E L+ +A AL + I++GDLR+AIT LQ AA++
Sbjct: 199 EQIAQQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKM 238
>gi|225562412|gb|EEH10691.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 394
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 167/224 (74%), Gaps = 5/224 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A L+G
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L R+
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRL 214
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
I E L L + TL S+GDLRRAITYLQ AARL GS+
Sbjct: 215 EEIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQSAARLVGST 258
>gi|240281117|gb|EER44620.1| DNA replication factor C subunit Rfc2 [Ajellomyces capsulatus H143]
gi|325092385|gb|EGC45695.1| activator 1 41 kDa subunit [Ajellomyces capsulatus H88]
Length = 394
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 167/224 (74%), Gaps = 5/224 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A L+G
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L R+
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRL 214
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
I E L L + TL S+GDLRRAITYLQ AARL GS+
Sbjct: 215 EEIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQSAARLVGST 258
>gi|398402105|ref|XP_003853207.1| replication factor C subunit 2 [Zymoseptoria tritici IPO323]
gi|339473089|gb|EGP88183.1| hypothetical protein MYCGRDRAFT_100072 [Zymoseptoria tritici
IPO323]
Length = 408
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/225 (62%), Positives = 171/225 (76%), Gaps = 7/225 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 32 QPWVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYG 91
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---SG----QRRGGYPCPPYKIIIL 161
PEL K+RVLELNASD+RGI++VR K+K FA + + SG + R Y CPPYKIIIL
Sbjct: 92 PELIKTRVLELNASDERGISIVREKVKNFARMQLSNPPSGPAGEEYRKKYSCPPYKIIIL 151
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L E
Sbjct: 152 DEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDEGNAGK 211
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
R+ I E + L+ + TL S+GDLR+AIT+LQ AARL G+
Sbjct: 212 RIEDIARLEAVTLEDGVVETLLRCSEGDLRKAITFLQSAARLVGA 256
>gi|428170599|gb|EKX39523.1| replication factor C, subunit RFC4 [Guillardia theta CCMP2712]
Length = 324
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/225 (60%), Positives = 174/225 (77%), Gaps = 1/225 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVE++RP + VAHQ VV L++ +E+ N PH+LFYGPPGTGKT+T LA+A L+GP
Sbjct: 3 PWVEQHRPSSIAQVAHQRHVVATLSSAVESGNLPHLLFYGPPGTGKTSTILALAKDLYGP 62
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELYKSRVLELNASD+RGI+VVR KIK FA++AV S + YPCPP+K++ILDEAD MT
Sbjct: 63 ELYKSRVLELNASDERGIDVVRNKIKHFASLAVSSSKSSS-YPCPPFKLVILDEADCMTT 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ+ALRRTMET ++VTRF ICNY+SRII P+ASRCAKFRF+P+S EVM R+ I ++
Sbjct: 122 DAQSALRRTMETCTRVTRFCIICNYVSRIISPIASRCAKFRFQPVSTEVMLERLNMIADK 181
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
EG L ++ L +IS GDLRRAIT +Q L G+S+ +D+I
Sbjct: 182 EGFQLPSDVTDALVNISGGDLRRAITMMQNTYILHGNSMKGQDII 226
>gi|226292668|gb|EEH48088.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 139/228 (60%), Positives = 169/228 (74%), Gaps = 5/228 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE + VL TL+ +N PHMLFYGPPGTGKT+T LA++ LFG
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-----VGSGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + V YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L SR+
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRL 214
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK 271
I E L L + TL S+GDLRRAIT++Q AARL GS + SK
Sbjct: 215 EEIARVEKLRLADGCIETLIRCSEGDLRRAITFMQSAARLVGSGLVSK 262
>gi|429856209|gb|ELA31133.1| activator 1 41 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 381
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 135/221 (61%), Positives = 171/221 (77%), Gaps = 2/221 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+
Sbjct: 31 AQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELY 90
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GPE+ KSRVLELNASD+RGI++VR K+K FA + + + + + YP PP+KIIILDEAD
Sbjct: 91 GPEMMKSRVLELNASDERGISIVREKVKDFARMQLTNPTAEYKKRYPVPPFKIIILDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+
Sbjct: 151 SMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLED 210
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
I EG+ L+ A+ L S+GDLR+AIT+LQ AARL G+
Sbjct: 211 IAQNEGVQLEDGAVDALIKCSEGDLRKAITFLQSAARLVGA 251
>gi|260939858|ref|XP_002614229.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
gi|238852123|gb|EEQ41587.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
Length = 339
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 139/216 (64%), Positives = 171/216 (79%), Gaps = 3/216 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DVA Q+ VRVL TL++AN PHMLFYGPPGTGKT+T LA+A QL+GP
Sbjct: 13 PWVEKYRPKKLDDVASQDHAVRVLQKTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LY+SRVLELNASD+RGI++VR KIK FA + V S + YPCPPYKIIILDEADSM
Sbjct: 73 RLYRSRVLELNASDERGISIVRQKIKNFARLTVSNPSPEDLREYPCPPYKIIILDEADSM 132
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME YS VTRF ICNYI+RII+PLASRC+KFRF+ L E SR+ ++
Sbjct: 133 TNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSKFRFRSLDGENALSRLRYVV 192
Query: 228 NEEGLNLDAEA-LSTLSSISQGDLRRAITYLQGAAR 262
+E + L +++ L+ + ++S GDLR+AITYLQ A R
Sbjct: 193 EQEHIPLASDSVLNDILAVSGGDLRKAITYLQSATR 228
>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
Length = 352
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 143/238 (60%), Positives = 173/238 (72%), Gaps = 7/238 (2%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++PWVEKYRP+++ DVA Q+ V VL TL+TAN PHMLFYGPPGTGKT+T LA+ +L+
Sbjct: 21 AKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELY 80
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GP L SRVLELNASD+RGI++VR K+K FA + V S YPCPPYKIIILDEAD
Sbjct: 81 GPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEAD 140
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L SR+
Sbjct: 141 SMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQF 200
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278
I NEE L + L + ISQGDLR+AIT LQ AA++ ++IT K +SG
Sbjct: 201 IANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELSG 258
>gi|367015134|ref|XP_003682066.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
gi|359749728|emb|CCE92855.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
Length = 354
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 146/249 (58%), Positives = 184/249 (73%), Gaps = 8/249 (3%)
Query: 38 KRKMAPV--LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
+RK+AP +SS+PWVEKYRPK++ +VA Q+ V VL TL ++N PHMLFYGPPGTGK
Sbjct: 10 RRKVAPEGESESSKPWVEKYRPKKLDEVAAQDHAVNVLKKTLGSSNLPHMLFYGPPGTGK 69
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPC 153
T+T LA+ +LFGPEL K+RVLELNASD+RGI++VR K+K FA + V S + R +PC
Sbjct: 70 TSTILALTKELFGPELTKTRVLELNASDERGISIVREKVKNFARLTVSKPSAKDRENHPC 129
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
PPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK
Sbjct: 130 PPYKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKS 189
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR---LFGS-SIT 269
L R+ +I EE ++ + L + IS GD+RRAIT LQ A + L GS IT
Sbjct: 190 LDAANALDRLKYIAKEESVDYEEGVLDDILKISSGDMRRAITLLQSAHKRKGLEGSKKIT 249
Query: 270 SKDLISVSG 278
+++ +SG
Sbjct: 250 PQEIEEISG 258
>gi|367042572|ref|XP_003651666.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
gi|346998928|gb|AEO65330.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
Length = 383
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 138/226 (61%), Positives = 170/226 (75%), Gaps = 2/226 (0%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 34 QPWVEKYRPKTLSDVTAQDHTVSVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADS 166
PEL KSRVLELNASD+RGI++VR K+K FA + + + YPCPP+KIIILDEADS
Sbjct: 94 PELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPPGYKARYPCPPFKIIILDEADS 153
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L + R+ I
Sbjct: 154 MTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLEEI 213
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
EG+ ++ A+ L S GDLR+AIT+LQ AARL G+S D
Sbjct: 214 ARLEGVGMEDGAVDALIKCSDGDLRKAITFLQSAARLVGASSAGSD 259
>gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 389
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 139/220 (63%), Positives = 165/220 (75%), Gaps = 5/220 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 33 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 93 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDE 152
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L SR+
Sbjct: 153 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRL 212
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
I E L L + TL S+GDLRRAITYLQ AARL
Sbjct: 213 EKIARVEKLKLADGCVETLIRCSEGDLRRAITYLQSAARL 252
>gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ER-3]
Length = 389
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 139/220 (63%), Positives = 165/220 (75%), Gaps = 5/220 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE V VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 33 QPWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + + R YPCPP+KIIILDE
Sbjct: 93 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDE 152
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L SR+
Sbjct: 153 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRL 212
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
I E L L + TL S+GDLRRAITYLQ AARL
Sbjct: 213 EKIARVEKLKLADGCVETLIRCSEGDLRRAITYLQSAARL 252
>gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 359
Score = 290 bits (741), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 139/225 (61%), Positives = 171/225 (76%), Gaps = 7/225 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V+ QE V VL TL + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 25 QPWVEKYRPKTIDEVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +++RVLELNASD+RGI++VR KIK FA A AV S + YPCPPYKIIILDE
Sbjct: 85 PDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQAVASDGK--SYPCPPYKIIILDE 142
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF PL + SR+
Sbjct: 143 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSKSSFSRL 202
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268
+I E ++ + ++ L S S GDLRRAITYLQ A+RL S+I
Sbjct: 203 SYIATAEHIDTNPAVINALISTSSGDLRRAITYLQSASRLSSSTI 247
>gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 358
Score = 290 bits (741), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 178/237 (75%), Gaps = 3/237 (1%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+ ++ +PWV KYRP+ V DVAHQ+EVVR L +L+ PH+LFYGPPGTGKT+T LAIA
Sbjct: 23 IQKAPEPWVSKYRPRTVDDVAHQDEVVRALKKSLDGGALPHLLFYGPPGTGKTSTILAIA 82
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
L+GP+L K RVLELNASD+RGI +VRTKIK FA+ V + G P +K+IILDE
Sbjct: 83 MDLYGPDLIKDRVLELNASDERGIEIVRTKIKNFASFTV-NNTTVAGKQVPSFKLIILDE 141
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRRT+E SK TRF +CNYI+RIIEPL+SRCAKFRFKPL E M R+
Sbjct: 142 ADSMTQDAQAALRRTIENTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKPLKSEAMGERL 201
Query: 224 LHICNEEGLNLDAEA-LSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSG 278
+I ++EG+NL E+ L + ++SQGD+R+AIT++Q A R + S SIT ++ +SG
Sbjct: 202 KYIADQEGVNLANESTLDAIHTVSQGDMRKAITFMQSAHRFYASKSITDANIYDISG 258
>gi|392573304|gb|EIW66444.1| hypothetical protein TREMEDRAFT_74703 [Tremella mesenterica DSM
1558]
Length = 490
Score = 289 bits (740), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 136/224 (60%), Positives = 172/224 (76%), Gaps = 7/224 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 147 QPWVEKYRPKTIDDVSSQENTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFG 206
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+L++SRVLELNASD+RGI VVR KIKTFA V++ S + YPCPP+K+IILDE
Sbjct: 207 PDLFRSRVLELNASDERGITVVREKIKTFARETPRHVSLSSDGK--TYPCPPFKLIILDE 264
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRR METYS++TRF +CNY++RIIEPLASRC+KFRFKPL++ +R+
Sbjct: 265 ADSMTHDAQSALRRIMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLAQGSSQARM 324
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
I EG++++ L + ++ GDLR+AIT+LQ A RL G++
Sbjct: 325 EMIVKAEGVDIEDGVLDRILELAGGDLRKAITFLQTAQRLHGAT 368
>gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 364
Score = 289 bits (740), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 134/220 (60%), Positives = 167/220 (75%), Gaps = 6/220 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ QE ++VLT T+++ N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 26 PWVEKYRPKSLSDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR--GGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 86 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLANYPCPPYKIIILDEADSM 145
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME Y+ +TRF ICNYI+RII+P+ SRC+KFRFK L+ E R+ +I
Sbjct: 146 TYDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIG 205
Query: 228 NEEGLNLDA----EALSTLSSISQGDLRRAITYLQGAARL 263
+E L D + + L IS GDLR+AITYLQ AA+L
Sbjct: 206 QQENLRFDKGQEDQVIQELLKISGGDLRKAITYLQSAAKL 245
>gi|258564276|ref|XP_002582883.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
gi|237908390|gb|EEP82791.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
Length = 395
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 140/242 (57%), Positives = 171/242 (70%), Gaps = 12/242 (4%)
Query: 49 QPWVEKY--RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
QPWVEKY RPK + DVA Q+ V VL TL+ +N PHMLFYGPPGTGKT+T LA++ L
Sbjct: 36 QPWVEKYFSRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSL 95
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIIL 161
FGP+LY+SR+LELNASD+RGIN+VR K+K FA + + R YPCPP+KIIIL
Sbjct: 96 FGPKLYRSRILELNASDERGINIVRDKVKNFARTQLSHPPPQDSEYRKQYPCPPFKIIIL 155
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ ALRRTME +SK+TRF +CNY++RII+PLASRC+KFRFK L
Sbjct: 156 DEADSMTQDAQAALRRTMERFSKITRFCLVCNYVTRIIDPLASRCSKFRFKTLDGSAAGG 215
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
R+ I E L +D + L S+GDLRRA+TY+Q AARL GS + K SG
Sbjct: 216 RLEEIVKAEKLRVDDGVIDALIRCSEGDLRRAVTYMQSAARLVGSGLAGK-----SGKDE 270
Query: 282 GG 283
GG
Sbjct: 271 GG 272
>gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314]
gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans]
gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1]
Length = 363
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 134/221 (60%), Positives = 168/221 (76%), Gaps = 7/221 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ QE ++VLT T+++ N PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 25 PWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + + + YPCPPYKIIILDEADSM
Sbjct: 85 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADSM 144
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME Y+ +TRF ICNYI+RII+P+ SRC+KFRFK L+ E R+ +I
Sbjct: 145 TNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIG 204
Query: 228 NEEGLNLDAE-----ALSTLSSISQGDLRRAITYLQGAARL 263
+E L ++E + L IS GDLR+AITYLQ AA+L
Sbjct: 205 QQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKL 245
>gi|331215451|ref|XP_003320406.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299396|gb|EFP75987.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 382
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 142/248 (57%), Positives = 176/248 (70%), Gaps = 10/248 (4%)
Query: 39 RKMAPVLQSSQ-------PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
+K AP SS PW+EKYRPK ++ V QE ++L+ L A+ PHMLFYGPP
Sbjct: 14 KKNAPTADSSSSQPPAALPWIEKYRPKSIESVQGQEGTTKILSKALNRADLPHMLFYGPP 73
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
GTGKT+T LA+A LFGPEL KSRVLELNASD+RGI+VVR KIK FA V++ GY
Sbjct: 74 GTGKTSTILALARDLFGPELMKSRVLELNASDERGISVVREKIKNFAKVSISPAT--SGY 131
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
PCP YKIIILDEADSMT+DAQ+ALRR ME YSK+TRF ICNY++RIIEP+ SRC+KFRF
Sbjct: 132 PCPAYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPIVSRCSKFRF 191
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITS 270
KPLS S++ I E + + L +L SIS GDLRR+IT+LQ A++L S I +
Sbjct: 192 KPLSVSGTRSKLTEISTLESIKISDNVLDSLISISAGDLRRSITFLQSASKLATSDEILA 251
Query: 271 KDLISVSG 278
+D+ + G
Sbjct: 252 QDIEEIGG 259
>gi|150865911|ref|XP_001385318.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
gi|149387167|gb|ABN67289.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
Length = 369
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 136/221 (61%), Positives = 170/221 (76%), Gaps = 4/221 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DVA Q+ V+VL T+E+AN PHMLFYGPPGTGKT+T LA++ QL+GP
Sbjct: 24 PWVEKYRPRNLDDVASQDHAVKVLKKTMESANLPHMLFYGPPGTGKTSTILALSKQLYGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + V S + YPCPPYKIIILDEADSM
Sbjct: 84 NLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPSKEDLEKYPCPPYKIIILDEADSM 143
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRRT+E YS +TRF ICNY++RII+PLASRC+KFRF+ L+ E +R+ +I
Sbjct: 144 TNDAQAALRRTIENYSNITRFCLICNYVTRIIDPLASRCSKFRFRLLNNENALNRLKYIA 203
Query: 228 NEEGLNLDAE--ALSTLSSISQGDLRRAITYLQGAARLFGS 266
+E ++LD+ L + IS GDLR+AIT+LQ A +L S
Sbjct: 204 EQEHISLDSNQLVLQEVLRISGGDLRKAITFLQSATKLHKS 244
>gi|401884137|gb|EJT48309.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 2479]
Length = 389
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/234 (58%), Positives = 171/234 (73%), Gaps = 4/234 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 18 QPWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFG 77
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----GSGQRRGGYPCPPYKIIILDEA 164
P+L+KSRVLELNASD+RGI+VVR KIKTFA G YPCPPYK+IILDEA
Sbjct: 78 PDLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLIILDEA 137
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT+DAQ+ALRR METYS++TRF +CNY++RIIEP+ASRC+KFRF+PL + +R+
Sbjct: 138 DSMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQARME 197
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
I EG+ D L + ++ GDLR+AITYLQ A RL +S + ++SG
Sbjct: 198 MIAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQASDPPTPITAMSG 251
>gi|302690912|ref|XP_003035135.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
gi|300108831|gb|EFJ00233.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
Length = 376
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 141/245 (57%), Positives = 176/245 (71%), Gaps = 12/245 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE V VL L + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 29 QPWVEKYRPKTIDDVSAQEHTVSVLQKALTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 88
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI++VR K+K FA A AV S + YPCPPYKIIILDE
Sbjct: 89 PDNFRSRVLELNASDERGISIVREKVKNFARQTPRAQAVASDGKE--YPCPPYKIIILDE 146
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR MET++++TRF +CNY++RIIEPLASRC+KFRF PL ++R+
Sbjct: 147 ADSMTQDAQGALRRIMETHARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSAAARL 206
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
+I E + + + TL S S GDLRRAITYLQ A+RL S+ IT D+ ++G
Sbjct: 207 SYIATNENVAVSPPVIDTLISTSGGDLRRAITYLQSASRLSSSTDPPTPITPVDIQEIAG 266
Query: 279 YPTGG 283
G
Sbjct: 267 VVPDG 271
>gi|406695817|gb|EKC99116.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 8904]
Length = 389
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/234 (58%), Positives = 171/234 (73%), Gaps = 4/234 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 18 QPWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFG 77
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----GSGQRRGGYPCPPYKIIILDEA 164
P+L+KSRVLELNASD+RGI+VVR KIKTFA G YPCPPYK+IILDEA
Sbjct: 78 PDLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLIILDEA 137
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT+DAQ+ALRR METYS++TRF +CNY++RIIEP+ASRC+KFRF+PL + +R+
Sbjct: 138 DSMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQARME 197
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
I EG+ D L + ++ GDLR+AITYLQ A RL +S + ++SG
Sbjct: 198 MIAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQASDPPTPITAMSG 251
>gi|255731300|ref|XP_002550574.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
gi|240131583|gb|EER31142.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
Length = 354
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/217 (63%), Positives = 165/217 (76%), Gaps = 3/217 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D++ QE V+VLT T+ + N PHMLFYGPPGTGKT+T LA+A L+GP
Sbjct: 22 PWVEKYRPKSLSDISSQEHTVKVLTQTITSGNLPHMLFYGPPGTGKTSTILALAKTLYGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
LYKSRVLELNASD+RGI++VR KIK FA + + S + YPCPPYKIIILDEADSM
Sbjct: 82 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPSKEDLEKYPCPPYKIIILDEADSM 141
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETY+ +TRF ICNYI+RII+PL SRC+KFRFK L+ E R+ I
Sbjct: 142 TNDAQSALRRTMETYAGITRFVLICNYITRIIDPLTSRCSKFRFKLLNNENALLRLRFIA 201
Query: 228 NEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARL 263
NEE L + L+ + IS GDLR+ ITYLQ AA+L
Sbjct: 202 NEENLRYTGDDVLNEVLKISAGDLRKGITYLQSAAKL 238
>gi|340992727|gb|EGS23282.1| replication factor C subunit 2-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 384
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 143/255 (56%), Positives = 179/255 (70%), Gaps = 10/255 (3%)
Query: 15 KSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLT 74
K+ Q T +S EK E R +QPWVEKYRPK + DV Q+ V VL
Sbjct: 8 KARRAAQSNGTASTSTEKQTAEHTR--------AQPWVEKYRPKTLNDVTAQDHTVSVLQ 59
Query: 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134
TL+ +N PHMLFYGPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI+++R K+
Sbjct: 60 RTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIIREKV 119
Query: 135 KTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192
K FA + + + YPCPP+K+IILDEADSMT+DAQ+ALRRTMETYSK+TRF IC
Sbjct: 120 KDFARTQLTNPPPGYKTKYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLIC 179
Query: 193 NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252
NY++RII+PLASRC+KFRFK L + R+ I E + L A+ L S+GDLR+
Sbjct: 180 NYVTRIIDPLASRCSKFRFKSLDQGNARKRLEEIAQLENVGLADGAVDALIRCSEGDLRK 239
Query: 253 AITYLQGAARLFGSS 267
AIT+LQ AARL G+S
Sbjct: 240 AITFLQSAARLVGAS 254
>gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 356
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/233 (58%), Positives = 175/233 (75%), Gaps = 2/233 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S+PWVEKYRPK V DVAHQ+EVV VL +L A+ P++LFYGPPGTGKT+T LA++ +L
Sbjct: 30 ASKPWVEKYRPKCVDDVAHQDEVVAVLRKSLTGADLPNLLFYGPPGTGKTSTILALSREL 89
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FG +L K RVLELN+SD+RGINV+R K+K FA + S R G CPPYKIIILDEADS
Sbjct: 90 FGFQLMKERVLELNSSDERGINVIREKVKNFAQLTANS-LREDGKKCPPYKIIILDEADS 148
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+ AQ ALRRTME SK TRF ICNY++RII P+ SRC++FRFK LS E R+ +
Sbjct: 149 MTKAAQEALRRTMEKSSKTTRFCLICNYVTRIIPPIISRCSQFRFKSLSTEDQKKRLWMV 208
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSG 278
C +EG+ + +A+S L S+GDLR+A+TYLQ A RL G+ I KD++ ++G
Sbjct: 209 CEKEGVKISQDAMSCLVKCSEGDLRKAMTYLQTAHRLKGAEGIDEKDVLEITG 261
>gi|427779307|gb|JAA55105.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 392
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 148/275 (53%), Positives = 187/275 (68%), Gaps = 19/275 (6%)
Query: 8 IHKSGKNKSPNFT---QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA 64
+ K K +PN +K T+ P+K PV PWVEKYRPK V DVA
Sbjct: 35 VEKXLKTANPNLILPKEKTKETKQVPKK----------PV---QIPWVEKYRPKTVDDVA 81
Query: 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124
HQ+EVV VL +L+ A+ P++LFYGPPGTGKT+T LA+A +LFG ++YKSR+LELNASD+
Sbjct: 82 HQDEVVSVLKKSLQGADLPNLLFYGPPGTGKTSTILALARELFG-DMYKSRILELNASDE 140
Query: 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184
RGI VVR KIKTF+ + SG G PCPPYKI+ILDEADSMT AQ ALRRTME +K
Sbjct: 141 RGIQVVREKIKTFSQLT-ASGTGPDGKPCPPYKIVILDEADSMTASAQAALRRTMEKETK 199
Query: 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244
TRF ICNYISRII+PL SRC+KFRFKPL ++++ R+ +IC E + D + L L
Sbjct: 200 TTRFCLICNYISRIIDPLTSRCSKFRFKPLPKDILLERLRNICTAEAVQCDDQVLDFLMD 259
Query: 245 ISQGDLRRAITYLQGAARL-FGSSITSKDLISVSG 278
+GD+RRAIT Q +RL +TS+D+ V+G
Sbjct: 260 ACEGDMRRAITLFQSVSRLKCNEQVTSEDVAEVAG 294
>gi|367007401|ref|XP_003688430.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
gi|357526739|emb|CCE65996.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/243 (58%), Positives = 175/243 (72%), Gaps = 6/243 (2%)
Query: 38 KRKMAPV--LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
KRK+ P L +++PWVEKYRP+ + DVA Q+ V VL TL +AN PHMLFYGPPGTGK
Sbjct: 11 KRKIQPEGDLDNNKPWVEKYRPRNLDDVAAQDHAVAVLKRTLGSANLPHMLFYGPPGTGK 70
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPC 153
T+T LA+ +LFGP+L KSRVLELNASD+RGI++VR K+K FA + V S YPC
Sbjct: 71 TSTILALTKELFGPQLVKSRVLELNASDERGISIVREKVKNFARLTVSKPSKDDLENYPC 130
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
PPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK
Sbjct: 131 PPYKIIILDEADSMTADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKA 190
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
L E R+ ++ +E + L + IS GDLRRAIT LQ ++ S+ D+
Sbjct: 191 LDETNALDRLKYVATQESTKYEEGTLEKILQISAGDLRRAITLLQSVSK--SSTFNKSDM 248
Query: 274 ISV 276
I++
Sbjct: 249 ITI 251
>gi|58270226|ref|XP_572269.1| activator 1 41 kda subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134117646|ref|XP_772457.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255071|gb|EAL17810.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228527|gb|AAW44962.1| activator 1 41 kda subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 363
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 170/224 (75%), Gaps = 8/224 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 18 QPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFG 77
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA------AVAVGSGQRRGGYPCPPYKIIILD 162
P+L+++RVLELNASD+RGI+VVR KIK+FA A AV S + YPCPP+K+IILD
Sbjct: 78 PDLFRARVLELNASDERGISVVREKIKSFARETPRHAPAVSSDGKE--YPCPPFKLIILD 135
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT+DAQ+ALRR METYSK+TRF +CNY++RIIEPLASRC+KFRFKPL + +R
Sbjct: 136 EADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQGSTRAR 195
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+ I EG+ D +S + ++ GDLR+AITYLQ A RL S
Sbjct: 196 MEMIAENEGVQTDPGVISLILELAGGDLRKAITYLQTAQRLHSS 239
>gi|67525023|ref|XP_660573.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
gi|40744364|gb|EAA63540.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
Length = 754
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 137/230 (59%), Positives = 166/230 (72%), Gaps = 6/230 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLF 107
QPWVEKYRPK + DVA Q+ + T + A PHMLFYGPPGTGKT+T LA+A LF
Sbjct: 400 QPWVEKYRPKTLDDVAAQDHTTKTWARTNQAALQLPHMLFYGPPGTGKTSTILALAKSLF 459
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILD 162
GP LY+SR+LELNASD+RGI +VR K+K FA V + + YPCPP+KIIILD
Sbjct: 460 GPALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILD 519
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFKPL R
Sbjct: 520 EADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDR 579
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
+ I E L+L+ + L S S GDLRRAITYLQ AARL G++ +KD
Sbjct: 580 LAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARLVGAAKAAKD 629
>gi|449299144|gb|EMC95158.1| hypothetical protein BAUCODRAFT_35150 [Baudoinia compniacensis UAMH
10762]
Length = 411
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/225 (60%), Positives = 169/225 (75%), Gaps = 7/225 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP+ + DV Q+ V VL L+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 35 QPWVEKYRPRSLDDVTAQDHTVTVLRRMLQSSNLPHMLFYGPPGTGKTSTVLALAKQLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-------GQRRGGYPCPPYKIIIL 161
PEL KSRVLELNASD+RGI++VR K+K FA + + + + R YPCPPYKI++L
Sbjct: 95 PELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKIVVL 154
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASRC+KFRFK L E
Sbjct: 155 DEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDEANAGK 214
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
R+ I E + L + TL S+GDLR+AIT+LQ AA+L G+
Sbjct: 215 RLEDIAKLENVRLQDGVIETLLRCSEGDLRKAITFLQSAAKLVGA 259
>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 395
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 140/242 (57%), Positives = 176/242 (72%), Gaps = 10/242 (4%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
T S +K +E R +QPWVEKYRPK + DV Q+ V VL TL+ +N PHM
Sbjct: 18 TASKNDKQTNETSR--------AQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHM 69
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
LFYGPPGTGKT+T LA+A +L+GPE KSRVLELNASD+RGI++VR K+K FA + + +
Sbjct: 70 LFYGPPGTGKTSTILALAKELYGPEFVKSRVLELNASDERGISIVREKVKDFARMQLTNP 129
Query: 146 Q--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
R YPCPP+K+I+LDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLA
Sbjct: 130 PPGYRDRYPCPPFKLIVLDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLA 189
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
SRC+KFRFK L + +RV I E ++L A+ L S+GDLR+AIT+LQ AARL
Sbjct: 190 SRCSKFRFKSLDQGNARARVEDIATREHVSLAPGAVDALIRCSEGDLRKAITFLQSAARL 249
Query: 264 FG 265
G
Sbjct: 250 VG 251
>gi|405124075|gb|AFR98837.1| activator 1 41 kda subunit [Cryptococcus neoformans var. grubii
H99]
Length = 363
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 139/233 (59%), Positives = 172/233 (73%), Gaps = 5/233 (2%)
Query: 39 RKMAPVLQSS-QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
R+ AP+ QPWVEKYRPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+
Sbjct: 7 RQAAPIKDPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTS 66
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPC 153
T LA+A QLFGP+L+++RVLELNASD+RGI+VVR KIK+FA A G YPC
Sbjct: 67 TILALARQLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHAPGISSDGKEYPC 126
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
PP+K+IILDEADSMT+DAQ+ALRR METYSK+TRF +CNY++RIIEPLASRC+KFRFKP
Sbjct: 127 PPFKLIILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKP 186
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
L + +R+ I EG+ D +S + ++ GDLR+AITYLQ A RL S
Sbjct: 187 LEQGSTRARMEMIAENEGVQTDPGVISLILELAGGDLRKAITYLQTAQRLHSS 239
>gi|410079477|ref|XP_003957319.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
gi|372463905|emb|CCF58184.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
Length = 350
Score = 287 bits (734), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 136/219 (62%), Positives = 166/219 (75%), Gaps = 2/219 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWVEKYRPK++++V Q+ V VL TLE+AN PHMLFYGPPGTGKT+T LA+ +
Sbjct: 20 EQSKPWVEKYRPKKLEEVTAQDHAVTVLKKTLESANLPHMLFYGPPGTGKTSTILALTKE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGPEL K+RVLELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDE
Sbjct: 80 LFGPELAKTRVLELNASDERGISIVREKVKNFARLTVSKSSKEDLEKYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNYI+RII+PLASRC+KFRFK L R+
Sbjct: 140 ADSMTADAQSALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKFRFKSLEATNALDRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
+I +E + + L + ISQGDLRRAIT LQ A++
Sbjct: 200 KYISEKESVQYEEGTLEKILEISQGDLRRAITLLQSASK 238
>gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis
carolinensis]
Length = 364
Score = 286 bits (733), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 137/230 (59%), Positives = 173/230 (75%), Gaps = 2/230 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +VA QEEVV VL L+ A+ P++LFYGPPGTGKT+T LA A +LFG
Sbjct: 40 PWVEKYRPKCMDEVAFQEEVVAVLKKCLQGADLPNLLFYGPPGTGKTSTILAAARELFGT 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI V+R K+K FA + V SG R G CPP+KI+ILDEADSMT
Sbjct: 100 ELFRQRVLELNASDERGIQVIREKVKRFAQLTV-SGSRSDGKLCPPFKIVILDEADSMTS 158
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNYISRIIEP+ SRC+KFRFKPLS+++ R++ + +
Sbjct: 159 AAQAALRRTMEKESKTTRFCLICNYISRIIEPITSRCSKFRFKPLSDKIQRQRLVEVAEK 218
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278
E + + +EA+S L +S+GDLR+AIT LQ A RL G +T K + ++G
Sbjct: 219 ENVAVSSEAISYLVHVSEGDLRKAITLLQSATRLMGGKEVTEKIVTEIAG 268
>gi|72072160|ref|XP_787339.1| PREDICTED: replication factor C subunit 4-like isoform 2
[Strongylocentrotus purpuratus]
gi|390359382|ref|XP_003729467.1| PREDICTED: replication factor C subunit 4-like isoform 1
[Strongylocentrotus purpuratus]
Length = 355
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 138/234 (58%), Positives = 173/234 (73%), Gaps = 2/234 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP+ V +VA+Q+EVV VL +L+ A+ P+MLFYGPPGTGKT+T LA + +
Sbjct: 25 QRQVPWVEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTSTILAASRE 84
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG ++Y+SRVLELNASD+RGI VVR K+K FA A G G R G PCPP+KIIILDEAD
Sbjct: 85 LFGTDMYRSRVLELNASDERGIQVVRDKVKKFAQTAAG-GIRPDGKPCPPFKIIILDEAD 143
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRTME SK T+F ICNYISRIIEPL SRC+KFRFKPLS+ + ++
Sbjct: 144 SMTYDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGKKLRE 203
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSG 278
IC E +N EAL + +S+GD+R++IT+LQ RL I +D+ ++G
Sbjct: 204 ICEAENINCGEEALEAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAG 257
>gi|388583076|gb|EIM23379.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/236 (59%), Positives = 172/236 (72%), Gaps = 6/236 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S +PWVEKYRP+ ++DVA Q+ +RVL L AN PHMLFYGPPGTGKT+T LA++ Q
Sbjct: 4 ESIKPWVEKYRPRTIEDVAAQDHTIRVLKKQLGNANLPHMLFYGPPGTGKTSTILALSRQ 63
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG +L KSRVLELNASD+RGINVVR KIK FA A + P YKIIILDEAD
Sbjct: 64 LFGQDLVKSRVLELNASDERGINVVREKIKNFAKQAPKAS---TSASVPAYKIIILDEAD 120
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK TRF +CNY++RIIEP+ASRC+KFRFKPL E +R+ +
Sbjct: 121 SMTQDAQSALRRTMETYSKSTRFCLVCNYVTRIIEPVASRCSKFRFKPLDESDSKARLEY 180
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278
I EE + L+ + L + GDLR+AITYLQ AARL S+IT + ++G
Sbjct: 181 IAQEENIPLNEGVIDALIDNTHGDLRQAITYLQSAARLHQASNSAITVDTITEIAG 236
>gi|452825574|gb|EME32570.1| replication factor C [Galdieria sulphuraria]
Length = 354
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 137/238 (57%), Positives = 177/238 (74%), Gaps = 2/238 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP L PWVEKYRP ++KD+ +Q+E ++L N L + N PH LFYGPPGTGKT+ AL
Sbjct: 1 MAPSLPEELPWVEKYRPNKIKDLVYQQEAAQLLHNCLTSGNLPHCLFYGPPGTGKTSAAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A +LF PE+YK RVLELNASD+RGI VVR KIK FA +V S Q G +PCPP+KIII
Sbjct: 61 AFCKELFPPEIYKDRVLELNASDERGIKVVREKIKRFAQGSVSSAQFEG-FPCPPFKIII 119
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD++T DAQ ALRRTME +SK+TRFF +CNY++R+I+PLASRCAKFRF+ L ++
Sbjct: 120 LDEADAITPDAQTALRRTMEQFSKITRFFLLCNYVTRVIDPLASRCAKFRFRSLPMQLQV 179
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+ +I ++EG+ + + L TL+S GDLRRAI L+ A L GS+IT + + SV+
Sbjct: 180 DRLRYIVDQEGIMVSDDILQTLTSCCNGDLRRAIMTLESAYCLARGSNITDEIINSVT 237
>gi|336367142|gb|EGN95487.1| hypothetical protein SERLA73DRAFT_60040 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379860|gb|EGO21014.1| hypothetical protein SERLADRAFT_372826 [Serpula lacrymans var.
lacrymans S7.9]
Length = 372
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 142/240 (59%), Positives = 177/240 (73%), Gaps = 12/240 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV+ QE V VL TL + N PHMLFYGPPGTGKT+T LA++ QLFG
Sbjct: 22 QPWVEKYRPKTIDDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFG 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ +++RVLELNASD+RGI++VR KIK FA A V S + YPCPPYKIIILDE
Sbjct: 82 PDNFRNRVLELNASDERGISIVREKIKNFARQTPRAQMVASDGK--TYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ ALRR METY+++TRF +CNY++RIIEPLASRC+KFRF PL SSR+
Sbjct: 140 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSTSSRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSG 278
I E + L+ + +S L + S GDLRR+ITYLQ A+RL S+ IT+ D+ ++G
Sbjct: 200 SQIATAEHVVLEPDVISALINTSSGDLRRSITYLQSASRLSASTNPPTPITAGDIQEIAG 259
>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
Length = 344
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 166/233 (71%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S+PWV KYRPK + DV++Q++VV L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 8 ERSEPWVSKYRPKTMDDVSYQDDVVSALKKSLSTGNLPHLLFYGPPGTGKTSTILAIAMD 67
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI +VRTKIK FA V G +K+IILDEAD
Sbjct: 68 IYGPELIKQRVLELNASDERGIEIVRTKIKNFAGFTVNKTVSNGNNAGATFKLIILDEAD 127
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL E R+ +
Sbjct: 128 SMTSDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDSEATIERLKY 187
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
I +EG+ + ++S GD+R+AITYLQ A R +G+ +T + ++SG
Sbjct: 188 ISIQEGIKCTDSVYQAIQTVSDGDMRKAITYLQSAFRFYGNKLTEDTIYNISG 240
>gi|254568858|ref|XP_002491539.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|238031336|emb|CAY69259.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328351952|emb|CCA38351.1| Replication factor C subunit 2 [Komagataella pastoris CBS 7435]
Length = 324
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 129/220 (58%), Positives = 171/220 (77%), Gaps = 2/220 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK++ +V+ Q V+RVL+N L++AN PH+LFYGPPGTGKT+T LA+A +LF
Sbjct: 2 STPWVEKYRPKKLDEVSAQSNVIRVLSNQLKSANMPHLLFYGPPGTGKTSTILAMARELF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEAD 165
GP+L KSRVLELNASD+RGI++VR K+K FA ++V + + + YPCPPYK+IILDEAD
Sbjct: 62 GPQLMKSRVLELNASDERGISIVRDKVKNFARLSVTNPTPEDKENYPCPPYKLIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ+ALRR ME YS +TRF ICNYI+RII+P+ SRC+KFRF PL+ + +
Sbjct: 122 SMTFDAQSALRRIMENYSHITRFCIICNYITRIIDPITSRCSKFRFSPLNSANSLATLKM 181
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
I E L++D ++L+ + IS GDLR++I +LQ +LFG
Sbjct: 182 ISQSEELDIDDDSLTQILDISNGDLRKSINFLQTGHKLFG 221
>gi|365759876|gb|EHN01638.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 172/239 (71%), Gaps = 7/239 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V+VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278
+I +E + D+ L + IS GDLRR IT LQ A++ G +ITS + ++G
Sbjct: 203 YISEQENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQYLGDGKNITSTQVEELAG 261
>gi|401837599|gb|EJT41507.1| RFC2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 353
Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 172/239 (71%), Gaps = 7/239 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V+VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278
+I +E + D+ L + IS GDLRR IT LQ A++ G +ITS + ++G
Sbjct: 203 YISEQENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQYLGDGKNITSTQVEELAG 261
>gi|396471841|ref|XP_003838965.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
gi|312215534|emb|CBX95486.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
Length = 434
Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 174/247 (70%), Gaps = 29/247 (11%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA------------------------AVAVGS 144
P+L KSRVLELNASD+RGI++VR K+K FA A G+
Sbjct: 93 PDLLKSRVLELNASDERGISIVRQKVKDFARQQLSLAPSYSVMVEDKAAAGRGEDEAAGT 152
Query: 145 GQR-----RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
G++ R YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS+VTRF +CNY++RII
Sbjct: 153 GEKKMARYRDVYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRVTRFCLVCNYVTRII 212
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+PLASRC+KFRFK L + RV I EG+ LD L +++GDLR+AIT+LQ
Sbjct: 213 DPLASRCSKFRFKSLDQGNAVRRVADIARLEGVALDPGVAEELVRVAEGDLRKAITFLQS 272
Query: 260 AARLFGS 266
ARL G+
Sbjct: 273 GARLVGA 279
>gi|190360157|sp|P0C7N7.1|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2
Length = 411
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 137/240 (57%), Positives = 177/240 (73%), Gaps = 18/240 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVA----VGSGQRRGG---------- 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA V + + GG
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFR
Sbjct: 153 YSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
FK L + RV I E + LDA L ++ GDLR+AIT+LQ AARL G++ T+
Sbjct: 213 FKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTA 272
>gi|346471367|gb|AEO35528.1| hypothetical protein [Amblyomma maculatum]
Length = 358
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/233 (60%), Positives = 172/233 (73%), Gaps = 9/233 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V DVAHQ+EVV VL +L+ A+ P++LFYGPPGTGKT+T LA+A +LFG
Sbjct: 33 PWVEKYRPKTVDDVAHQDEVVSVLKKSLQGADLPNLLFYGPPGTGKTSTILALARELFG- 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFA---AVAVGSGQRRGGYPCPPYKIIILDEADS 166
++YKSR+LELNASD+RGI VVR KIKTF+ A AVG G PCPP+KI+ILDEADS
Sbjct: 92 DMYKSRILELNASDERGIQVVREKIKTFSQLTAHAVGPD----GKPCPPFKIVILDEADS 147
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT AQ ALRRTME +K TRF ICNYISRII+PL SRC+KFRFKPL +EV+ R+ I
Sbjct: 148 MTASAQAALRRTMEKETKSTRFCLICNYISRIIDPLTSRCSKFRFKPLPKEVLLERLRSI 207
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSG 278
C EG+ + E L L +GD+RRAIT Q +RL +TS D+ V+G
Sbjct: 208 CTAEGVQCEDEVLDFLMDACEGDMRRAITLFQSVSRLKCDEPVTSHDVAEVAG 260
>gi|171680165|ref|XP_001905028.1| hypothetical protein [Podospora anserina S mat+]
gi|170939709|emb|CAP64935.1| unnamed protein product [Podospora anserina S mat+]
Length = 405
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 138/241 (57%), Positives = 171/241 (70%), Gaps = 23/241 (9%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC--------------------PHMLFY 88
QPWVEKYRPK + DV Q+ + VL TL+ +N PHMLFY
Sbjct: 34 QPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNVCSPPSPPSSFPTNMTLSPQLPHMLFY 93
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA---VGSG 145
GPPGTGKT+T LA+A +L+GPEL KSRVLELNASD+RGI++VR K+K FA + V S
Sbjct: 94 GPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNVSSA 153
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PLASR
Sbjct: 154 AYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASR 213
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
C+KFRFK L + R+ I +E + LD A+ L + ++GDLR+AITYLQ AARL G
Sbjct: 214 CSKFRFKSLDQGNAKKRLEEIAEKEKVGLDEGAVEGLINCAEGDLRKAITYLQSAARLVG 273
Query: 266 S 266
+
Sbjct: 274 A 274
>gi|432099509|gb|ELK28652.1| Replication factor C subunit 4 [Myotis davidii]
Length = 427
Score = 283 bits (724), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 151/289 (52%), Positives = 184/289 (63%), Gaps = 41/289 (14%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 63 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 117
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR---------- 148
LA A +LFG EL++ RVLELNASD+RGI VVR K+K FA + V SG R
Sbjct: 118 ILAAARELFGHELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSECIIQEPQLP 176
Query: 149 -----------------------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185
GG PCPP+KI+ILDEADSMT AQ ALRRTME SK
Sbjct: 177 SHCNLAAPTLSFCPLVIIVRQSYGGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKT 236
Query: 186 TRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI 245
TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I ++E + + E LS L +
Sbjct: 237 TRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGLSCLVQV 296
Query: 246 SQGDLRRAITYLQGAARLFGS-SITSKDLISVSGY-PTGGSGGAFRGVQ 292
S+GDLR+AIT+LQ A RL G +T K + ++G P G F Q
Sbjct: 297 SEGDLRKAITFLQSATRLTGGKEVTDKVITDIAGVIPVETVDGVFAACQ 345
>gi|401625031|gb|EJS43057.1| rfc2p [Saccharomyces arboricola H-6]
Length = 353
Score = 283 bits (724), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 171/239 (71%), Gaps = 7/239 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVE+YRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVERYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GPEL KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKALDANNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278
+I +E + DA L + IS GDLRR IT LQ A++ G +ITS + ++G
Sbjct: 203 YISEQENVKCDAGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAG 261
>gi|295672510|ref|XP_002796801.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282173|gb|EEH37739.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 139/237 (58%), Positives = 169/237 (71%), Gaps = 14/237 (5%)
Query: 49 QPWVEKY---------RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
QPWVEKY RPK + DVA QE + VL TL+ +N PHMLFYGPPGTGKT+T
Sbjct: 35 QPWVEKYGIANPGIPSRPKTLDDVASQEHTITVLQRTLQASNLPHMLFYGPPGTGKTSTI 94
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-----VGSGQRRGGYPCP 154
LA++ LFGP+LY+SR+LELNASD+RGI++VR KIK FA + V YPCP
Sbjct: 95 LALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYPCP 154
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
P+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L
Sbjct: 155 PFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKAL 214
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK 271
SR+ I E L L + TL S+GDLRRAIT++Q AARL GS + SK
Sbjct: 215 DGSAAGSRLEEIARVEKLRLADGCIETLIRCSEGDLRRAITFMQSAARLVGSGLVSK 271
>gi|451849989|gb|EMD63292.1| hypothetical protein COCSADRAFT_38154 [Cochliobolus sativus ND90Pr]
Length = 416
Score = 283 bits (723), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 135/237 (56%), Positives = 171/237 (72%), Gaps = 19/237 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ ++VL+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA------------AVAVGSGQRRGG------ 150
PEL KSRVLELNASD+RGI++VR K+K FA V SG GG
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTGEGGMVRYRD 152
Query: 151 -YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KF
Sbjct: 153 KYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKF 212
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
RFK L + RV I E + LD L ++ GDLR+AIT+LQ AARL G+
Sbjct: 213 RFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQSAARLVGA 269
>gi|343113485|gb|AEL87701.1| replication factor C 4 [Strongylocentrotus nudus]
Length = 355
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/234 (58%), Positives = 172/234 (73%), Gaps = 2/234 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP+ V +VA+Q+EVV VL +L+ A+ P+MLFYGPPGTGKT+T LA + +
Sbjct: 25 QRQVPWVEKYRPRTVDEVAYQDEVVAVLKKSLQGADLPNMLFYGPPGTGKTSTILAASRE 84
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG ++Y+SRVLELNASD+RGI VVR K+K FA A G G R G P PP+KIIILDEAD
Sbjct: 85 LFGADMYRSRVLELNASDERGIQVVRDKVKKFAQTAAG-GIRPDGKPRPPFKIIILDEAD 143
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRTME SK T+F ICNYISRIIEPL SRC+KFRFKPLS+ + ++
Sbjct: 144 SMTNDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGKKLRE 203
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSG 278
IC E +N EAL + +S+GD+R++IT+LQ RL I +D+ ++G
Sbjct: 204 ICEVENINCGEEALDAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAG 257
>gi|403216588|emb|CCK71084.1| hypothetical protein KNAG_0G00260 [Kazachstania naganishii CBS
8797]
Length = 350
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/239 (56%), Positives = 174/239 (72%), Gaps = 6/239 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWVEKYRPK + +V Q+ V VL TL++A+ PHMLFYGPPGTGKT+T LA+ +
Sbjct: 20 EENKPWVEKYRPKNLDEVTAQDHAVNVLKKTLKSADLPHMLFYGPPGTGKTSTILALTKE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
LFGPEL KSRVLELNASD+RGI++VR K+K FA + V + YPCPP+KIIILDE
Sbjct: 80 LFGPELTKSRVLELNASDERGISIVREKVKNFARLTVSKPSKNDLEKYPCPPFKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTMETYS VTRF ICNYI+RII+PLASRC+KFRFK L E R+
Sbjct: 140 ADSMTADAQSALRRTMETYSSVTRFCLICNYITRIIDPLASRCSKFRFKSLDESNAMDRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----SSITSKDLISVSG 278
++ +E + + AL + +S GDLR+AIT LQ +++L +TSK + ++G
Sbjct: 200 QYVAKQESVICEDGALEKILIVSSGDLRKAITLLQSSSKLRNYTGTDKVTSKQVEELAG 258
>gi|440640436|gb|ELR10355.1| hypothetical protein GMDG_04737 [Geomyces destructans 20631-21]
Length = 389
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 169/222 (76%), Gaps = 3/222 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DV Q+ + VL TL+++N PHML+YGPPGTGKT+T LA++ L+G
Sbjct: 35 QPWVEKYRPKSLADVTAQDHTITVLQRTLQSSNLPHMLYYGPPGTGKTSTILALSRSLYG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---SGQRRGGYPCPPYKIIILDEAD 165
P L+ SRVLELNASD+RGI++VR K+K FA + + G + Y CPPYKIIILDEAD
Sbjct: 95 PALFHSRVLELNASDERGISIVRKKVKDFARMQLSRPPGGNYQEQYLCPPYKIIILDEAD 154
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ+ALRRTMETYSK+TRF +CNY++RII+PLASRC+KFRFK + E +R+
Sbjct: 155 SMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKRMGEGQAGTRLRE 214
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
I +E + ++ + L S+GDLR+AIT+LQ AARL G++
Sbjct: 215 IAEKEKVPMEEGVVEALIKHSEGDLRKAITFLQSAARLVGAA 256
>gi|326482375|gb|EGE06385.1| DNA replication factor C subunit Rfc2 [Trichophyton equinum CBS
127.97]
Length = 386
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 132/227 (58%), Positives = 165/227 (72%), Gaps = 6/227 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DV Q+ + VL L +N PHMLFYG PGTGKT+T LA++
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTSTILAMSKS 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG----SGQRRGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R YPCPP+KIIIL
Sbjct: 90 LFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYRSQYPCPPFKIIIL 149
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+P+ASRC+KFRFK L S
Sbjct: 150 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQS 209
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGS 266
R++ I E L+L+ + TL S GDLR+AIT++Q +ARL +GS
Sbjct: 210 RLIEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGS 256
>gi|255944955|ref|XP_002563245.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587980|emb|CAP86049.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 388
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 131/217 (60%), Positives = 159/217 (73%), Gaps = 5/217 (2%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115
RPK + DVA Q+ VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFGP LY+SR
Sbjct: 37 RPKSLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSR 96
Query: 116 VLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRRGGYPCPPYKIIILDEADSMTED 170
+LELNASD+RGI +VR K+K FA + R YPCPP+KIIILDEADSMT+D
Sbjct: 97 ILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEADSMTQD 156
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTMETYS++TRF +CNY++RIIEPLASRC+KFRFK L R+ +I +E
Sbjct: 157 AQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNSAAGERIGNIAEQE 216
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
GL L+ + TL GDLRRAITYLQ AARL G++
Sbjct: 217 GLQLEDGVIDTLIRCGDGDLRRAITYLQSAARLVGAT 253
>gi|403270485|ref|XP_003927208.1| PREDICTED: uncharacterized protein LOC101046302 [Saimiri
boliviensis boliviensis]
Length = 766
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 141/239 (58%), Positives = 173/239 (72%), Gaps = 3/239 (1%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115
RPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ R
Sbjct: 448 RPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLR 507
Query: 116 VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
VLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT AQ AL
Sbjct: 508 VLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAAL 566
Query: 176 RRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD 235
RRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I +E + +
Sbjct: 567 RRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKIS 626
Query: 236 AEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSGY-PTGGSGGAFRGVQ 292
E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++G P G F Q
Sbjct: 627 DEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKINGVFAACQ 685
>gi|296807688|ref|XP_002844229.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
gi|238843712|gb|EEQ33374.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
Length = 390
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 132/227 (58%), Positives = 166/227 (73%), Gaps = 6/227 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DVA Q+ + VL L +N PHMLFYG PGTGKT+T LA++
Sbjct: 31 QQTQPWVEKYRPKTLDDVAAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTSTILAMSKS 90
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----GSGQRRGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGI++VR KIK FA + + R YPCPP+KI+IL
Sbjct: 91 LFGPALVRSRVLELNASDERGISIVREKIKDFARMHLSQPPADPAYRSQYPCPPFKIVIL 150
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+P+ASRC+KFRFK L S
Sbjct: 151 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAARS 210
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGS 266
R++ I E L+L+ + TL S GDLR+AIT++Q +ARL FGS
Sbjct: 211 RLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARFGS 257
>gi|213403013|ref|XP_002172279.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
gi|212000326|gb|EEB05986.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
Length = 340
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 127/230 (55%), Positives = 175/230 (76%), Gaps = 3/230 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVE YRPK + +V+ Q+ ++VL T+ + N PHMLFYG PGTGKT+T LA+A +LFGP
Sbjct: 21 PWVEHYRPKSLDEVSSQDMTIQVLKKTMMSNNLPHMLFYGSPGTGKTSTILALARELFGP 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+L KSRVLELNASD+RGI+++R K+K FA +AV + GYPCPP+KI+ILDEADSMT+
Sbjct: 81 QLVKSRVLELNASDERGISIIREKVKNFARIAVNNTV--NGYPCPPFKIVILDEADSMTQ 138
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRRTME +++TRF +CNY++RII+PLASRC+K+RFKPL + ++ R+ I +
Sbjct: 139 DAQAALRRTMEATARITRFCLVCNYVTRIIDPLASRCSKYRFKPLDAQDIAKRLEFIAAD 198
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278
+ + L+ + L S+S GD+R+AIT+LQ AA L G+ +T +I +SG
Sbjct: 199 QTVALEPGVIDALVSVSGGDMRKAITFLQSAATLHQGTPVTVNTVIEISG 248
>gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 357
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 134/233 (57%), Positives = 171/233 (73%), Gaps = 3/233 (1%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWV KYRPK V +V+HQ+EVV+ L +LET N PH+LFYGPPGTGKT+T LA+A LFG
Sbjct: 15 EPWVNKYRPKTVDEVSHQDEVVKALKRSLETGNLPHLLFYGPPGTGKTSTILAVAMDLFG 74
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RGGYPCPPYKIIILDEADSM 167
PELYK RVLELNASD+RGI VVRTKIK FA+ +V G P +K+I+LDEADSM
Sbjct: 75 PELYKDRVLELNASDERGIEVVRTKIKNFASFSVSQNNTLTNGKPAAAFKLIVLDEADSM 134
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E SK TRF +CNYI+RIIEPL+SRCAKFRFK L++ M R+ +I
Sbjct: 135 THDAQAALRRIIEYTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKSLNDTAMIERLRYIA 194
Query: 228 NEEGL-NLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSG 278
+ E + + E + ++S GDLR+AITYLQ + R +GS +T ++ ++SG
Sbjct: 195 SSESMPPVKDEVYQAIHAVSDGDLRKAITYLQSSYRFYGSRELTPDNIYNISG 247
>gi|195111460|ref|XP_002000296.1| GI10150 [Drosophila mojavensis]
gi|193916890|gb|EDW15757.1| GI10150 [Drosophila mojavensis]
Length = 354
Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 138/231 (59%), Positives = 171/231 (74%), Gaps = 4/231 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V+DV Q EVV VL +E A+ P+ML YGPPGTGKT+T LA A Q+FG
Sbjct: 32 PWVEKYRPRSVEDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFG- 90
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++Y+ R+LELNASD+RGINVVRTKIK FA + S R G PCPP+KII+LDEADSMT
Sbjct: 91 DMYRDRILELNASDERGINVVRTKIKNFAQLT-ASNVRPDGRPCPPFKIIVLDEADSMTH 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNY+SRII P+ SRC+KFRFK L E + +R+ HIC +
Sbjct: 150 AAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLKHICMQ 209
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLISVSG 278
E +N+D +A ++ IS GD+RRAIT LQ RL GS +I + DL+ +SG
Sbjct: 210 ENVNIDPDAYKSIVKISGGDMRRAITTLQSCYRLKGSDHTINTDDLLEMSG 260
>gi|66808355|ref|XP_637900.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74853593|sp|Q54MD4.1|RFC4_DICDI RecName: Full=Probable replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|60466332|gb|EAL64392.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 280 bits (715), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 164/233 (70%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL R+
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
I +EG+ + + +S GD+R+AITYLQ A R F + I+ + +++G
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAG 239
>gi|327292807|ref|XP_003231101.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
gi|326466731|gb|EGD92184.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
Length = 386
Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 131/227 (57%), Positives = 165/227 (72%), Gaps = 6/227 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DV Q+ + +L L +N PHMLFYG PGTGKT+T LA++
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISILQRNLNASNLPHMLFYGSPGTGKTSTILAMSKS 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----GSGQRRGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R YPCPP+KIIIL
Sbjct: 90 LFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPADPVYRSQYPCPPFKIIIL 149
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+P+ASRC+KFRFK L S
Sbjct: 150 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQS 209
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGS 266
R++ I E L+L+ + TL S GDLR+AIT++Q +ARL +GS
Sbjct: 210 RLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGS 256
>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
Length = 355
Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 137/233 (58%), Positives = 170/233 (72%), Gaps = 4/233 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK V DV Q EVV VL +L TA+ P++L YGPPGTGKT+T LA A QLF
Sbjct: 29 SVPWVEKYRPKNVDDVVEQGEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLF 88
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G +++K R+LELNASDDRGI V+R K+KTFA +A SG R G PCPP+KI+ILDEAD+M
Sbjct: 89 G-DMFKERILELNASDDRGIAVIRNKVKTFAQLA-ASGTRPDGKPCPPFKIVILDEADAM 146
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRTME +K TRF +CNY+SRIIEP+ SRC KFRFKPL +E + R+ IC
Sbjct: 147 THAAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLRQEKIIERLRFIC 206
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG--SSITSKDLISVSG 278
++E + ++ +A + IS GDLRRAIT LQ RL G + I D++ +SG
Sbjct: 207 DQETVEVEDQAYQDIVDISGGDLRRAITTLQSCHRLKGKEAKIEHSDILEMSG 259
>gi|452001809|gb|EMD94268.1| hypothetical protein COCHEDRAFT_1028190 [Cochliobolus
heterostrophus C5]
Length = 1071
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 135/237 (56%), Positives = 171/237 (72%), Gaps = 19/237 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ ++VL+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 687 QPWVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 746
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA------------AVAVGSGQRRGG------ 150
PEL KSRVLELNASD+RGI++VR K+K FA V SG GG
Sbjct: 747 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTGEGGMVRYRD 806
Query: 151 -YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KF
Sbjct: 807 KYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKF 866
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
RFK L + RV I E + LD L ++ GDLR+AIT+LQ AARL G+
Sbjct: 867 RFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQSAARLVGA 923
>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica CLIB122]
Length = 378
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/220 (60%), Positives = 163/220 (74%), Gaps = 2/220 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV+ Q+ V VL TL +AN PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 27 PWVEKYRPKSLDDVSSQDHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTVLALAKELYGP 86
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG--YPCPPYKIIILDEADSM 167
EL K RVLELNASD+RGI +VR IK FAA V + + YPCPP+KIIILDEADSM
Sbjct: 87 ELMKDRVLELNASDERGIAIVRDSIKNFAAQKVVAPKDHIAEKYPCPPFKIIILDEADSM 146
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYS TRF ICNY++RII+PLASRC+KFRF+ L +R+ H+
Sbjct: 147 TTDAQSALRRTMETYSAQTRFCLICNYVTRIIDPLASRCSKFRFRLLDGNDALARLRHVS 206
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+ E L+++ L + ++ GDLRRAIT LQ +RL G S
Sbjct: 207 DAEQLSVEDGVLEKILEVANGDLRRAITILQSCSRLSGES 246
>gi|444315800|ref|XP_004178557.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
gi|387511597|emb|CCH59038.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
Length = 350
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/241 (55%), Positives = 168/241 (69%), Gaps = 8/241 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++QPWVEKYRPK + DV Q+ V VL L+T+N PHMLFYGPPGTGKT+T LA+ +
Sbjct: 16 NNTQPWVEKYRPKSLDDVYSQDHTVSVLKKNLQTSNLPHMLFYGPPGTGKTSTILAMTKE 75
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDE 163
L+GP L SR+LELNASD+RGIN+VR KIK FA + + S YPCPPYKIIILDE
Sbjct: 76 LYGPNLINSRILELNASDERGINIVRKKIKNFAKLIISKPSKDDLEKYPCPPYKIIILDE 135
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTME YS +TRF ICNY++RII+PLASRC KFRFK L+ + R+
Sbjct: 136 ADSMTSDAQSALRRTMEKYSNITRFCLICNYVTRIIDPLASRCTKFRFKSLNNDNAIERL 195
Query: 224 LHICNEEGLNLDAEALS-----TLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVS 277
I E LN++ + ++ L I+ GDLRR+IT LQ A+ ITS + ++
Sbjct: 196 KFISKNENLNVENDEINNDFYKNLLQIANGDLRRSITLLQSASNFSLDGPITSARIDELA 255
Query: 278 G 278
G
Sbjct: 256 G 256
>gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon
pisum]
Length = 359
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/234 (58%), Positives = 171/234 (73%), Gaps = 4/234 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
S+ PWVEKYRP+ V +V+ Q E+V VL LE A+ PH+LFYGPPGTGKT+T +A A Q
Sbjct: 33 STTPWVEKYRPRTVDEVSEQSEIVAVLKQCLEQGADMPHLLFYGPPGTGKTSTIIAAARQ 92
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG ++YK+R+LELNASDDRGI V+R K+KTFA + S +R G PCPP+KI++LDEAD
Sbjct: 93 LFG-DMYKNRMLELNASDDRGIQVIRDKVKTFAQLT-ASDRRPDGKPCPPFKIVVLDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRT+E +K TRF ICNY+S II+PL SRC+KFRFKPLS E+M +R+ H
Sbjct: 151 SMTAPAQAALRRTIERETKTTRFCLICNYVSCIIDPLTSRCSKFRFKPLSHEIMLTRLEH 210
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSG 278
IC EEG+ L+ L S GD+RRAIT LQ ARL G I D++ V G
Sbjct: 211 ICKEEGVKCAPRVLARLVDASGGDMRRAITSLQSTARLKGEVGIEEVDVLEVVG 264
>gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO]
Length = 353
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/239 (56%), Positives = 169/239 (70%), Gaps = 7/239 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKIFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++G
Sbjct: 203 FISEQENVKCDDGVLEXILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAG 261
>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
Length = 352
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 135/239 (56%), Positives = 171/239 (71%), Gaps = 6/239 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWVEKYRPK++ DV+ Q+ + VL TL +AN PHMLFYGPPGTGKT+T A+ +
Sbjct: 20 EHTKPWVEKYRPKKLDDVSAQDHTISVLKKTLTSANLPHMLFYGPPGTGKTSTIFALTRE 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDE 163
L+GPEL K+RVLELNASD+RGI +VR K+K FA + V + YPCPPYKIIILDE
Sbjct: 80 LYGPELSKTRVLELNASDERGIAIVREKVKNFARLTVSKPSKEALEKYPCPPYKIIILDE 139
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT DAQ+ALRRTME +S VTRF ICNY++RII+PLASRC+KFRFK L E R+
Sbjct: 140 ADSMTADAQSALRRTMENHSNVTRFCLICNYVTRIIDPLASRCSKFRFKSLDESNAIGRL 199
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----SSITSKDLISVSG 278
I E + + AL + IS GD+RRAIT LQ AA+ G ITS+++ ++G
Sbjct: 200 KEISQLENVPHEEGALQRILEISNGDMRRAITLLQSAAKRLGFGELDKITSQEVEELAG 258
>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
Length = 353
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/239 (56%), Positives = 169/239 (70%), Gaps = 7/239 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++G
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAG 261
>gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789]
gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291]
gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118]
gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13]
gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23]
gi|349579253|dbj|GAA24416.1| K7_Rfc2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764724|gb|EHN06245.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/239 (56%), Positives = 169/239 (70%), Gaps = 7/239 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++G
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAG 261
>gi|315042534|ref|XP_003170643.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
gi|311344432|gb|EFR03635.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
Length = 386
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 131/227 (57%), Positives = 165/227 (72%), Gaps = 6/227 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q +QPWVEKYRPK + DV Q+ + VL L +N PHMLFYG PGTGKT+T LA++
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTSTILAMSKS 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG----SGQRRGGYPCPPYKIIIL 161
LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R YPCPP+KIIIL
Sbjct: 90 LFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPPDPAYRSQYPCPPFKIIIL 149
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+P+ASRC+KFRFK L +
Sbjct: 150 DEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQN 209
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGS 266
R++ I E L+L+ + TL S GDLR+AIT++Q +ARL +GS
Sbjct: 210 RLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGS 256
>gi|195163892|ref|XP_002022783.1| GL14564 [Drosophila persimilis]
gi|194104806|gb|EDW26849.1| GL14564 [Drosophila persimilis]
Length = 354
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 174/244 (71%), Gaps = 9/244 (3%)
Query: 37 VKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKT 96
V+R+ P PWVEKYRP+ V DV Q EVV VL +E A+ P+ML YGPPGTGKT
Sbjct: 24 VERRKPPA-----PWVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKT 78
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156
+T LA A Q+FG ++YK R+LELNASD+RGINVVRTKIK F+ ++ S R G P PP+
Sbjct: 79 STILAAARQIFG-DMYKDRILELNASDERGINVVRTKIKNFSQLS-ASHVRPDGRPVPPF 136
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216
KIIILDEADSMT AQ+ALRRTME S TRF ICNY+SRII P+ SRC+KFRFKPL E
Sbjct: 137 KIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLGE 196
Query: 217 EVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLI 274
E + +R+ HIC E + +D +A T+ IS GDLRRAIT LQ RL GS +I + DL
Sbjct: 197 EKIIARLQHICELESVKIDPDAYKTIVKISGGDLRRAITTLQSCFRLQGSEHTINTADLF 256
Query: 275 SVSG 278
+SG
Sbjct: 257 EMSG 260
>gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB]
Length = 348
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/239 (56%), Positives = 169/239 (70%), Gaps = 7/239 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++G
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAG 261
>gi|19115452|ref|NP_594540.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe 972h-]
gi|1350581|sp|Q09843.1|RFC2_SCHPO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|1039340|emb|CAA91237.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe]
Length = 340
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/249 (53%), Positives = 182/249 (73%), Gaps = 11/249 (4%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
+K+E E K+ S PWVE YRPK + V+ QE V+VL TL + N PHMLFYG
Sbjct: 9 KKTEQEAKK--------SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGS 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA++ +LFGP+L KSRVLELNASD+RGI+++R K+K+FA V + + G
Sbjct: 61 PGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN--KVDG 118
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
YPCPP+KIIILDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++RII+PL+SRC+K+R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYR 178
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSIT 269
FKPL E M R+ I ++ ++++ ++ L S GD+R+AIT+LQ AA L G+ IT
Sbjct: 179 FKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPIT 238
Query: 270 SKDLISVSG 278
+ ++G
Sbjct: 239 ISSVEELAG 247
>gi|398365131|ref|NP_012602.3| Rfc2p [Saccharomyces cerevisiae S288c]
gi|730502|sp|P40348.1|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae]
gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae]
gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae]
gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae]
gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c]
gi|392298494|gb|EIW09591.1| Rfc2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 353
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 131/218 (60%), Positives = 160/218 (73%), Gaps = 2/218 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
I +E + D L + IS GDLRR IT LQ A++
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASK 240
>gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 417
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 133/236 (56%), Positives = 174/236 (73%), Gaps = 18/236 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVAVG---------SGQR-----RGG 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA SG+ R
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGETKTVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFR
Sbjct: 153 YPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
FK L + RV I E ++L+ L ++ GDLR+AIT+LQ AARL G+
Sbjct: 213 FKSLDQGNAIKRVSDIAKLENVSLEDGVAEELVRVADGDLRKAITFLQSAARLVGA 268
>gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae]
Length = 353
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 131/218 (60%), Positives = 160/218 (73%), Gaps = 2/218 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
I +E + D L + IS GDLRR IT LQ A++
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASK 240
>gi|134057264|emb|CAK96427.1| unnamed protein product [Aspergillus niger]
Length = 388
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 132/223 (59%), Positives = 163/223 (73%), Gaps = 6/223 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPW RPK + DVA Q+ +VL TL+ +N PHMLFYGPPGTGKT+T LA+A LFG
Sbjct: 35 QPWPHS-RPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRR-GGYPCPPYKIIILDE 163
P LY+SR+LELNASD+RGI +VR KIK FA + G G+ YPCPP+KIIILDE
Sbjct: 94 PSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDE 153
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RIIEPLASRC+KFRFK L R+
Sbjct: 154 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERL 213
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
HI E L L+ + L + S+GD+RRAITY+Q AA+L G+
Sbjct: 214 EHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGA 256
>gi|125982841|ref|XP_001355186.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
gi|54643499|gb|EAL32243.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
Length = 354
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 173/244 (70%), Gaps = 9/244 (3%)
Query: 37 VKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKT 96
V+R+ P PWVEKYRP V DV Q EVV VL +E A+ P+ML YGPPGTGKT
Sbjct: 24 VERRKPPA-----PWVEKYRPSSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKT 78
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156
+T LA A Q+FG ++YK R+LELNASD+RGINVVRTKIK F+ ++ S R G P PP+
Sbjct: 79 STILAAARQIFG-DMYKDRILELNASDERGINVVRTKIKNFSQLS-ASHVRPDGRPVPPF 136
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216
KIIILDEADSMT AQ+ALRRTME S TRF ICNY+SRII P+ SRC+KFRFKPL E
Sbjct: 137 KIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLGE 196
Query: 217 EVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLI 274
E + +R+ HIC E + +D +A T+ IS GDLRRAIT LQ RL GS +I + DL
Sbjct: 197 EKIIARLQHICELESVKIDPDAYKTIVKISGGDLRRAITTLQSCFRLQGSEHTINTADLF 256
Query: 275 SVSG 278
+SG
Sbjct: 257 EMSG 260
>gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
Length = 418
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 173/233 (74%), Gaps = 18/233 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ T++++N PHMLFYGPPGTGKT+T LA+A +L+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVAVG---------SGQR-----RGG 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA SG+ R
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGEAKTVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
YPCPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFR
Sbjct: 153 YPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
FK L + RV I E ++L+ + L ++ GDLR+AIT+LQ AARL
Sbjct: 213 FKSLDQGNAVKRVSDIAKLENVSLEDDVAEELVRVADGDLRKAITFLQSAARL 265
>gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae]
gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae]
Length = 352
Score = 276 bits (707), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 142/250 (56%), Positives = 177/250 (70%), Gaps = 9/250 (3%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
EK + +R+ P L WVEKYRP+ V DV Q EVV VL +E + P+ML YGP
Sbjct: 16 EKQQGASERRKPPTL-----WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGP 70
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA Q+FG ++YK+R+LELNASD+RGINVVRTKIKTF+ +A S R G
Sbjct: 71 PGTGKTSTILAAGRQIFG-DMYKNRILELNASDERGINVVRTKIKTFSQLA-ASSVRPDG 128
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
PCPP+KI+ILDEADSMT AQ+ALRRTME S+ TRF ICNY+SRII P+ SRC+KFR
Sbjct: 129 RPCPPFKIVILDEADSMTHAAQSALRRTMEKESQSTRFCLICNYVSRIIVPITSRCSKFR 188
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG--SSI 268
FK L EE + +R+ IC +EG+ +D +A ++ IS GDLRRAIT LQ RL G +I
Sbjct: 189 FKSLGEEKVIARLQFICEQEGVQIDPDAYKSIVKISGGDLRRAITTLQSCFRLKGPEHTI 248
Query: 269 TSKDLISVSG 278
+ DL +SG
Sbjct: 249 NTADLFEMSG 258
>gi|348688417|gb|EGZ28231.1| hypothetical protein PHYSODRAFT_551952 [Phytophthora sojae]
Length = 339
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 170/239 (71%), Gaps = 11/239 (4%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
APVL PWVEKYRPK V +++HQE VV L ++ PH+LFYGPPGTGKT+T +A
Sbjct: 14 APVL----PWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTSTIVA 69
Query: 102 IAHQLFGPELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+ QLFGP+ K+ R LELNASDDRGI VVR K+K+FA A+ S PP+KII+
Sbjct: 70 VGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASG-----LPPFKIIV 124
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT DAQ+ALRR ME YSKVTRF ICNY+SRIIEP+ASRCAKFRF PL M+
Sbjct: 125 LDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPLERGSMA 184
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSG 278
SRV I +EE +N+ L +L S GDLR+AI YLQ A +L G ++ D+I+V+G
Sbjct: 185 SRVRFIASEEHVNVPDPVLESLLECSNGDLRKAINYLQSAKQLCGDDELSQDDVIAVAG 243
>gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 276 bits (706), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 130/218 (59%), Positives = 160/218 (73%), Gaps = 2/218 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLAS+C+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
I +E + D L + IS GDLRR IT LQ A++
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASK 240
>gi|241829143|ref|XP_002414742.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
gi|215508954|gb|EEC18407.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
Length = 363
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 143/274 (52%), Positives = 183/274 (66%), Gaps = 15/274 (5%)
Query: 8 IHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQE 67
+H K+ +PN +P E + K P + PWVEKYRPK V DVAHQ+
Sbjct: 1 MHAFLKSANPNL---------APPLKERGKEAKQKPKREVHVPWVEKYRPKTVDDVAHQD 51
Query: 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127
EVV VL +L A+ P++LFYGPPGTGKT+T LA++ +LFG ++YKSR+LELNASD+RGI
Sbjct: 52 EVVSVLKKSLLGADLPNLLFYGPPGTGKTSTILALSRELFG-DMYKSRILELNASDERGI 110
Query: 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187
VVR KIK F+ + + R G PCPP+KI+ILDEADSMT AQ ALRRTME +K TR
Sbjct: 111 QVVREKIKNFSQLT-ANATRPDGRPCPPFKIVILDEADSMTPSAQAALRRTMEKQTKTTR 169
Query: 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALS---TLSS 244
F ICNYISRIIEPL SRC+KFRFKPL ++++ R+ IC E + D EA+ L S
Sbjct: 170 FCLICNYISRIIEPLTSRCSKFRFKPLPKDILLERLQKICTAENVQCDDEAILFFFFLKS 229
Query: 245 ISQGDLRRAITYLQGAARL-FGSSITSKDLISVS 277
GD+RRAIT Q +RL G + ++D+ V+
Sbjct: 230 ACLGDMRRAITLFQSVSRLKLGEPVLTEDVAEVA 263
>gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
Length = 339
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/239 (57%), Positives = 171/239 (71%), Gaps = 11/239 (4%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
APVL PWVEKYRPK V +++HQE VV L ++ PH+LFYGPPGTGKT+T +A
Sbjct: 14 APVL----PWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTSTIVA 69
Query: 102 IAHQLFGPELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+ QLFGP+ K+ R LELNASDDRGI VVR K+K+FA A+ S PP+KII+
Sbjct: 70 VGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSAS-----GLPPFKIIV 124
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT DAQ+ALRR ME YSKVTRF ICNY+SRIIEP+ASRCAKFRF PL + M+
Sbjct: 125 LDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPLEKISMA 184
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSG 278
SRV I +EE +++ L +L S GDLR+AI YLQ A +L G ++ D+I+V+G
Sbjct: 185 SRVRFIASEERVDVSDSVLESLLECSTGDLRKAINYLQSAKQLCGDDELSQDDVIAVAG 243
>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 360
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 136/234 (58%), Positives = 170/234 (72%), Gaps = 4/234 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK V D+ Q EVV VL TL+ A+ P++LFYGPPGTGKT+T LA A QL
Sbjct: 33 SNIPWVEKYRPKTVDDIVEQVEVVSVLRQTLKGADLPNLLFYGPPGTGKTSTILAAARQL 92
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FG +++K R+LELNASDDRGI V+R K+KTFA ++ S R G PCPP+KI++LDEADS
Sbjct: 93 FG-DMFKERILELNASDDRGIQVIRDKVKTFAQLS-ASSTRPDGQPCPPFKIVLLDEADS 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT AQ ALRRTME Y+K TRF +CNY+SRII P+ SRC+KFRFKPL E + R+ I
Sbjct: 151 MTSAAQAALRRTMELYTKTTRFCLVCNYVSRIIPPITSRCSKFRFKPLGENKIFERLSKI 210
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGSSITSKDLISVSG 278
E +N++ + L TL + GDLRRAIT LQ AR+ G IT +D+ V+G
Sbjct: 211 SKAEKVNINDDTLMTLVKCTGGDLRRAITSLQSCARIKEEGELITIEDVNEVAG 264
>gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis]
gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis]
Length = 356
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/271 (53%), Positives = 182/271 (67%), Gaps = 16/271 (5%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK+ S N + T + E R+ P PWVEKYRP+ V DV Q EV
Sbjct: 6 KTGKSSSGNSSTDKQATNAPTE-------RRKPPA-----PWVEKYRPRSVDDVVEQSEV 53
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V VL +E A+ P+ML YGPPGTGKT+T LA A Q+FG ++Y+ R+LELNASD+RGINV
Sbjct: 54 VAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFG-DMYRDRILELNASDERGINV 112
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VRTKIK FA + S R G CPP+KII+LDEADSMT AQ ALRRTME S+ TRF
Sbjct: 113 VRTKIKNFAQLT-ASNVRPDGRSCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFC 171
Query: 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
ICNY+SRII P+ SRC+KFRFK L E + +R+ HIC EG+ +D +A ++ IS GD
Sbjct: 172 LICNYVSRIIVPITSRCSKFRFKALGETQIIARLQHICELEGVRIDPDAYKSIVRISGGD 231
Query: 250 LRRAITYLQGAARLFGS--SITSKDLISVSG 278
+RRAIT LQ RL G+ +I + DL+ +SG
Sbjct: 232 MRRAITTLQSCYRLKGAEHTINTDDLLEMSG 262
>gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi]
gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi]
Length = 356
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 136/231 (58%), Positives = 170/231 (73%), Gaps = 4/231 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V DV Q EVV VL +E A+ P+ML YGPPGTGKT+T LA A Q+FG
Sbjct: 34 PWVEKYRPRSVDDVVEQSEVVAVLRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++Y+ R+LELNASD+RGINVVRTKIK FA + S R G PCPP+KII+LDEADSMT
Sbjct: 93 DMYRERILELNASDERGINVVRTKIKNFAQLT-ASSVRPDGRPCPPFKIIVLDEADSMTH 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNY+SRII P+ SRC+KFRFK L E + +R+ HIC+
Sbjct: 152 AAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIITRLQHICDL 211
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLISVSG 278
E ++++ +A ++ IS GD+RRAIT LQ RL G+ +I S DL+ +SG
Sbjct: 212 ESVSIEPDAYQSIVKISGGDMRRAITTLQSCYRLKGAEHTINSDDLLEMSG 262
>gi|342181603|emb|CCC91083.1| putative replication factor C, subunit 2 [Trypanosoma congolense
IL3000]
Length = 347
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/238 (53%), Positives = 175/238 (73%), Gaps = 6/238 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++PWVEKYRPK + +V QEEVV+ L +TL + A+ PH LF+GPPGTGKTT LA+AH+
Sbjct: 17 DARPWVEKYRPKSLDEVKSQEEVVQALRSTLLQGASMPHFLFHGPPGTGKTTAILAVAHE 76
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR-----GGYPCPPYKIII 160
+FGP+ KSRV ELNASDDRGI V+R K+K+FA AVG+ Q++ YP PP+K+II
Sbjct: 77 MFGPDYIKSRVRELNASDDRGIQVIREKVKSFAQAAVGTVQQKVQSDGKVYPVPPFKLII 136
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD++ DAQ ALRR ME +S VTRF +CNY++RII+P+ASRCAK+RFKPL ++ +
Sbjct: 137 LDEADALLPDAQGALRRMMEDFSDVTRFCILCNYVTRIIDPIASRCAKYRFKPLIKQALH 196
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+ + + E + + +++ L +S GDLR AI YLQ A + G+++ S+D + VSG
Sbjct: 197 ERISEVASRENIKISTASMNALDHVSGGDLRLAIMYLQYAQKAHGNNLESEDFVEVSG 254
>gi|224000545|ref|XP_002289945.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220975153|gb|EED93482.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 346
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 133/238 (55%), Positives = 174/238 (73%), Gaps = 8/238 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVE+YRPK ++DV+HQ E++ L N +ET PH+LFYGPPGTGKT+ ALA+ QLF P
Sbjct: 16 PWVERYRPKSLQDVSHQGEIISTLKNAVETNRLPHLLFYGPPGTGKTSVALALCRQLFEP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ RVLELNASD+RGI+VVR KIK FA++A+ + + YP PP+KIIILDEAD++T
Sbjct: 76 SQLRRRVLELNASDERGISVVRDKIKHFASLAIDTETTK-KYPNPPFKIIILDEADTVTR 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR +E YSKVTRF ICNY++RIIEPLASRCAKFRF+PL E M +R+ +I +E
Sbjct: 135 DAQAALRRVIEAYSKVTRFILICNYVTRIIEPLASRCAKFRFQPLPVESMKARIKYIAHE 194
Query: 230 EGLNL----DAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLIS-VSGYP 280
E + E + + ++SQGD+RRA+T LQ A L G + + KD I+ ++G P
Sbjct: 195 EHCQFEEGKEEEVVDEILTLSQGDMRRAVTTLQSAHSLSGGAGEVIKKDSIAEMAGLP 252
>gi|340054249|emb|CCC48545.1| putative replication factor C, subunit 2 [Trypanosoma vivax Y486]
Length = 347
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 138/262 (52%), Positives = 176/262 (67%), Gaps = 12/262 (4%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHML 86
S P + V+ M P +PWVEKYRPK + +V QEEVV+ L +TL + A+ PH L
Sbjct: 3 SIPPTKKARVEPSMDP-----RPWVEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFL 57
Query: 87 FYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-G 145
F+GPPGTGKTT LA+A +LFGP+ +SRV ELNASDDRGI V+R K+K FA AVG G
Sbjct: 58 FHGPPGTGKTTAILAVAQELFGPDYIRSRVRELNASDDRGIQVIREKVKAFAQSAVGGVG 117
Query: 146 QRRGG----YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
Q+ YP PP+K+IILDEAD++ DAQ ALRR ME YS VTRF +CNY+SRII+P
Sbjct: 118 QKVQSDGNVYPVPPFKLIILDEADALLPDAQAALRRMMEDYSDVTRFCILCNYVSRIIDP 177
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ASRCAK+RFKPL + R+L + EGL + ++ L S GD+R AI YLQ A
Sbjct: 178 IASRCAKYRFKPLVRHALRERILEVATREGLRMSDASIDALDRTSGGDMRLAIMYLQHAQ 237
Query: 262 RLFGSSITSKDLISVSG-YPTG 282
+ G +T++D + VSG P G
Sbjct: 238 KAHGDDLTNEDFVEVSGKVPAG 259
>gi|430814613|emb|CCJ28174.1| unnamed protein product [Pneumocystis jirovecii]
Length = 967
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 130/217 (59%), Positives = 165/217 (76%), Gaps = 3/217 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + VA Q+ + VL +L++ N PH+LFYG PGTGKT+T LA+A++LFG
Sbjct: 21 PWVEKYRPQTLDQVAFQDHAISVLKKSLQSMNLPHLLFYGSPGTGKTSTILALANELFGM 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL KSRVLELNASD+RGI+++R K+K FA +AV + + CPPYKIIILDEADSMT+
Sbjct: 81 ELMKSRVLELNASDERGISIIREKVKNFARIAVSNS---SEHSCPPYKIIILDEADSMTQ 137
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ+ALRRTMETYSK+TRF ICNYI+RII PLASRC+KF+FKPLS + ++ +I +
Sbjct: 138 DAQSALRRTMETYSKITRFCLICNYITRIIGPLASRCSKFQFKPLSFQHSMEKLKYIASC 197
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
E + D + L S GDLR+AIT+LQ AARL S
Sbjct: 198 ENVKYDKGVIEMLIEQSNGDLRKAITFLQSAARLVDS 234
>gi|145477489|ref|XP_001424767.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391833|emb|CAK57369.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 273 bits (698), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 126/237 (53%), Positives = 168/237 (70%), Gaps = 1/237 (0%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
PV++ PWVEKYRP +++D+A+QEEVV+ L L+T N PH+L +GPPGTGKT+T +A+
Sbjct: 21 PVVKPMLPWVEKYRPNKIEDLAYQEEVVQSLQGVLKTGNLPHLLLHGPPGTGKTSTIIAL 80
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QLFGP+ ++ RVLELNASDDRGINVVR K+K FA V G+ CP YKIIILD
Sbjct: 81 AKQLFGPDFWRQRVLELNASDDRGINVVRNKVKKFAEQIVAKNP-NPGFLCPSYKIIILD 139
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT DAQ+ALRR +E Y+ TRF ICNYI++IIEPL SRC K+RFK + E R
Sbjct: 140 EADSMTNDAQSALRRIIEDYATTTRFCIICNYITKIIEPLVSRCVKYRFKSIPENEQIER 199
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279
+ + + E + + +AL L +S GDLR+++ LQ ++ L+ SI K + +SG+
Sbjct: 200 LKFVADSESVTYNLDALKQLVVVSGGDLRKSVNMLQSSSTLYEKSINKKAINEISGF 256
>gi|167523687|ref|XP_001746180.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775451|gb|EDQ89075.1| predicted protein [Monosiga brevicollis MX1]
Length = 323
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 165/229 (72%), Gaps = 2/229 (0%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
+E RPK DVAHQ EVV +L + + PH LFYGPPGTGKT+T LA+A + FGP+L
Sbjct: 1 MEHSRPKTTHDVAHQSEVVAMLQKCVAGGDMPHTLFYGPPGTGKTSTILAVAREFFGPQL 60
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
K RVLELNASD+RGI VVR KIK FA V + + GGYPCPP+KII+LDEAD+MTE A
Sbjct: 61 MKERVLELNASDERGIGVVREKIKNFA-VMTANTRVSGGYPCPPFKIILLDEADAMTEAA 119
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
Q+ALRRT+E +S VTRF +CNY+SRIIEPLASRCAKFRFKPLS+ + +R+ HI + E
Sbjct: 120 QSALRRTIEQHSNVTRFCMVCNYVSRIIEPLASRCAKFRFKPLSDATVLARLQHIRDAEN 179
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSGY 279
+ E L T+ +S GD+R+AIT+LQ RL G I + + VSG
Sbjct: 180 VKCADEVLQTIVKVSGGDMRQAITFLQSCHRLRGDLGIETSHVEDVSGL 228
>gi|326475381|gb|EGD99390.1| DNA replication factor C subunit Rfc2 [Trichophyton tonsurans CBS
112818]
Length = 396
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 132/237 (55%), Positives = 165/237 (69%), Gaps = 16/237 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC----------PHMLFYGPPGTGK 95
Q +QPWVEKYRPK + DV Q+ + VL L +N PHMLFYG PGTGK
Sbjct: 30 QQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNVKLQYCLFKPLPHMLFYGSPGTGK 89
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG----SGQRRGGY 151
T+T LA++ LFGP L +SRVLELNASD+RGIN+VR KIK FA + + R Y
Sbjct: 90 TSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYRSQY 149
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
PCPP+KIIILDEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+P+ASRC+KFRF
Sbjct: 150 PCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRF 209
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGS 266
K L SR++ I E L+L+ + TL S GDLR+AIT++Q +ARL +GS
Sbjct: 210 KVLDGSAAQSRLIEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGS 266
>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
putative [Tribolium castaneum]
gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
Length = 355
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/231 (58%), Positives = 165/231 (71%), Gaps = 4/231 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V DV Q E V VL + A+ P++LFYGPPGTGKT+T LA A QLFG
Sbjct: 31 PWVEKYRPRTVSDVVEQSEAVSVLQQCISGADLPNLLFYGPPGTGKTSTILAAARQLFG- 89
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ R+LELNASD+RGI V+R K+KTFA + SG R G PCPP+KI+ILDEADSMT
Sbjct: 90 DYYRDRILELNASDERGIQVIRDKVKTFAQLT-ASGTRPDGKPCPPFKIVILDEADSMTH 148
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S+ TRF ICNY+SRIIEPL SRC KFRFKPL+E ++ R+ IC +
Sbjct: 149 AAQAALRRTMEKESRSTRFCLICNYVSRIIEPLTSRCTKFRFKPLNEAMILERLSFICGK 208
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSG 278
E + + L+ L S GD+RRAIT LQ A+L GS I+ D++ V+G
Sbjct: 209 ENVECSDKTLAALVETSGGDMRRAITSLQSCAKLKGSGVPISIDDVLEVTG 259
>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
Length = 356
Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 134/230 (58%), Positives = 168/230 (73%), Gaps = 3/230 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V++QEEVV VL +L+ A+ P++LFYGPPGTGKT+T LA A LFG
Sbjct: 35 PWVEKYRPRTIDEVSYQEEVVAVLQKSLQGADLPNLLFYGPPGTGKTSTILAAARDLFG- 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++YK RVLELNASD+RGI VVR K+K F+ V S R G CPP+KI+ILDEADSMT
Sbjct: 94 DIYKDRVLELNASDERGIQVVREKVKIFSQRTVSS-VRPDGKQCPPFKIVILDEADSMTG 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +K TRF ICNY+SRIIEPL SRC+KFRFKPL E++ R+ HIC
Sbjct: 153 AAQAALRRTMEKETKSTRFCLICNYVSRIIEPLTSRCSKFRFKPLPREILVKRLEHICIA 212
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI-TSKDLISVSG 278
E ++ E L +L S+GDLRRAIT+LQ A L + T +D+ ++G
Sbjct: 213 ENMSCSEEVLESLIEASEGDLRRAITFLQSIANLNSEACPTIEDIYEITG 262
>gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii GT1]
gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii VEG]
Length = 357
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 130/261 (49%), Positives = 179/261 (68%), Gaps = 4/261 (1%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQ--PWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
+ + SS EK+ P + S+Q PWVEKYRP++V+D+AHQ E ++L LET N
Sbjct: 4 AVSASSVEKAPSPFSTAAPPRVSSAQVVPWVEKYRPRRVEDMAHQVEPKKMLRRILETGN 63
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
PH+LFYGPPGTGKT+ ALA+ +LFG E K+R+LELNASDDRGI VVR +IK +
Sbjct: 64 MPHLLFYGPPGTGKTSAALALVRELFGREEAKNRLLELNASDDRGIKVVRERIKQYTKTN 123
Query: 142 VGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
+ G+ G P +KI+ILDEAD MT+DAQ+ALRR ME +S+ TRF ICNY+ RII
Sbjct: 124 IAKGKINPETGREMPTWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRII 183
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+P+ SRC+ RF+P++ + +R+ HIC+ EGL + + A+ L ISQGDLRRA+T LQ
Sbjct: 184 DPIFSRCSPHRFEPVARDAQEARIRHICDSEGLVVTSGAVDALLRISQGDLRRAVTLLQS 243
Query: 260 AARLFGSSITSKDLISVSGYP 280
AA ++ ++ ++ V+G P
Sbjct: 244 AASIYDDNLHEDAILEVAGQP 264
>gi|194892122|ref|XP_001977600.1| GG18160 [Drosophila erecta]
gi|190649249|gb|EDV46527.1| GG18160 [Drosophila erecta]
Length = 353
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 141/260 (54%), Positives = 178/260 (68%), Gaps = 4/260 (1%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S S D+ + A + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGSGDKSQGAPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQL 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SRII
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIV 179
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRC+KFRFK L E+ + R+ +IC EG+ ++ +A ++ IS GDLRRAIT LQ
Sbjct: 180 PITSRCSKFRFKALGEDKVIDRLKYICGLEGVKIEEDAYKSIVKISGGDLRRAITTLQSC 239
Query: 261 ARLFG--SSITSKDLISVSG 278
RL G +I + DL +SG
Sbjct: 240 YRLKGPEHTINTADLFEMSG 259
>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 129/238 (54%), Positives = 168/238 (70%), Gaps = 2/238 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V+++AHQ EVV L + T N PH+LFYGPPG GKT+ LA+A +LFGP
Sbjct: 24 PWVEKYRPARVEELAHQPEVVGALKEAVGTGNLPHLLFYGPPGNGKTSAILALARELFGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI+V+R K+K FA ++V + G PP+KII+LDEADSMT+
Sbjct: 84 ELWRDRVLELNASDERGIDVIRDKVKKFAQISVRAVAPGSGKSAPPFKIIVLDEADSMTK 143
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR +E Y++VTRF ICNY+SRIIEPL SRCAKFRF+PLS+E R+ +I N
Sbjct: 144 DAQAALRRIIENYTQVTRFCIICNYVSRIIEPLQSRCAKFRFEPLSDESQRGRLEYIANC 203
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLISVSGYPTGGSG 285
EG+ + A+ L S GDLR AI LQ + +IT ++++ SG+ G
Sbjct: 204 EGVKMANGAMEALLGTSNGDLRSAINTLQMVSSCLSDDEAITVEEILEASGFADSSYG 261
>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
Length = 353
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 141/260 (54%), Positives = 177/260 (68%), Gaps = 4/260 (1%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S S D+ + A + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGSGDKSQGTPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQL 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SRII
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIV 179
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRC+KFRFK L E+ + R+ +IC EG+ ++ +A ++ IS GDLRRAIT LQ
Sbjct: 180 PITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSC 239
Query: 261 ARLFGSS--ITSKDLISVSG 278
RL G I + DL +SG
Sbjct: 240 YRLKGPEHIINTADLFEMSG 259
>gi|72390425|ref|XP_845507.1| replication factor C, subunit 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62360360|gb|AAX80776.1| replication factor C, subunit 2, putative [Trypanosoma brucei]
gi|70802042|gb|AAZ11948.1| replication factor C, subunit 2, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328911|emb|CBH11889.1| replication factor C, subunit 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 347
Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 129/236 (54%), Positives = 170/236 (72%), Gaps = 6/236 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PW+EKYRPK + +V QEEVV+ L +TL + A+ PH LF+GPPGTGKTT LA+AH+LF
Sbjct: 19 RPWIEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFLFHGPPGTGKTTAILAVAHELF 78
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG----QRRGG-YPCPPYKIIILD 162
GP+ KSRV ELNASDDRGI V+R K+K+FA AVG+ Q G YP PP+K+IILD
Sbjct: 79 GPDYIKSRVRELNASDDRGIQVIREKVKSFAQTAVGNVVQKVQSDGKIYPVPPFKVIILD 138
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++ DAQ ALRR ME +S VTRF +CNY++RII+P+ASRCAK+RFKPL +E + R
Sbjct: 139 EADALLPDAQAALRRMMEDFSDVTRFCILCNYVTRIIDPIASRCAKYRFKPLIKEALYER 198
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+ + + E + + ++ L +S GDLR AI YLQ A R G+ + +D + VSG
Sbjct: 199 ISEVASRENIQISRSSIDALDHVSGGDLRLAIMYLQYAQRANGNDLQKEDFVEVSG 254
>gi|340501071|gb|EGR27891.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 357
Score = 269 bits (688), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 127/245 (51%), Positives = 165/245 (67%), Gaps = 16/245 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ +V++QEEVV+ L L+T N PH++F+GPPGTGKT++ LA A QL+GP
Sbjct: 12 PWVEKYRPNKIDEVSYQEEVVKSLEGVLQTGNLPHIIFHGPPGTGKTSSILAFAKQLYGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG----------------GYPC 153
Y+ R+LELNASDDRGI VVR KIK FA V + Y C
Sbjct: 72 NFYRDRILELNASDDRGIQVVREKIKKFAQQVVVKNPDKQFFFYQNQKSYQLFQIRNYKC 131
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
P YKIIILDEADSMT +AQ+ALRR +E S TRF ICNYI++IIEPLASRC KFRFKP
Sbjct: 132 PNYKIIILDEADSMTTEAQSALRRIIEDNSSTTRFCIICNYITKIIEPLASRCVKFRFKP 191
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
+ EE ++ IC++E + + +AL L IS GDLR+++ +Q A+ LF SI + +
Sbjct: 192 IVEEAQLCKLKEICDKEYIQYEDQALEKLIHISNGDLRKSVNLIQSASTLFNKSINLQTV 251
Query: 274 ISVSG 278
+ +SG
Sbjct: 252 LEISG 256
>gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni]
gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni]
Length = 355
Score = 269 bits (688), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 144/261 (55%), Positives = 178/261 (68%), Gaps = 9/261 (3%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPVLQSS--QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
T +SS ++D K APV + PWVEKYRP+ V+DV Q EVV VL +E A
Sbjct: 5 LKTGKSSASTNQD--KATAAPVERRKPPAPWVEKYRPRSVEDVVEQSEVVAVLKKCVEGA 62
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA Q+FG ++Y+ R+LELNASD+RGINVVRTKIK FA +
Sbjct: 63 DLPNMLLYGPPGTGKTSTILAAGRQIFG-DMYRDRILELNASDERGINVVRTKIKNFAQL 121
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ S R G PCPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNY+SRII
Sbjct: 122 S-ASNVRPDGRPCPPFKIIILDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIV 180
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQG 259
P+ SRC KFRFK L E+ + R+ IC EG+ +D E+ ++ IS GD+RRAIT LQ
Sbjct: 181 PITSRCTKFRFKSLGEDQIIERLKLICQAEGVQMDGEESYKSIVRISGGDMRRAITTLQS 240
Query: 260 AARLFGSS--ITSKDLISVSG 278
RL G I ++DL +SG
Sbjct: 241 CYRLKGPEHIINTQDLFEMSG 261
>gi|442749365|gb|JAA66842.1| Putative replication factor c subunit rfc4 [Ixodes ricinus]
Length = 274
Score = 269 bits (688), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 128/214 (59%), Positives = 157/214 (73%), Gaps = 2/214 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEK RPK V DVAHQ+EVV VL +L A+ P++LFYGPPGTGKT+T LA++ +LFG
Sbjct: 60 PWVEKSRPKTVDDVAHQDEVVSVLKKSLLGADLPNLLFYGPPGTGKTSTILALSRELFG- 118
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++YKSR+LELNASD+RGI VVR KIK F+ + R G PCPP+KI+ILDEADSMT
Sbjct: 119 DMYKSRILELNASDERGIQVVREKIKNFSQL-TAHATRPDGRPCPPFKIVILDEADSMTP 177
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME K TRF ICNYISRIIEPL SRC+KFRFKPL ++++ R+ IC
Sbjct: 178 SAQAALRRTMEKQPKTTRFCLICNYISRIIEPLTSRCSKFRFKPLPKDILLERLQKICTS 237
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
E + D E L +GD+RRAIT +Q ++L
Sbjct: 238 ENVQCDDEVFDFLMEACEGDMRRAITLIQSVSKL 271
>gi|118783134|ref|XP_312782.3| AGAP003093-PA [Anopheles gambiae str. PEST]
gi|116129067|gb|EAA08477.3| AGAP003093-PA [Anopheles gambiae str. PEST]
Length = 361
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/235 (58%), Positives = 170/235 (72%), Gaps = 4/235 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRPK V DV Q EVV VL +L T + P++L YGPPGTGKT+T LA A Q
Sbjct: 33 KHSVPWVEKYRPKSVDDVVEQAEVVAVLRESLSTTDLPNLLLYGPPGTGKTSTILAAARQ 92
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LFG +++K R+LELNASDDRGI V+R K+KTFA + SG R G PCPP+KI+ILDEAD
Sbjct: 93 LFG-DMFKERILELNASDDRGIAVIRNKVKTFAQLT-ASGTRTDGKPCPPFKIVILDEAD 150
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRRTME +K TRF +CNY+SRIIEP+ SRC KFRFKPL EE + R+ +
Sbjct: 151 AMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEEKIIERLRY 210
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSG 278
IC++EG+ +D + IS GDLRRAIT LQ RL G+ I +D++ +SG
Sbjct: 211 ICDQEGVTVDDGVYKDIVDISGGDLRRAITTLQSCHRLKGAQARIERQDILEMSG 265
>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
Length = 353
Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 139/260 (53%), Positives = 176/260 (67%), Gaps = 4/260 (1%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S S D+ + + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGSGDKNQGATTTRRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQL 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SRII
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIV 179
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRC+KFRFK L ++ + R+ +IC EG+ ++ +A ++ IS GDLRRAIT LQ
Sbjct: 180 PITSRCSKFRFKALGDDKVIDRLKYICAMEGVKIEEDAYKSIVKISGGDLRRAITTLQSC 239
Query: 261 ARLFGSS--ITSKDLISVSG 278
RL G I + DL +SG
Sbjct: 240 YRLKGPEHIINTADLFEMSG 259
>gi|320580296|gb|EFW94519.1| replication factor C subunit 2 [Ogataea parapolymorpha DL-1]
Length = 334
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 131/239 (54%), Positives = 163/239 (68%), Gaps = 21/239 (8%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKY V+VL L+TAN PHMLFYGPPGTGKT+T LA+A +L+GP
Sbjct: 9 PWVEKY------------HAVQVLKRNLQTANLPHMLFYGPPGTGKTSTILAMAKELYGP 56
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSM 167
L++SRVLELNASD+RGI++VR KIK FA +++ S + YPCPPYK++ILDEADSM
Sbjct: 57 HLFRSRVLELNASDERGISIVRDKIKNFARLSISNPSKEDLEKYPCPPYKLLILDEADSM 116
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYS +TRF ICNYI+RII+PLASRC+KFRFK L EE R+ +IC
Sbjct: 117 TSDAQSALRRTMETYSGITRFCLICNYITRIIDPLASRCSKFRFKMLDEENSIKRLQYIC 176
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-------GSSITSKDLISVSGY 279
NEE + L + IS GDLR+AI +LQ ++ +T + V GY
Sbjct: 177 NEENVTASTPVLKEILRISDGDLRKAINFLQSVHKMLMPAEDEMADDVTEDQIRDVFGY 235
>gi|209877196|ref|XP_002140040.1| replication factor C, subunit 4 [Cryptosporidium muris RN66]
gi|209555646|gb|EEA05691.1| replication factor C, subunit 4, putative [Cryptosporidium muris
RN66]
Length = 335
Score = 266 bits (680), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 127/241 (52%), Positives = 168/241 (69%), Gaps = 4/241 (1%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+ Q++ WVEKYRP+Q+ D+ HQ EVV++L N LE N PH+LFYGPPGTGKT+ LA+
Sbjct: 3 ITQNNNLWVEKYRPRQIADIYHQTEVVKMLKNVLEFGNMPHLLFYGPPGTGKTSAILALC 62
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR--GGYPCPPYKIIIL 161
+LFG + +++R LELNASD+RGINVVR KIKT+ V S + G PP+K++IL
Sbjct: 63 RELFGNDEFRNRTLELNASDERGINVVREKIKTWTRQVVYSNKINPITGRKIPPWKVVIL 122
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEA+ MT DAQ+ALRR +ET +K TRF ICNYI++IIEPLASRCAKFRF+P+S +
Sbjct: 123 DEAEMMTSDAQSALRRIIETSAKNTRFVIICNYINKIIEPLASRCAKFRFQPISFKAQRE 182
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSGY 279
R+ IC +E + + E L +SQGDLRRAIT LQ L+ + + +I V+G
Sbjct: 183 RLNFICQQENIICEPEVFDILVDLSQGDLRRAITILQSTCELYSEEEIVKATSVIEVAGI 242
Query: 280 P 280
P
Sbjct: 243 P 243
>gi|157167248|ref|XP_001652243.1| replication factor C, 37-kDa subunit, putative [Aedes aegypti]
gi|94469174|gb|ABF18436.1| replication factor C [Aedes aegypti]
gi|108877369|gb|EAT41594.1| AAEL006788-PA [Aedes aegypti]
Length = 358
Score = 266 bits (679), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 137/233 (58%), Positives = 169/233 (72%), Gaps = 4/233 (1%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK V DV Q EVV VL +L TA+ P++L YGPPGTGKT+T LA A QLF
Sbjct: 32 SVPWVEKYRPKSVDDVVEQAEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLF 91
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G +++K R+LELNASDDRGI V+R K+KTFA + SG R G PCPP+KI+ILDEAD+M
Sbjct: 92 G-DMFKERILELNASDDRGIAVIRNKVKTFAQLT-ASGTRTDGKPCPPFKIVILDEADAM 149
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRTME +K TRF +CNY+SRIIEP+ SRC KFRFKPL EE + R+ IC
Sbjct: 150 THAAQAALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEEKVIERLRFIC 209
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG--SSITSKDLISVSG 278
+E ++++ +A + IS GDLRRAIT LQ RL G + I D++ +SG
Sbjct: 210 EQENVDVEDQAYREIVDISGGDLRRAITTLQSCHRLKGKEAKIQHTDILEMSG 262
>gi|357617013|gb|EHJ70534.1| replication factor C4 [Danaus plexippus]
Length = 350
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 176/276 (63%), Gaps = 10/276 (3%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T K S+T P S + +K AP PWVEKYRPK + D+ Q EVV+VL L
Sbjct: 7 TGKISST-DKPSTSGVKSTKKKAPA-----PWVEKYRPKTIDDIVDQGEVVQVLRECLAG 60
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
+ PH+LFYGPPGTGKT+ LA A QLFG ++ + RVLELNASD+RGI V+R K+KTFA
Sbjct: 61 GDLPHLLFYGPPGTGKTSAILAAARQLFG-DITRERVLELNASDERGIQVIRDKVKTFAQ 119
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
+ V S R G PCPPYK++ILDEADSMT AQ ALRRTME ++ TRF ICNY+SRII
Sbjct: 120 LTV-SNTRPDGRPCPPYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNYVSRII 178
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYLQ 258
P+ SRC+KFRFKPL+ E + R+ +C E + + D E L GDLRRA+T LQ
Sbjct: 179 PPITSRCSKFRFKPLARENVIKRLQEVCKSEAVEVGDGEVLHQAVDTCGGDLRRALTALQ 238
Query: 259 GAARLFGSSITSKDLISVSGYPTGGSGGAFRGVQKW 294
RL G IT+ LI V+G F V+ +
Sbjct: 239 CCQRLLG-KITADGLIEVTGLVPENLVDEFLNVKNY 273
>gi|398019618|ref|XP_003862973.1| replication factor C, subunit 2, putative [Leishmania donovani]
gi|322501204|emb|CBZ36283.1| replication factor C, subunit 2, putative [Leishmania donovani]
Length = 354
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/259 (51%), Positives = 176/259 (67%), Gaps = 8/259 (3%)
Query: 28 SSPEKSEDEVKRKMAP-VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHM 85
SS + ++ K + AP ++ PWVEKYRP+ + +V Q+E V L L E AN PH
Sbjct: 3 SSSQPAQKRAKTEGAPDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHF 62
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
LF+GPPGTGKTT+ LA+AH+LFGP+ +SRV ELNASDDRGINVVR K+K FA AV S
Sbjct: 63 LFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSS 122
Query: 146 QRRGG------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
YP PP+K+IILDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII
Sbjct: 123 GSSVTQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRII 182
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+P+ASRCAK+RFKPL + + R+ ++ EG+ L +L L ++S GDLR AI +LQ
Sbjct: 183 DPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQS 242
Query: 260 AARLFGSSITSKDLISVSG 278
A + G ++ +D +SVSG
Sbjct: 243 AQKAKGDDLSKEDFVSVSG 261
>gi|401425841|ref|XP_003877405.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493650|emb|CBZ28940.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 354
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 129/239 (53%), Positives = 167/239 (69%), Gaps = 7/239 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ + +V Q+E V L L E AN PH LF+GPPGTGKTT+ LA+AH+
Sbjct: 23 AAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHE 82
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG------YPCPPYKII 159
LFGP+ +SRV ELNASDDRGINVVR K+K FA AV S YP PP+K+I
Sbjct: 83 LFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLI 142
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL + +
Sbjct: 143 ILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSAL 202
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+ ++ EG+ L +L L ++S GDLR AI +LQ A + G ++ +D +SVSG
Sbjct: 203 YHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSG 261
>gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori]
gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori]
Length = 351
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 131/230 (56%), Positives = 164/230 (71%), Gaps = 4/230 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ Q EVV+VL L + PH+LFYGPPGTGKT+ LA A QLFG
Sbjct: 32 PWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFG- 90
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ + RVLELNASD+RGI VVR K+K FA + V SG+R G PCP YK++ILDEADSMT
Sbjct: 91 DISRDRVLELNASDERGIQVVRDKVKAFAQLTV-SGKRADGRPCPSYKLVILDEADSMTT 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME ++ TRF ICNY+SRII P+ SRC+KFRFKPL+ E + R+ IC
Sbjct: 150 AAQAALRRTMERETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEA 209
Query: 230 EGLNL-DAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E +++ + E L+ +GDLRRA+T LQ RL+G IT+ LI V+G
Sbjct: 210 ENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYG-RITADGLIEVTG 258
>gi|146093994|ref|XP_001467108.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
gi|134071472|emb|CAM70161.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
Length = 354
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 129/239 (53%), Positives = 167/239 (69%), Gaps = 7/239 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ + +V Q+E V L L E AN PH LF+GPPGTGKTT+ LA+AH+
Sbjct: 23 AAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHE 82
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG------YPCPPYKII 159
LFGP+ +SRV ELNASDDRGINVVR K+K FA AV S YP PP+K+I
Sbjct: 83 LFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLI 142
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL + +
Sbjct: 143 ILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSAL 202
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+ ++ EG+ L +L L ++S GDLR AI +LQ A + G ++ +D +SVSG
Sbjct: 203 YHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSG 261
>gi|328767253|gb|EGF77303.1| hypothetical protein BATDEDRAFT_91654 [Batrachochytrium
dendrobatidis JAM81]
Length = 326
Score = 263 bits (673), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 129/252 (51%), Positives = 170/252 (67%), Gaps = 9/252 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L PW E+YRPK + +++ Q EVV VL+NT++T N PH+L YGPPGTGKT+ LA+A
Sbjct: 4 LVDRSPWTERYRPKTLSEISGQNEVVAVLSNTIQTQNLPHLLLYGPPGTGKTSIILALAR 63
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
QL+G K R+LELNASD+RGI+V+R K+K FA + V + PPYKII+LDEA
Sbjct: 64 QLYGANGLKGRLLELNASDERGIDVIREKVKNFAKITVSAAHSNA----PPYKIIVLDEA 119
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DS+T DAQ+ALRR ME YSK+TRF ICNY+SRII+PLASRCAK RFKP+ ++ R+
Sbjct: 120 DSLTTDAQSALRRIMENYSKITRFCLICNYVSRIIDPLASRCAKLRFKPIPMPIVIERLE 179
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSG-YPTG 282
IC+ E L+ AL L++ GDLR+AIT LQ ++ GS++T + +SG P
Sbjct: 180 LICSNEKLSFAPGALDFLATSCAGDLRKAITLLQSIKKVSIGSTVTKSLVADISGIIPDS 239
Query: 283 GSGGAFRGVQKW 294
G +Q W
Sbjct: 240 VMAGI---IQAW 248
>gi|66360032|ref|XP_627194.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
gi|46228833|gb|EAK89703.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
Length = 335
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/238 (52%), Positives = 168/238 (70%), Gaps = 4/238 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
SS WVEKYRP V D++H ++VV +L++ L+ N PH+LF+GPPGTGKT+ LA++ +L
Sbjct: 5 SSNLWVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLALSREL 64
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEA 164
FGP YK+R+LELNASD+RGI+VVR KIK++ V G P +KI+ILDEA
Sbjct: 65 FGPNEYKNRILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIVILDEA 124
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
+ MT DAQ+ALRR +E SK TRF ICNYIS+IIEPLASRCAKFRF+P+S R+
Sbjct: 125 EMMTADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQIERLK 184
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSGYP 280
+IC++E ++ + L T+ ++SQGDLRR I LQ A+ LFG I+ ++ VSG P
Sbjct: 185 YICSQEDVSYEDGVLETIVNLSQGDLRRGINILQSASELFGKDKRISMSSILDVSGVP 242
>gi|403350390|gb|EJY74655.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 374
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 171/255 (67%), Gaps = 4/255 (1%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T Q+ + +D+ + AP PWVEKYRP +V++V+HQ EVV L ++ T PH
Sbjct: 26 TNQTQDHEMKDQTQS--APSRPKFTPWVEKYRPSKVEEVSHQTEVVSALRQSILTGQVPH 83
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
++FYGPPGTGKT+T LA++ +LFG E +K RVLELNASD+RGI +VR KIK FA + S
Sbjct: 84 LMFYGPPGTGKTSTILALSKELFGHEFFKQRVLELNASDERGIAIVREKIKKFAQRKI-S 142
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
+ CPP +IIILDEADSMT DAQ ALRR +E YS TRF ICNYIS+II+PLAS
Sbjct: 143 KHPDSSFQCPPIQIIILDEADSMTIDAQAALRRIIEQYSTNTRFCIICNYISKIIDPLAS 202
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQGDLRRAITYLQGAARL 263
RC KFRF P+++E R+ IC E +N+ ++ + L IS GDLRR+I LQ A+
Sbjct: 203 RCVKFRFSPIAKEAQIERLKMICERENVNVASDNVFNALVDISAGDLRRSINTLQTASSF 262
Query: 264 FGSSITSKDLISVSG 278
+ KD+ S+SG
Sbjct: 263 KLQQLNVKDIESISG 277
>gi|444509952|gb|ELV09445.1| Replication factor C subunit 4 [Tupaia chinensis]
Length = 322
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/203 (62%), Positives = 152/203 (74%), Gaps = 6/203 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G CPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKACPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALST 241
R+L I +E + + E + T
Sbjct: 207 QQQRLLDIAEKENVKISNEVIPT 229
>gi|157872662|ref|XP_001684866.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
gi|68127936|emb|CAJ06571.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
Length = 354
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/239 (53%), Positives = 167/239 (69%), Gaps = 7/239 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP+ + +V Q+E V L L E AN PH LF+GPPGTGKTT+ LA+AH+
Sbjct: 23 AAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHE 82
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG------YPCPPYKII 159
LFGP+ +SRV ELNASDDRGI+VVR K+K FA AV S YP PP+K+I
Sbjct: 83 LFGPDYIRSRVRELNASDDRGISVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLI 142
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL + +
Sbjct: 143 ILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSAL 202
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+ ++ EG+ L +L L ++S GDLR AI +LQ A + G ++ +D +SVSG
Sbjct: 203 YHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSG 261
>gi|255638181|gb|ACU19404.1| unknown [Glycine max]
Length = 149
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/130 (93%), Positives = 126/130 (96%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKTTTALAIAHQLFGPELYK RVLELNASDDRGINVVRTKIK FAAVAVG+
Sbjct: 1 MLFYGPPGTGKTTTALAIAHQLFGPELYKFRVLELNASDDRGINVVRTKIKDFAAVAVGT 60
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
QR+ GYPCPP+KII+LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLAS
Sbjct: 61 NQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLAS 120
Query: 205 RCAKFRFKPL 214
RCAKFRFKPL
Sbjct: 121 RCAKFRFKPL 130
>gi|146181988|ref|XP_001023745.2| ATPase, AAA family protein [Tetrahymena thermophila]
gi|146143985|gb|EAS03500.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 373
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 120/229 (52%), Positives = 159/229 (69%), Gaps = 1/229 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++++V++QEEV++ L L + N PH++ +GPPGTGKT++ LA A QL+GP
Sbjct: 43 PWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFAKQLYGP 102
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK R+LELNASDDRGI +VR KIK FA V + + CP +KIIILDEADSMT
Sbjct: 103 TFYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKS-FKCPNFKIIILDEADSMTT 161
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
+AQ+ALRR +E S TRF ICNYI++IIEPL SRC KFRFKP+ E +++ IC
Sbjct: 162 EAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIPLEAQITKLEEICKT 221
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E + + EAL L IS GDLR+++ LQ A+ L+ I + + +SG
Sbjct: 222 EDIEYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKDIKVEVIEEISG 270
>gi|380016014|ref|XP_003691988.1| PREDICTED: replication factor C subunit 4-like [Apis florea]
Length = 357
Score = 259 bits (662), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 141/231 (61%), Positives = 162/231 (70%), Gaps = 4/231 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK VKDV Q EVV VL L+ + P++LFYGPPGTGKT+T LA A QLFG
Sbjct: 33 PWVEKYRPKNVKDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFG- 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
LYK RVLELNASD+RGI VVR KIK+FA + G G R G CPP+KIIILDEADSMT
Sbjct: 92 SLYKERVLELNASDERGIQVVREKIKSFAQLTAG-GIRDDGKSCPPFKIIILDEADSMTG 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S TRF ICNY+SRIIEPL SRC KFRFKPL E + R+ +IC E
Sbjct: 151 AAQAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKE 210
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLISVSG 278
E L ++ L + +S GDLRRAIT LQ +L G IT D++ + G
Sbjct: 211 EDLKVEKPVLLKIVEVSGGDLRRAITCLQSITKLKGKGIEITVDDVLEIIG 261
>gi|256053212|ref|XP_002570095.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|350645477|emb|CCD59829.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Schistosoma mansoni]
Length = 362
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/241 (56%), Positives = 165/241 (68%), Gaps = 14/241 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK V +VA+Q EVV VL +E ++ P++LFYGPPGTGKT+ LA+A Q
Sbjct: 22 QKHIPWVEKYRPKTVGEVAYQTEVVSVLQRCIEGSDLPNLLFYGPPGTGKTSLILALARQ 81
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP---CPPYKIIILD 162
LFGP LY RVLELNASD+RGI+V+R K+K FA +AV S G PPYK+IILD
Sbjct: 82 LFGP-LYSERVLELNASDERGISVIREKVKAFAHIAVSSSTNSSGSSSTNIPPYKLIILD 140
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT AQ ALRRTMET + TRF CNY++RIIEP+ SRCAKFRF+PL E+ SR
Sbjct: 141 EADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARSR 200
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----------GSSITSKD 272
+ HI + E L++ E L L S+ GDLR+ IT LQ +L SSITSK+
Sbjct: 201 LRHIADAENLSITNETLDHLLSLCHGDLRQGITMLQCVHQLILSVDDSDVGCRSSITSKE 260
Query: 273 L 273
L
Sbjct: 261 L 261
>gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus]
Length = 357
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/274 (51%), Positives = 174/274 (63%), Gaps = 23/274 (8%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK +P +K ST+++ +K + PWVEKYRPK V D+ Q EV
Sbjct: 6 KTGKLGAPTDVKKPSTSRAKDDKKD-------------LTPWVEKYRPKNVDDIVEQTEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V V+ ++ + P+MLFYGPPGTGKT+ A A Q+FG +YK R+LELNASDDRGI V
Sbjct: 53 VNVIRQAMKHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SMYKDRILELNASDDRGIQV 111
Query: 130 VRTKIKTFA---AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186
VR KIK+FA A +G G CPP+KIIILDEADSMT AQ ALRR ME + T
Sbjct: 112 VREKIKSFALRKANPIGPD----GKKCPPFKIIILDEADSMTGAAQTALRRIMEKEAHST 167
Query: 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS 246
RF +CNY+SRII+P+ASRC KFRFKPLS+E SR+ +ICNEE L D L + S
Sbjct: 168 RFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSISRLEYICNEENLKADRSVLEKIVEAS 227
Query: 247 QGDLRRAITYLQGAARLFGSS--ITSKDLISVSG 278
GDLR+A+ LQ RL G + IT D + V G
Sbjct: 228 GGDLRQAVMCLQSITRLKGKNYEITVDDALDVIG 261
>gi|399219086|emb|CCF75973.1| unnamed protein product [Babesia microti strain RI]
Length = 340
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/234 (52%), Positives = 165/234 (70%), Gaps = 4/234 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +V+HQ V L ++T N PH++FYGPPGTGKT+ ALA+A QLFG
Sbjct: 16 PWVEKYRPKTISEVSHQINPVSALNQIVKTLNMPHLIFYGPPGTGKTSAALALARQLFGK 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADSM 167
+ K R+LELNASDDRGI+VVR KIKT+A + + + G P PP+KI+ILDEAD M
Sbjct: 76 DGLKERILELNASDDRGIDVVREKIKTYARLNISKNRINPETGKPMPPWKIVILDEADMM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E YS +TRF FICNYI +II+PL SRC+ RF+P++++ SR++ IC
Sbjct: 136 TSDAQAALRRAIENYSTITRFIFICNYIYKIIDPLCSRCSLQRFQPIAKQAQISRLVFIC 195
Query: 228 NEEGL-NLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+E + + EA+ L +SQGDLRR+IT LQ L+ +IT + ++G P
Sbjct: 196 EQEKISSFTNEAMEALVRVSQGDLRRSITLLQTIGSLY-KNITEDIVYDIAGIP 248
>gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior]
Length = 356
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/231 (56%), Positives = 157/231 (67%), Gaps = 4/231 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V D+ Q EVV V+ +E + P+MLFYGPPGTGKT+ A A Q+FG
Sbjct: 34 PWVEKYRPKNVNDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+YK R+LELNASDDRGI VVR KIK+FA + + G CPP+KIIILDEADSMT
Sbjct: 93 SMYKDRILELNASDDRGIQVVREKIKSFA-LRRANPNGPDGKKCPPFKIIILDEADSMTG 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR ME S TRF +CNY+SRII+P+ASRC KFRFKPLS+E +R+ +ICNE
Sbjct: 152 AAQTALRRIMEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSIARLEYICNE 211
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSG 278
E L D L + S GDLR+A+ LQ RL G IT+ D + V G
Sbjct: 212 ENLKADKSVLEKIVEASGGDLRQAVMCLQSITRLKGKDYEITADDALDVIG 262
>gi|391326181|ref|XP_003737599.1| PREDICTED: replication factor C subunit 4-like [Metaseiulus
occidentalis]
Length = 320
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/230 (52%), Positives = 168/230 (73%), Gaps = 9/230 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ V DVA Q+EVV VL L++ + PH+LF+GPPGTGKT+T LA+A L+G
Sbjct: 9 PWVEKYRPRTVDDVASQDEVVSVLKKCLQSGDLPHLLFFGPPGTGKTSTILALARDLYGN 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E ++ +VLELNASD+RGI+V+R K+K F+ + G+ R Y+I+ILDEADSMT
Sbjct: 69 E-FRQKVLELNASDERGISVIREKVKNFSQMTANQGKIR-------YRIVILDEADSMTR 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRRTME Y+K TRF ICNY+++II PL SRC+KFRF+PL +V+ +++ IC +
Sbjct: 121 DAQTALRRTMEKYTKTTRFCLICNYVTKIIPPLNSRCSKFRFRPLPTDVLVNKLDEICTK 180
Query: 230 EGLNLD-AEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E +N ++ L L +++GD+RRA+T LQ A R+ IT +D+ +++G
Sbjct: 181 ENVNFRGSDDLKFLIELAEGDMRRAVTLLQSAHRISAEKITREDIRNIAG 230
>gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14]
Length = 333
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 125/232 (53%), Positives = 170/232 (73%), Gaps = 6/232 (2%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRPK + D++HQE VV L ++ + PH+LFYGPPGTGKT+T +A+A +L+
Sbjct: 9 SLPWIEKYRPKVINDISHQEHVVATLRQSIASGQLPHLLFYGPPGTGKTSTIVAVARELY 68
Query: 108 GPELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + K+ R LELNASDDRGI VVR K+K FA A+ S + P +KII+LDEADS
Sbjct: 69 GNDFRKNGRYLELNASDDRGIKVVREKVKLFAQGAINSSE-----SMPAFKIIVLDEADS 123
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQ+ALRR ME YSKVTRF ICNY+SRII+P+ASRC KFRF PL++E M++R+ +I
Sbjct: 124 MTNDAQSALRRMMEDYSKVTRFCLICNYVSRIIDPIASRCVKFRFSPLTKESMAARLSYI 183
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
++E L LD + + TL + GDLR+AI +Q A + G +T+ ++++V+G
Sbjct: 184 GSQENLRLDDDIIDTLLDCANGDLRKAINLMQSARQTGGKELTNDEIVAVAG 235
>gi|401410508|ref|XP_003884702.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
gi|325119120|emb|CBZ54672.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
Length = 387
Score = 256 bits (654), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 167/260 (64%), Gaps = 29/260 (11%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP++V+++AHQEE ++L LET N PH+LFYGPPGTGKT+ ALA+ +LFG
Sbjct: 35 PWVEKYRPRRVEEMAHQEEPKKMLRRILETGNMPHLLFYGPPGTGKTSAALALVRELFGR 94
Query: 110 ELYKSRVLELNASDDRG---------------------------INVVRTKIKTFAAVAV 142
E K+R+LELNASDDRG I VVR +IK + +
Sbjct: 95 EEAKNRLLELNASDDRGKRKPNGVCLGSGETVRRGAPIKQDRNSIKVVRERIKQYTKTNI 154
Query: 143 GSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
G+ G P +KI+ILDEAD MT+DAQ+ALRR ME +S+ TRF ICNY+ +II+
Sbjct: 155 AKGKINPETGREMPAWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHKIID 214
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRC+ RF+P++ E +R+ HIC EGL + A+ L ISQGDLRRA+T LQ A
Sbjct: 215 PIFSRCSPHRFEPVAREAQKARIRHICESEGLAVTTGAVDALLRISQGDLRRAVTLLQSA 274
Query: 261 ARLFGSSITSKDLISVSGYP 280
A ++ ++T ++ V+G P
Sbjct: 275 ASIYDDNLTEDAILEVAGQP 294
>gi|169602695|ref|XP_001794769.1| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
gi|160706232|gb|EAT88110.2| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
Length = 1017
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 133/249 (53%), Positives = 174/249 (69%), Gaps = 20/249 (8%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
K A +L QP E + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T
Sbjct: 632 KGAAMLGLRQPKCEPL--STLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTI 689
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA----AVA----VGSGQRRGG- 150
LA+A QL+GPEL KSRVLELNASD+RGI++VR K+K FA +VA V + + GG
Sbjct: 690 LALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGE 749
Query: 151 ---------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+P
Sbjct: 750 AKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDP 809
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
LASRC+KFRFK L + RV I E + LDA L ++ GDLR+AIT+LQ AA
Sbjct: 810 LASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAA 869
Query: 262 RLFGSSITS 270
RL G++ T+
Sbjct: 870 RLVGATQTA 878
>gi|156550041|ref|XP_001605078.1| PREDICTED: replication factor C subunit 4-like [Nasonia
vitripennis]
Length = 358
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 137/231 (59%), Positives = 164/231 (70%), Gaps = 4/231 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V+DV Q EVV VL L + P++L YGPPGTGKT+T LA A QLFG
Sbjct: 34 PWVEKYRPKTVEDVVEQGEVVEVLRQCLSGGDFPNLLLYGPPGTGKTSTILAAARQLFG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++K R+LELNASD+RGI VVR K+K FA + G+ R G PCPP+KIIILDEADSMT+
Sbjct: 93 SMFKERILELNASDERGIQVVREKVKKFAQLTAGN-TRPDGKPCPPFKIIILDEADSMTD 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRRTME S+ TRF ICNY+SRIIEPL SRC KFRFKPL EE + R+ +IC E
Sbjct: 152 AAQSALRRTMEKESQTTRFCLICNYVSRIIEPLTSRCTKFRFKPLGEEKIIERLEYICGE 211
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--FGSSITSKDLISVSG 278
E L + L + S GDLRRAIT LQ RL G +T+ D++ V+G
Sbjct: 212 EDLKAEKSVLKLVVDASGGDLRRAITCLQSVTRLKGIGIEVTNNDVLEVTG 262
>gi|407416746|gb|EKF37786.1| replication factor C, subunit 2, putative [Trypanosoma cruzi
marinkellei]
Length = 445
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/238 (53%), Positives = 163/238 (68%), Gaps = 6/238 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L++ A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 115 NATPWVEKYRPMTLNEVKSQEEAVSALRASLQSSASMPHFLFHGPPGTGKTTAILAVARE 174
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG----QRRGG-YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVG+ Q G YP P +K+II
Sbjct: 175 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLII 234
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL E +
Sbjct: 235 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVREALY 294
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+ I E L + +L L +S GDLR AI YLQ A + GS +T ++ + VSG
Sbjct: 295 DRIREIAKMEKLTVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSG 352
>gi|351707100|gb|EHB10019.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 361
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/229 (57%), Positives = 166/229 (72%), Gaps = 12/229 (5%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKY PK V +VA QE VV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 66 KKVKPV-----PWVEKYHPKCVDEVAFQE-VVAVLKKSLEGADLPNLLFYGPPGTGKTST 119
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++SRVLELN S +RGI VVR K+K FA +AV G R G PCPP+K+
Sbjct: 120 ILAAAQELFGPELFRSRVLELNGSGERGIQVVREKVKNFAQLAV-PGSRSDGKPCPPFKV 178
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALR TME SK RF CNY++RIIEPL SRC+KFRFKPLS+++
Sbjct: 179 VILDEADSMTSAAQAALRYTMEE-SKTIRF---CNYVNRIIEPLTSRCSKFRFKPLSDKI 234
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
R+L I +E + + E ++ L +S+GDLR+AIT LQ A ++ S
Sbjct: 235 QQQRLLDIAKKENVKISNEGIAYLVKVSEGDLRKAIT-LQSATQVTSGS 282
>gi|407929691|gb|EKG22503.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 342
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 120/212 (56%), Positives = 156/212 (73%), Gaps = 7/212 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + QPWVEKYRPK + DV Q+ V VL+ TL+++N PHMLFYGPPGTGKT+T LA+
Sbjct: 27 PETSALQPWVEKYRPKSLSDVNGQDHTVTVLSRTLQSSNLPHMLFYGPPGTGKTSTILAL 86
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG-------QRRGGYPCPP 155
A QL+GPEL ++RVLELNASD+RGI +VR K+K FA + + + + YPCPP
Sbjct: 87 AKQLYGPELLRTRVLELNASDERGIGIVREKVKNFARQQLSNPPAGPAGVEYKKRYPCPP 146
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+KIIILDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFRFK L
Sbjct: 147 FKIIILDEADSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLD 206
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQ 247
+ R+ I EG+ L A++ L + +
Sbjct: 207 TGSAARRLEEIAAAEGVRLGEGAVAALVRVVE 238
>gi|322797318|gb|EFZ19436.1| hypothetical protein SINV_09794 [Solenopsis invicta]
Length = 353
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/271 (50%), Positives = 171/271 (63%), Gaps = 17/271 (6%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK +P +K ST++ +K + PWVEKYRP+ V D+ Q EV
Sbjct: 39 KTGKLGAPAEVKKPSTSRVKDDKKD-------------LTPWVEKYRPRNVDDIVEQTEV 85
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V V+ +E + P+MLFYGPPGTGKT+ A A Q+FG +YK R+LELNASDDRGI V
Sbjct: 86 VNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SMYKDRILELNASDDRGIQV 144
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+FA + + G CPP+KI+ILDEADSMT AQ ALRR ME S TRF
Sbjct: 145 VRDKIKSFA-LRRANPNGPDGKKCPPFKIVILDEADSMTGAAQTALRRIMEKESHSTRFC 203
Query: 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
+CNY+SRII+P+ASRC KFRFKPL++E +R+ +ICNEE L D L + S GD
Sbjct: 204 LVCNYLSRIIKPIASRCTKFRFKPLTDEKSIARLEYICNEENLKADRSVLEKIVQASGGD 263
Query: 250 LRRAITYLQGAARLFGSS--ITSKDLISVSG 278
LR+A+ LQ RL G IT D + V G
Sbjct: 264 LRQAVMCLQSITRLKGKDYEITVNDALDVIG 294
>gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/234 (54%), Positives = 167/234 (71%), Gaps = 11/234 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ QEE V+ L TLET + PH++F+GPPGTGKT+ ALA+ LFG
Sbjct: 9 PWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFGD 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ ++ RV ELNASD+RGI+ VR+ IK FA++AV +G+ P+KI+ILDEADSMT
Sbjct: 69 D-FRLRVKELNASDERGIDAVRSSIKEFASLAVPNGKI-------PFKIVILDEADSMTS 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +ETYS VTRF ICNY+S+II+P+ SRCAKFRFKPL + R+ I +
Sbjct: 121 AAQNALRRIIETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFED 180
Query: 230 EGLNLDAE-ALSTLSSISQGDLRRAITYLQGAARL--FGSSITSKDLISVSGYP 280
+ L++D+E TL +IS GDLR+AIT+ Q AA ITS+ + S+SG P
Sbjct: 181 QNLSVDSEDTYETLVNISGGDLRKAITFAQSAASTCSLTRKITSEIITSISGAP 234
>gi|340721765|ref|XP_003399285.1| PREDICTED: replication factor C subunit 4-like [Bombus terrestris]
Length = 357
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/271 (55%), Positives = 176/271 (64%), Gaps = 17/271 (6%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK P +K ST++S E S S+ PWVEKYRP+ V+DV Q EV
Sbjct: 6 KTGK-LGPGEPKKASTSRSKEEHS------------GSATPWVEKYRPRTVEDVVEQAEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V VL L + P++LFYGPPGTGKT+T LA A QLFG LYK R+LELNASD+RGI V
Sbjct: 53 VEVLRQCLTGGDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERILELNASDERGIQV 111
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+FA + G G R G CPP+KIIILDEADSMT AQ ALRRTME S TRF
Sbjct: 112 VRDKIKSFAQLTAG-GMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHTTRFC 170
Query: 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
ICNY+SRIIEPL SRC KFRFKPL E+ + R+ +IC EE L L + S GD
Sbjct: 171 LICNYVSRIIEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDLKASKPVLLKIVEASGGD 230
Query: 250 LRRAITYLQGAARL--FGSSITSKDLISVSG 278
LRRAIT LQ RL G+ IT D+I + G
Sbjct: 231 LRRAITCLQSITRLKGKGTDITVDDIIEIIG 261
>gi|291244804|ref|XP_002742285.1| PREDICTED: replication factor C 4-like [Saccoglossus kowalevskii]
Length = 288
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 119/189 (62%), Positives = 147/189 (77%), Gaps = 1/189 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA Q+EVV VL ++E ++ P++LFYGPPGTGKT+T LA+A +LFG
Sbjct: 36 PWVEKYRPKSVDEVAFQDEVVAVLKKSIEGSDLPNLLFYGPPGTGKTSTILAVARELFGN 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E++++RVLELNASD+RGINVVR K+K FA ++ S R G PCPPYKIIILDEADSMT
Sbjct: 96 EMFRTRVLELNASDERGINVVREKVKRFAQLS-ASATRSDGKPCPPYKIIILDEADSMTG 154
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +K TRF ICNY+SRII PL SRCAKFRFKPL+ ++ +R+ IC +
Sbjct: 155 AAQAALRRTMEKETKTTRFCLICNYVSRIIGPLTSRCAKFRFKPLATSILLTRLKGICEQ 214
Query: 230 EGLNLDAEA 238
E +N E
Sbjct: 215 ENVNCSEEV 223
>gi|71408237|ref|XP_806535.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70870309|gb|EAN84684.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/238 (53%), Positives = 163/238 (68%), Gaps = 6/238 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-TANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L+ +A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 17 NATPWVEKYRPMTLSEVKSQEEAVCALRASLQPSASMPHFLFHGPPGTGKTTAILAVARE 76
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG----QRRGG-YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVGS Q G YP P +K+II
Sbjct: 77 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGSVGHKVQSDGQVYPVPQFKLII 136
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL E +
Sbjct: 137 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRETLY 196
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+ I E + + +L L +S GDLR AI YLQ A + GS +T ++ + VSG
Sbjct: 197 DRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSG 254
>gi|378727800|gb|EHY54259.1| replication factor C subunit 2/4 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 157/230 (68%), Gaps = 7/230 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
+AP L PWVEKYRPK + DV QE L + AN PH+L +GPPGTGKT+T L
Sbjct: 28 LAPALV---PWVEKYRPKSLDDVKSQEHATETLRRMVHAANLPHLLLFGPPGTGKTSTIL 84
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA----VAVGSGQRRGGYPCPPY 156
A+ +LFGPEL K+RV E+NASD+RG+ V+R K+K FA+ A S + R YPCPP+
Sbjct: 85 ALCRELFGPELMKTRVKEMNASDERGLTVIREKVKQFASQHLVSAPVSAEYREKYPCPPF 144
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216
K++ILDEAD++T DAQ+ALRR +E YSK TRF I N++SRII P+ASRC+KFRFK L
Sbjct: 145 KVVILDEADALTTDAQSALRRIIENYSKTTRFCLIANFVSRIIAPIASRCSKFRFKSLEG 204
Query: 217 EVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
S+R+ I N E + + + +S GDLRRAIT LQ AARL G+
Sbjct: 205 PQASARIQDILNAEHVEYEDGVVERSLQVSDGDLRRAITLLQSAARLAGA 254
>gi|443723218|gb|ELU11749.1| hypothetical protein CAPTEDRAFT_223108 [Capitella teleta]
Length = 343
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/231 (54%), Positives = 164/231 (70%), Gaps = 16/231 (6%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRPK V +VA+QEEVV VL +E + P+ML YGPPGTGKT+T LA A LFG
Sbjct: 31 EPWVEKYRPKNVDEVAYQEEVVAVLRKAIEGLDLPNMLLYGPPGTGKTSTILAAAKGLFG 90
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
++Y+SR+LELN+SD+RGI+VVR K+KTF+ ++ G G+R G PCPP+KI+ILDEADSMT
Sbjct: 91 -DMYRSRILELNSSDERGISVVRDKVKTFSQLSAG-GKRPDGKPCPPFKIVILDEADSMT 148
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ+ALRRTME SK TRF ICNY+SRIIEP+A +++ R+ IC
Sbjct: 149 NAAQSALRRTMEKESKTTRFCLICNYVSRIIEPIA-------------DILQRRLKEICA 195
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-FGSSITSKDLISVSG 278
+E ++ EAL L S+GD+R+AIT LQ A+R G IT D+ +SG
Sbjct: 196 KEDVSCSDEALEALMYTSEGDMRKAITTLQSASRFKAGEEITKNDIYEISG 246
>gi|70951019|ref|XP_744784.1| replication factor C, subunit 2 [Plasmodium chabaudi chabaudi]
gi|56524878|emb|CAH75042.1| replication factor C, subunit 2, putative [Plasmodium chabaudi
chabaudi]
Length = 330
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 163/239 (68%), Gaps = 3/239 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK++ D+ HQ + +L ++T N PH++F+GPPGTGKT+ A+AH+L
Sbjct: 2 SNLPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEA 164
FG E RVLELNASDDRGI VVR KIK + +++ + P PP+K+++LDEA
Sbjct: 62 FGKENISERVLELNASDDRGITVVREKIKAYTRISISKNKINNETNEPLPPWKLVVLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D MTEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L
Sbjct: 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPLNIKKEKLL 181
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGG 283
+ICN E +N+ +AL+ + +QGDLRRA++ LQ + S IT + ++ +SG P
Sbjct: 182 YICNNENINISDDALTKIIETTQGDLRRAVSVLQLCS-CIDSKITVESVLDISGLPDND 239
>gi|225680958|gb|EEH19242.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb03]
Length = 374
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/191 (62%), Positives = 144/191 (75%), Gaps = 5/191 (2%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + DVA QE + VL TL+ +N PHMLFYGPPGTGKT+T LA++ LFG
Sbjct: 35 QPWVEKYRPKTLDDVASQEHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFG 94
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-----VGSGQRRGGYPCPPYKIIILDE 163
P+LY+SR+LELNASD+RGI++VR KIK FA + V YPCPP+KIIILDE
Sbjct: 95 PQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYPCPPFKIIILDE 154
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT+DAQ+ALRRTME YS++TRF +CNY++RII+PLASRC+KFRFK L SR+
Sbjct: 155 ADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRL 214
Query: 224 LHICNEEGLNL 234
I E L L
Sbjct: 215 EEIARVEKLRL 225
>gi|219109832|ref|XP_002176669.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411204|gb|EEC51132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 350
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/241 (50%), Positives = 167/241 (69%), Gaps = 4/241 (1%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
++Q ++PWVE+YRPK +++V+HQ EVV L N + T PH+L YGPPG+GKT+ ALA+
Sbjct: 11 LVQDNRPWVERYRPKSLQEVSHQTEVVATLQNAVTTGRLPHLLLYGPPGSGKTSVALALC 70
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RGGYPCPPYKIIILD 162
QL+ P ++ RVLELNASD+RGI+VVR KIK FA++ V G YP PP+KIIILD
Sbjct: 71 RQLWHPSQWRRRVLELNASDERGISVVRNKIKHFASLTVAKGNNDMENYPNPPFKIIILD 130
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ ALRR +E +SK+TRF ICNY++R+IEPLASRCAKFRF+ L M +R
Sbjct: 131 EADTVTPDAQAALRRIIEAHSKITRFILICNYVTRVIEPLASRCAKFRFQSLPPSSMKAR 190
Query: 223 VLHICNEEGLN-LDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDLISVSGY 279
+ I NE+ + + + L + + GD+R+A+T LQ L G+ + L ++G
Sbjct: 191 LEWIANEQNCSESEKDLLDDILEYADGDMRQAVTTLQSVHSLAAGGAKVDKAALAEIAGL 250
Query: 280 P 280
P
Sbjct: 251 P 251
>gi|383860560|ref|XP_003705757.1| PREDICTED: replication factor C subunit 4-like [Megachile
rotundata]
Length = 357
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/251 (58%), Positives = 167/251 (66%), Gaps = 9/251 (3%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S + KR P PWVEKYRPK V+DV Q EVV VL L ++ P++LFYG
Sbjct: 18 PSTSRTKEKRSAPP-----PPWVEKYRPKTVEDVVEQAEVVEVLRQCLSGSDFPNLLFYG 72
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPGTGKT+T LA A QLFG LYK R+LELNASD+RGI VVR KIKTFA + G G R
Sbjct: 73 PPGTGKTSTILAAARQLFG-SLYKDRILELNASDERGIQVVRDKIKTFAQLTAG-GMRDD 130
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
G CPP+KIIILDEADSMT AQ ALRRTME S TRF ICNY+SRIIEPL SRC KF
Sbjct: 131 GKRCPPFKIIILDEADSMTAAAQAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKF 190
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-- 267
RFKPL EE + R+ +I NEEGL L + S GD+RRAIT LQ RL G
Sbjct: 191 RFKPLGEEKIIERLEYISNEEGLKAGKPVLLKIVEASGGDMRRAITCLQSITRLKGKDIE 250
Query: 268 ITSKDLISVSG 278
IT D++ + G
Sbjct: 251 ITIDDIVEIIG 261
>gi|407851932|gb|EKG05623.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 126/238 (52%), Positives = 163/238 (68%), Gaps = 6/238 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L++ A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 17 NATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPGTGKTTAILAVARE 76
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG----QRRGG-YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVG+ Q G YP P +K+II
Sbjct: 77 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLII 136
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL E +
Sbjct: 137 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRETLY 196
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+ I E + + +L L +S GDLR AI YLQ A + GS +T ++ + VSG
Sbjct: 197 DRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSG 254
>gi|71654128|ref|XP_815689.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70880763|gb|EAN93838.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 126/238 (52%), Positives = 163/238 (68%), Gaps = 6/238 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQ 105
++ PWVEKYRP + +V QEE V L +L++ A+ PH LF+GPPGTGKTT LA+A +
Sbjct: 17 NATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPGTGKTTAILAVARE 76
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG----QRRGG-YPCPPYKIII 160
LFGP+ SRV E+NASDDRGI V+R K+K FA AVG+ Q G YP P +K+II
Sbjct: 77 LFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLII 136
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD++ DAQ ALRR ME +S VTRF +CNY+SRII+P+ASRCAK+RFKPL E +
Sbjct: 137 LDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRETLY 196
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R+ I E + + +L L +S GDLR AI YLQ A + GS +T ++ + VSG
Sbjct: 197 DRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSG 254
>gi|82539183|ref|XP_724000.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23478491|gb|EAA15565.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii]
Length = 330
Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK++ D+ HQ + +L ++T N PH++F+GPPGTGKT+ A+AH+L
Sbjct: 2 SNLPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEA 164
FG E RVLELNASDDRGINVVR KIK + +++ + P PP+K+++LDEA
Sbjct: 62 FGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKINSENNEPLPPWKLVVLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D MTEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L
Sbjct: 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLL 181
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGG 283
+IC E +++ ALS + +QGDLRRA++ LQ + S IT ++ VSG P
Sbjct: 182 YICKNENIDISDNALSKIIETTQGDLRRAVSVLQLCS-CIDSKITVDSVLDVSGLPDND 239
>gi|350426161|ref|XP_003494352.1| PREDICTED: replication factor C subunit 4-like [Bombus impatiens]
Length = 357
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 151/271 (55%), Positives = 175/271 (64%), Gaps = 17/271 (6%)
Query: 10 KSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEV 69
K+GK P +K ST++S E S S+ PWVEKYRP+ V+DV Q EV
Sbjct: 6 KTGK-LGPGEPKKVSTSRSKEEHS------------GSATPWVEKYRPRTVEDVVEQAEV 52
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129
V VL L + P++LFYGPPGTGKT+T LA A QLFG LYK R+LELNASD+RGI V
Sbjct: 53 VEVLRQCLTGGDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERLLELNASDERGIQV 111
Query: 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
VR KIK+FA + G G R G CPP+KIIILDEADSMT AQ ALRRTME S TRF
Sbjct: 112 VRDKIKSFAQLTAG-GMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHSTRFC 170
Query: 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
ICNY+SRIIEPL SRC KFRFKPL E+ + R+ +IC EE L L + S GD
Sbjct: 171 LICNYVSRIIEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDLKATKPVLLKIVEASGGD 230
Query: 250 LRRAITYLQGAARLFGS--SITSKDLISVSG 278
LRRAIT LQ RL G IT D+I + G
Sbjct: 231 LRRAITCLQSITRLKGKGIDITVDDIIEIIG 261
>gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 127/232 (54%), Positives = 166/232 (71%), Gaps = 11/232 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ QEE V+ L TLET + PH++F+GPPGTGKT+ ALA+ LFG
Sbjct: 9 PWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFG- 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E ++ RV ELNASD+RGI+ VR+ +K FA++AV +G+ P+KI+ILDEADSMT
Sbjct: 68 EDFRLRVKELNASDERGIDAVRSSVKEFASLAVPNGK-------IPFKIVILDEADSMTS 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +ETYS VTRF ICNY+S+II+P+ SRCAKFRFKPL + R+ I ++
Sbjct: 121 AAQNALRRIIETYSAVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIQRLHKIFDD 180
Query: 230 EGLNLD-AEALSTLSSISQGDLRRAITYLQGAAR--LFGSSITSKDLISVSG 278
+ L++D E TL IS GDLR+AIT+ Q AA + ITS+ + S+SG
Sbjct: 181 QNLSVDKEETFETLVDISGGDLRKAITFAQSAASTCIETRKITSEIITSISG 232
>gi|238576141|ref|XP_002387929.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
gi|215448797|gb|EEB88859.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
Length = 360
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 129/243 (53%), Positives = 168/243 (69%), Gaps = 17/243 (6%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVE +RPK + DV+ Q+ V VL L + N PHMLFYGPPGTGKT+T LA+A QLFG
Sbjct: 11 QPWVETHRPKTIDDVSAQQHTVAVLQKALTSTNLPHMLFYGPPGTGKTSTILALARQLFG 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA-----AVAVGSGQRRGGYPCPPYKIIILDE 163
P+ ++SRVLELNASD+RGI++VR KIK FA A V S + YPCPPYKIIILDE
Sbjct: 71 PDNFRSRVLELNASDERGISIVREKIKNFARQTPRAKTVSSDGKE--YPCPPYKIIILDE 128
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC---AKFRFKPLSEEVMS 220
ADSMT+DAQ ALRR METY+++TRF +CNY++R + ++ C +FRF PL +
Sbjct: 129 ADSMTQDAQGALRRIMETYARITRFCLVCNYVTR--QNHSTSCFAMLQFRFTPLDQTSSF 186
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLIS 275
+R+ I E +++D E +++L S GDLRRAITYLQ A RL S+ I +D+
Sbjct: 187 NRLSQIAAAEHISIDDEVVNSLIVNSSGDLRRAITYLQTAHRLSASTDPPTPIIPRDIQE 246
Query: 276 VSG 278
++G
Sbjct: 247 IAG 249
>gi|328794001|ref|XP_003251959.1| PREDICTED: replication factor C subunit 4-like, partial [Apis
mellifera]
Length = 303
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 139/231 (60%), Positives = 162/231 (70%), Gaps = 4/231 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V+DV Q EVV VL L+ + P++LFYGPPGTGKT+T LA A QLFG
Sbjct: 6 PWVEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFG- 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
LYK RVLELNASD+RGI VVR KIK+FA + G G R G CPP+KII+LDEADSMT
Sbjct: 65 SLYKERVLELNASDERGIQVVREKIKSFAQLTAG-GMRDDGKSCPPFKIIVLDEADSMTG 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME S TRF ICNY+SRIIEPL SRC KFRFKPL E + R+ +IC E
Sbjct: 124 AAQAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKE 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS--ITSKDLISVSG 278
E L ++ L + +S GDLRRAIT LQ +L G IT D++ + G
Sbjct: 184 EDLKVEKPVLLKIVEVSGGDLRRAITCLQSITKLKGKDIEITVDDVLEIIG 234
>gi|440465527|gb|ELQ34846.1| replication factor C subunit 2 [Magnaporthe oryzae Y34]
gi|440481017|gb|ELQ61644.1| replication factor C subunit 2 [Magnaporthe oryzae P131]
Length = 323
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 120/183 (65%), Positives = 148/183 (80%), Gaps = 2/183 (1%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PHMLFYGPPGTGKT+T LA+A +LFGPEL KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 7 PHMLFYGPPGTGKTSTVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQL 66
Query: 143 GSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+
Sbjct: 67 TNPPPGYKSKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIID 126
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
PLASRC+KFRFK L +E SR+ I +EG+ L+ A+ L S+GDLR+AIT+LQ A
Sbjct: 127 PLASRCSKFRFKSLDQENARSRLEDIAAKEGVALEDGAVDALIKCSEGDLRKAITFLQSA 186
Query: 261 ARL 263
ARL
Sbjct: 187 ARL 189
>gi|307205986|gb|EFN84112.1| Replication factor C subunit 4 [Harpegnathos saltator]
Length = 360
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/231 (55%), Positives = 157/231 (67%), Gaps = 4/231 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V D+ Q EVV V+ +E + P+MLFYGPPGTGKT+ A A Q+FG
Sbjct: 33 PWVEKYRPKSVDDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG- 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+Y+ R+LELNASDDRGI VVR KIK+FA + + R G CPP+KIIILDEADSMT
Sbjct: 92 SIYRDRILELNASDDRGIQVVRDKIKSFA-LRRANPTRPDGKKCPPFKIIILDEADSMTG 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR ME + TRF +CNY+SRII+P+ SRC KFRFKPLS+E +R+ +ICNE
Sbjct: 151 AAQTALRRIMEKEAHSTRFCLVCNYLSRIIKPITSRCTKFRFKPLSDEKSIARLEYICNE 210
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG--SSITSKDLISVSG 278
E L + L + + S GDLR+A+ LQ RL G IT D + V G
Sbjct: 211 ENLMANRNVLEKIVAASGGDLRQAVMCLQSITRLKGIEYEITVDDALDVIG 261
>gi|13242652|ref|NP_077667.1| EsV-1-182 [Ectocarpus siliculosus virus 1]
gi|13177452|gb|AAK14596.1|AF204951_181 EsV-1-182 [Ectocarpus siliculosus virus 1]
Length = 326
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/233 (51%), Positives = 167/233 (71%), Gaps = 9/233 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP++V+DV H + + RVL +T + PH+LF+GPPGTGKT+T LA+A L G
Sbjct: 2 QPWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLG 61
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ RVLELNASD+RG++VVR KIKTF+ +++ S Q CPP+K++ILDEAD+MT
Sbjct: 62 EGNMRERVLELNASDERGLDVVRDKIKTFSKMSISSFQ----PGCPPFKLVILDEADTMT 117
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTMET+S VTRF +CNY+S+II PLASRCAKFRF L+ + M R+LHIC
Sbjct: 118 ADAQSALRRTMETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLAPKSMKGRLLHICE 177
Query: 229 EEGLNLDAEALSTLSSI---SQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E + + + S L +I S+GD+R A+ LQ ++ +T + ++ ++G
Sbjct: 178 RENIIFENCSRSVLDAIVKSSRGDMRSAVNLLQTVSQ--QPRVTPESIVEIAG 228
>gi|68070283|ref|XP_677053.1| replication factor C, subunit 2 [Plasmodium berghei strain ANKA]
gi|56497014|emb|CAH96737.1| replication factor C, subunit 2, putative [Plasmodium berghei]
Length = 330
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 115/236 (48%), Positives = 160/236 (67%), Gaps = 3/236 (1%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRPK++ D+ HQ + +L ++T N PH++F+GPPGTGKT+ A+AH+L
Sbjct: 2 SNLPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEA 164
FG E RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEA
Sbjct: 62 FGKENINERVLELNASDDRGINVVREKIKAYTRISISKNKINTETNEQLPPWKLVVLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D MTEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L
Sbjct: 122 DMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLL 181
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+IC E +++ ALS + +QGDLRRA++ LQ A S IT ++ VSG P
Sbjct: 182 YICKNENIDISDNALSKIIETTQGDLRRAVSVLQLCA-CIDSKITVDSVLDVSGLP 236
>gi|46108652|ref|XP_381384.1| hypothetical protein FG01208.1 [Gibberella zeae PH-1]
Length = 314
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/190 (62%), Positives = 150/190 (78%), Gaps = 2/190 (1%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKT+T LA+A +L+GP++ KSRVLELNASD+RGI++VR K+K FA + + +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 145 GQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PL
Sbjct: 61 PPPGYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
ASRC+KFRFK L + R+ I +EG+ L+ A+ L S+GDLR+AITYLQ AAR
Sbjct: 121 ASRCSKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGAVDALIKCSEGDLRKAITYLQSAAR 180
Query: 263 LFGSSITSKD 272
L G+S + KD
Sbjct: 181 LVGASASDKD 190
>gi|302925691|ref|XP_003054145.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735086|gb|EEU48432.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 314
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 119/190 (62%), Positives = 149/190 (78%), Gaps = 2/190 (1%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A +L+GPE+ KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 144 -SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
S + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PL
Sbjct: 61 PSPGYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
ASRC+KFRFK L + R+ I +EG+ L+ A+ TL S+GDLR+AIT+LQ AAR
Sbjct: 121 ASRCSKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGAVDTLIKCSEGDLRKAITFLQSAAR 180
Query: 263 LFGSSITSKD 272
L G+ KD
Sbjct: 181 LVGAGTPEKD 190
>gi|324508707|gb|ADY43673.1| Replication factor C subunit 4 [Ascaris suum]
Length = 354
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/214 (57%), Positives = 157/214 (73%), Gaps = 2/214 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q+ PWVEKYRP++V D+ Q+EVV VL L+ A+ P++LFYGPPGTGKT+ A+A+ +
Sbjct: 26 QAVVPWVEKYRPRKVDDIVFQDEVVSVLKKVLKGADLPNLLFYGPPGTGKTSAAVALCRE 85
Query: 106 LF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LF P++Y RVLE+NASD+RGIN+VRT+IK FA AV S G + K+IILDEA
Sbjct: 86 LFKNPDVYSDRVLEMNASDERGINIVRTRIKEFARRAVSSRLPDGSHVLG-LKVIILDEA 144
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT+ AQ ALRRTME S+ TRFF ICNYISRII PL SRCAKFRFKPLS E R+
Sbjct: 145 DAMTDAAQAALRRTMEKESRSTRFFLICNYISRIIPPLTSRCAKFRFKPLSLESQKERLE 204
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+IC +E + ++ AL L + GDLRR++T+LQ
Sbjct: 205 YICEQEDVEVEQAALIELIELCGGDLRRSVTHLQ 238
>gi|299472904|emb|CBN80473.1| EsV-1-182 , RFC small subunit [Ectocarpus siliculosus]
Length = 326
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 123/234 (52%), Positives = 166/234 (70%), Gaps = 10/234 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP++VKDV H + + RVL +T + PH+LF+GPPGTGKT+T LA+A L G
Sbjct: 2 QPWVEKYRPRRVKDVVHHDHLKRVLKGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLG 61
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP-CPPYKIIILDEADSM 167
E + RVLELNASD+RG++VVR KIKTF +++ S Q P CPP+K++ILDEAD+M
Sbjct: 62 EENMRERVLELNASDERGLDVVRDKIKTFCKMSISSFQ-----PGCPPFKLVILDEADTM 116
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMET + VTRF +CNY+S+II PLASRCAKFRF L+ E M R+L+IC
Sbjct: 117 TADAQSALRRTMETQAVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLTPESMKGRLLYIC 176
Query: 228 NEEGLNLDAEALSTLSSI---SQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E + + + L +I S+GD+R A+ LQ ++ +T + ++ V+G
Sbjct: 177 ERENIIFENCSRGVLDAIVKSSRGDMRSAVNLLQTVSQQ-QHRVTPESVVEVAG 229
>gi|313229768|emb|CBY18583.1| unnamed protein product [Oikopleura dioica]
Length = 350
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 131/242 (54%), Positives = 163/242 (67%), Gaps = 8/242 (3%)
Query: 38 KRKMAP-VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGK 95
K+K AP VL PW+EKYRPK V DV QEEVV +L L E P+MLFYGPPGTGK
Sbjct: 19 KKKAAPRVL----PWIEKYRPKGVNDVCAQEEVVAMLKAVLIEGKELPNMLFYGPPGTGK 74
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+T LA+A +FG L RV ELNASD+RGI VVR K+K FA S QR G CP
Sbjct: 75 TSTILAMARDMFG-NLASERVCELNASDERGIAVVREKVKNFAMTTANS-QRADGKKCPN 132
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+K+IILDEADSMT+ AQ ALRRTME YSK TRF +CNY+SRII+P+ SR AKFRF+ L
Sbjct: 133 FKLIILDEADSMTKSAQEALRRTMEVYSKSTRFCLLCNYVSRIIDPITSRTAKFRFRLLP 192
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+E+ +++ HI E + + A+ L S++ GD+RRA+ +LQ RL IT D+
Sbjct: 193 KEIQYNQIRHIREAENVQISENAVEELISVAAGDMRRAVNFLQSLHRLHEDEITPDDVRD 252
Query: 276 VS 277
V+
Sbjct: 253 VA 254
>gi|29841325|gb|AAP06357.1| similar to GenBank Accession Number BC003335 activator 1; 37 kDa
subunit; replication factor C subunit)(RFC37)in Mus
musculus [Schistosoma japonicum]
Length = 364
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 162/243 (66%), Gaps = 16/243 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK + +VA+Q EVV VL + ++ P++LFYGPPGTGKT+ LA+A Q
Sbjct: 22 QKHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQ 81
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP------CPPYKII 159
LFGP LY RVLELNASD+RGI V+R K+K FA VAV S PPYK+I
Sbjct: 82 LFGP-LYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLI 140
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEADSMT AQ ALRRTMET + TRF CNY++RIIEP+ SRCAKFRF+PL E+
Sbjct: 141 ILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIA 200
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS---------SITS 270
+R+ +I + E L++ E L L S+ +GDLR+ IT LQ +L S SITS
Sbjct: 201 RARLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITS 260
Query: 271 KDL 273
+L
Sbjct: 261 SEL 263
>gi|226479998|emb|CAX73295.1| hypothetical protein [Schistosoma japonicum]
Length = 364
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 162/243 (66%), Gaps = 16/243 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRPK + +VA+Q EVV VL + ++ P++LFYGPPGTGKT+ LA+A Q
Sbjct: 22 QKHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQ 81
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP------CPPYKII 159
LFGP LY RVLELNASD+RGI V+R K+K FA VAV S PPYK+I
Sbjct: 82 LFGP-LYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLI 140
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEADSMT AQ ALRRTMET + TRF CNY++RIIEP+ SRCAKFRF+PL E+
Sbjct: 141 ILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIA 200
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS---------SITS 270
+R+ +I + E L++ E L L S+ +GDLR+ IT LQ +L S SITS
Sbjct: 201 RARLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITS 260
Query: 271 KDL 273
+L
Sbjct: 261 SEL 263
>gi|392867577|gb|EAS29182.2| DNA replication factor C subunit Rfc2 [Coccidioides immitis RS]
Length = 322
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 117/192 (60%), Positives = 145/192 (75%), Gaps = 5/192 (2%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A LFGP+LY+SR+LELNASD+RGIN+VR KIK FA + +
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSH 60
Query: 144 ----SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
+ R YPCPP+KIIILDEADSMT+DAQ+ALRRTME +S++TRF +CNY++RII
Sbjct: 61 PPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRII 120
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+PLASRC+KFRFK L +R+ I E L LD + L S+GDLRRAITY+Q
Sbjct: 121 DPLASRCSKFRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQS 180
Query: 260 AARLFGSSITSK 271
AARL GS ++ K
Sbjct: 181 AARLVGSGLSGK 192
>gi|322697954|gb|EFY89728.1| activator 1 41 kDa subunit [Metarhizium acridum CQMa 102]
Length = 314
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/193 (62%), Positives = 150/193 (77%), Gaps = 8/193 (4%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-- 142
MLFYGPPGTGKT+T LA+A +LFGPE+ KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 143 ---GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
G +R YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII
Sbjct: 61 PTPGYSKR---YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 117
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+PLASRC+KFRFK L + R+ I + EG+ L+ A+ L S+GDLR+AIT+LQ
Sbjct: 118 DPLASRCSKFRFKSLDQGNARKRLEEIASAEGVPLEDGAIDALIRCSEGDLRKAITFLQS 177
Query: 260 AARLFGSSITSKD 272
AARL G+S KD
Sbjct: 178 AARLVGASAPGKD 190
>gi|156088043|ref|XP_001611428.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798682|gb|EDO07860.1| conserved hypothetical protein [Babesia bovis]
Length = 336
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/238 (48%), Positives = 165/238 (69%), Gaps = 3/238 (1%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
++ + PWVEKYRP + D+ + + + +E+ + PHM+F+GPPGTGKT+ ALAIA
Sbjct: 1 MKGNVPWVEKYRPASLDDIVFHTNAMTTMRHIVESYDMPHMIFHGPPGTGKTSAALAIAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILD 162
Q++GPE K RVLELNASD+RGINVVR +IKT+ + + S + + G P +K+IILD
Sbjct: 61 QIYGPEGMKERVLELNASDERGINVVRERIKTYTRLNISSNRVNTQTGRVMPNFKMIILD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD +T DAQ ALRR +E +S ++RF ICNY+ +II P+ SRC+ F FKP+S++ R
Sbjct: 121 EADMITPDAQAALRRIIENFSNISRFILICNYVHKIIGPIYSRCSAFHFKPISQDAQIER 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ +IC E L + AL L+ +SQGD+RR++T LQ A LF + +T + + +VSGYP
Sbjct: 181 LRYICTAESLEYEDHALDFLTQVSQGDMRRSVTILQSTASLF-NKVTEEAVRNVSGYP 237
>gi|224158698|ref|XP_002192375.1| PREDICTED: replication factor C subunit 4-like, partial
[Taeniopygia guttata]
Length = 294
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/197 (59%), Positives = 147/197 (74%), Gaps = 2/197 (1%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
P++LFYGPPGTGKT+T LA A +LFGP+L++ RVLELNASD+RGI V+R K+K FA +
Sbjct: 2 PNLLFYGPPGTGKTSTILAAATELFGPDLFRQRVLELNASDERGIQVIREKVKAFAQLT- 60
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
SG G CPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL
Sbjct: 61 ASGSHSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPL 120
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
SRC+KFRFKPLS+ + R+L + +E + + EA+S L +S+GDLR+AIT+LQ A R
Sbjct: 121 TSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAISYLVKVSEGDLRKAITFLQSATR 180
Query: 263 LF-GSSITSKDLISVSG 278
L G IT K + ++G
Sbjct: 181 LMGGKEITEKIITEIAG 197
>gi|397621040|gb|EJK66073.1| hypothetical protein THAOC_13022 [Thalassiosira oceanica]
Length = 363
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/265 (48%), Positives = 167/265 (63%), Gaps = 33/265 (12%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++ PWVEKYRP+ ++DV+HQ E++ LTN +ET PH+LFYGPPG +T QL
Sbjct: 6 TATPWVEKYRPRSLEDVSHQTEIISTLTNAVETNRLPHLLFYGPPGGRFHSTHKC--RQL 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----------------GSGQRRGG 150
+ P K RVLELNASD+RGI+VVR KIK FA++A+ G G+
Sbjct: 64 YEPSQLKRRVLELNASDERGISVVRDKIKHFASLAIGSSSGGGSKKNFFAKKGDGEAMDA 123
Query: 151 -------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
YP PP+KIIILDEAD++T DAQ ALRR +E YSKVTRF ICNY++RIIEPLA
Sbjct: 124 EEAPSKKYPNPPFKIIILDEADTVTRDAQAALRRVIEAYSKVTRFVLICNYVTRIIEPLA 183
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNL----DAEALSTLSSISQGDLRRAITYLQG 259
SRCAKFRF PL E M R+++I +E + +AE + + ++SQGD+RRA+T LQ
Sbjct: 184 SRCAKFRFAPLPEASMKERIMYISKQEQCHFEDEKEAEVIDEILTLSQGDMRRAVTTLQS 243
Query: 260 AARLF----GSSITSKDLISVSGYP 280
A L G I + ++G P
Sbjct: 244 AHSLSGGKDGDPIKKASIAEMAGLP 268
>gi|71033715|ref|XP_766499.1| replication factor C subunit 2 [Theileria parva strain Muguga]
gi|68353456|gb|EAN34216.1| replication factor C subunit 2, putative [Theileria parva]
Length = 335
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/233 (50%), Positives = 162/233 (69%), Gaps = 3/233 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKISDVIFQTQAVSIMEQIVETFNMPHMIFHGPPGTGKTSAALAMARQIYGL 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADSM 167
E + RVLELNASD+RGI+VVR +IKT+ + + + + P YK+IILDEAD +
Sbjct: 68 EGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMI 127
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E YS ++RF ICNY+ +II P+ SRC+ F FKP+ R+ +IC
Sbjct: 128 TADAQAALRRVIENYSSISRFVLICNYLHKIIGPIYSRCSVFHFKPIETNSQVDRLKYIC 187
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
N+EG+ D +AL L+++S GD+R++IT LQ A L+ + IT + SVSG P
Sbjct: 188 NQEGITFDQKALEFLTTVSSGDMRKSITILQSTACLY-NEITENAINSVSGKP 239
>gi|322705612|gb|EFY97196.1| activator 1 41 kDa subunit [Metarhizium anisopliae ARSEF 23]
Length = 314
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/193 (62%), Positives = 150/193 (77%), Gaps = 8/193 (4%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV---- 140
MLFYGPPGTGKT+T LA+A +LFGPE+ KSRVLELNASD+RGI++VR K+K FA +
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 141 -AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
A G ++ YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII
Sbjct: 61 PAPGYSKK---YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 117
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+PLASRC+KFRFK L + R+ I + EG+ L+ A+ L S+GDLR+AIT+LQ
Sbjct: 118 DPLASRCSKFRFKSLDQGNARKRLEEIASAEGVPLEDGAIDALIRCSEGDLRKAITFLQS 177
Query: 260 AARLFGSSITSKD 272
AARL G+S KD
Sbjct: 178 AARLVGASAPGKD 190
>gi|380471924|emb|CCF47039.1| replication factor C subunit 2 [Colletotrichum higginsianum]
Length = 315
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 116/184 (63%), Positives = 145/184 (78%), Gaps = 2/184 (1%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A +L+GPE+ KSRVLELNASD+RGI++VR K+K FA + +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMMKSRVLELNASDERGISIVREKVKDFARMQLTN 60
Query: 144 -SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+ + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF ICNY++RII+PL
Sbjct: 61 PTNDYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
ASRC+KFRFK L + R+ I EG+ L+ AL L S+GDLR+AIT+LQ AAR
Sbjct: 121 ASRCSKFRFKSLDQGNAKKRLEDIAENEGVQLEDGALDALIKCSEGDLRKAITFLQSAAR 180
Query: 263 LFGS 266
L G+
Sbjct: 181 LVGA 184
>gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H]
gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi
strain H]
Length = 330
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 159/233 (68%), Gaps = 3/233 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGR 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
+ RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEAD M
Sbjct: 65 DNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + +V ++L+IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPIDVKKEKLLYIC 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EG+N+ +AL + +QGDLRRA++ LQ + IT + ++ VSG P
Sbjct: 185 KSEGINILDDALDKIIETTQGDLRRAVSILQLCS-CIDPMITLESVLDVSGLP 236
>gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax Sal-1]
gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax]
Length = 330
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 158/233 (67%), Gaps = 3/233 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGR 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
+ RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEAD M
Sbjct: 65 DNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L+IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKDKLLYIC 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EG+N+ +AL + +QGDLRRA++ LQ + IT + ++ VSG P
Sbjct: 185 KSEGINILDDALDKIIETTQGDLRRAVSILQLCS-CIDPMITLESVLDVSGLP 236
>gi|238484697|ref|XP_002373587.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
gi|220701637|gb|EED57975.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
Length = 320
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/188 (62%), Positives = 141/188 (75%), Gaps = 5/188 (2%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A LFGP LY+SR+LELNASD+RGI +VR K+K FA V +
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIAIVREKVKDFARVQLSH 60
Query: 144 -SGQRRG---GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
+G + YPCPP+KIIILDEADSMT+DAQ+ALRRTMETYSK+TRF +CNY++RII
Sbjct: 61 PTGVDKSYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRII 120
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EPLASRC+KFRFKPL R+ I E L L+ + L S GDLRRAITY+Q
Sbjct: 121 EPLASRCSKFRFKPLDNSAAGDRLAQIAKLENLELEDGVVDKLIQCSDGDLRRAITYMQS 180
Query: 260 AARLFGSS 267
ARL G++
Sbjct: 181 GARLVGAT 188
>gi|390371040|dbj|GAB64921.1| replication factor C subunit 2 [Plasmodium cynomolgi strain B]
Length = 342
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 158/233 (67%), Gaps = 3/233 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 17 PWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGR 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSM 167
+ RVLELNASDDRGINVVR KIK + +++ + PP+K+++LDEAD M
Sbjct: 77 DNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADMM 136
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L+IC
Sbjct: 137 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLLYIC 196
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EG+N+ +AL + +QGDLRRA++ LQ + IT + ++ VSG P
Sbjct: 197 KSEGINILDDALGKIIETTQGDLRRAVSILQLCS-CIDPMITLESVLDVSGLP 248
>gi|443926001|gb|ELU44750.1| replication factor C [Rhizoctonia solani AG-1 IA]
Length = 1949
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 121/217 (55%), Positives = 151/217 (69%), Gaps = 23/217 (10%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
MLFYGPPGTGKT+T LA++ QLFGPEL+++RVLELNASD+RGI++VR KIK FA +
Sbjct: 1 MLFYGPPGTGKTSTILALSRQLFGPELFRTRVLELNASDERGISIVREKIKNFARQTPRA 60
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-------- 196
+ YPCPPYKIIILDEADSMT+DAQ ALRR ME Y+K+TRF +CNY++
Sbjct: 61 AEANSKYPCPPYKIIILDEADSMTQDAQAALRRIMENYAKITRFCLVCNYVTRCVELNLT 120
Query: 197 ----------RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS 246
RIIEPLASRC+KFRF PL SR+ HI E +++ EA++ L S S
Sbjct: 121 GLFPSKYLVNRIIEPLASRCSKFRFHPLDVSSTRSRLEHIVKLENIDISPEAVTALISTS 180
Query: 247 QGDLRRAITYLQGAARLFGS-----SITSKDLISVSG 278
GDLRR+ITYLQ AARL S SI++ D+ ++G
Sbjct: 181 DGDLRRSITYLQSAARLSASQEPSPSISASDIQEIAG 217
>gi|341896367|gb|EGT52302.1| hypothetical protein CAEBREN_14732 [Caenorhabditis brenneri]
Length = 353
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 150/217 (69%), Gaps = 3/217 (1%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+AHQ+EVV +L L+ + PH+LFYGPPGTGKT+TALA HQLF
Sbjct: 36 WTEKYRPKTLDDIAHQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSTALAFCHQLFPKS 95
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ RVL+LNASD+RGI+VVR K++ F+ ++GSG G KIIILDE D+MT +
Sbjct: 96 IFHDRVLDLNASDERGISVVRQKVQAFSKTSLGSG---GKEDVLKLKIIILDEVDAMTRE 152
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+A+RR +E YSK TRF ICNY+SR+I P+ SRCAKFRFK L EV R+ IC+ E
Sbjct: 153 AQSAMRRVIEDYSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLRTICDAE 212
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
G + E L + ++GDLRRA+ LQ + + S
Sbjct: 213 GAPMTDEELKQVMEYAEGDLRRAVCTLQSLSPILKSD 249
>gi|115384904|ref|XP_001208999.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
gi|114196691|gb|EAU38391.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
Length = 319
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 140/187 (74%), Gaps = 5/187 (2%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143
MLFYGPPGTGKT+T LA+A LFGP LY+SR+LELNASD+RGI +VR KIK FA +
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRDKIKNFARSQLSH 60
Query: 144 ----SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
S + YPCPP+KIIILDEADSMT+DAQ+ALRRTME YS++TRF +CNY++RII
Sbjct: 61 SSGMSEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRII 120
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+PLASRC+KFRFK L R+ HI E L L++ + L S+GDLRRAITY+Q
Sbjct: 121 DPLASRCSKFRFKALDNSAAGERLEHIAKLENLTLESGVVDKLIQCSEGDLRRAITYMQS 180
Query: 260 AARLFGS 266
AARL G+
Sbjct: 181 AARLVGA 187
>gi|312377422|gb|EFR24254.1| hypothetical protein AND_11259 [Anopheles darlingi]
Length = 328
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 126/221 (57%), Positives = 160/221 (72%), Gaps = 4/221 (1%)
Query: 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119
V+DV Q EVV VL +L TA+ P++L YGPPGTGKT+T LA A QLFG +++K R+LEL
Sbjct: 34 VEDVVEQAEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLFG-DMFKERILEL 92
Query: 120 NASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
NASDDRGI V+R K+KTFA + SG R G PCPP+KI+ILDEAD+MT AQ ALRRTM
Sbjct: 93 NASDDRGIAVIRNKVKTFAQLT-ASGTRADGKPCPPFKIVILDEADAMTHAAQAALRRTM 151
Query: 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239
E +K TRF +CNY+SRIIEP+ SRC KFRFKPL EE + R+ +IC++E + +D
Sbjct: 152 EKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEERIIERLRYICDQEQVTVDEAVY 211
Query: 240 STLSSISQGDLRRAITYLQGAARL--FGSSITSKDLISVSG 278
+ IS GD+RRAIT LQ RL G+ I +D++ +SG
Sbjct: 212 KDIVDISGGDMRRAITTLQSCHRLKGAGARIERQDILEMSG 252
>gi|170577995|ref|XP_001894218.1| replication factor C, 37kDa subunit [Brugia malayi]
gi|158599258|gb|EDP36928.1| replication factor C, 37kDa subunit, putative [Brugia malayi]
Length = 315
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 119/210 (56%), Positives = 150/210 (71%), Gaps = 2/210 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-G 108
PWVEKYRP++V++VA Q EVV VL L+ A+ P++LFYGPPGTGKT+ A+A+ QLF
Sbjct: 22 PWVEKYRPRKVEEVAFQNEVVSVLKKVLQGADLPNLLFYGPPGTGKTSAAIALCRQLFRN 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ Y+ RV+E+NASD+RGIN+VR KIK FA AV S G P K+IILDEAD+MT
Sbjct: 82 TDTYRDRVMEMNASDERGINIVRNKIKEFARRAVSS-HLPDGSPVVGLKVIILDEADAMT 140
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRRTME S+ TRFF ICNYI+RII+PL SRCAKFRFK +S E R+ IC
Sbjct: 141 TPAQAALRRTMERESRTTRFFLICNYITRIIDPLTSRCAKFRFKSISSESQEKRLKWICQ 200
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + D A+S L + GD+R+++T LQ
Sbjct: 201 NENIEFDPLAISELIELCDGDMRKSVTALQ 230
>gi|339257864|ref|XP_003369118.1| replication factor C subunit 4 [Trichinella spiralis]
gi|316966678|gb|EFV51223.1| replication factor C subunit 4 [Trichinella spiralis]
Length = 357
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/241 (51%), Positives = 154/241 (63%), Gaps = 27/241 (11%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVL--------------------------TNTLETA 80
S + + RPK V D+A+Q+EVV VL N L+
Sbjct: 5 SKELTITSSRPKIVDDIAYQDEVVAVLKKSLTSNDKLRLCLMILYFVEHLIRFANILDNY 64
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
P++LFYGPPGTGKT+ LA+ Q+FG E+Y+ RVLELNASD+RGI+V+R K+K F+
Sbjct: 65 FIPNLLFYGPPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQF 124
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
A S GG CPP K++ILDEADSMT+ AQ ALRRTME SK TRF ICNYIS IIE
Sbjct: 125 A-ASEITEGGKKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIE 183
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ SRCAKFRFKPL+ E+ R+ IC E +++D ALS+L S GDLRRAI LQ A
Sbjct: 184 PITSRCAKFRFKPLTLEIQIERLRKICENESVSIDDAALSSLISFCDGDLRRAINTLQSA 243
Query: 261 A 261
A
Sbjct: 244 A 244
>gi|312075109|ref|XP_003140271.1| replication factor C [Loa loa]
gi|307764567|gb|EFO23801.1| replication factor C [Loa loa]
Length = 308
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/210 (57%), Positives = 148/210 (70%), Gaps = 2/210 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-G 108
PWVEKYRP++V++VA Q EVV VL LE A+ P++LFYGPPGTGKT+ A+A+ QLF
Sbjct: 22 PWVEKYRPRKVEEVAFQNEVVSVLKKVLEGADLPNLLFYGPPGTGKTSAAIALCRQLFRN 81
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E Y RV+E+NASD+RGIN+VR KIK FA AV S G P K+IILDEAD+MT
Sbjct: 82 TETYHDRVMEMNASDERGINIVRNKIKEFARRAVSS-HLPDGSPVVGLKVIILDEADAMT 140
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRRTME S+ TRFF ICNYI+RII+PL SRCAKFRFK +S E R+ IC
Sbjct: 141 TPAQAALRRTMEKESRTTRFFLICNYITRIIDPLTSRCAKFRFKSISSESQGKRLEWICQ 200
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + D A+ L + GD+R+++T LQ
Sbjct: 201 NENIEFDPLAIDELIELCDGDMRKSVTALQ 230
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/217 (54%), Positives = 151/217 (69%), Gaps = 9/217 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++ WVEKYRPK + +V Q+E+++ L + ++ N PH+LF GPPGTGKT TA+A+A L
Sbjct: 2 ETEIWVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FG E+++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEAD+
Sbjct: 62 FG-EVWRENFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEADA 112
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
+T DAQ ALRRTME YSKV RF CNY+SRIIEP+ SRCA F+FKP+ +E M R+ I
Sbjct: 113 LTADAQAALRRTMEMYSKVCRFILSCNYVSRIIEPIQSRCAVFKFKPVPKEAMKKRLKEI 172
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
EGL +D EAL L IS GD R+AI LQGAA L
Sbjct: 173 AENEGLEIDDEALEVLIYISGGDFRKAINALQGAAAL 209
>gi|124801405|ref|XP_001349685.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
gi|3845290|gb|AAC71957.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
Length = 330
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 157/236 (66%), Gaps = 3/236 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSM 167
E RVLELNASDDRGINVVR KIK + +++ + P +K+++LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L+IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYIC 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGG 283
E +++ +AL + ++GDLRRA++ LQ + + IT ++ VSG P+
Sbjct: 185 QNENIDIVDDALEKIIETTEGDLRRAVSILQLCS-CINTKITLNSVLDVSGLPSDN 239
>gi|11559504|gb|AAG37987.1|AF071409_1 replication factor C subunit 2 [Plasmodium falciparum]
Length = 330
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 157/236 (66%), Gaps = 3/236 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ HQ V +L + T N PH++F+GPPGTGKT+ A+AH+LFG
Sbjct: 5 PWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSM 167
E RVLELNASDDRGINVVR KIK + +++ + P +K+++LDEAD M
Sbjct: 65 ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TEDAQ+ALRR +E YS VTRF ICNYI +I +P+ SRC+ +RF+ + + ++L+IC
Sbjct: 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYIC 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGG 283
E +++ +AL + ++GDLRRA++ LQ + + IT ++ VSG P+
Sbjct: 185 QNENIDIVDDALEKIIETTEGDLRRAVSILQLCS-CINTKITLNSVLDVSGLPSDN 239
>gi|403221343|dbj|BAM39476.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 336
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/234 (50%), Positives = 160/234 (68%), Gaps = 4/234 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKLSDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGL 67
Query: 110 ELYKSRVLELNASDDRG-INVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADS 166
E + RVLELNASD+RG I+VVR +IKT+ + + + + P YKIIILDEAD
Sbjct: 68 EGMRERVLELNASDERGRIDVVRDRIKTYTRINISNNKINPETNRVMPNYKIIILDEADM 127
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
+T DAQ ALRR +E YS ++RF ICNY+ +II P+ SRC+ F FKP+ R+ +I
Sbjct: 128 ITADAQAALRRVIENYSGISRFILICNYLHKIIGPIYSRCSVFHFKPIDTSSQVKRLEYI 187
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
C++EG+ D +AL L+ +S GD+R+ IT LQ A L+ + IT + SVSG P
Sbjct: 188 CSKEGIKYDTKALEFLTKVSSGDMRKGITILQSTASLY-NEITENAVYSVSGQP 240
>gi|154341867|ref|XP_001566885.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064210|emb|CAM40408.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 296
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 116/202 (57%), Positives = 147/202 (72%), Gaps = 6/202 (2%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PH LF+GPPGTGKTT+ LA+AH+LFGP+ +SRV ELNASDDRGINVVR K+K FA AV
Sbjct: 2 PHFLFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAV 61
Query: 143 GSG-----QRRGG-YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
S Q G YP PP+K+IILDEAD++ DAQ ALRR ME +S VTRF +CNY+S
Sbjct: 62 SSNGSSVTQSDGKVYPVPPFKLIILDEADALLPDAQGALRRMMEDFSDVTRFCILCNYVS 121
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
RII+P+ASRCAK+RFKPL + + R+ ++ EG+ L +L L ++S GDLR AI +
Sbjct: 122 RIIDPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLQALDTVSGGDLRLAIMH 181
Query: 257 LQGAARLFGSSITSKDLISVSG 278
LQ A + G+ +T +D ISVSG
Sbjct: 182 LQSAQKANGNDLTKEDFISVSG 203
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 119/213 (55%), Positives = 147/213 (69%), Gaps = 9/213 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +QEE+VR L +E N PH+LF GPPGTGKTT A A+AH LFG E
Sbjct: 10 WAEKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHALAHDLFG-E 68
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI +RTK+K FA R P P+KI++LDEAD+MT D
Sbjct: 69 NYRQYMLELNASDERGIETIRTKVKEFA--------RSRTPPGIPFKIVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PL +E + +R+ IC +E
Sbjct: 121 AQQALRRLMEMYTASTRFILIANYPSKIIEPIQSRCAIFRFTPLKKEDVVARLKWICEQE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
G D EAL T+ IS+GD+RRAI LQ AA L
Sbjct: 181 GCQYDEEALETIYEISEGDMRRAINILQAAAAL 213
>gi|84998148|ref|XP_953795.1| replication factor C subunit (RPC2 ) [Theileria annulata]
gi|65304792|emb|CAI73117.1| replication factor C subunit (RPC2 homologue) , putative [Theileria
annulata]
Length = 336
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 160/236 (67%), Gaps = 8/236 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKISDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGL 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADSM 167
E + RVLELNASD+RGI+VVR +IKT+ + + + + P YK+IILDEAD +
Sbjct: 68 EGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMI 127
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E YS ++RF ICNY+ +II P+ SRC+ F FKP+ R+ +IC
Sbjct: 128 TADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCSVFHFKPIETNSQIDRLKYIC 187
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQ---GAARLFGSSITSKDLISVSGYP 280
N+EG+ D + L+T+SS GD+R++IT LQ G+ + IT + SVSG P
Sbjct: 188 NQEGITFDPKFLTTISS---GDMRKSITILQVILGSTACLYNEITENAIYSVSGKP 240
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 155/229 (67%), Gaps = 11/229 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ QE++VR L +E N PHMLF GPPGTGKTT ALA+AH L+G E
Sbjct: 9 WAEKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALAHDLYG-E 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+RTK+K FA R P P+K++ILDEAD+MT D
Sbjct: 68 KYRQYILELNASDERGIDVIRTKVKEFA--------RSRTPPTVPFKLVILDEADNMTAD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS TRF + N+ S+IIEP+ SRC FRF+PL ++ + R+ +IC +E
Sbjct: 120 AQQALRRLMEMYSTTTRFILLANFPSKIIEPVQSRCVYFRFRPLPKDKVIERLKYICQKE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279
G+ + +AL + +IS+GD+R+AI LQ AA L +T + GY
Sbjct: 180 GVQCEEDALEEIYNISEGDMRKAINILQAAAAL--GKVTKDAVYKAIGY 226
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/230 (51%), Positives = 154/230 (66%), Gaps = 12/230 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ QEEV + L+T N PHMLFYGPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERIKQFLKTGNMPHMLFYGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNASD+RGI +R ++K FA A +G PYK++ILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGITTIRERVKEFARTAPMGKA---------PYKLVILDEADNMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y+ VTRF I NY+SRII+P+ SRCA FRF PL ++ + R+ I ++
Sbjct: 118 DAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLREIASK 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279
EG+ + EAL + +SQGD+R+AI LQ AA IT + + GY
Sbjct: 178 EGVKVTNEALEAIWDVSQGDMRKAINTLQAAAAT-AKEITPEVIYKTVGY 226
>gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae]
gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae]
Length = 335
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 146/216 (67%), Gaps = 3/216 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q W EKYRPK + D+AHQEEVV +L L+ + PH+LFYGPPGTGKT+TALA Q
Sbjct: 13 QKVLTWTEKYRPKTLDDIAHQEEVVTMLKGALQGKDLPHLLFYGPPGTGKTSTALAFCRQ 72
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
LF +++ RVL+LNASD+RGI+VVR KI+ F+ +GS + KIIILDE D
Sbjct: 73 LFPSSIFRDRVLDLNASDERGISVVRQKIQAFSKTTLGSSNKEDVL---RLKIIILDEVD 129
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT +AQ A+RR +E +SK TRF ICNY+SR+I P+ SRCAKFRFK L EV R+
Sbjct: 130 AMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLRT 189
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
IC+ EG + + L + S+GDLRRA+ LQ A
Sbjct: 190 ICDAEGTPMSEDELKQVMEYSEGDLRRAVCTLQSLA 225
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/217 (53%), Positives = 150/217 (69%), Gaps = 9/217 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
IC +EG+ + + L L IS GD R+AI LQGAA
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAA 208
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/217 (53%), Positives = 150/217 (69%), Gaps = 11/217 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ WVEKYRP+ +K+V QEEV++ L +E N PH+LF GPPGTGKT +A+A+A LF
Sbjct: 5 AEIWVEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHLLFAGPPGTGKTASAIALARDLF 64
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADS 166
G E ++ +E+NASD+RGI+VVR KIK FA A +G P+KII LDEAD+
Sbjct: 65 G-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGDA---------PFKIIFLDEADA 114
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
+T DAQ ALRRTME YSK+ RF CNY+SRIIEP+ SRCA F+F+P+ E M R+L I
Sbjct: 115 LTPDAQAALRRTMEMYSKICRFILSCNYVSRIIEPIQSRCAVFKFRPVPPEAMRKRLLEI 174
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
C EG+ + + L L +S GD R+AI LQGAA L
Sbjct: 175 CENEGVKITEDGLEALIYVSNGDFRKAINALQGAAAL 211
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 151/219 (68%), Gaps = 9/219 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
IC +EG+ + + L L IS GD R+AI LQGAA +
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI 210
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/230 (52%), Positives = 153/230 (66%), Gaps = 12/230 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ QEEV + L+T N PHMLFYGPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERVKQLLKTGNMPHMLFYGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNASD+RGI +R ++K FA A +G PYK+IILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGITTIRERVKEFARTAPMGKA---------PYKLIILDEADNMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y+ VTRF I NY+SRII+P+ SRCA FRF PL ++ + R+ I +
Sbjct: 118 DAQQALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLRDIASR 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279
EG+ + EAL + ISQGD+R+AI LQ AA IT + + GY
Sbjct: 178 EGVKVTDEALEAIWDISQGDMRKAINTLQ-AATATAREITPEVVYKTVGY 226
>gi|428673231|gb|EKX74144.1| replication factor C subunit 2, putative [Babesia equi]
Length = 228
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 148/211 (70%), Gaps = 2/211 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DV Q + V ++ +ET N PHM+F+GPPGTGKT+ ALA+A Q++G
Sbjct: 8 PWVEKYRPKKLSDVVFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGA 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADSM 167
E + RVLELNASD+RGI+VVR +IKT+ + + + + P YK+IILDEAD +
Sbjct: 68 EGMRERVLELNASDERGIDVVRDRIKTYTRINISNNKINPETKRVMPNYKMIILDEADMI 127
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E YS ++RF ICNY+ +II P+ SRC+ F FKP+ + R+ +IC
Sbjct: 128 TSDAQAALRRVIENYSNISRFILICNYLHKIIGPIYSRCSAFHFKPIEQNSQVDRLEYIC 187
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+EG+ AL L+ ISQGD+R++IT LQ
Sbjct: 188 KQEGIAYTTSALQFLTKISQGDMRKSITILQ 218
>gi|195345297|ref|XP_002039206.1| GM22851 [Drosophila sechellia]
gi|194134432|gb|EDW55948.1| GM22851 [Drosophila sechellia]
Length = 326
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 119/211 (56%), Positives = 148/211 (70%), Gaps = 2/211 (0%)
Query: 21 QKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
Q F T S + D+ + A + PWVEKYRP+ V DV Q EVV VL +E
Sbjct: 2 QAFLKTGKSTAGTGDKSQGAPAARRKLPAPWVEKYRPRNVDDVVEQSEVVAVLRKCVEGG 61
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
+ P+ML YGPPGTGKT+T LA + Q+FG +++K R+LELNASD+RGINVVRTKIK F+ +
Sbjct: 62 DLPNMLLYGPPGTGKTSTILAASRQIFG-DMFKDRILELNASDERGINVVRTKIKNFSQI 120
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ S R G PCPP+KIIILDEADSMT AQ+ALRRTME S+ TRF ICNY+SRII
Sbjct: 121 S-ASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIV 179
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
P+ SRC+KFRFK L E+ + R+ +IC EG
Sbjct: 180 PITSRCSKFRFKALGEDKVIDRLKYICEMEG 210
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 159/230 (69%), Gaps = 10/230 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP+++ D+ QE +++ L + ++T + PH+LF GPPGTGKTT+ALA+A +LF
Sbjct: 12 EKPWVEKYRPQRLDDIVGQEHIIKRLKHYVKTGSMPHLLFAGPPGTGKTTSALALARELF 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 72 G-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADAL 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ ALRRTME +S RF NY SRIIEP+ SRCA FRF+PLS+E ++ R+ +I
Sbjct: 123 TQDAQQALRRTMEMFSNNVRFILSANYSSRIIEPIQSRCAIFRFRPLSDEDVAKRLKYIA 182
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+EGL L E L + +++GDLRRAI LQ AA L IT +++ +V+
Sbjct: 183 EQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAAL-DKKITDENVFTVA 231
>gi|300121957|emb|CBK22531.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/219 (54%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119
+ DV+HQEE + L +++ N PH+LFYGPPGTGKT+T LA+ H+LFGP+L RVLE+
Sbjct: 1 MDDVSHQEEALNALRRSVKEGNLPHLLFYGPPGTGKTSTILALTHELFGPDL-SDRVLEM 59
Query: 120 NASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
NASD+RGI+V+R K+ FA +V Q GYP PPYKIII+DEADS+T DAQ+ALRR M
Sbjct: 60 NASDERGIDVIREKVILFARQSVR--QSIPGYPSPPYKIIIMDEADSLTMDAQSALRRVM 117
Query: 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239
E YS+VTRF FICNYIS+II L+SRCA+F F L + R+ IC EE + ++ EAL
Sbjct: 118 EQYSRVTRFCFICNYISKIIPALSSRCARFEFGALPRGSVLERLSFICGEEKIEIENEAL 177
Query: 240 STLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
+ S+GDLR I LQ A + G IT KDL S++
Sbjct: 178 DFIFDHSRGDLRAGIQLLQNAETVNRGKKITVKDLESIT 216
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 157/230 (68%), Gaps = 10/230 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP+++ D+ QE +V+ L + +T + PH+LF GPPGTGKT+ ALA+A +LF
Sbjct: 15 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGTGKTSAALALARELF 74
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 75 G-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADAL 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL++E ++ R+ +I
Sbjct: 126 TQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRIRYIA 185
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+EGL L E L + +++GDLRRAI LQ AA L IT +++ V+
Sbjct: 186 EQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAAL-DKKITDENVFLVA 234
>gi|302502708|ref|XP_003013315.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
gi|291176878|gb|EFE32675.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
Length = 326
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 112/188 (59%), Positives = 140/188 (74%), Gaps = 6/188 (3%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-- 142
MLFYG PGTGKT+T LA++ LFGP L +SRVLELNASD+RGIN+VR KIK FA + +
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLFQ 60
Query: 143 --GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
R YPCPP+KIIILDEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+
Sbjct: 61 PPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIID 120
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ASRC+KFRFK L SR++ I E L+L+ + TL S GDLR+AIT++Q +
Sbjct: 121 PVASRCSKFRFKVLDGSAAQSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSS 180
Query: 261 ARL--FGS 266
ARL +GS
Sbjct: 181 ARLARYGS 188
>gi|302665246|ref|XP_003024235.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
gi|291188282|gb|EFE43624.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
Length = 336
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 112/188 (59%), Positives = 140/188 (74%), Gaps = 6/188 (3%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-- 142
MLFYG PGTGKT+T LA++ LFGP L +SRVLELNASD+RGIN+VR KIK FA + +
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQ 60
Query: 143 --GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
R YPCPP+KIIILDEADSMT DAQ+ALRRTME YS++TRF +CNY++RII+
Sbjct: 61 PPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIID 120
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
P+ASRC+KFRFK L SR++ I E L+L+ + TL S GDLR+AIT++Q +
Sbjct: 121 PVASRCSKFRFKVLDGSAAQSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSS 180
Query: 261 ARL--FGS 266
ARL +GS
Sbjct: 181 ARLARYGS 188
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 153/223 (68%), Gaps = 11/223 (4%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ VL+ WVEKYRP+ + D+ Q+ VV L ++ N PH+LF GPPGTGKTT A
Sbjct: 1 MSSVLE--MLWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAH 58
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A+AH LFG E Y+ +LELNASD+RGINV+R K+K FA R P P+KI++
Sbjct: 59 ALAHDLFG-ENYRQYMLELNASDERGINVIREKVKEFA--------RSRTPPEIPFKIVL 109
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT DAQ ALRR ME YS VTRF I NY S+II+P+ SRCA FRF+PLS++ +
Sbjct: 110 LDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVI 169
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
R+ +I EG++ + EAL + IS+GD+R+AI LQ A+ L
Sbjct: 170 ERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYL 212
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 155/230 (67%), Gaps = 10/230 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP+++ D+ QE +V+ L + ++T + PH+LF GPPG GKTT ALA+A +LF
Sbjct: 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 72 G-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADAL 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL +E ++ R+ +I
Sbjct: 123 TQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIA 182
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
EGL L E L + I++GD+RRAI LQ AA L IT +++ V+
Sbjct: 183 ENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDENVFMVA 231
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/220 (51%), Positives = 150/220 (68%), Gaps = 9/220 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +QEE+V L ++ N PH+LF GPPGTGKTT A +AH LFG E
Sbjct: 13 WAEKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-E 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+R+K+K FA V + P+KI++LDEAD+MT D
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVTAN--------IPFKIVLLDEADNMTAD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PL +E + SR+ I N+E
Sbjct: 124 AQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIANQE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
+ +D EAL + +S+GD+RRAI LQ AA L ++ S
Sbjct: 184 KVEVDEEALEAIHDLSEGDMRRAINILQAAAALGRVTVDS 223
>gi|17554730|ref|NP_498521.1| Protein RFC-4 [Caenorhabditis elegans]
gi|1703051|sp|P53016.1|RFC4_CAEEL RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|351049703|emb|CCD63405.1| Protein RFC-4 [Caenorhabditis elegans]
Length = 334
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/231 (49%), Positives = 150/231 (64%), Gaps = 7/231 (3%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV K VL W EKYRPK + D+A+Q+EVV +L L+ + PH+LFYGPPGTGK
Sbjct: 6 EVDNKRPKVLT----WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGK 61
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+ ALA QLF ++ RVL+LNASD+RGI VVR KI++F+ ++G R
Sbjct: 62 TSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLK--- 118
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
KIIILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR+I P+ SRCAKFRFK L
Sbjct: 119 LKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLP 178
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
E+ R+ IC+ EG + + L + S+GDLRRA+ LQ A + S
Sbjct: 179 AEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKS 229
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 156/230 (67%), Gaps = 10/230 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP++++D+ QE +V+ L + ++T + PH+LF GPPG GKTT ALA+A +LF
Sbjct: 12 EKPWVEKYRPQRLEDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 72 G-EHWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADAL 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL++ ++ R+ +I
Sbjct: 123 TQDAQQALRRTMEMFSTNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDNDIAKRIKYIA 182
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
EGL L + L L +++GDLRRAI LQ AA L IT +++ V+
Sbjct: 183 ENEGLELTEDGLQALLYVAEGDLRRAINVLQAAAAL-DRKITDENVFLVA 231
>gi|449017476|dbj|BAM80878.1| replication factor C subunit 4 [Cyanidioschyzon merolae strain 10D]
Length = 359
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/231 (51%), Positives = 153/231 (66%), Gaps = 18/231 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL----------ETANCPHMLFYGPPGTGK 95
++QPWVEKYRP+++ DV Q E +R L L + A+ PH+LFYGPPGTGK
Sbjct: 7 HATQPWVEKYRPRRLDDVTQQHETIRALKQLLYGSGGSSLTEKVASLPHLLFYGPPGTGK 66
Query: 96 TTTALAIAHQLF----GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
TTTALA+ +LF E ++RVLELNASD+RGI VVR KIK FA ++ +
Sbjct: 67 TTTALALCRELFQNITNRETLQNRVLELNASDERGIRVVREKIKRFAQSSI---EESVDA 123
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
P +KI+ILDEAD++T DAQ ALRRT+E +S+ TRF ICNY+SR+I PLASRCAKFRF
Sbjct: 124 QVPGFKIVILDEADAITADAQTALRRTIEVHSRTTRFVLICNYLSRVIPPLASRCAKFRF 183
Query: 212 KPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSISQGDLRRAITYLQGAA 261
K L + + +R+ HI EG+ L EA L+ + GDLRRA+ LQ A
Sbjct: 184 KALEDGAVIARLEHIARTEGMGPLPPEASRLLAKAAAGDLRRAVNLLQSCA 234
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 148/220 (67%), Gaps = 9/220 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ QEE+V L ++ N PH+LF GPPGTGKTT A +AH LFG E
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-E 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+R+K+K FA V + P+KI++LDEAD+MT D
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVAAN--------IPFKIVLLDEADNMTAD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PL +E + SR+ I +E
Sbjct: 124 AQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
+ +D EAL + +S+GD+RRAI LQ AA L ++ S
Sbjct: 184 KVEIDEEALEAIHDLSEGDMRRAINILQAAAALGKVTVDS 223
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 154/229 (67%), Gaps = 10/229 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GP 109
WVEKYRPK + DV Q++++R L +E + PH+LF GP GTGKTTTALA+A+ L+
Sbjct: 6 WVEKYRPKTLDDVVGQDDIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLYKSE 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL + LELNASD+RGI+ +RTKIK FA A + P+KII LDEAD++T
Sbjct: 66 ELVAANYLELNASDERGIDTIRTKIKDFAKTA--------PFGEVPFKIIHLDEADNLTA 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME YS TRF F CNY S+IIEP+ SRCA FRF P+ EE + +R++ I
Sbjct: 118 DAQQALRRIMEMYSATTRFIFACNYSSKIIEPIQSRCAVFRFGPIPEEAIKNRLIMIAER 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
EGL + +S + +++GDLR+AI LQ A+ + S++ SK + V+G
Sbjct: 178 EGLKYTEDGISAIIYVAEGDLRKAINLLQTASAM-ASTVDSKVVYRVAG 225
>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
Length = 323
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 152/229 (66%), Gaps = 13/229 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK ++++ +QEE+V L +E N PH+LF GPPGTGKTT ALA+AH L+G E
Sbjct: 5 WAEKYRPKTLREIVNQEEIVNRLMKFVEEKNMPHLLFAGPPGTGKTTAALALAHDLYGDE 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP-PYKIIILDEADSMTE 169
++ +LELNASD+RGI V+R+K+K FA R P P+KI+ILDEAD+MT
Sbjct: 65 -WRRYLLELNASDERGIAVIRSKVKEFA---------RSKLPGDIPFKIVILDEADNMTA 114
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y + TRF I NY S+II+P+ SRCA FRF PL E ++SR+ IC +
Sbjct: 115 DAQQALRRIMEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLKREDVTSRLRWICEQ 174
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E + D + L + +S GD+R+AI LQ A+ L +T ++ V G
Sbjct: 175 EKVKCDEDGLDVIYELSGGDMRKAINILQSASAL--GEVTVSNVYKVVG 221
>gi|167393611|ref|XP_001740649.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165895162|gb|EDR22913.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 329
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 162/228 (71%), Gaps = 7/228 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV QEEV+++L ++L++ P++LF+GPPG+GKTT+ LA+AH+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLDSG-LPNLLFFGPPGSGKTTSILAVAHELFQG- 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K RVLELNAS+ RGI +VRT +K +A V G P YK+IILDE+D++T D
Sbjct: 65 YFKERVLELNASNQRGIEMVRTTLKNYAMQDV---THYDGIP--DYKLIILDESDALTPD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME ++K TRF ICNYISRI+ P++SRC KFRF L +E++S+R+ IC +E
Sbjct: 120 AQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
G ++ EA+ +S +S+GDLR I LQ ++ S+T +D+ +V+G
Sbjct: 180 GFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAG 227
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 145/212 (68%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G +
Sbjct: 8 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 67 AWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y+ TRF + NY+SRII+P+ SRCA FRF P+ +E+M+ R+ +I +
Sbjct: 118 DAQQALRRIMEMYANTTRFILLANYVSRIIDPIISRCAVFRFPPMPKELMAKRLAYIAKQ 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ + + + + ISQGD+RRAI LQ AA
Sbjct: 178 EGITVTEDGIDAIYEISQGDMRRAINLLQMAA 209
>gi|340377781|ref|XP_003387407.1| PREDICTED: replication factor C subunit 5-like [Amphimedon
queenslandica]
Length = 332
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 148/217 (68%), Gaps = 8/217 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ +E++ + + L+ PH+LFYGPPGTGKT+T LA A +F P
Sbjct: 6 PWVEKYRPKNLDDLISHKEIINTIQHFLKEDRLPHLLFYGPPGTGKTSTILACAKTIFSP 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
KS VLELNASDDRGI+VVR I++FA+ S R G +K+IILDEAD+MT+
Sbjct: 66 AEIKSMVLELNASDDRGIDVVRGPIQSFASTR--SIFRSG------FKLIILDEADAMTK 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +ETY+ RF ICNY+S+II L SRC +FRF PLS E MS R+ HI E
Sbjct: 118 DAQNALRRVIETYTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLSMEQMSVRLQHIIRE 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
E +N+ + ++ ++QGD+RR++ LQ + + +
Sbjct: 178 ENINITDSGMDSVVKLAQGDMRRSLNILQSTSMAYDT 214
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 152/230 (66%), Gaps = 10/230 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP+++ D+ Q+ +V+ L + ++T + PH+LF GPPG GKTT AL + +LF
Sbjct: 12 EKPWVEKYRPQRLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALCLTRELF 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 72 G-EHWRHNFLELNASDERGINVIREKVKEFARTKPIGG--------ASFKIIFLDEADAL 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ ALRR ME +S RF CNY S+IIEP+ SRCA FRF+PL +E ++ R+ I
Sbjct: 123 TQDAQQALRRMMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDIAKRIRFIA 182
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
EGL L E L L I++GDLRRAI LQ AA L + IT +++ V+
Sbjct: 183 ENEGLELTEEGLQALLYIAEGDLRRAINVLQAAAAL-DTKITDENVFLVA 231
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 149/221 (67%), Gaps = 10/221 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L+ W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT ALA+ H
Sbjct: 3 LEEEILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVH 62
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
L+G Y+ LELNASD+RGI+V+R K+K FA G P+K+++LDEA
Sbjct: 63 DLYGDN-YRQYFLELNASDERGIDVIRNKVKEFARTVAGGN--------VPFKVVLLDEA 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT DAQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+
Sbjct: 114 DNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLA 173
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+I E + D +AL T+ I+QGD+R+AI LQ A+ ++G
Sbjct: 174 YIAKNEKVEYDQKALETIYDITQGDMRKAINILQ-ASSVYG 213
>gi|407043555|gb|EKE42013.1| replication factor C subunit 4, putative [Entamoeba nuttalli P19]
Length = 329
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 161/228 (70%), Gaps = 7/228 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV QEEV+++L ++L + P++LF+GPPG+GKTT+ LA+AH+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQG- 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K RVLELNAS+ RGI +VRT +K +A V G P YK+IILDE+D++T D
Sbjct: 65 YFKERVLELNASNQRGIEMVRTTLKNYAMQDV---THYDGIP--DYKLIILDESDALTPD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME ++K TRF ICNYISRI+ P++SRC KFRF L +E++S+R+ IC +E
Sbjct: 120 AQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
G ++ EA+ +S +S+GDLR I LQ ++ S+T +D+ +V+G
Sbjct: 180 GFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAG 227
>gi|67478786|ref|XP_654775.1| Replication factor C subunit 4 [Entamoeba histolytica HM-1:IMSS]
gi|56471850|gb|EAL49389.1| Replication factor C subunit 4, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449704169|gb|EMD44462.1| replication factor C subunit 4, putative [Entamoeba histolytica
KU27]
Length = 329
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 160/228 (70%), Gaps = 7/228 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV QEEV+++L ++L + P++LF+GPPG+GKTT+ LA+AH+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQG- 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K RVLELNAS+ RGI +VRT +K +A V P YK+IILDE+D++T D
Sbjct: 65 YFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGT-----PDYKLIILDESDALTPD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME ++K TRF ICNYISRI+ P++SRC KFRF L +E++S+R+ IC +E
Sbjct: 120 AQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
G ++ EA+ +S +S+GDLR I LQ ++ S+T +D+ +V+G
Sbjct: 180 GFSVTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAG 227
>gi|380015701|ref|XP_003691836.1| PREDICTED: replication factor C subunit 5-like [Apis florea]
Length = 330
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 157/238 (65%), Gaps = 9/238 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 6 PTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILAC 65
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ P + S VLE+NASDDRGIN+VR +I +FA + G+ R G +K+IILD
Sbjct: 66 ARKLYTPAQFNSMVLEMNASDDRGINIVRGQILSFA--STGTMYRSG------FKLIILD 117
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PLS + + R
Sbjct: 118 EADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPR 177
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ I EE LN+ + L ++S GD+R+ + LQ FG ++T +++ S G+P
Sbjct: 178 LDTIIKEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFG-AVTEENVYSCVGHP 234
>gi|340720472|ref|XP_003398661.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Bombus
terrestris]
gi|340720474|ref|XP_003398662.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Bombus
terrestris]
Length = 329
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 5 PTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ P + S VLE+NASDDRGI +VR +I +FA + G+ R G +K+IILD
Sbjct: 65 ARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFA--STGTMYRSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PLS + + R
Sbjct: 117 EADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPR 176
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ I EE LN+ + L ++S GD+R+ + LQ + F S++T +++ S G+P
Sbjct: 177 LDAIIKEENLNVSEDGKQALITLSGGDMRKVLNVLQSTSLAF-SAVTEENVYSCVGHP 233
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 5 PTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ P + S VLE+NASDDRGI +VR +I +FA + G+ R G +K+IILD
Sbjct: 65 ARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFA--STGTMYRSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PLS + + R
Sbjct: 117 EADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPR 176
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ I EE LN+ + L ++S GD+R+ + LQ + F S++T +++ S G+P
Sbjct: 177 LDTIIKEENLNVSEDGKQALITLSGGDMRKVLNVLQSTSLAF-SAVTEENVYSCVGHP 233
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 143/211 (67%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK ++ EE+ L ++ N PH+LFYGPPGTGKTTTAL +A +L+G E
Sbjct: 8 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG-E 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGINV+R ++K FA A G P+K+++LDEAD+MT D
Sbjct: 67 RWRENTLELNASDERGINVIRERVKEFARTAPAGG--------APFKLVVLDEADNMTSD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF + NY+SRII+P+ SRCA FRF P+ + +M+ R+ +I ++E
Sbjct: 119 AQQALRRIMEMYAATTRFVLLANYVSRIIDPILSRCAVFRFPPMPKPLMAQRLQYIASQE 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ L + + + ISQGD+RRAI LQ AA
Sbjct: 179 RIKLTEDGIDAIYEISQGDMRRAINLLQMAA 209
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/220 (51%), Positives = 150/220 (68%), Gaps = 12/220 (5%)
Query: 47 SSQP---WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
S QP W EKYRP+ + +V +Q+EVV L +E N PH+LF GPPGTGKTT A +A
Sbjct: 9 SEQPLLLWAEKYRPRTLDEVVNQKEVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLA 68
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
H L+G Y+ +LELNASD+RGI+V+R+K+K FA V +G+ P+KII+LDE
Sbjct: 69 HDLYGDN-YRQYMLELNASDERGIDVIRSKVKEFARTRV-AGE-------VPFKIILLDE 119
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD+MT DAQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PLS E + R+
Sbjct: 120 ADNMTADAQQALRRLMELYTATTRFILIANYPSKIIEPIQSRCAVFRFTPLSREDVVERL 179
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+I +E + + EAL T+ +S+GD+R+AI LQ A+ L
Sbjct: 180 KYIAEKENVKYNTEALETIHELSEGDMRKAINILQAASAL 219
>gi|406607522|emb|CCH40993.1| Replication factor C subunit 2 [Wickerhamomyces ciferrii]
Length = 316
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/174 (62%), Positives = 132/174 (75%), Gaps = 2/174 (1%)
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG--SGQRRG 149
TGKT+T LA+ +L+GPEL K+RVLELNASD+RGI++VR K+K FA + V S +
Sbjct: 14 STGKTSTILALTKELYGPELSKTRVLELNASDERGISIVREKVKNFARLTVSNPSSEDLE 73
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
YPCPPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNYI+RII+PLASRC+KF
Sbjct: 74 KYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKF 133
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
RFKPL R+ HI +E + L+ L + I+ GDLR+AIT+LQ AARL
Sbjct: 134 RFKPLDNNDALLRLQHIQQQENIRLEDGVLEEVLKIASGDLRKAITFLQSAARL 187
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 144/211 (68%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 7 WAEKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDS 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA V S P+K+I+LDEAD+MT D
Sbjct: 67 -YEQFFLELNASDERGIDVIRNKVKEFARTMVSS--------SVPFKVILLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+II+P+ SR A FRF PL +E + SR+ I EE
Sbjct: 118 AQQALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEE 177
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ D +AL T+ ++ GD+R+AI LQ A+
Sbjct: 178 KVEYDEKALETIYDVTMGDMRKAINTLQAAS 208
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 149/216 (68%), Gaps = 11/216 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S + WVEKYRP+ + ++ QEE+V+ L ++ N PH+LF GPPGTGKTT ALA+AH L
Sbjct: 2 SEELWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEAD 165
+G E ++ LELNASD+RGI+V+R++IK +A + +G P+K++ILDEAD
Sbjct: 62 YG-ESWRDNTLELNASDERGIDVIRSRIKDYARTLPIGD---------VPFKLVILDEAD 111
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQ ALRRTME +S+ TRF I NY S+IIEP+ SRCA FRF+PL + R+
Sbjct: 112 NMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRW 171
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
I +EG+ +D AL + SQGDLR+AI LQ A+
Sbjct: 172 IAQQEGITVDDGALEAIWEESQGDLRKAINTLQAAS 207
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 143/211 (67%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK ++ EE+ L ++ N PH+LFYGPPGTGKTTTAL +A +L+G E
Sbjct: 6 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGINV+R ++K FA A G P+K+++LDEAD+MT D
Sbjct: 65 RWRENTLELNASDERGINVIRERVKEFARTAPAGG--------APFKLVVLDEADNMTSD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF + NY+S IIEP+ SRCA FRF PL ++ + +R+ +I +E
Sbjct: 117 AQQALRRIMEMYAATTRFVLLANYVSGIIEPIQSRCAVFRFSPLPKDAVVARLRYIAEQE 176
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
GL + +AL + +QGD+RRAIT LQ A+
Sbjct: 177 GLKVTQDALEAIFDFTQGDMRRAITALQIAS 207
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 142/212 (66%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ HI
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ L +A+ + +S+GD+R+AI LQ AA
Sbjct: 176 EGIELRDDAIDLIYEVSEGDMRKAINLLQVAA 207
>gi|379005452|ref|YP_005261124.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375160905|gb|AFA40517.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 329
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 143/212 (67%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRVFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ HI
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRGLMAERLRHIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ L +A+ + +S+GD+R+AI LQ AA
Sbjct: 176 EGIELRDDAIDLIYEVSEGDMRKAINLLQVAA 207
>gi|395528003|ref|XP_003766124.1| PREDICTED: replication factor C subunit 4 [Sarcophilus harrisii]
Length = 302
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 147/216 (68%), Gaps = 5/216 (2%)
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQL--FGPELYKSRVLELNASDDRGINVVRTKIKTFA 138
+ P L +GPP + + A ++ +GPEL++ RVLELNASD+RGI V+R K+KTFA
Sbjct: 5 DTPISLAFGPPISDHWLPLPSQATKMHSYGPELFRQRVLELNASDERGIQVIREKVKTFA 64
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+ V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRI
Sbjct: 65 QLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRI 123
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
IEPL SRC+KFRFKPLS+++ R+L I +E + + E +S L +S+GDLR+AIT+LQ
Sbjct: 124 IEPLTSRCSKFRFKPLSDKIQYQRLLDISEKENVKISNEGISYLVKVSEGDLRKAITFLQ 183
Query: 259 GAARLF-GSSITSKDLISVSG-YPTGGSGGAFRGVQ 292
A RL G +T K + ++G PT G F Q
Sbjct: 184 SATRLTGGQEVTEKVITEIAGVVPTETINGIFSACQ 219
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 144/214 (67%), Gaps = 11/214 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G +
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-D 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 AWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y+ TRF + NY+S IIEP+ SRCA FRF PL +E + SR+ I +
Sbjct: 116 DAQQALRRIMEMYANTTRFILLANYVSGIIEPIQSRCAIFRFSPLPKEAVLSRLRFIAEQ 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
EG+ + EAL + +QGD+RRAIT LQ A+ +
Sbjct: 176 EGVKISQEALDAIFDFTQGDMRRAITALQIASSM 209
>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 153/249 (61%), Gaps = 12/249 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP ++ D+ E++ + ++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 5 QIGLPWVEKYRPNKLDDLISHTEIISTIKKFIDNEQLPHLLFYGPPGTGKTSTILAVAKE 64
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+G + K VLELNASD RGINVVR +I FA+ C +K+IILDE D
Sbjct: 65 LYGAKNLKKMVLELNASDARGINVVRNEILNFAS--------SRSLHCKGFKVIILDECD 116
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQ ALRR ME ++K RF ICNY+ ++I + SRC +FRF PLS E M R+ H
Sbjct: 117 AMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINH 176
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGGSG 285
+ EEG+++D + L +++GD+RR++ LQ A+ L + +T + V+G P
Sbjct: 177 VVEEEGIDIDQNGMDLLLKMAEGDMRRSLNILQ-ASHLAFNKVTDDIVYKVTGRPRRND- 234
Query: 286 GAFRGVQKW 294
R + +W
Sbjct: 235 --IRRMMEW 241
>gi|224072550|ref|XP_002188696.1| PREDICTED: replication factor C subunit 5 [Taeniopygia guttata]
Length = 329
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 161/240 (67%), Gaps = 9/240 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP ++ PWVEKYRP+ + ++ +++ + + PH+L YGPPGTGKT+T L
Sbjct: 1 MAPAGSANLPWVEKYRPQALSELVFHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A A QL+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++I
Sbjct: 61 ACARQLYREREFSSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M
Sbjct: 113 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMV 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
R+ H+ EEG+++ + + L ++S GD+RRA+ LQ + FG +T +++ + +G+P
Sbjct: 173 PRLQHVIQEEGVDVTEDGMKALVTLSSGDMRRALNILQSTSMAFG-KVTEENVYTCTGHP 231
>gi|339264352|ref|XP_003366698.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
gi|316956812|gb|EFV46929.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
Length = 235
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 109/176 (61%), Positives = 130/176 (73%), Gaps = 1/176 (0%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
LFYGPPGTGKT+ LA+ Q+FG E+Y+ RVLELNASD+RGI+V+R K+K F+ A S
Sbjct: 5 LFYGPPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQFA-ASE 63
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
GG CPP K++ILDEADSMT+ AQ ALRRTME SK TRF ICNYIS IIEP+ SR
Sbjct: 64 ITEGGKKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIEPITSR 123
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
CAKFRFKPL+ E+ R+ IC E +++D ALS+L S GDLRRAI LQ AA
Sbjct: 124 CAKFRFKPLTLEIQIERLRKICENESVSIDDAALSSLISFCDGDLRRAINTLQSAA 179
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRPK + ++ Q+E+V+ L +E + PH+LF GPPG GKTT AL +A LF
Sbjct: 2 DKPWVEKYRPKTLDEIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ LELNASD+RGI+V+RTK+K FA R P+KII LDE+D++
Sbjct: 62 G-ENWRENFLELNASDERGIDVIRTKVKDFA--------RTKPIGDVPFKIIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS V RF CNY S+II P+ SRCA FRF PL +E ++ ++ I
Sbjct: 113 TPDAQNALRRTMEKYSDVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDIAKKLKEIA 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+EGL L L + +S+GD+R+AI LQ AA L
Sbjct: 173 EKEGLKLTESGLEAIIYVSEGDMRKAINVLQTAAAL 208
>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 153/249 (61%), Gaps = 12/249 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP ++ D+ E++ + +E PH+LFYGPPGTGKT+T LA+A +
Sbjct: 5 QIGLPWVEKYRPNKLDDLISHTEIISTIKKFIENEQLPHLLFYGPPGTGKTSTILAVAKE 64
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+G + K VLELNASD RGI+VVR +I FA+ C +K+IILDE D
Sbjct: 65 LYGAKNLKKMVLELNASDARGIDVVRNEILNFAS--------SRSLHCKGFKVIILDECD 116
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQ ALRR ME ++K RF ICNY+ ++I + SRC +FRF PLS E M R+ H
Sbjct: 117 AMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINH 176
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGGSG 285
+ EEG+++D + L +++GD+RR++ LQ A+ L + +T + V+G P
Sbjct: 177 VVEEEGIDIDQNGMDLLLKMAEGDMRRSLNILQ-ASHLAFNKVTDDIVYKVTGRPRRND- 234
Query: 286 GAFRGVQKW 294
R + +W
Sbjct: 235 --IRRMMEW 241
>gi|308487512|ref|XP_003105951.1| CRE-RFC-4 protein [Caenorhabditis remanei]
gi|308254525|gb|EFO98477.1| CRE-RFC-4 protein [Caenorhabditis remanei]
Length = 362
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 151/249 (60%), Gaps = 15/249 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+AHQ+EVV +L L+ + PH+LFYGPPGTGKT+TALA QLF
Sbjct: 17 WTEKYRPKTLDDIAHQDEVVTMLKGALQGKDLPHLLFYGPPGTGKTSTALAFCRQLFPRN 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP-------CP----PYKII 159
+++ RVL+LNASD+RGI+VVR K+ F + + + C KII
Sbjct: 77 IFQDRVLDLNASDERGISVVRQKVSRFIVLLSNHSLQIQSFSKTTLSTNCKEDVLKLKII 136
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR+I P+ SRCAKFRFK L EV
Sbjct: 137 ILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPSEVQ 196
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279
R+ IC+ E + + L + S+GDLRRA+ LQ A + S D + + Y
Sbjct: 197 VQRLRTICDAEETPMSNDELMQVMEYSEGDLRRAVCTLQSLAPILRSG----DENARNCY 252
Query: 280 PTGGSGGAF 288
G S A
Sbjct: 253 LRGSSDSAL 261
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 157/230 (68%), Gaps = 12/230 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+++ D+ Q+E+VR L + ++T N PH+LF GPPG GKT +++I ++FG
Sbjct: 6 EIWIEKYRPERLDDIVGQDEIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKEIFG 65
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E +++ +ELNASD+RGI+++R K+K FA +A +G +K+I LDEAD++
Sbjct: 66 -ETWRNNFIELNASDERGIDIIRHKVKDFARMAPLGEAD---------FKVIFLDEADAL 115
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME YS TRF CNY S+IIEP+ SRCA +RFKPLS E ++ R+ I
Sbjct: 116 TNDAQSALRRTMERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLSPEAVTKRIKFIA 175
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+EEGL + LS + ++ GD+R+AI LQ AA L G + + + ++
Sbjct: 176 SEEGLRVSDGGLSAIEYVAGGDMRKAINALQAAA-LLGDEVDEETIYQIT 224
>gi|336476385|ref|YP_004615526.1| replication factor C [Methanosalsum zhilinae DSM 4017]
gi|335929766|gb|AEH60307.1| Replication factor C [Methanosalsum zhilinae DSM 4017]
Length = 317
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 157/232 (67%), Gaps = 12/232 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ DV Q+E + L + ++T N PH+LF GPPG GKT TA+AIAH+LFG +
Sbjct: 6 WIEKYRPMKLDDVVGQKEAIERLKSYVKTRNLPHLLFSGPPGVGKTATAVAIAHELFG-D 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ ELNASD+RGI+VVRTKIK FA + G +KII LDEAD++T D
Sbjct: 65 SWNENFTELNASDERGIDVVRTKIKNFAKTSPIGG--------ADFKIIFLDEADALTSD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF+PL++E + R+ ++ + E
Sbjct: 117 AQSALRRTMERYTGNCRFILSCNYSSKIIEPIQSRCAVYRFRPLADEPVKERIRYVADAE 176
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL--ISVSGYP 280
G+ L +A+ + ++QGD+R+A+ LQ AA +F +I + + I+ + +P
Sbjct: 177 GIKLADDAIDAIGYVAQGDMRKALNALQAAA-MFDETIQKEMIYKITATAHP 227
>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
Length = 328
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 156/238 (65%), Gaps = 9/238 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ PWVEKYRPK++ D+ EE+++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 5 PTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ + S VLE+NASDDRGIN+VR +I +FA + G+ + G +K+IILD
Sbjct: 65 ARKLYTSAQFNSMVLEMNASDDRGINIVRGQILSFA--STGTMYKSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PLS + + R
Sbjct: 117 EADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPR 176
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ I EE LN+ + L ++S GD+R+ + LQ FG ++T +++ S G+P
Sbjct: 177 LDTIIKEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFG-AVTEENVYSCVGHP 233
>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 156/232 (67%), Gaps = 10/232 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ Q+++V + +E PH+LFYGPPGTGKTTT +A+A L+G
Sbjct: 22 PWVEKYRPTSLDNIVSQDDIVATIKRFIEGNRLPHLLFYGPPGTGKTTTIMAVAKMLYGS 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGINVVR +IK FA G ++ + K++ILDEAD+MT
Sbjct: 82 S-HSSMVLELNASDDRGINVVREQIKVFA------GTKKLFHT--GVKLVILDEADNMTN 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E YS+ TRF ICNY+S II + SRC +FRF+PL+ +++ SR+L+I +
Sbjct: 133 AAQFALRRIIEKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNPQLIRSRLLYILRQ 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
E + D + ++ L ++S+GD+RR I LQ A FG +T++ + +G P+
Sbjct: 193 ENVEFDDDGVAALLALSRGDMRRVINVLQATAMAFG-KVTAEHVYRCAGMPS 243
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 147/212 (69%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q ++V L + ++ N PH+LF GPPGTGKTT+ALA+ H L+G E
Sbjct: 7 WAEKYRPRSLDDIVNQRDIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLYG-E 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASD+RGI+V+R K+K FA V GS P+K ++LDEAD+MT
Sbjct: 66 NYEQYLLELNASDERGIDVIRNKVKEFARTVTPGS---------VPFKTVLLDEADNMTA 116
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRRTME Y++ TRF CNY+S+II+P+ SR A FRF PL +E + SR+ I +
Sbjct: 117 DAQQALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIMKQ 176
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ D +AL + ++ GD+R+AI LQ A+
Sbjct: 177 EGVQYDPKALDVIYDVTNGDMRKAINVLQAAS 208
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 152/230 (66%), Gaps = 14/230 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ D+ +QEE+ + L + +E N PH+LF GPPGTGKTT ALA+AH+L+G +
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYG-D 62
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI+V+R K+K FA A +G P+KI+ LDEAD++T
Sbjct: 63 AWRENFLELNASDERGIDVIRHKVKEFARAKPIGD---------VPFKIVFLDEADALTR 113
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME YS+ TRF CNY S+IIEP+ SR F+FKPL +E + I
Sbjct: 114 DAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKG 173
Query: 230 EGLNL--DAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
EGL L + E ++ L I++GDLR+AI LQ AA + +IT L ++
Sbjct: 174 EGLILENEDEIINALYDIAEGDLRKAINILQAAA-MMSKTITVDRLYEIA 222
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 144/212 (67%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ + +A+ + +S+GD+R+AI LQ AA
Sbjct: 176 EGVEVKEDAIDLIYELSEGDMRKAINILQVAA 207
>gi|345484012|ref|XP_001599543.2| PREDICTED: replication factor C subunit 5-like [Nasonia
vitripennis]
Length = 285
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 150/231 (64%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE+++ + ++ PH+L YGPPGTGKT+T LA A +L+ P
Sbjct: 13 PWVEKYRPSKLDDLISHEEIIQTINKFIDENQLPHLLLYGPPGTGKTSTILACAKKLYTP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR +I +FA+ G+ R G YK+IILDEAD+MT
Sbjct: 73 QQFNSMVLELNASDDRGIGIVRGQILSFAST--GTMYRSG------YKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PL+ E + R+ H+ E
Sbjct: 125 DAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLAPEQILPRLEHVITE 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + + L ++S GD+R+ I LQ FG + +++ + G+P
Sbjct: 185 ENVTVTEDGKKALMTLSGGDMRKVINVLQSTWLAFG-CVNEENVYTCVGHP 234
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 143/212 (67%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ L +A++ + +S+GD+R+AI LQ AA
Sbjct: 176 EGVELREDAINMIYELSEGDMRKAINLLQVAA 207
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 142/211 (67%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + S P+K+++LDEAD+MT D
Sbjct: 70 -YVEYFLELNASDERGIDVIRNKVKEFARTVIPSN--------VPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+++I E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
D +AL T+ I+ GD+R++I LQ A+
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQAAS 211
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 142/212 (66%), Gaps = 12/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC-PPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A P P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTA----------PIKAPFKLVILDEADNMTS 114
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ +I
Sbjct: 115 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKYIAKR 174
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ + +AL + +S+GD+R+AI LQ AA
Sbjct: 175 EGIEVGEDALDLIYELSEGDMRKAINLLQVAA 206
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 144/216 (66%), Gaps = 13/216 (6%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S PWVEKYRP ++ ++ ++++ + ++ PHMLFYGPPGTGKT+T LA A +L
Sbjct: 34 DSLPWVEKYRPSRLDELISHKDIISTIVRFIDENKLPHMLFYGPPGTGKTSTILACARKL 93
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEA 164
+G + ++S +LELNASDDRGI+VVR +IK FA+ SG +K+IILDEA
Sbjct: 94 YGDK-FRSMILELNASDDRGIDVVREQIKNFASTRKLFSSG----------FKLIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT+ AQNALRR +E Y+K RF ICNY+ +II L SRC +FRF PL E +S R+
Sbjct: 143 DAMTQAAQNALRRVIEQYTKNVRFCLICNYVGKIIPALQSRCTRFRFAPLEEAQISDRIT 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
HI N+EG+N+ + +SQGD+RRA+ LQ
Sbjct: 203 HIINQEGINITQAGRQAVLKLSQGDMRRALNILQAV 238
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 141/211 (66%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + P+K+++LDEAD+MT D
Sbjct: 70 -YTEYFLELNASDERGIDVIRNKVKEFARTVIPGD--------IPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+++I E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
D +AL T+ I+ GD+R++I LQ A+
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQAAS 211
>gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi]
gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi]
Length = 332
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 150/232 (64%), Gaps = 11/232 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 12 PWVEKYRPNCLDDLISHEEIISTITRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSS 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 AHFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y++ RF ICNY+S+II L SRC +FRF PLS E M R+ I E
Sbjct: 124 DAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSAEQMLPRLNQIVQE 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS-GYP 280
E +N+ + + L ++S+GD+R+ + LQ + F I ++D + + GYP
Sbjct: 184 EHVNVTDDGKNALLTLSKGDMRKVLNVLQSTSMAF--DIVNEDNVYMCVGYP 233
>gi|253745639|gb|EET01440.1| Replication factor C, sub 2 [Giardia intestinalis ATCC 50581]
Length = 351
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 145/223 (65%), Gaps = 12/223 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW EK+RP + + HQ+ VR +E+ N PHML YGP GTGKTT A+ H+ F
Sbjct: 2 SAPWTEKHRPLALDRIVHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLVHAMMHEFF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEAD 165
GP +++RV E NAS DRGI +VR +IK+ A +AV + YPCP +++I+LDEAD
Sbjct: 62 GPRFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPEDVKALYPCPDFQVIVLDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T ++Q ALRR +E YS+ TRF +CNY S+II P+ SRCA+F F PL + ++ R+
Sbjct: 122 ALTRESQAALRRIIEDYSETTRFCILCNYPSQIIAPIVSRCARFAFSPLPQTLIIDRLTA 181
Query: 226 IC----------NEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
IC NE+ L ++ALS ++ +SQGD+R AIT LQ
Sbjct: 182 ICYAEMHQLRNANEQLSLLASDALSEVAILSQGDMRAAITLLQ 224
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 142/212 (66%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI V+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGIGVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ L +A+ + IS+GD+R+AI LQ AA
Sbjct: 176 EGVELKDDAIDLIYEISEGDMRKAINLLQVAA 207
>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287811|sp|Q46C63.1|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 334
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 144/213 (67%), Gaps = 8/213 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG
Sbjct: 9 EIWIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFG 68
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+L++ ELNASD+RGI+VVRTKIK FA A G +KII LDEAD++T
Sbjct: 69 EDLWRENFTELNASDERGIDVVRTKIKNFAKTAPMGG--------AEFKIIFLDEADALT 120
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY SRIIEP+ SRCA FRF+ LS+E + R+ +I
Sbjct: 121 SDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAK 180
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
++ L++ + L +SQGD+R+A+ LQ AA
Sbjct: 181 DQVLSITEDGYEALVYVSQGDMRKAVNSLQAAA 213
>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
Length = 332
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 146/231 (63%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 AHFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y++ RF ICNY+S+II L SRC +FRF PLS E M R+ + E
Sbjct: 124 DAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSPEQMMPRLNKVVEE 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +N+ + L ++++GD+R+ + LQ + F + ++ GYP
Sbjct: 184 ENVNITDDGKKALLTLAKGDMRKVLNVLQSTSMAF-DVVNEDNVYMCVGYP 233
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 142/211 (67%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +Q+E+V L ++ N PH+LF GPPGTGKTT ALA+ L+G
Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA + P+K+I+LDEAD+MT D
Sbjct: 67 -YRQYFLELNASDERGIDVIRNKVKEFARTVASNN--------VPFKVILLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R++ I E
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNE 177
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ D + + T+ I+QGD+R+AI +Q A+
Sbjct: 178 KVEFDPKGIETIFDITQGDMRKAINVIQAAS 208
>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
norvegicus]
gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
Length = 338
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 19 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + +RG +K++ILDEAD+MT+
Sbjct: 79 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKRG------FKLVILDEADAMTQ 130
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 131 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 190
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 191 ENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 240
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 144/226 (63%), Gaps = 10/226 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA Q++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIARQVYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E ++++ I EG+ + E + L + GD+RRAI LQ AA
Sbjct: 173 DEAVAAQTREIAAAEGIEVTDEGVDALVYAADGDMRRAINSLQAAA 218
>gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster]
gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia]
gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans]
gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster]
gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster]
gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster]
gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia]
gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans]
gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct]
gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct]
Length = 332
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 146/231 (63%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS++ M R+ I
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + + L ++++GD+R+ + LQ F ++ ++ GYP
Sbjct: 184 EAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYP 233
>gi|440801293|gb|ELR22313.1| Replication factor C protein [Acanthamoeba castellanii str. Neff]
Length = 296
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 144/230 (62%), Gaps = 47/230 (20%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK+V DVAHQEEVVR L +L+T N PH+L YGPPGTGKT+TALAI H+L+GP
Sbjct: 17 PWVEKYRPKKVDDVAHQEEVVRALKKSLDTGNLPHLLLYGPPGTGKTSTALAIGHELYGP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL+K+RV+ELNASD+RGINV+R+K+K+F+ VA + G
Sbjct: 77 ELFKTRVMELNASDERGINVIRSKVKSFSQVATAAASYNG-------------------- 116
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
+II+PLASRCAKFRF+PL + M +++ IC++
Sbjct: 117 --------------------------RQIIDPLASRCAKFRFRPLEGDTMGDKLVAICSQ 150
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSG 278
E L++ EAL T+ SIS GDLR+AIT LQ + L+ +T ++ V+G
Sbjct: 151 ENLHITEEALRTVVSISGGDLRKAITTLQSVSSLYDEKEVTEDAIVEVAG 200
>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
Length = 332
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 150/232 (64%), Gaps = 11/232 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 AHFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y++ RF ICNY+S+II L SRC +FRF PLS E M R+ + E
Sbjct: 124 DAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLNKVIQE 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS-GYP 280
E +N+ + + L ++++GD+R+ + LQ + F I ++D + + GYP
Sbjct: 184 ENVNVTDDGKNALLTLAKGDMRKVLNVLQSTSMAF--DIVNEDNVYMCVGYP 233
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/232 (46%), Positives = 157/232 (67%), Gaps = 12/232 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP +++DV Q + + L + ++T N PH+LF GPPG GKT TA++IA +LFG +
Sbjct: 6 WIEKYRPYRLEDVVGQSDAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARELFGDD 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ ELNASD+RGI+VVRTKIK FA + G +KII LDEAD++T D
Sbjct: 66 -WRENFTELNASDERGIDVVRTKIKNFAKTSPIGG--------ADFKIIFLDEADALTPD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF+PLS++ + R HI +E
Sbjct: 117 AQSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAIGKRCRHIAEKE 176
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL--ISVSGYP 280
GL++ + + + +++GD+R+AI +Q AA +F +SI + + I+ + +P
Sbjct: 177 GLDIADDGIEAIKYVAEGDMRKAINAVQ-AASMFDTSIHADSIYRITATAHP 227
>gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta]
gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta]
Length = 332
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 146/231 (63%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS++ M R+ I
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + + L ++++GD+R+ + LQ F ++ ++ GYP
Sbjct: 184 EAVQITDDGKRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYP 233
>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
Length = 365
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 152/247 (61%), Gaps = 16/247 (6%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + S+ PWVEKYRP ++ ++ E+VV+ LT +E PH+LFYGPPGTGKTTT LA
Sbjct: 5 PAVVSNLPWVEKYRPSKLDELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAA 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA--------AVAVGSGQRRGGYPCP 154
A +++ P S VLELNASD+RGI+VVR I FA A A S Q
Sbjct: 65 ARKMYSPARMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQSYATASSSDQ-------V 117
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
P+K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY++ II + SRC +FRF PL
Sbjct: 118 PFKMVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPL 177
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
++++ R+ I N E + + ++ L ++S GD+R I LQ A F +++ +
Sbjct: 178 DQKLIVPRLDFIVNSENIKMTSDGRQALLTVSNGDMRTVINTLQSTAMSF-DTVSESTVY 236
Query: 275 SVSGYPT 281
G PT
Sbjct: 237 QCIGQPT 243
>gi|383849950|ref|XP_003700596.1| PREDICTED: replication factor C subunit 5-like [Megachile
rotundata]
Length = 329
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 154/238 (64%), Gaps = 9/238 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P++ ++ PWVEKYRPK++ D+ E++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 5 PMISTNLPWVEKYRPKKLDDLISHEDIIKTINKFINEDQLPHLLFYGPPGTGKTSTILAC 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+ + S VLE+NASDDRGI +VR +I FA+ G+ + G +K+IILD
Sbjct: 65 ARKLYTAGQFNSMVLEMNASDDRGIGIVRGQILNFAST--GTLYKSG------FKLIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC KFRF PLS + + R
Sbjct: 117 EADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSSDQILPR 176
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ I EE LN+ + L ++S GD+R+ + LQ FG ++T + + + G+P
Sbjct: 177 LETIIKEENLNVSEDGKEALIALSGGDMRKVLNVLQSTWLAFG-TVTEETVYTCVGHP 233
>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
Length = 335
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 157/238 (65%), Gaps = 9/238 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
PV + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 9 PVQSRNLPWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILAC 68
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILD
Sbjct: 69 AKQLYKDREFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS ++M R
Sbjct: 121 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMMIPR 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ H+ EE +++ + + L ++S GD+RR++ LQ +G +T + + +G+P
Sbjct: 181 LEHVVKEERVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYG-KVTEDTVYTCTGHP 237
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 141/211 (66%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + P+K+++LDEAD+MT D
Sbjct: 70 -YVEYFLELNASDERGIDVIRNKVKEFARTVIPGN--------VPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+++I E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
D +AL T+ I+ GD+R++I LQ A+
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQAAS 211
>gi|440301872|gb|ELP94258.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 337
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 163/234 (69%), Gaps = 7/234 (2%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + W EKYRPK++ +V QEEV+++L ++L T+ P++LF+GPPG+GKTT+ LA++
Sbjct: 12 MSETNAWSEKYRPKKLDEVKGQEEVIKLLKSSL-TSGLPNLLFFGPPGSGKTTSILALSR 70
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+LFG +K RVLELNAS++RGI+++RT +K +A V + G P YK+IILDE+
Sbjct: 71 ELFG-NCFKDRVLELNASNERGIDMIRTTLKNYAMQDVS---HQDG--IPDYKLIILDES 124
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRR ME +++ TRF ICNYISRI+ P++SRC KFRF L +E + +
Sbjct: 125 DALTPDAQTALRRMMEDFTRNTRFCLICNYISRILPPISSRCIKFRFNALPQETVFEHLT 184
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
IC +E ++ EA+ + +S+GD+R AI LQ ++ S+T +D+ +V+G
Sbjct: 185 SICEKEKFDVTPEAIKAVGKLSEGDMRYAIGLLQKLSQGVRHSVTPQDISNVAG 238
>gi|341892966|gb|EGT48901.1| hypothetical protein CAEBREN_08790 [Caenorhabditis brenneri]
Length = 349
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 1/235 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + ++ E+VV+ LT +E PH+LFYGPPGTGKTTT LA A ++
Sbjct: 9 SNLPWVEKYRPSKFDELVAHEQVVKTLTRFIENRTLPHLLFYGPPGTGKTTTVLAAARKM 68
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+ P S VLELNASD+RGI+VVR I TFA P+K++ILDEAD+
Sbjct: 69 YSPAKMASMVLELNASDERGIDVVRNTIVTFAQTKGLQSFASASSEQLPFKLVILDEADA 128
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQNALRR +E Y+ RF ICNY++ II + SRC +FRF PL ++++ R+ HI
Sbjct: 129 MTRDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQQLIVPRLQHI 188
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
+ E + + + L ++S+GD+R I LQ A F +++ + G PT
Sbjct: 189 VDSESVKMTPDGQKALLTVSKGDMRTVINTLQSTAMSF-DTVSESTVYQCIGQPT 242
>gi|395514036|ref|XP_003761227.1| PREDICTED: replication factor C subunit 5 [Sarcophilus harrisii]
Length = 343
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 160/239 (66%), Gaps = 10/239 (4%)
Query: 43 PVLQS-SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
PV +S + PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA
Sbjct: 16 PVTKSRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 75
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
A QL+ + + S VLELNASDDRGI++VR I +FA+ + ++G +K++IL
Sbjct: 76 CAKQLYKDKEFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVIL 127
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M
Sbjct: 128 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 187
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
R+ H+ EE +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 188 RLEHVIEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 245
>gi|195473665|ref|XP_002089113.1| GE18941 [Drosophila yakuba]
gi|194175214|gb|EDW88825.1| GE18941 [Drosophila yakuba]
Length = 332
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 145/231 (62%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ +T + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS+ M R+ I
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQNQMMPRLEKIIEA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + + L ++++GD+R+ + LQ F ++ ++ GYP
Sbjct: 184 EAVQITDDGKRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYP 233
>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
aegypti]
gi|108874432|gb|EAT38657.1| AAEL009465-PA [Aedes aegypti]
Length = 330
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 150/236 (63%), Gaps = 11/236 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP + D+ EE++ + ++ PH+LFYGPPGTGKT+T LA A Q
Sbjct: 6 KSNLPWVEKYRPATLSDLISHEEIISTINKFIQEEQLPHLLFYGPPGTGKTSTILACARQ 65
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEA 164
L+ P+ + VLELNASDDRGIN+VR +I FA+ + SG YK+IILDEA
Sbjct: 66 LYKPQSFNQMVLELNASDDRGINIVRNQILNFASTRTIFSGG---------YKLIILDEA 116
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS + + R+
Sbjct: 117 DAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDQILPRLE 176
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
H+ + EG+ + + L +++ GD+R+ + LQ + +T ++ + G+P
Sbjct: 177 HVIDAEGIKVSDDGKKALMTLAGGDMRKVLNVLQSTWMAY-KDVTEDNVYTCVGHP 231
>gi|308159615|gb|EFO62141.1| Replication factor C, sub 2 [Giardia lamblia P15]
Length = 351
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/246 (43%), Positives = 153/246 (62%), Gaps = 15/246 (6%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW EK+RP + V HQ+ VR +E+ N PHML YGP GTGKTT A+ H+ F
Sbjct: 2 SAPWTEKHRPMSLDRVMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEAD 165
GP +++RV E NAS DRGI +VR +IK+ A +AV + YPCP +++IILDEAD
Sbjct: 62 GPRFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T ++Q ALRR +E +S+ TRF ICNY S+II P+ SRCA+F F L + ++ R+
Sbjct: 122 ALTRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPQSLIIDRLEA 181
Query: 226 IC----------NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL---FGSSITSKD 272
IC NE+ + +EAL ++++SQGD+R AIT LQ + G ++ K
Sbjct: 182 ICYAEMHQLRNANEKLSSSASEALGEVATLSQGDMRAAITLLQATVQFCQNMGEELSPKH 241
Query: 273 LISVSG 278
+ ++G
Sbjct: 242 VYLLAG 247
>gi|345790910|ref|XP_534696.3| PREDICTED: replication factor C subunit 5 [Canis lupus familiaris]
Length = 339
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E ++L + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 192 EKVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 241
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/228 (47%), Positives = 152/228 (66%), Gaps = 11/228 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +KD+ +Q+++ L ++ N PH+LF GPPGTGKTT A A+AH L+G E
Sbjct: 17 WTEKYRPRTLKDIINQQDITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHDLYG-E 75
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+ +R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 76 SYQQFMLELNASDERGIDTIREKVKEFA--------RSKTPPEIPFKIVLLDEADNMTSD 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS TRF NY S+II+P+ SRCA FRF L +E + R+ +I ++E
Sbjct: 128 AQQALRRLMELYSASTRFILAANYPSKIIDPIQSRCAFFRFTSLKKEDVIDRLKYIADKE 187
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
G++ + +AL + IS+GD+R+AI LQ +A L +TS+ + V G
Sbjct: 188 GVDYEEDALDIIFEISEGDMRKAINILQASAYL--GKVTSELVFKVVG 233
>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
Length = 339
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 192 ENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 241
>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
Length = 339
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 192 ENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 241
>gi|390938548|ref|YP_006402286.1| replication factor C [Desulfurococcus fermentans DSM 16532]
gi|390191655|gb|AFL66711.1| Replication factor C [Desulfurococcus fermentans DSM 16532]
Length = 326
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/214 (52%), Positives = 142/214 (66%), Gaps = 11/214 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + +V +Q+EVV L +E N PHMLF GPPGTGKTT A +AH L+G +
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASD+R I V+R K+K FA A VG P+KI++LDEAD+MT
Sbjct: 69 -YRKYMLELNASDERKIEVIRGKVKEFARARVVGD---------VPFKIVLLDEADNMTA 118
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME YS TRF NY S+IIEP+ SR A FRF PLS E + R+ +ICN
Sbjct: 119 DAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNA 178
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
E + +AL T+ +S+GD+RRAI LQ AA L
Sbjct: 179 EKIECAEKALETIYELSEGDMRRAINILQTAAAL 212
>gi|395834095|ref|XP_003790050.1| PREDICTED: replication factor C subunit 5 [Otolemur garnettii]
Length = 456
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 169/258 (65%), Gaps = 12/258 (4%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
F+ S+P++ +++ + A + PWVEKYRP+ + D+ ++++ + +
Sbjct: 113 FAMEASAPKQQQEQ---QPAGTKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRL 169
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PH+LFYGPPGTGKT+T LA A +L+ + + S VLELNASDDRGI++VR I +FA+
Sbjct: 170 PHLLFYGPPGTGKTSTILACAKRLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTR- 228
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+ ++G +K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L
Sbjct: 229 -TIFKKG------FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPAL 281
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
SRC +FRF PL+ E+M R+ H+ EE +++ + + L ++S GD+RRA+ LQ
Sbjct: 282 QSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNM 341
Query: 263 LFGSSITSKDLISVSGYP 280
FG +T + + + +G+P
Sbjct: 342 AFG-KVTEETVYTCTGHP 358
>gi|397524983|ref|XP_003832459.1| PREDICTED: replication factor C subunit 5 [Pan paniscus]
Length = 340
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|410976710|ref|XP_003994756.1| PREDICTED: replication factor C subunit 5 [Felis catus]
Length = 340
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
gi|403281561|ref|XP_003932252.1| PREDICTED: replication factor C subunit 5 [Saimiri boliviensis
boliviensis]
Length = 340
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|348584884|ref|XP_003478202.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Cavia
porcellus]
Length = 337
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
leucogenys]
gi|426374300|ref|XP_004054014.1| PREDICTED: replication factor C subunit 5 [Gorilla gorilla gorilla]
Length = 340
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|346472797|gb|AEO36243.1| hypothetical protein [Amblyomma maculatum]
Length = 327
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 153/236 (64%), Gaps = 13/236 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP+++ D+ E+++ + ++ PH+LFYGPPGTGKT+T LA A Q+
Sbjct: 8 SNLPWVEKYRPQKLDDLIAHEDIISTIGRFIKEDRLPHLLFYGPPGTGKTSTILACAQQI 67
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEA 164
+ P+ + S+VLELNASDDRGI +VR +I +FA+ +G +K+I+LDEA
Sbjct: 68 YSPKEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTG----------FKLIVLDEA 117
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT DAQNALRR +E +++ RF ICNY+S+II L SRC +FRF PLS MS R+
Sbjct: 118 DAMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSTAQMSPRID 177
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
H+ +E L + A+ L ++QGD+R+A+ LQ + F S + ++ G P
Sbjct: 178 HVITQERLTVTADGKKALMDLAQGDMRKALNILQSTSMAF-SEVNETNVYLCVGQP 232
>gi|198476564|ref|XP_002132399.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
gi|198137754|gb|EDY69801.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/232 (46%), Positives = 145/232 (62%), Gaps = 9/232 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP + D+ +E++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 11 KPWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLFYGPPGTGKTSTILACARQLYP 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P L+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 71 PALFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMT 122
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS + M R+ I
Sbjct: 123 NDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQ 182
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L ++S+GD+R+ + LQ A F + ++ +GYP
Sbjct: 183 SEDIKITENGKKALLTLSKGDMRKVLNVLQSTAMAF-DVVNEDNVYMCAGYP 233
>gi|348584882|ref|XP_003478201.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Cavia
porcellus]
Length = 340
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
Length = 330
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 141/211 (66%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q E++ L ++ N PH+LF GP GTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPSGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + S P+K+++LDEAD+MT D
Sbjct: 70 -YVEYFLELNASDERGIDVIRNKVKEFARTVIPSN--------VPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+++I E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
D +AL T+ I+ GD+R++I LQ A+
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQAAS 211
>gi|353241984|emb|CCA73760.1| probable RFC2-DNA replication factor C, 41 KD subunit
[Piriformospora indica DSM 11827]
Length = 358
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 146/236 (61%), Gaps = 27/236 (11%)
Query: 37 VKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKT 96
VK + P LQ PWVEKYRPK + +V+ Q+ V VL C H+ + P
Sbjct: 12 VKATIDPKLQ---PWVEKYRPKTMDEVSSQDHAVSVLKKHYSRQTC-HICYSMDP----- 62
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA---AVAVGSGQRRGG-YP 152
L++ RVLELNASD+RGI +VR KIK FA AV S G YP
Sbjct: 63 --------------LFRHRVLELNASDERGIAIVREKIKDFARQTPKAVTSAASDGKVYP 108
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
CPPYK+IILDEADSMT+DAQ ALRR METY+K+TRF ICNY++RIIEPL SRC+KFRFK
Sbjct: 109 CPPYKLIILDEADSMTQDAQGALRRIMETYAKITRFCLICNYVTRIIEPLTSRCSKFRFK 168
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268
PL S R+ I E + + + +S L + S GDLRRAITYLQ +RL +++
Sbjct: 169 PLDTSSTSIRLKEIAAAENVEVSDDVVSALVTTSGGDLRRAITYLQSCSRLAHATV 224
>gi|387849459|ref|NP_001248591.1| replication factor C subunit 5 [Macaca mulatta]
gi|402887809|ref|XP_003907273.1| PREDICTED: replication factor C subunit 5 [Papio anubis]
gi|355564724|gb|EHH21224.1| hypothetical protein EGK_04238 [Macaca mulatta]
gi|355759033|gb|EHH61566.1| hypothetical protein EGM_19495 [Macaca fascicularis]
gi|380786591|gb|AFE65171.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
gi|383414287|gb|AFH30357.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
Length = 340
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
tropicalis]
gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 154/231 (66%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 16 PWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKD 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 76 REFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS E+M R+ H+ E
Sbjct: 128 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPRLEHVVKE 187
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RR++ LQ +G +T + + +G+P
Sbjct: 188 ECVDISPDGMKALVTLSNGDMRRSLNILQSTNMAYG-KVTEDTVYTCTGHP 237
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 154/231 (66%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 41 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 100
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 101 KEFGSMVLELNASDDRGIEIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 152
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 153 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEE 212
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E ++L + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 213 EKVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 262
>gi|344295239|ref|XP_003419321.1| PREDICTED: replication factor C subunit 5 [Loxodonta africana]
Length = 343
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C subunit 5 [Equus caballus]
Length = 340
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 163/253 (64%), Gaps = 14/253 (5%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
S+PE+ + K+ + PWVEKYRP+ + D+ ++++ + + PH+L
Sbjct: 4 SAPEQQQSAATAKI-----RNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLL 58
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
YGPPGTGKT+T LA A QL+ + + S VLELNASDDRGI++VR I +FA+ + +
Sbjct: 59 YGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFK 116
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
+G +K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC
Sbjct: 117 KG------FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCT 170
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+FRF PL+ E+M R+ H+ EE + + + + L ++S GD+RRA+ LQ FG
Sbjct: 171 RFRFGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRRALNILQSTNMAFG-K 229
Query: 268 ITSKDLISVSGYP 280
+T + + + +G+P
Sbjct: 230 VTEETVYTCTGHP 242
>gi|410210156|gb|JAA02297.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410251550|gb|JAA13742.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410296138|gb|JAA26669.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410333015|gb|JAA35454.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
Length = 340
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 154/229 (67%), Gaps = 12/229 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP + DV QEE+V+ L + + + N PH+LF GPPG GKT A+++ +LFG E
Sbjct: 51 WIEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHLLFSGPPGVGKTAAAISMVRELFGEE 110
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ +ELNASD+RGI+VVR K+K FA +A +G+ + +K+I LDEAD++T
Sbjct: 111 -WRGNFIELNASDERGIDVVRHKVKDFARIAPLGNAE---------FKVIFLDEADALTN 160
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ+ALRRTME YS + RF CNY S+IIEP+ SRCA +RF+ LSEE +S R+ I
Sbjct: 161 DAQSALRRTMERYSSICRFVLSCNYSSKIIEPIQSRCAVYRFRSLSEEAVSERMKTIAEA 220
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
EG+ + E + + +++GD+R+AI LQ AA L S+T + + ++
Sbjct: 221 EGVKVTPEGMRAIVYVARGDMRKAINALQ-AASLMEESVTEETIYQITA 268
>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
Length = 340
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/212 (49%), Positives = 143/212 (67%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ + PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ + +M+ R+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAIFRFSPMPKNLMAERLRLIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ L +A+ + +S+GD+R+AI LQ A
Sbjct: 176 EGVELRDDAIDIIYELSEGDMRKAINLLQVVA 207
>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
gi|296478479|tpg|DAA20594.1| TPA: replication factor C 5 [Bos taurus]
Length = 316
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 192 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 241
>gi|440912210|gb|ELR61801.1| Replication factor C subunit 5 [Bos grunniens mutus]
Length = 340
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 192 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 241
>gi|426247312|ref|XP_004017430.1| PREDICTED: replication factor C subunit 5 isoform 1 [Ovis aries]
Length = 336
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 192 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 241
>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
Length = 335
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 160/239 (66%), Gaps = 9/239 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP+ + PWVEKYRP+++ D+ ++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 7 APLQTRNLPWVEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILA 66
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++IL
Sbjct: 67 CARQLYRDKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVIL 118
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS + M
Sbjct: 119 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMVP 178
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
R+ H+ +E +++ + + + ++S GD+RR++ LQ + +G +T + + +G+P
Sbjct: 179 RLEHVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHP 236
>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
Length = 337
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|71986063|ref|NP_498750.2| Protein F44B9.8 [Caenorhabditis elegans]
gi|55584161|sp|P34429.3|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|351021183|emb|CCD63451.1| Protein F44B9.8 [Caenorhabditis elegans]
Length = 368
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 150/246 (60%), Gaps = 8/246 (3%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
KM S+ PWVEKYRP ++ ++ E++V+ LT +E PH+LFYGPPGTGKTTT
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPP 155
LA A Q++ P S VLELNASD+RGI+VVR I FA A + G P
Sbjct: 80 LAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTV---P 136
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY++ I+ + SRC +FRF PL
Sbjct: 137 FKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLD 196
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
++++ R+ +I E L + + L +S+GD+R I LQ A F +++ +
Sbjct: 197 QKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSF-DTVSENTVYQ 255
Query: 276 VSGYPT 281
G PT
Sbjct: 256 CIGQPT 261
>gi|351694763|gb|EHA97681.1| Replication factor C subunit 5 [Heterocephalus glaber]
Length = 340
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|426247314|ref|XP_004017431.1| PREDICTED: replication factor C subunit 5 isoform 2 [Ovis aries]
Length = 316
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 192 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 241
>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
Length = 326
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 140/213 (65%), Gaps = 9/213 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + +V +Q+EVV L +E N PHMLF GPPGTGKTT A +AH L+G +
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+R I V+R K+K FA V P+KI++LDEAD+MT D
Sbjct: 69 -YRKYMLELNASDERKIEVIRGKVKEFARTRVVGD--------VPFKIVLLDEADNMTAD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS TRF NY S+IIEP+ SR A FRF PLS E + R+ +ICN E
Sbjct: 120 AQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+ +AL T+ +S+GD+RRAI LQ AA L
Sbjct: 180 KIECAEKALETIYELSEGDMRRAINILQTAAAL 212
>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
gi|728777|sp|P40937.1|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
Length = 340
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|371944797|gb|AEX62619.1| putative replication factor C small subunit [Moumouvirus Monve]
Length = 369
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 142/218 (65%), Gaps = 1/218 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRP++++D+A E ++++ N+ H LFYGPPGTGKT+ LA+ ++F
Sbjct: 7 SVPWIEKYRPRRLQDIAQSENLIKLFKNSTSKGEMTHFLFYGPPGTGKTSAILAMGREIF 66
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E + +RV+E NASDDRGIN VR KI A V S G P YKIIILDEADSM
Sbjct: 67 -KEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTTIPSYKIIILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T++AQ+ALR +E YS TRF FICNYI++I + + SRC+ FK L +E M +++ I
Sbjct: 126 TDEAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAIYFKKLDDECMVNKLNEIS 185
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+E + L + L T+ +S GD+R+AI LQ L+G
Sbjct: 186 IKESMKLSKDILETIIEVSNGDMRKAIMLLQNLKYLYG 223
>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
Length = 351
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 35 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 95 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 147 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 207 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 256
>gi|444723208|gb|ELW63869.1| Replication factor C subunit 5 [Tupaia chinensis]
Length = 341
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 22 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 82 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 134 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGE 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 194 ENVDITEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVHTCTGHP 243
>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
melanoleuca]
Length = 340
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E ++L + + L +++ GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDLSEDGMKALVTLASGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|194761822|ref|XP_001963122.1| GF15785 [Drosophila ananassae]
gi|190616819|gb|EDV32343.1| GF15785 [Drosophila ananassae]
Length = 332
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 146/231 (63%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE++ ++ + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 12 PWVEKYRPSGLDDLISHEEIISTISRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 72 QQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS + M R+ I +
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSPDQMMPRLEKIIDA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + + L ++++GD+R+ + LQ F + ++ + GYP
Sbjct: 184 EAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAF-DKVNEDNVYTCVGYP 233
>gi|294654838|ref|XP_456919.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
gi|199429188|emb|CAG84897.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
Length = 327
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 137/216 (63%), Gaps = 7/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE V L +E N PHM+ G PG GKTT+ +A++L GP
Sbjct: 12 PWVEKYRPHKLDDIVGNEETVERLKLLVEDGNMPHMIISGLPGIGKTTSIHCLAYELLGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELY+ LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 72 ELYQQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPAGRHKIIILDEADSMTP 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ LS+E + R+L +
Sbjct: 125 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYTKLSDEQVLERLLEVTKL 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + ++E L L ++GD+R+AI LQ FG
Sbjct: 185 EDVKYNSEGLQALIFTAEGDMRQAINNLQSTVAGFG 220
>gi|432116793|gb|ELK37418.1| Replication factor C subunit 5 [Myotis davidii]
Length = 341
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 156/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 22 PWVEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 82 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 134 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEE 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ + F S +T + + + +G+P
Sbjct: 194 EKVDVSEDGMKALITLSSGDMRRALNILQSTSMAF-SKVTEETVYTCTGHP 243
>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
gi|42559497|sp|Q8TSX5.1|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
C2A]
Length = 338
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 144/213 (67%), Gaps = 8/213 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP ++ VA Q+E + L + + T N PH+LF GPPG GKT +A++IA ++FG
Sbjct: 13 EIWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFG 72
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T
Sbjct: 73 EDLWRENFTELNASDERGIDIVRNKIKNFAKTAPIGG--------APFKIIFLDEADALT 124
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+IIEP+ SRCA +RF+ LS+E + R+ +I
Sbjct: 125 ADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAG 184
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
++GL++ L ++QGD+R+A+ LQ AA
Sbjct: 185 DQGLSITEGGYEALIYVAQGDMRKAVNSLQAAA 217
>gi|451927308|gb|AGF85186.1| replication factor C small subunit [Moumouvirus goulette]
Length = 369
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 142/218 (65%), Gaps = 1/218 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRP++++D+A E ++++ N++ H LFYGPPGTGKT+ LA+ ++F
Sbjct: 7 SIPWIEKYRPRRLQDIAQSENLIKLFKNSISKGEMTHFLFYGPPGTGKTSAILAMGREIF 66
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E + +RV+E NASDDRGIN VR KI A V S G P YKIIILDEADSM
Sbjct: 67 -KEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSISNPDGTIIPSYKIIILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T++AQ+ALR +E YS TRF FICNYI++I + + SRC+ FK L ++ M +++ I
Sbjct: 126 TDEAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAIYFKKLDDDCMVNKLNEIS 185
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+E + L E L T+ +S GD+R+AI LQ L+
Sbjct: 186 IKESMKLSKEILETIIEVSNGDMRKAIMLLQNLKYLYA 223
>gi|354466990|ref|XP_003495954.1| PREDICTED: replication factor C subunit 5 [Cricetulus griseus]
Length = 338
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 19 PWVEKYRPQTLADLISHQDILSSIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 79 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 130
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 131 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 190
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 191 ENVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 240
>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
Length = 327
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 155/240 (64%), Gaps = 9/240 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M ++S+ PWVEKYRP ++ D+ EE++ + ++ PH+LFYGPPGTGKT+T L
Sbjct: 1 MDANVKSNLPWVEKYRPAKLNDLISHEEIIGTINKFIKEEQLPHLLFYGPPGTGKTSTIL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A A QL+ P+ + S VLELNASDDRGIN+VR +I FA+ +GG YK+II
Sbjct: 61 ACARQLYKPQSFGSMVLELNASDDRGINIVRGQILDFASTRTIF---KGG-----YKLII 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT DAQNALRR +E Y++ RF ICNY+S+II + SRC +FRF PLS + +
Sbjct: 113 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLSPDQIL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
R+ H+ EG+++ + L +++ GD+R+ + LQ + +T ++ + G+P
Sbjct: 173 PRLEHVVEAEGIDVTDDGKKALMTLAGGDMRKVLNVLQSTWMAY-KKVTEVNVYNCVGHP 231
>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
troglodytes]
Length = 340
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 154/231 (66%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVGISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 142/211 (67%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+ +Q+++V L ++ N PH+LF GPPGTGKTT+ALA+ + L+G E
Sbjct: 7 WAEKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDLYG-E 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA P+K ++LDEAD+MT D
Sbjct: 66 NYRQYFLELNASDERGIDVIRNKVKDFARTVTPQD--------VPFKTVLLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+II+P+ SR A FRF PL +E + SR+ I E
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIAKNE 177
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ D +AL T+ I+ GD+R+AI LQ ++
Sbjct: 178 KVEYDPKALDTIYEITSGDMRKAINILQASS 208
>gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis]
Length = 340
Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 110/223 (49%), Positives = 144/223 (64%), Gaps = 10/223 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++KD+ E V L E N P+++ GPPGTGKTT+ L +AH+L GP
Sbjct: 23 PWVEKYRPTRIKDIVGNVEAVSRLQIIAEEGNMPNIILAGPPGTGKTTSILCLAHELLGP 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 83 N-FREAVLELNASDDRGIDVVRNKIKMFA-------QQKVTLPLGRHKIVILDEADSMTS 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ LS++ + R+LH+C E
Sbjct: 135 GAQQALRRTMEIYSSTTRFALACNQSSKIIEPIQSRCAIVRYSKLSDKELLQRLLHVCQE 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
EG+ + L + + GD+R+A+ +Q A FG + S+D
Sbjct: 195 EGVAHTPDGLEAVVFTADGDMRQALNNVQATANGFG--LVSQD 235
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 108/213 (50%), Positives = 140/213 (65%), Gaps = 9/213 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + +V +Q E+V L + N PHMLF GPPGTGKTT A +AH L+G
Sbjct: 8 WTEKYRPRTLDEVVNQSEIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAHDLYGDN 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI V+R+K+K FA V P+KII+LDEAD+MT D
Sbjct: 68 -YRQYILELNASDERGIEVIRSKVKEFARTRVVGN--------VPFKIILLDEADNMTAD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SR A FRF PL E + R+ +IC+ E
Sbjct: 119 AQQALRRLMELYTASTRFILIANYPSKIIEPIQSRTAVFRFTPLKREDVVERLKYICSNE 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+ +AL+T+ +S+GD+RRAI LQ +A L
Sbjct: 179 KVKCHEDALNTIFELSEGDMRRAINILQASAAL 211
>gi|441432472|ref|YP_007354514.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
gi|440383552|gb|AGC02078.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
Length = 369
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 142/218 (65%), Gaps = 1/218 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRP++++D+A E ++++ N+ H LFYGPPGTGKT+ LA+ ++F
Sbjct: 7 SVPWIEKYRPRRLQDIAQSENLIKLFKNSTSKGEMTHFLFYGPPGTGKTSAILAMGREIF 66
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E + +RV+E NASDDRGIN VR KI A V S G P YKIIILDEADSM
Sbjct: 67 -KEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTIIPSYKIIILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T++AQ+ALR +E YS TRF FICNYI++I + + SRC+ FK L +E M +++ I
Sbjct: 126 TDEAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAVYFKKLDDECMVNKLNEIS 185
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+E + L + L T+ +S GD+R+AI LQ L+G
Sbjct: 186 IKESMKLSKDILETIIEVSNGDMRKAIMLLQNLKYLYG 223
>gi|443714846|gb|ELU07083.1| hypothetical protein CAPTEDRAFT_164264 [Capitella teleta]
Length = 333
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 104/247 (42%), Positives = 155/247 (62%), Gaps = 16/247 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ D+ ++++ + ++ PH+LFYGPPGTGKTTT LA+A Q++ P
Sbjct: 13 PWVEKYRPQKLDDLISHKDIISTIGRFVKEERLPHLLFYGPPGTGKTTTILAVAKQIYAP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA--VAVGSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR +I +FA+ SG +K++ILDEAD+M
Sbjct: 73 KEFNSMVLELNASDDRGIGIVRDRILSFASTRTLFKSG----------FKLVILDEADAM 122
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL E M R+ ++
Sbjct: 123 TNDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLLPEQMKPRLQYVI 182
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGGSGGA 287
+E L + + + L +++ GD+RR++ LQ + F +T + + G+P
Sbjct: 183 EQEKLTVSEDGMDALVTLANGDMRRSLNILQSCSMAF-DEVTEHTVYTCVGHPLRSD--- 238
Query: 288 FRGVQKW 294
+ KW
Sbjct: 239 IEHIVKW 245
>gi|195146716|ref|XP_002014330.1| GL19009 [Drosophila persimilis]
gi|194106283|gb|EDW28326.1| GL19009 [Drosophila persimilis]
Length = 333
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 145/232 (62%), Gaps = 9/232 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP + D+ +E++ + + PH+L+YGPPGTGKT+T LA A QL+
Sbjct: 11 KPWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLYYGPPGTGKTSTILACARQLYP 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P L+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 71 PALFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CDTFKLIILDEADAMT 122
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PLS + M R+ I
Sbjct: 123 NDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQ 182
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L ++S+GD+R+ + LQ A F + ++ +GYP
Sbjct: 183 SEDIKITENGKKALLTLSKGDMRKVLNVLQSTAMAF-DVVNEDNVYMCAGYP 233
>gi|348533450|ref|XP_003454218.1| PREDICTED: replication factor C subunit 5-like [Oreochromis
niloticus]
Length = 335
Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 159/239 (66%), Gaps = 9/239 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP+ + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 7 APLQTRNLPWVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILA 66
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++IL
Sbjct: 67 CARQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVIL 118
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS + M
Sbjct: 119 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIP 178
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
R+ H+ +E +++ + + + ++S GD+RR++ LQ + +G +T + + +G+P
Sbjct: 179 RLEHVIQQENIDITPDGMKGIVTLSTGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHP 236
>gi|395744928|ref|XP_002823879.2| PREDICTED: replication factor C subunit 5 isoform 3 [Pongo abelii]
Length = 340
Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
Length = 331
Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 145/231 (62%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++D+ EE+V + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 11 PWVEKYRPNNLEDLISHEEIVSTINRFIGQKQLPHLLFYGPPGTGKTSTILACARQLYTP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+KS VLELNASDDRGI +VR +I FA+ R + C +K+IILDEAD+MT
Sbjct: 71 AQFKSMVLELNASDDRGIGIVRGQILNFAST-------RTIF-CGTFKLIILDEADAMTN 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y++ RF ICNY+S+II L SRC +FRF PLS E M R+ I
Sbjct: 123 DAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLDKIVEA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + + L ++++GD+R+ + LQ F + + ++ GYP
Sbjct: 183 EAVTITDDGKKALLTLAKGDMRKVLNVLQSTVMAF-NEVNENNVYMCVGYP 232
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 142/212 (66%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ + PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR FRF PL +E + +R+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRTVMFRFSPLPKEAVFTRLRYIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ + +AL T+ +QGD+RRAI LQ AA
Sbjct: 176 EGVKISDDALETIYEFTQGDMRRAINALQIAA 207
>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 149/234 (63%), Gaps = 11/234 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
QPW+EK+RP+ ++D+ EE ++ + ET N PH+L GPPGTGKTT+ L +AH +
Sbjct: 2 DQPWIEKHRPQCLEDIVGNEETIKRMKVITETGNLPHILLAGPPGTGKTTSMLCLAHAML 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + YK+ V+ELNASDDRGI+VVR KIK FA Q + P +K+++LDEADSM
Sbjct: 62 G-DAYKTAVIELNASDDRGIDVVREKIKLFA-------QSKVSLPEGSHKLVLLDEADSM 113
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRR ME YS TRF +CN S+IIEP+ SRCA RF L + + R+LHIC
Sbjct: 114 TPAAQQALRRIMELYSSTTRFALVCNISSKIIEPIQSRCAILRFNRLKDTEILDRLLHIC 173
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD-LISVSGYP 280
EE + + LS L + GDLR A+ LQ A +G ++ +++ +I V P
Sbjct: 174 EEEKITYTNDGLSALLFCADGDLRVAVNSLQ--ATFYGFNVVNEENVIKVCDQP 225
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 141/212 (66%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR RF PL +E + SR+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ + +AL T+ +QGD+R+AI LQ AA
Sbjct: 176 EGVKISDDALETIYEFTQGDMRKAINALQIAA 207
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 160/242 (66%), Gaps = 9/242 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M LQ S PWVEKYRP + DVA ++++ + PH+L YGPPGTGKT+T L
Sbjct: 1 MTQELQRSGPWVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTIL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKII 159
A+A +L+GP+ +++ +LELNASDDRGI+VVR +I+ FA+ ++ G++ K+I
Sbjct: 61 AVARKLYGPQ-FQNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKAN------VKLI 113
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD+MT+DAQ +LRR +E Y+K TRF ICNY+S+II L SRC +FRF PL + +
Sbjct: 114 ILDEADAMTKDAQFSLRRIIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHV 173
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279
R+ + ++E L++ + LS + +S GD+R+A+ LQ + ++ +T + S +G
Sbjct: 174 RERLEFVIDQERLDVTEDGLSAIVRLSNGDMRKALNILQ-STQMAEPHVTEAAVYSCTGN 232
Query: 280 PT 281
PT
Sbjct: 233 PT 234
>gi|405974676|gb|EKC39302.1| Replication factor C subunit 5 [Crassostrea gigas]
Length = 336
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 152/233 (65%), Gaps = 13/233 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPKQ+ ++ ++++ + ++ PH+LFYGPPGTGKT+T LA+A Q++ P
Sbjct: 17 PWVEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGTGKTSTILAVAKQIYSP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR +I +FA+ SG YKI+ILDEAD+M
Sbjct: 77 KEFNSMVLELNASDDRGIGIVRGQILSFASTRTIFKSG----------YKIVILDEADAM 126
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL + M R+ H+
Sbjct: 127 TRDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVPRLQHVI 186
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+E N+ + + L +++ GD+R+A+ LQ + + + ++ + G+P
Sbjct: 187 QQEQCNVTEDGMKALVTLANGDMRKALNILQ-STHMAHDVVNEDNVYTCVGHP 238
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/217 (49%), Positives = 141/217 (64%), Gaps = 13/217 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ Q+ V + L N PH+LF+GPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC--PPYKIIILDEADSMT 168
++ VLELNASD+RGI ++R K+K FA P P+++IILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGIAMIREKVKEFAKT----------IPTVKAPFRLIILDEADNMT 116
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ ALRR ME Y+ RF + NY S IIEP+ SRC+ FRF PL ++ + R+ I +
Sbjct: 117 PDAQQALRRIMEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLPKDAVLGRLRDIAS 176
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
EG+ + EAL + ISQGD+R+AI LQ AA L G
Sbjct: 177 REGVKVTDEALEAIWDISQGDMRKAINTLQAAASLGG 213
>gi|427798817|gb|JAA64860.1| Putative replication factor c activator 1 5, partial [Rhipicephalus
pulchellus]
Length = 314
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 153/236 (64%), Gaps = 13/236 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++ PWVEKYRP+++ D+ E+++ + ++ PH+LFYGPPGTGKT+T LA A Q+
Sbjct: 6 TNLPWVEKYRPQKLDDLIAHEDIISTIGRFIKEDKLPHLLFYGPPGTGKTSTILACAQQI 65
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEA 164
+ P+ + S+VLELNASDDRGI +VR +I +FA+ +G +K+I+LDEA
Sbjct: 66 YSPKEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTG----------FKLIVLDEA 115
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT DAQNALRR +E +++ RF ICNY+S+II L SRC +FRF PL+ MS R+
Sbjct: 116 DAMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLTAAQMSPRID 175
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
H+ +E L + A+ L ++QGD+R+A+ LQ + F + ++ G+P
Sbjct: 176 HVITQERLTVTADGKKALMDLAQGDMRKALNILQSTSMAF-DEVNETNVYLCVGHP 230
>gi|371943985|gb|AEX61813.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701544|gb|AFX92706.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 364
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 138/219 (63%), Gaps = 1/219 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PW+EKYRP+++KD + ++ + N+ H LFYGPPGTGKT+ LA+ ++
Sbjct: 7 NSVPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREI 66
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
F E + +RV+E NASDDRGIN VR KI A V + G P YKIIILDEADS
Sbjct: 67 F-KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADS 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT++AQ+ALR +E YS TRF FICNYIS+I + + SRC FK L +E M ++ I
Sbjct: 126 MTDEAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMIDKLKEI 185
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+E + L E LST+ +S GD+R+AI LQ L+
Sbjct: 186 STKESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYLYS 224
>gi|448825607|ref|YP_007418538.1| putative replication factor C small subunit [Megavirus lba]
gi|444236792|gb|AGD92562.1| putative replication factor C small subunit [Megavirus lba]
Length = 364
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 138/219 (63%), Gaps = 1/219 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PW+EKYRP+++KD + ++ + N+ H LFYGPPGTGKT+ LA+ ++
Sbjct: 7 NSVPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREI 66
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
F E + +RV+E NASDDRGIN VR KI A V + G P YKIIILDEADS
Sbjct: 67 F-KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADS 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT++AQ+ALR +E YS TRF FICNYIS+I + + SRC FK L +E M ++ I
Sbjct: 126 MTDEAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMIDKLKEI 185
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+E + L E LST+ +S GD+R+AI LQ L+
Sbjct: 186 STKESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYLYS 224
>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
gi|42559488|sp|Q8PVY4.1|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 338
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 142/211 (67%), Gaps = 8/211 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T D
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPMGG--------APFKIIFLDEADALTSD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY S+IIEP+ SRCA +RF+ LS++ + R+ +I E+
Sbjct: 127 AQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQ 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
L++ L ++QGD+R+A+ LQ AA
Sbjct: 187 DLSITDGGYEALIYVAQGDMRKAVNSLQAAA 217
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/228 (47%), Positives = 152/228 (66%), Gaps = 11/228 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT+ALA+ H L+G E
Sbjct: 6 WAEKYRPRTLDDIVNQKDIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+ GINV+RTK+K FA V G P+K ++LDEAD+MT D
Sbjct: 65 NYDQFFLELNASDENGINVIRTKVKDFAR-TVTPGN-------VPFKTVLLDEADNMTSD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+II+P+ SR A FRF PL +E + R+ +I EE
Sbjct: 117 AQQALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVILRLENILKEE 176
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+ D ++L + ++ GD+R+AI LQ AA +G +T+ ++ V G
Sbjct: 177 KVQYDVKSLEVVYDVTGGDMRKAINVLQAAAA-YG-KVTTDSVLKVLG 222
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 144/220 (65%), Gaps = 9/220 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +K++ +Q+E+V L+ + N PH+LF GPPGTGKTT A A+AH L+G
Sbjct: 10 WTEKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHALAHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y +LELNASD+RGI+ +R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 70 -YTQYMLELNASDERGIDTIREKVKEFA--------RSKTPPDIPFKIVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS TRF N+ S+II+P+ SRCA FRF PL ++ + R+ +I +E
Sbjct: 121 AQQALRRLMELYSANTRFILAANFPSKIIDPIQSRCAFFRFTPLGKDDVVGRLRYIAEKE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
+ D +AL + IS+GD+R+AI LQ AA L + S
Sbjct: 181 NVKYDEDALEAIYDISEGDMRKAINILQTAASLGKVDVDS 220
>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
Length = 353
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP ++ ++ E+VV+ LT +E PH+LFYGPPGTGKTTT LA A ++
Sbjct: 9 SNLPWVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKM 68
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIILD 162
+ P S VLELNASD+RGI+VVR I FA A S + P+K++ILD
Sbjct: 69 YHPSKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDSV---PFKLVILD 125
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQNALRR +E Y+ RF ICNY++ II + SRC +FRF PL + ++ R
Sbjct: 126 EADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQSLIVPR 185
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
+ I EGL + + L +S+GD+R I LQ A F
Sbjct: 186 LDFIVKSEGLQMTPDGREALLRVSKGDMRTVINTLQSTAMSF 227
>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
Length = 334
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 15 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKD 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 75 KEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 126
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS+ M R+ H+ +
Sbjct: 127 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQ 186
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + + ++S GD+RR++ LQ +G +T + + + +G+P
Sbjct: 187 ESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYG-KVTEETVYTCTGHP 236
>gi|442754535|gb|JAA69427.1| Putative replication factor c subunit rfc5 [Ixodes ricinus]
Length = 328
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 151/235 (64%), Gaps = 9/235 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+++ PWVEKYRP ++ D+ E+++ + + PH+LFYGPPGTGKT+T LA A Q
Sbjct: 8 RTNLPWVEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLLFYGPPGTGKTSTILACARQ 67
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP+ + S VLELNASDDRGI +VR +I FA+ S + G +K+IILDEAD
Sbjct: 68 IYGPKEFGSMVLELNASDDRGIGIVRGEILNFASTK--SIFKSG------FKLIILDEAD 119
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQNALRR +E +++ RF ICNY+S+II L SRC +FRF PLS MS R+ +
Sbjct: 120 AMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEY 179
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ +E L + + L ++QGD+R+A+ LQ + F +T ++ G P
Sbjct: 180 VIEQERLTVTDDGKKALMDLAQGDMRKALNILQSTSMAF-EEVTENNVYQCVGLP 233
>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
Length = 334
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 15 PWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKD 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 75 KEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 126
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS+ M R+ H+ +
Sbjct: 127 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQ 186
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + + ++S GD+RR++ LQ +G +T + + + +G+P
Sbjct: 187 ESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYG-KVTEETVYTCTGHP 236
>gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
Length = 348
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 154/263 (58%), Gaps = 15/263 (5%)
Query: 32 KSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
K D+ K + S PWVEKYRPK + D+ ++++ +NTL PH+LFYGPP
Sbjct: 10 KEIDQFKSDLERRQFESLPWVEKYRPKSINDLIAHDDIIATKSNTL-----PHLLFYGPP 64
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
GTGKT+T AIA +L+G E Y VLELNASDDRGI+VVR +IKTFA+
Sbjct: 65 GTGKTSTIQAIARKLYG-ENYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNS----- 118
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
PYK+IILDEADSMT AQ ALRR +E Y+K TRF +CNY+ +II L SRC +FRF
Sbjct: 119 -TVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVVKIIPALQSRCTRFRF 177
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK 271
KPL + R+ I E + +D E + + + GD+R+++ LQ + I +
Sbjct: 178 KPLPDSATEERLKEILKIENVQIDEEGMKAVLFLGDGDMRKSLNILQSVSMSTNGLIGEE 237
Query: 272 DLISVSGYPTGGSGGAFRGVQKW 294
+ +G P S F V +W
Sbjct: 238 QIYKCTGNP---SPTDFHMVLEW 257
>gi|156084582|ref|XP_001609774.1| replication factor C3 protein [Babesia bovis T2Bo]
gi|154797026|gb|EDO06206.1| replication factor C3 protein, putative [Babesia bovis]
Length = 348
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 148/242 (61%), Gaps = 16/242 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ D+ ++++ L N E PH+LF+GPPGTGKT+T +A++ L+G
Sbjct: 8 PWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYGS 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-------VGSGQRRGGYPCPPYKIIILD 162
+ S V+ELNASD+RGI VR +IKTFA + VGS P K+IILD
Sbjct: 68 HRH-SYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSG----PRTNLKLIILD 122
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD MT AQN+LRR ME YS RF ICN+++RII P+ SRC FRF PL +V+ R
Sbjct: 123 EADQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRR 182
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----ITSKDLISVSG 278
I EGL + AL TL+ I QGD+RR + LQ A G++ ITS +IS +G
Sbjct: 183 TADIAKAEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVISTAG 242
Query: 279 YP 280
P
Sbjct: 243 LP 244
>gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 347
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/233 (46%), Positives = 152/233 (65%), Gaps = 10/233 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + + E++ ++ + + PH+LFYGPPGTGKT+T AIA +L+G
Sbjct: 21 PWVEKYRPKDLSGLIAHEDITDTVSKLIAKNSLPHLLFYGPPGTGKTSTIQAIARKLYG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y VLELNASDDRGI+VVR +IKTFA+ S YP YK+IILDEADSMT
Sbjct: 80 ESYSRMVLELNASDDRGIDVVREQIKTFAS----SMFMFSNYP---YKLIILDEADSMTN 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y++ TRF ICNY+S+I+ L SRC +FRF PL ++ R+ I
Sbjct: 133 PAQTALRRVIEKYTRTTRFCMICNYVSKILPALQSRCTRFRFSPLPRSAITKRMKEIIEC 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDLISVSGYP 280
E L ++ +AL+++ ++S+GD+R+ + LQ A+ G++I + +G P
Sbjct: 193 ESLKVNDDALNSIITLSEGDMRKCLNILQSASMSIDVGTTIDKDTIYRCTGQP 245
>gi|431914245|gb|ELK15503.1| Replication factor C subunit 5 [Pteropus alecto]
Length = 345
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 159/235 (67%), Gaps = 13/235 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 22 PWVEKYRPQALNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 82 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 134 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 193
Query: 230 EGLNLDAE---ALSTLS-SISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + AL TLS ++S GD+RRA+ LQ + FG +T + + + +G+P
Sbjct: 194 EKVDISEDGMKALVTLSKTLSSGDMRRALNILQSTSMAFG-KVTEETVYTCTGHP 247
>gi|159115639|ref|XP_001708042.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803]
gi|157436151|gb|EDO80368.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803]
Length = 351
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 144/228 (63%), Gaps = 12/228 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW EK+RP + + HQ+ VR +E+ N PHML YGP GTGKTT A+ H+ F
Sbjct: 2 SAPWTEKHRPLLLDRIMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFF 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA--AVAVGSGQRRGGYPCPPYKIIILDEAD 165
GP +++RV E NAS DRGI +VR +IK+ A +AV + YPCP +++IILDEAD
Sbjct: 62 GPRFWRARVSEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T ++Q ALRR +E +S+ TRF ICNY S+II P+ SRCA+F F L ++ R+
Sbjct: 122 ALTRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPRPLIIDRLES 181
Query: 226 IC----------NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
IC NE+ + +EAL ++++SQGD+R AIT LQ +
Sbjct: 182 ICYAEMHQLRNANEKLSSSASEALGEVATLSQGDMRAAITLLQATVQF 229
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/214 (48%), Positives = 142/214 (66%), Gaps = 11/214 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E LNL+ + + +S+GD+R+AI LQ AA
Sbjct: 173 EKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
Length = 335
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 154/231 (66%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + ++ ++++ + + PH+LFYGPPGTGKT+T LA A QL+
Sbjct: 16 PWVEKYRPQTLDELISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKD 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGI++VR + +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 76 REFNSMVLELNASDDRGIDIVRGPVLSFASTR--TIFKKG------FKLVILDEADAMTQ 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS E+M R+ H+ E
Sbjct: 128 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIPRLEHVVKE 187
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RR++ LQ + S +T + + +G+P
Sbjct: 188 EHVDISPDGMKALVTLSNGDMRRSLNILQSTNMAY-SKVTEDTVYTCTGHP 237
>gi|440297885|gb|ELP90526.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 328
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 152/237 (64%), Gaps = 10/237 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
++ S PWVEKYRP + V E ++ L + PH+LFYGPPGTGKTTTALAI
Sbjct: 3 VEPSLPWVEKYRPTTISGVQGHEYILESLQQFISANQLPHLLFYGPPGTGKTTTALAIVK 62
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
Q+ GP+ Y + VLELNASD+RGINVVR +IK+FA+ R C K I+LDE+
Sbjct: 63 QICGPK-YTALVLELNASDERGINVVREQIKSFAST------RTLYTNCT--KFIVLDES 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D +T+DAQNALRRT+E YS RF FICN ++ I + SRCAKFRF PLS E + +
Sbjct: 114 DKLTKDAQNALRRTLEQYSGNCRFVFICNEVNLITPAIQSRCAKFRFGPLSPEALKKIMK 173
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
HI +EE + +D +A +L IS+GD R I LQ A + + I+++ L ++ G PT
Sbjct: 174 HITDEEKMVVDEDAQQSLIDISKGDARTIINTLQ-ALSMTCNQISNETLFAMVGLPT 229
>gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 150/239 (62%), Gaps = 8/239 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A+ L
Sbjct: 16 STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP----YKIIILD 162
FG + ++ VLE+NASDDRGI+VVR +++ FA+ S P P +K++ILD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFAST---SSFYFASAPAAPTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD M+ DAQ ALRR +E Y+K RF +CN+I++II L SRC +FRF P+ + M SR
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSR 192
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
+ + EEG+ E L +S GDLRR + LQ +A G IT + + V+G PT
Sbjct: 193 LKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMSAG-EITEESVYRVTGNPT 250
>gi|448515699|ref|XP_003867395.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380351734|emb|CCG21957.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 333
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 152/229 (66%), Gaps = 5/229 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M + + PWVEKYRP+ + +V Q+++V + +ET PH+LFYGPPGTGKT+T +
Sbjct: 1 MTDKYRDNLPWVEKYRPENLTEVYGQQDIVNTIRRFVETGKLPHLLFYGPPGTGKTSTII 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A+A +++GP YK+ VLELNASDDRGI+VVR +IK+FA+ + Q P +K+II
Sbjct: 61 ALAREIYGPH-YKNMVLELNASDDRGIDVVRNQIKSFAS----TRQIFTSSSSPQFKLII 115
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT AQN+LRR +E Y+K RF + NY ++ L SRC +FRF P+ EE +
Sbjct: 116 LDEADAMTSVAQNSLRRIIERYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIR 175
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
SR+ ++ +E +N+ +AL+ L +SQGD+RR++ LQ G T
Sbjct: 176 SRIDNVIIKEKVNITPDALNALLRLSQGDMRRSLNVLQACKAACGDDET 224
>gi|407847432|gb|EKG03143.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 150/239 (62%), Gaps = 8/239 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A+ L
Sbjct: 16 STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP----YKIIILD 162
FG + ++ VLE+NASDDRGI+VVR +++ FA+ S P P +K++ILD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFAST---SSFYFASTPAAPTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD M+ DAQ ALRR +E Y+K RF +CN+I++II L SRC +FRF P+ + M SR
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSR 192
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
+ + EEG+ E L +S GDLRR + LQ +A G IT + + V+G PT
Sbjct: 193 LKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMSAG-EITEESVYRVTGNPT 250
>gi|71745690|ref|XP_827475.1| replication factor C subunit 3 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831640|gb|EAN77145.1| replication factor C, subunit 3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331678|emb|CBH14672.1| replication factor C, subunit 3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 357
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 149/240 (62%), Gaps = 2/240 (0%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P S+ PWVEKYRP + DV EE++ + + + PH+LFYGPPGTGKTTT A
Sbjct: 12 PAKNSTLPWVEKYRPTTLDDVVAHEEILDTTRRLMNSGSMPHLLFYGPPGTGKTTTIKAC 71
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR-GGYPCPPYKIIIL 161
AH LFG E ++ VLE+NASDDRGI+VVR +++ FA+ + Q G +K++IL
Sbjct: 72 AHHLFGKERLRANVLEMNASDDRGIDVVRQQVREFASTSSIFFQNNPGNQTVTNFKLVIL 131
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD M+ DAQ ALRR +E ++K RF +CN+I++II L SRC +FRF P+ + M
Sbjct: 132 DEADQMSSDAQAALRRIIEKFTKNVRFCILCNHINKIIPALQSRCTRFRFSPVKKSAMLP 191
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
R+ I EEG+ E L + +S GD+RR + +Q A+ + IT + + +G PT
Sbjct: 192 RLKLIAREEGVPFTDEGLISAFRLSDGDMRRCLNTMQ-ASSMSAGEITEESVYRTTGNPT 250
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 146/229 (63%), Gaps = 12/229 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR RF PL +E + +R+ +I +
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
EG+ + +AL + +QGD+RRAI LQ AA G IT + + G
Sbjct: 176 EGVKITDDALEAIYEFTQGDMRRAINALQIAATT-GKEITEETVAKALG 223
>gi|354547265|emb|CCE43999.1| hypothetical protein CPAR2_502240 [Candida parapsilosis]
Length = 337
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 155/236 (65%), Gaps = 5/236 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ + + PWVEKYRP+ + +V Q+++V + +ET PH+LFYGPPGTGKT+T +
Sbjct: 1 MSDKYRDNLPWVEKYRPENLTEVYGQQDIVSTIRRFVETGKLPHLLFYGPPGTGKTSTIV 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A+A +++GP YK+ VLELNASDDRGI+VVR +IK+FA+ + Q P +K+II
Sbjct: 61 ALAREIYGPN-YKNMVLELNASDDRGIDVVRNQIKSFAS----TRQIFTSSSSPQFKLII 115
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT AQN+LRR +E Y+K RF + NY ++ L SRC +FRF P+ E +
Sbjct: 116 LDEADAMTSVAQNSLRRIIEKYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEAAIR 175
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISV 276
SR+ ++ +E +N+ +AL+ L +SQGD+RR++ LQ G + + I V
Sbjct: 176 SRIDNVIIKEKVNITPDALNALLQLSQGDMRRSLNVLQACKAACGDDDDNSETIDV 231
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 146/211 (69%), Gaps = 9/211 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A ++FGP
Sbjct: 23 PWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGP 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ +++ VLELNASDDRGI+VVR +IK+FA+ +V S +GG+ K+I+LDEAD+MT
Sbjct: 83 Q-FRNSVLELNASDDRGIDVVREQIKSFASTKSVFSS--KGGF-----KLIVLDEADAMT 134
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+ AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + + R+ H+
Sbjct: 135 QAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIE 194
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EG N+ + L +S+GD+RRA+ LQ
Sbjct: 195 SEGCNITQDGKEALLKLSRGDMRRALNVLQA 225
>gi|432872493|ref|XP_004072116.1| PREDICTED: replication factor C subunit 5-like [Oryzias latipes]
Length = 340
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 156/238 (65%), Gaps = 9/238 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + PWVEKYRP+++ D+ +++ + + PH+L YGPPGTGKT+T LA
Sbjct: 8 PLQSRNLPWVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGKTSTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 ARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS + M R
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPR 179
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ H+ EE +++ + + + ++S GD+RR++ LQ + +G +T + + +G P
Sbjct: 180 LRHVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYG-KVTEDSVYTCTGQP 236
>gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74855117|sp|Q54ST4.1|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 148/234 (63%), Gaps = 8/234 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK + D+ E++ + +T ++ PH+LFYGPPGTGKT+T AIA +L+
Sbjct: 23 SLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLY 82
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G Y VLELNASDDRGI+VVR +IKTFA+ PYK+IILDEADSM
Sbjct: 83 GDN-YSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTT------VPYKLIILDEADSM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRR +E Y+K TRF +CNY+ +II L SRC +FRF PL R+ I
Sbjct: 136 TNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEII 195
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR-LFGSSITSKDLISVSGYP 280
+E + +D++A++ + + GD+R+ + LQ + ++IT + + +GYP
Sbjct: 196 EKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYP 249
>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
Length = 340
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 154/231 (66%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 140/211 (66%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV QE++V L + + + PH+LF GP G GKTT A AIA +++G +
Sbjct: 14 WIEKYRPQTLDDVYGQEDIVDRLESYIAQHDLPHLLFAGPAGIGKTTCATAIAREVYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 74 -WRGNFLELNASDERGIDVVRDRIKNFA---------RASFGGHDYRIIFLDEADSLTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS++ ++ ++ I + E
Sbjct: 124 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFAPLSDDAVAGQIRKIADRE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
G+ + E L L + GD+RRAI LQ AA
Sbjct: 184 GIEMTDEGLDALVYAADGDMRRAINSLQAAA 214
>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
Length = 347
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 111/225 (49%), Positives = 147/225 (65%), Gaps = 11/225 (4%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
K++ + ++ W EKYRP+ + +V +Q+E+V L +E + PHMLF GPPGTGKTT A
Sbjct: 19 KVSGLSEAELLWAEKYRPRTLDEVVNQKEIVVRLKKFVEEKSIPHMLFAGPPGTGKTTMA 78
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKI 158
+AH L+G + YK +LELNASD+R I V+R K+K FA + VG P+KI
Sbjct: 79 HCLAHDLYGDD-YKKYMLELNASDERKIEVIRGKVKEFARSRVVGE---------VPFKI 128
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
++LDEAD+MT DAQ ALRR ME YS TRF NY S+IIEP+ SR A FRF PL +E
Sbjct: 129 VLLDEADNMTADAQQALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLRKED 188
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+ R+ +ICN E + D AL T+ +S+GD+RRAI LQ A L
Sbjct: 189 VVERLRYICNAEKVKCDERALETIYELSEGDMRRAINILQTTAAL 233
>gi|320163905|gb|EFW40804.1| DNA replication factor C subunit Rfc4 [Capsaspora owczarzaki ATCC
30864]
Length = 366
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
QS PWVEKYRP +KDV E+ V L E N P+++ G PGTGKTT+ L +AHQ
Sbjct: 48 QSEMPWVEKYRPILLKDVVGNEDTVARLQIIAEEGNMPNIIIAGQPGTGKTTSILCLAHQ 107
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L GP YK+ VLELNASDDRGI+VVR IK FA Q++ P K+IILDEAD
Sbjct: 108 LLGPA-YKNAVLELNASDDRGIDVVRNDIKMFA-------QKKVTLPPGRQKVIILDEAD 159
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ L++E + R+L
Sbjct: 160 SMTEAAQQALRRTMEIYSATTRFALACNMSDKIIEPIQSRCAILRYTRLTDEQILKRLLE 219
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
IC+ E + E L+ L +QGD+R+A+ LQ FG
Sbjct: 220 ICDAEKVPRTEEGLTALIFTAQGDMRQAVNNLQSTFSGFG 259
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 142/217 (65%), Gaps = 13/217 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ D+ Q+ V + L N PH+LF+GPPGTGKTT ALAIA +L+G +
Sbjct: 8 WVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYG-D 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC--PPYKIIILDEADSMT 168
++ VLELNASD+RGI ++R K+K FA P P+++IILDEAD+MT
Sbjct: 67 AWRENVLELNASDERGIAMIREKVKEFAKT----------MPTVKAPFRLIILDEADNMT 116
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ ALRR ME Y+ RF + NY S IIEP+ SRC+ FRF PL ++ + R+ I +
Sbjct: 117 PDAQQALRRIMEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLPKDAVLGRLREIAS 176
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+EG+ + +AL + +SQGD+R+AI LQ AA L G
Sbjct: 177 KEGVKVTDDALEAIWDVSQGDMRKAINTLQAAASLGG 213
>gi|448123321|ref|XP_004204663.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|448125599|ref|XP_004205221.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358249854|emb|CCE72920.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
gi|358350202|emb|CCE73481.1| Piso0_000523 [Millerozyma farinosa CBS 7064]
Length = 327
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 135/216 (62%), Gaps = 7/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ EE V L N PHM+ G PG GKTT+ +A++L GP
Sbjct: 12 PWVEKYRPKKLDDIVGNEETVERLKLIALDGNMPHMILSGLPGIGKTTSIHCLAYELLGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELY +ELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 72 ELYHQATMELNASDDRGIDVVRNKIKQFA-------QTKIQLPAGRHKIIILDEADSMTP 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ LS+E + R+L I
Sbjct: 125 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEQVLQRLLEITKL 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + ++E L L ++GD+R+AI LQ FG
Sbjct: 185 EDVKYNSEGLQALIFTAEGDMRQAINNLQSTVAGFG 220
>gi|126324700|ref|XP_001375103.1| PREDICTED: replication factor C subunit 5 [Monodelphis domestica]
Length = 342
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 154/231 (66%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + ++ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 23 PWVEKYRPQTLDELISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACARQLYKD 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 83 KEFNSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 135 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIAE 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + +G+P
Sbjct: 195 EKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETAYTCTGHP 244
>gi|410923359|ref|XP_003975149.1| PREDICTED: replication factor C subunit 5-like [Takifugu rubripes]
Length = 335
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + + PWVEKYRP+++ D+ +++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 8 PLQKRNLPWVEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLLFYGPPGTGKTSTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + S VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 ARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PLS + M R
Sbjct: 120 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPR 179
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ H+ +E +++ + + + ++S GD+RR++ LQ + + +T + + +G+P
Sbjct: 180 LEHVIQQESIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAY-EKVTEETAYNCTGHP 236
>gi|374628354|ref|ZP_09700739.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
gi|373906467|gb|EHQ34571.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
Length = 325
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 148/217 (68%), Gaps = 11/217 (5%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ W+EKYRPK++ DV Q+E+V L + ++T + PH+LF G G GKTT+A+A+A +
Sbjct: 3 ESNTIWIEKYRPKRLDDVVGQKEIVSRLKSYVKTKSLPHLLFTGTAGIGKTTSAVALAKE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEA 164
+G E + E+NASD+RGI+VVR +IK FA A +G + +KI+ LDEA
Sbjct: 63 FYG-EHWNVNFREMNASDERGIDVVRNQIKQFARTAPIGGAE---------FKILFLDEA 112
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME Y++ RF CNY S+II+P+ SRCA +RF+PL E ++ ++
Sbjct: 113 DALTNDAQAALRRTMENYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAITEELM 172
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
HI EGL L +A+S + +S GD+R+AI LQGAA
Sbjct: 173 HIAENEGLTLSEDAISAIIYVSAGDMRKAINALQGAA 209
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 142/214 (66%), Gaps = 11/214 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E LNL+ + + +S+GD+R+AI LQ AA
Sbjct: 173 EKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
>gi|344231186|gb|EGV63068.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 325
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 136/216 (62%), Gaps = 7/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N PHM+ G PG GKTT+ +A +L GP
Sbjct: 12 PWVEKYRPHKLDNIVGNEETVERLKLIANDGNMPHMIISGLPGIGKTTSIHCLALELLGP 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
ELYKS LELNASDDRGI+VVR +IK FA Q + P +KIIILDEADSMT
Sbjct: 72 ELYKSATLELNASDDRGIDVVRNRIKQFA-------QTKIQLPPGRHKIIILDEADSMTP 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ L+++ + +R+L +C
Sbjct: 125 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLTRLLEVCKL 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + E L L ++GD+R+AI LQ FG
Sbjct: 185 ENVQFNTEGLQALIFTAEGDMRQAINNLQSTVAGFG 220
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 142/226 (62%), Gaps = 10/226 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT + AIA Q++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTASTAIARQVYGDDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ ++++ I EG+ + + L + GD+RRAI LQ AA
Sbjct: 173 DAAVAAQTREIAAAEGIEVTDAGVDALVYAADGDMRRAINSLQAAA 218
>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
Length = 330
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 147/233 (63%), Gaps = 13/233 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPKQ+ D+ ++++ + + PH+LFYGPPGTGKT+T LA A +L+ P
Sbjct: 8 PWVEKYRPKQLDDLISHQDIISTIRKFINENRLPHLLFYGPPGTGKTSTILACAKELYTP 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGINVVR +I +FA+ SG +K+IILDEAD+M
Sbjct: 68 QQFNSMVLELNASDDRGINVVRNQIMSFASTRSIFKSG----------FKLIILDEADAM 117
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E +++ RF ICNY+S+II + SRC +FRF PL + + R+ ++
Sbjct: 118 TNDAQNALRRVIEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMNYVI 177
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EE + + + L S++ GD+RR I LQ + F + + + G+P
Sbjct: 178 EEEKIKVTEDGRQALLSLAHGDMRRVINILQSTSMAF-DEVNEDHVYTCVGHP 229
>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
Length = 335
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA
Sbjct: 8 PLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKTSTVLAS 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + + VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 AKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT DAQNALRR +E Y++ TRF ICNY+S+II L SRC +FRF PLS++ M R
Sbjct: 120 EADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPR 179
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ + +E +++ + + + ++S GD+RR++ LQ + +G +T ++ + +G+P
Sbjct: 180 LEFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDNVYTCTGHP 236
>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
Length = 351
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 8/237 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++ W+EKYRP ++ D+ E++ + ++ PH+L YGPPGTGKT+T LAIA +L
Sbjct: 10 DAKMWIEKYRPHELTDLLSHTEIISTIQRLIDGGKLPHLLLYGPPGTGKTSTVLAIAKKL 69
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILDE 163
FG L ++ VLELNASDDRGI+V+R +IK FA+ + + Q+ P K+IILDE
Sbjct: 70 FGNRLTQN-VLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKD---TTPDIKLIILDE 125
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD MT+DAQ ALRRT+E YSK RF ICNY+++II L SRC +FRF PL + + SR+
Sbjct: 126 ADQMTKDAQAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLKKHEVVSRL 185
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
IC EE + + L + +S GD+R+ + LQ FG IT ++ +G P
Sbjct: 186 EEICKEENVIYNQVGLDAIYRLSNGDMRKCVNILQSTFMSFG-QITEDNVHMCTGNP 241
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 145/229 (63%), Gaps = 12/229 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR RF PL +E + +R+ +I +
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
EG+ + +AL + +QGD+RRAI LQ AA G IT + + G
Sbjct: 176 EGVKISDDALEAIYEFTQGDMRRAINALQIAATT-GKEITEETVAKALG 223
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 137/211 (64%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV QEE+V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 79 -WRGNFLELNASDQRGIDVVRDRIKNFA---------RSSFGGHDYRIIFLDEADSLTND 128
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ + I E
Sbjct: 129 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAKAE 188
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
G+ L + L L + GD+RRAI LQ AA
Sbjct: 189 GIELTEDGLDALVYAAGGDMRRAINSLQAAA 219
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 142/213 (66%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ ++DV QE++V L + +E + PH+LF GP G GKTT+A AIA ++G
Sbjct: 14 EIWIEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA + G GY Y+II LDEADS+T
Sbjct: 74 DD-WRGNFLELNASDERGIDVVRDRIKNFARASFG------GYD---YRIIFLDEADSLT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ + +V I
Sbjct: 124 SDAQSALRRTMEQFSDNTRFVLSCNYSSKIIDPIQSRCAVFRFSPLGDDAVRKQVEAIAE 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ L + L L + GD+RRAI LQ AA
Sbjct: 184 TEGIELTEDGLDALVYAAGGDMRRAINSLQAAA 216
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 137/211 (64%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV QEE+V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 79 -WRGNFLELNASDQRGIDVVRDRIKNFA---------RSSFGGHDYRIIFLDEADSLTND 128
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ + I E
Sbjct: 129 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAAAE 188
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
G+ L + L L + GD+RRAI LQ AA
Sbjct: 189 GIELTEDGLDALVYAAGGDMRRAINSLQAAA 219
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 149/233 (63%), Gaps = 13/233 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E++ + ++ PH+LFYGPPGTGKT+T LA+A QL+ P
Sbjct: 11 PWVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA--VAVGSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR I FA+ SG +K++ILDEAD+M
Sbjct: 71 KEFNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSG----------FKLVILDEADAM 120
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E +++ TRF FICNY+S+II L SRC +FRF PL + + R+ +
Sbjct: 121 TNDAQNALRRVIEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQIVPRLEFVV 180
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EE +++ + L ++++GD+RR I LQ + + +T +++ +G+P
Sbjct: 181 REENVDMTEDGKKALITLAKGDMRRVINILQSTS-MAHEKVTEENVYLCTGHP 232
>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
carolinensis]
Length = 342
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 156/237 (65%), Gaps = 9/237 (3%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
V ++ PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGKT+T LA A
Sbjct: 17 VKSANLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACA 76
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
QL+ + + S VLELNASDDRGI +VR I +FA+ + ++G +K++ILDE
Sbjct: 77 KQLYKDKEFNSMVLELNASDDRGIGIVRGPILSFASTR--TIFKKG------FKLVILDE 128
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD+MT++AQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+
Sbjct: 129 ADAMTQEAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRL 188
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
H+ E +++ + + L ++S GD+RR++ LQ FG +T + + + +G P
Sbjct: 189 KHVIESEKVDVSDDGMKALVTLSNGDMRRSLNILQSTNMAFG-KVTEETVYTCTGQP 244
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 139/212 (65%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+S IIEP+ SR RF PL +E + +R+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ + +AL + +QGD+RRAI LQ AA
Sbjct: 176 EGVKVSDDALEAIYEFTQGDMRRAINALQIAA 207
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 142/226 (62%), Gaps = 10/226 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QE +V L + +E + PH+LF GP GTGK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLDDIHGQEAIVERLQSYIEQDDIPHLLFGGPAGTGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA Q++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIARQVYGDDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T++AQ ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDEAQAALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ ++++ I EG+ + E + L + GD+RRAI LQ AA
Sbjct: 173 DAAVAAQTREIAAAEGIEVTDEGVDALVYAADGDMRRAINSLQAAA 218
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 155/245 (63%), Gaps = 12/245 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E+++ ++ L PH+LFYGPPGTGKT+T LA A +L+
Sbjct: 9 PWVEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTSTILACARKLYST 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGI VVR +I +FA+ + +K+IILDEAD+MT+
Sbjct: 69 TQFNSMVLELNASDDRGIGVVRNQILSFASTRTIFNK--------GFKLIILDEADAMTK 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR ME + + TRF ICNY+++II + SRC +FRF PL+ + +SSR+ +I
Sbjct: 121 DAQNALRRVMEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKISSRLEYIIKV 180
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGGSGGAFR 289
E LN+ + L+ L +++ GD+R+A+ LQ ++ + + + + +G P +
Sbjct: 181 EQLNVTEDGLNALVTLANGDMRKALNILQSSSMAY-NEVDEDGVYKCTGRPRRDD---IK 236
Query: 290 GVQKW 294
+ KW
Sbjct: 237 KIMKW 241
>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
Length = 353
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 135/214 (63%), Gaps = 9/214 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + D+ +E++ L ++ PH+LFYGPPGTGKT+ +A A +L+
Sbjct: 27 SWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLY 86
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G Y S VLELNASDDRGI+VVR +IK FA Q K+IILDEADSM
Sbjct: 87 GKN-YGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQ--------GVKLIILDEADSM 137
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ +LRR +E Y+K RF ICNY+S+II L SRC +FRF PL+E +S RV HI
Sbjct: 138 TNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNESQVSGRVKHIA 197
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
E LN+ + + + QGD+RR + LQ +
Sbjct: 198 QLEKLNMTEDGFKAILRLGQGDMRRILNILQATS 231
>gi|363539784|ref|YP_004894673.1| mg622 gene product [Megavirus chiliensis]
gi|350610949|gb|AEQ32393.1| putative replication factor C small subunit [Megavirus chiliensis]
Length = 364
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PW+EKYRP+++KD + ++ + N+ H LFYGPPGTGKT+ LA+ ++
Sbjct: 7 NSVPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREI 66
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
F E + +RV+E NASDDRGIN VR KI A V + G P YKIIILDEADS
Sbjct: 67 F-KEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADS 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT++AQ+ALR +E YS TRF FICNYIS+I + + SRC FK L + M ++ I
Sbjct: 126 MTDEAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDGCMIDKLKEI 185
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+E + L E LST+ +S GD+R+AI LQ L+
Sbjct: 186 STKESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYLYS 224
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/262 (41%), Positives = 164/262 (62%), Gaps = 10/262 (3%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T ++P S+ + A ++SS PWVEKYRP+ + DVA ++V + +
Sbjct: 7 TAPMDIDAAAPPHSKGKAPLSAAAAVRSS-PWVEKYRPQSLADVAAHRDIVDTIDRLTDE 65
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA- 138
PH+L YGPPGTGKT+T LA+A +++G + Y + +LELNASD+RGI VVR +I+ FA
Sbjct: 66 NRLPHLLLYGPPGTGKTSTILAVARKIYGSQ-YGNMILELNASDERGIGVVRQQIQDFAS 124
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
A ++ G + P K+++LDEAD+MT+DAQ ALRR +E Y++ TRF ICN++++I
Sbjct: 125 AHSLSFGAK------PAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKI 178
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
I L SRC +FRF PL +S R+ HI EGL++D L+ L +S GD+R+A+ LQ
Sbjct: 179 IPALQSRCTRFRFAPLDGSHVSERLQHIIKSEGLDVDEGGLTALVRLSSGDMRKALNILQ 238
Query: 259 GAARLFGSSITSKDLISVSGYP 280
+ + IT + + +G P
Sbjct: 239 -STHMASQQITEEAVYLCTGNP 259
>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
Length = 318
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 145/224 (64%), Gaps = 11/224 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ D+ Q E ++ L + + T N PH+LF GPPG GKT A+AIA +LFG +
Sbjct: 6 WIEKYRPFKLDDIVGQGEAIKRLKSYISTNNLPHLLFSGPPGVGKTAAAVAIAKELFG-D 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ ELNASD+RGI+VVRTKIK F+ + G +KII LDEAD++T D
Sbjct: 65 AWHQNFTELNASDERGIDVVRTKIKDFSKTSPIGG--------ADFKIIFLDEADALTPD 116
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF+ LS E + RV +I +E
Sbjct: 117 AQSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRSLSYEAVEKRVRYIAEQE 176
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
GL + + + + +SQGD+R+AI LQ +A + + KD I
Sbjct: 177 GLQISEDGVEAIKYVSQGDMRKAINALQASALI--DDVIDKDTI 218
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 141/214 (65%), Gaps = 11/214 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E L L+ + + +S+GD+R+AI LQ AA
Sbjct: 173 EKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
>gi|156083805|ref|XP_001609386.1| replication factor C subunit 4 [Babesia bovis T2Bo]
gi|154796637|gb|EDO05818.1| replication factor C subunit 4 [Babesia bovis]
Length = 306
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 149/235 (63%), Gaps = 9/235 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ W+EKYRP +KDV EV R L N P++L GPPGTGKTT+ L +AH++
Sbjct: 2 SNDIWIEKYRPGILKDVIGNPEVTRRLEVIAREGNMPNLLLCGPPGTGKTTSILCLAHEM 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G +K+ VLELNASDDRG++VVR IK FA +V P +KIIILDE DS
Sbjct: 62 LGNH-FKNAVLELNASDDRGVDVVRGAIKNFAKKSVV-------LPPNKHKIIILDEVDS 113
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MTE AQ ALRR ME YSK TRF CN ++IIEP+ SRCA R++PL +E++ +R++HI
Sbjct: 114 MTEAAQQALRRIMEIYSKTTRFALACNQSTKIIEPIQSRCAVIRYEPLQDEMILTRLIHI 173
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
C EE + + + L + GD+RRA+ LQ + + + ITS+++ V P+
Sbjct: 174 CKEENVQYTNDGMEALLFTANGDMRRAVNNLQNVSSGY-NLITSQNVYKVCDVPS 227
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 145/211 (68%), Gaps = 9/211 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A ++FGP
Sbjct: 24 PWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ +++ VLELNASDDRGI VVR +IK+FA+ +V S +GG+ K+I+LDEAD+MT
Sbjct: 84 Q-FRNSVLELNASDDRGIEVVREQIKSFASTKSVFSS--KGGF-----KLIVLDEADAMT 135
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+ AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + + R+ H+ +
Sbjct: 136 QAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVID 195
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EG + + L +S+GD+RRA+ LQ
Sbjct: 196 TEGCKITQDGKEALLKLSRGDMRRALNVLQA 226
>gi|385806402|ref|YP_005842800.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
gi|383796265|gb|AFH43348.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
Length = 326
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 139/211 (65%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ + ++ QEE + L ++ N PHMLF GPPGTGKTT ALA AH L+G
Sbjct: 12 WAEKYRPRSLDEIVDQEETIIRLKKFVKEKNAPHMLFAGPPGTGKTTAALAFAHDLYGKN 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ VLELNASD+RGI+V+R KIK FA +V G P+K+IILDE+D++T D
Sbjct: 72 -YQQFVLELNASDERGIDVIRGKIKEFARTSVVGG--------VPFKLIILDESDNLTSD 122
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME ++ +RF I NY S+IIEP+ SR A FRF PL +E + R+ I E
Sbjct: 123 AQQALRRMMENFTLTSRFILIANYPSKIIEPIQSRTALFRFSPLKKEDVIKRLKWILENE 182
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
++ + AL + IS+GD+R+AI LQ A+
Sbjct: 183 SVSYEESALEAVFEISEGDMRKAINVLQSAS 213
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 153/234 (65%), Gaps = 9/234 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP+ + DVA ++V + + PH+L YGPPGTGKT+T LA+A +++
Sbjct: 35 SSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIY 94
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI VVR +I+ FA A ++ G + P K+++LDEAD+
Sbjct: 95 GSQ-YGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAK------PAVKLVLLDEADA 147
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ ALRR +E Y++ TRF ICN++++II L SRC +FRF PL +S R+ HI
Sbjct: 148 MTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLRHI 207
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EGL++D LS L +S GD+R+++ LQ + + IT + + +G P
Sbjct: 208 IKSEGLDVDEGGLSALVRLSNGDMRKSLNILQ-STHMASQQITEEAVYLCTGNP 260
>gi|341038392|gb|EGS23384.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 388
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 143/218 (65%), Gaps = 6/218 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +E+ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPATLSDVSGHQDILATINKFIESNRLPHLLFYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI VVR +IKTFA+ +GS R G +K+IIL
Sbjct: 99 IYGAENMRQMVLELNASDDRGIEVVREQIKTFASTKQIFTMGSSAGRAGIAA--FKLIIL 156
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ + S
Sbjct: 157 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRS 216
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EE + + +A+ +L +S+GD+RRA+ LQ
Sbjct: 217 LVDKVIEEENVKITPDAVESLVKLSRGDMRRALNVLQA 254
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 140/226 (61%), Gaps = 10/226 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EGDEQTAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E + V I E + + E + L + GD+RRAI LQ AA
Sbjct: 173 DEAVGGMVREIAAAEDIEVTDEGIDALVYAADGDMRRAINSLQAAA 218
>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
Length = 335
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + + PWVEKYRP+++ D+ ++++ + + PH+LFYGPPGTG+T+T LA
Sbjct: 8 PLQERNLPWVEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGETSTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + S VLELNASDDRGI+VVR + +FA+ + +RG +K++ILD
Sbjct: 68 AKQLYKEKEFTSMVLELNASDDRGIDVVRGPVLSFASTR--TIFKRG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD MT+DAQNALRR +E Y++ TR ICNY+S+II L SRC +FRF PLS + M R
Sbjct: 120 EADHMTQDAQNALRRVIEKYTENTRLCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPR 179
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ ++ +E ++++ + + ++S GD+RR++ LQ + +G +T + + +G+P
Sbjct: 180 LEYVVQQESIDINPGGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHP 236
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 159/256 (62%), Gaps = 7/256 (2%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T +SP+K + V P + PWVEKYRP+ + DVA ++V + PH
Sbjct: 14 TYTASPDKGKSVVFAGNPPAAGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPH 73
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
+L YGPPGTGKT+T LA+A +L+G + Y++ +LELNASDDRGI+VVR +I+ FA+ S
Sbjct: 74 LLLYGPPGTGKTSTILAVARKLYGSQ-YQNMILELNASDDRGIDVVRQQIQDFASTQSLS 132
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
+ K+++LDEAD+MT+DAQ ALRR +E Y+K TRF ICN++++II L S
Sbjct: 133 FGVKSSV-----KLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQS 187
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RC +FRF PL ++ R+ H+ EGL+++ L+ +S GD+R+A+ LQ + +
Sbjct: 188 RCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNILQ-STHMA 246
Query: 265 GSSITSKDLISVSGYP 280
IT + + +G P
Sbjct: 247 SQQITEEAVYLCTGNP 262
>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
Length = 335
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 157/238 (65%), Gaps = 9/238 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ + PWVEKYRP+ + D+ ++++ + + PH+LFYGPPGTGK +T LA
Sbjct: 8 PLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKISTILAC 67
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A QL+ + + + VLELNASDDRGI+VVR I +FA+ + ++G +K++ILD
Sbjct: 68 AKQLYKDKEFNAMVLELNASDDRGIDVVRGPILSFASTR--TIFKKG------FKLVILD 119
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT DAQNALRR +E Y++ TRF ICNY+S+II L SRC + RF PLS++ M R
Sbjct: 120 EADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQDQMIPR 179
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ H+ +E +++ + + + ++S GD+RR++ LQ + +G +T ++ + +G+P
Sbjct: 180 LEHVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDNVYTCTGHP 236
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 140/226 (61%), Gaps = 10/226 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + DV QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EADEQAAATATGREIWIEKYRPQTLDDVHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E +S V I E + + + L + GD+RRAI LQ AA
Sbjct: 173 DEAVSGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAAA 218
>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 152/234 (64%), Gaps = 9/234 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 38 AAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 97
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI+VVR +I+ FA A ++ G R P K+++LDEAD+
Sbjct: 98 GSQ-YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR------PSVKLVLLDEADA 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ ALRR +E Y++ TRF ICN++++II L SRC +FRF PL + R+ HI
Sbjct: 151 MTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHI 210
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EGL++D L+ L +S GD+R+A+ LQ + + IT + + +G P
Sbjct: 211 IKSEGLSVDEGGLTALVRLSNGDMRKALNILQ-STHMASQQITEEAVYLCTGNP 263
>gi|219363377|ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 152/234 (64%), Gaps = 9/234 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 38 AAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 97
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI+VVR +I+ FA A ++ G R P K+++LDEAD+
Sbjct: 98 GSQ-YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR------PSVKLVLLDEADA 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ ALRR +E Y++ TRF ICN++++II L SRC +FRF PL + R+ HI
Sbjct: 151 MTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHI 210
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EGL++D L+ L +S GD+R+A+ LQ + + IT + + +G P
Sbjct: 211 IKSEGLSVDDGGLTALVRLSNGDMRKALNILQ-STHMASQQITEEAVYLCTGNP 263
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 141/208 (67%), Gaps = 9/208 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVE++RP ++ D+ QE V L + + PH+LFYGPPG GKTT ALA+A +L+G +
Sbjct: 9 WVERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYG-D 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++S VLELNASD+RGI+V+R K+K FA + +G P P +K++ILDEAD+MT D
Sbjct: 68 SWRSSVLELNASDERGIDVIREKVKEFAR-TIPTG------PVP-FKLVILDEADNMTSD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF + NYIS IIEP+ SRCA FRF PL +E + R+ I E
Sbjct: 120 AQQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKET 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQ 258
G+ + + L + +SQGD+R+AI LQ
Sbjct: 180 GVEVTEDGLEAIWEVSQGDMRKAINTLQ 207
>gi|358056280|dbj|GAA97763.1| hypothetical protein E5Q_04442 [Mixia osmundae IAM 14324]
Length = 382
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 145/231 (62%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L NCPH++ G PG GKTT+ LA+AH L G
Sbjct: 62 PWVEKYRPAVLDDIVGNEETIERLKVIARDGNCPHIIISGQPGIGKTTSILALAHALLG- 120
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IKTFA Q++ P +KIIILDEADSMT
Sbjct: 121 KAYKEGVLELNASDERGIDVVRNRIKTFA-------QKKVTLPAGRHKIIILDEADSMTP 173
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ LS++ + R++ IC+
Sbjct: 174 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYARLSDKQLLKRIVEICDM 233
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + +AL++L S GD+R+AI LQ FG ++S+ + V P
Sbjct: 234 EQVKYSDDALASLIFTSDGDMRQAINNLQSTYSGFG-FVSSEAVFKVCDQP 283
>gi|254564511|ref|XP_002489366.1| replication factor C subunit [Komagataella pastoris GS115]
gi|238029162|emb|CAY67082.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328349795|emb|CCA36195.1| replication factor C subunit 2/4 [Komagataella pastoris CBS 7435]
Length = 324
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 138/218 (63%), Gaps = 8/218 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MA L+ PWVEKYRPK +KD+ E+ + L N PHM+ G PG GKTT+
Sbjct: 1 MAAPLKLELPWVEKYRPKLLKDIVGNEDTIERLKAFAIDGNVPHMIISGLPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G ++Y VLELNASDDRGI VVR KIK FA ++ P +KI+I
Sbjct: 61 CLAHELLG-DMYYDAVLELNASDDRGIEVVRNKIKQFA-------HKKVSLPPGRHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRC+ R+ L +E +
Sbjct: 113 LDEADSMTPGAQQALRRTMEIYSGTTRFVFACNMSNKIIEPLQSRCSILRYSKLYDEQVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
SR+L+IC EEG+ + L L ++GD+R+AI LQ
Sbjct: 173 SRLLYICKEEGVKYTDDGLEALIFTAEGDMRQAINNLQ 210
>gi|255955413|ref|XP_002568459.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590170|emb|CAP96342.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 392
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 148/226 (65%), Gaps = 6/226 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + +ET PH+L YGPPGTGKT+T LA+A +
Sbjct: 37 QDNLPWVEKYRPSSLDDVSGHQDILATINRFVETNRLPHLLLYGPPGTGKTSTILALARR 96
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + + VLELNASDDRGI+VVR +IKTFA+ + + Q G P +K+IILD
Sbjct: 97 IYGTKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFNMAPQGTAGSPLAGFKLIILD 156
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + +
Sbjct: 157 EADAMTSTAQMALRRIMERYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEVDIRTL 216
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268
V + +EG+ + +A+ +L ++S+GD+RRA+ LQ F SSI
Sbjct: 217 VDQVIEKEGVKIQPDAVDSLVTLSKGDMRRALNVLQAC---FASSI 259
>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
Length = 334
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 149/231 (64%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ D+ +++++ + ++ PH+LFYGPPGTGKT+T LA A Q++ P
Sbjct: 11 PWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR +I +FA+ R + P K+IILDEAD+MT
Sbjct: 71 QQFSSMVLELNASDDRGIGIVRGQILSFAST-------RTIFKAGP-KLIILDEADAMTN 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y++ RF ICNY+ +II L SRC +FRF PL ++ + R+ I
Sbjct: 123 DAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTT 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EG+ + + L ++S GD+R+ + LQ + L +T ++ + G+P
Sbjct: 183 EGVKMSEGGMKALLTLSGGDMRKVLNTLQ-STWLAYRDVTEDNVYTCVGHP 232
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 141/213 (66%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + ++ + HMLF GP GTGKTT+A AIA +L+G
Sbjct: 11 EVWIEKYRPQTLSDVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYG 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK+FA R + Y+II LDEAD++T
Sbjct: 71 DD-WQEHFLELNASDERGIDVVRDRIKSFA---------RTSFGGVDYRIIFLDEADALT 120
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL +E + + + HI +
Sbjct: 121 SDAQSALRRTMEQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSPLGDEAVEAEIRHIAD 180
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EEG+ L + + L + GD+R+AI LQ A+
Sbjct: 181 EEGIELTDDGVDALVYAAGGDMRKAINGLQAAS 213
>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 152/234 (64%), Gaps = 9/234 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 38 AAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 97
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + Y + +LELNASD+RGI+VVR +I+ FA A ++ G R P K+++LDEAD+
Sbjct: 98 GSQ-YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR------PSVKLVLLDEADA 150
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ ALRR +E Y++ TRF ICN++++II L SRC +FRF PL + R+ HI
Sbjct: 151 MTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHI 210
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EGL++D L+ L +S GD+R+A+ LQ + + IT + + +G P
Sbjct: 211 IKSEGLSVDDGGLTALVRLSNGDMRKALNILQ-STHMASQQITEEAVYLCTGNP 263
>gi|32451662|gb|AAH54598.1| Rfc4 protein [Danio rerio]
Length = 202
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/153 (66%), Positives = 120/153 (78%), Gaps = 1/153 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +
Sbjct: 30 QRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARE 89
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GP+LY+ RVLELNASD+RGI VVR K+K FA + V +G R G CPP+KIIILDEAD
Sbjct: 90 LYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTV-AGTRPDGKTCPPFKIIILDEAD 148
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
SMT AQ ALRRTME S+ TRF ICNY+SR+
Sbjct: 149 SMTSAAQAALRRTMEKESRTTRFCLICNYVSRL 181
>gi|425772715|gb|EKV11110.1| hypothetical protein PDIG_52530 [Penicillium digitatum PHI26]
gi|425775221|gb|EKV13502.1| hypothetical protein PDIP_47760 [Penicillium digitatum Pd1]
Length = 393
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 147/226 (65%), Gaps = 6/226 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + +ET PH+L YGPPGTGKT+T LA+A +
Sbjct: 38 QDNLPWVEKYRPSSLDDVSGHQDILATINRFVETNRLPHLLLYGPPGTGKTSTILALARR 97
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + + VLELNASDDRGI+VVR +IKTFA+ + + Q G P +K+IILD
Sbjct: 98 IYGTKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFNMAPQGTAGSPLAGFKLIILD 157
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + +
Sbjct: 158 EADAMTSTAQMALRRIMERYTSNTRFCVIANYTHKLSPALLSRCTRFRFSPLKEVDIRTL 217
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268
V + EG+ + +A+ +L ++S+GD+RRA+ LQ F SSI
Sbjct: 218 VDKVIENEGVRMQPDAVDSLVTLSKGDMRRALNVLQAC---FASSI 260
>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 390
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 138/214 (64%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ ++++ + ++T PH+LFYGPPGTGKT+T LA+A +
Sbjct: 42 EDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP+ + VLELNASDDRGI VVR +IKTFA+ YK+IILDEAD
Sbjct: 102 IYGPKNMRQMVLELNASDDRGIEVVREQIKTFASTKQIFSMNSATVSPGAYKLIILDEAD 161
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + V
Sbjct: 162 AMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKESDIRVLVDK 221
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ EE + ++AEA L +S+GD+RRA+ LQ
Sbjct: 222 VIMEENVQINAEATDALVRLSKGDMRRALNVLQA 255
>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
gi|166225155|sp|A4FZ74.1|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
Length = 315
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 141/214 (65%), Gaps = 11/214 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E L L+ + + +S+GD+R+AI LQ AA
Sbjct: 173 EKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
>gi|311977902|ref|YP_003987022.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|82050828|sp|Q5UQ72.1|RFCS4_MIMIV RecName: Full=Putative replication factor C small subunit L510;
Short=RFC small subunit L510; AltName: Full=Clamp loader
small subunit L510
gi|55417124|gb|AAV50774.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|308204876|gb|ADO18677.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061447|gb|AEJ34751.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|351737669|gb|AEQ60704.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257335|gb|EJN40943.1| putative replication factor C subunit [Acanthamoeba polyphaga
lentillevirus]
Length = 363
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 138/212 (65%), Gaps = 1/212 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRPK+++D+ + ++ + N+ + H LFYGPPGTGKT+ LA+ ++F
Sbjct: 6 SVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIF 65
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E +++RV+E NASDDRGIN VR KI A V + G P YKIIILDEADSM
Sbjct: 66 -KEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T++AQ+ALR +E YS TRF FICNYI++I + + SRC+ FK LS+E M ++ I
Sbjct: 125 TDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDIS 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+E + L L T+ +S GD+R+AI LQ
Sbjct: 185 LKESMELPKNILHTIIDVSNGDMRKAIMLLQN 216
>gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|343484218|dbj|BAJ49872.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 327
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 148/235 (62%), Gaps = 10/235 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ DV +QE+VV L N + + N PHMLF GPPGTGKT TA A A LFGP
Sbjct: 10 PWVEKYRPRRLDDVVNQEQVVEALKNIVVSKNVPHMLFAGPPGTGKTATAHAFAQDLFGP 69
Query: 110 E-LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ +E+NASD+RGI +R ++KT+A R + +++++LDE+D +T
Sbjct: 70 RYIEDGHFIEINASDERGIETIRERVKTYA--------RSVPFGGIGFRLLLLDESDQLT 121
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+ AQ+A RRTME +S RF NY +RIIEP+ SRCA RFKPLS++++ + + I
Sbjct: 122 DAAQHAFRRTMEQFSTTCRFILAANYSNRIIEPIQSRCAVLRFKPLSKDMVETMLKKIAA 181
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGG 283
E + LD A+ + S GD+R+AI LQ AA + +I SK + V G + G
Sbjct: 182 SENIKLDDSAIDAIYEFSLGDMRKAINILQSAASI-SKTIDSKTIYDVMGVVSRG 235
>gi|224009073|ref|XP_002293495.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 150/234 (64%), Gaps = 12/234 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
PWVEKYRP +++D+ E++V +LT +++ N PH+L YGPPGTGKT+T +A A +++G
Sbjct: 1 MPWVEKYRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYG 60
Query: 109 P-ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
Y S LELNASD RGI+VVR +IK FA G R+ + K+IILDEAD+M
Sbjct: 61 STAAYSSMALELNASDSRGIDVVRNEIKEFA------GTRQLFHS--GIKLIILDEADAM 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E ++K RF ICNY+S+II L SRC +FRF PL +E + SR++ +
Sbjct: 113 TSDAQFALRRVIEKHTKNARFCLICNYVSKIIPALQSRCTRFRFAPLKQEQIRSRLVEVA 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS-KDLISVSGYP 280
+ E N + + + +S GD+RR + LQ A GS I K++ SG P
Sbjct: 173 DAEKCNYTEDGIQAILDLSGGDMRRVLNLLQSTA--MGSEIVDEKNVYMTSGAP 224
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/212 (49%), Positives = 138/212 (65%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI V+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGIGVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+S IIEP+ SR RF PL +E + SR+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ + +AL + +QGD+R+AI LQ AA
Sbjct: 176 EGVKVSDDALEAIYEFTQGDMRKAINALQVAA 207
>gi|435850632|ref|YP_007312218.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661262|gb|AGB48688.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 333
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 149/226 (65%), Gaps = 11/226 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP ++ D+ Q E + L + +++ N PH+LF GPPG GKT TA++IA +LF
Sbjct: 19 EIWIEKYRPMRLDDIVGQTEAIARLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKELFA 78
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
++ ELNASD+RGI+VVRTKIK+FA + G +KII LDEAD++T
Sbjct: 79 DS-WRENFTELNASDERGIDVVRTKIKSFAKTSPIGG--------ADFKIIFLDEADALT 129
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF+PLS++ ++ RV + +
Sbjct: 130 SDAQAALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAVTERVRFVAS 189
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
EG+ + + + + ++QGD+R+AI LQ A+ + ++ KD I
Sbjct: 190 NEGIEVATDGMEAIKYVAQGDMRKAINALQAASLV--DNVVHKDTI 233
>gi|50555415|ref|XP_505116.1| YALI0F07337p [Yarrowia lipolytica]
gi|49650986|emb|CAG77923.1| YALI0F07337p [Yarrowia lipolytica CLIB122]
Length = 333
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 138/228 (60%), Gaps = 9/228 (3%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
KRK P + PWVEKYRP + DV E V L + N P++L G PG GKTT
Sbjct: 9 KRKGEPEFE--LPWVEKYRPMYLDDVVGHTETVERLKIMAKDGNIPNLLISGLPGIGKTT 66
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
+ +A L GP+LYK VLELNASDDRGI VVR KIK FA Q++ P +K
Sbjct: 67 SVHCLARTLLGPQLYKDAVLELNASDDRGIEVVRGKIKNFA-------QKKVTMPPGKHK 119
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
IIILDEADSMT AQNAL+RTME YS TRF F CN ++IIE + SRCA RF LS E
Sbjct: 120 IIILDEADSMTAGAQNALKRTMELYSDTTRFAFACNQSNKIIEAIQSRCAILRFGRLSNE 179
Query: 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+ R+LHI E + + LS L ++GD+R+AI LQG FG
Sbjct: 180 QVLERLLHIVEAENVQCSDDGLSALIFSAEGDMRQAINNLQGTVSGFG 227
>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
pisum]
Length = 329
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/247 (42%), Positives = 149/247 (60%), Gaps = 16/247 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E++++ + ++ PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 9 PWVEKYRPNTLDDLISHEDIIQTIGKFIKEDQLPHLLFYGPPGTGKTSTILACAKQLYTP 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA--VAVGSGQRRGGYPCPPYKIIILDEADSM 167
++S VLELNASDDRGINVVR ++ FA+ SG +K+IILDEAD+M
Sbjct: 69 AQFRSMVLELNASDDRGINVVRGQVLNFASTRTIFKSG----------FKLIILDEADAM 118
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E ++ RF ICNY+S+II L SRC +FRF PL + + R+ ++
Sbjct: 119 TNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLDSKQIMPRLEYVV 178
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGGSGGA 287
+E + + + L ++QGD+R+ + LQ AA F + + + G+P
Sbjct: 179 EQEKVKVTEDGKKALIDLAQGDMRKVLNILQSAATAF-PEVNEDSVYTCVGHPLKSD--- 234
Query: 288 FRGVQKW 294
+ KW
Sbjct: 235 IMNILKW 241
>gi|384248832|gb|EIE22315.1| DNA replication factor C complex subunit 5 [Coccomyxa
subellipsoidea C-169]
Length = 334
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 151/239 (63%), Gaps = 10/239 (4%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP + PWVEKYRPK + DVA +E++ + ++ PH+LFYGPPGTGKT+T LA
Sbjct: 7 APSIIDDAPWVEKYRPKTLDDVAAHKEIIDTIKRLVKEDRFPHVLFYGPPGTGKTSTILA 66
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+A Q++G L +S VLELNASDDRGI +VR +I FA+ + +K++IL
Sbjct: 67 VARQMYGASL-RSMVLELNASDDRGIGIVREQIVDFASTKTMFSNK--------FKLVIL 117
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DE D+MT+DAQ ALRR +E Y++ TRF ICNY+++II L SRC +FRF PL++ + S
Sbjct: 118 DECDAMTKDAQAALRRVIEKYTRNTRFCLICNYVNKIIPALQSRCTRFRFPPLADSYVRS 177
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
R+ + + E +N+ L + ++ GD+RR + LQ A + ++ + + +G P
Sbjct: 178 RLQFVIDSERVNMGDGGLDAVVTLGAGDMRRTLNILQ-ATHMSADVVSEEAVYQCTGNP 235
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 144/211 (68%), Gaps = 9/211 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A ++FGP
Sbjct: 25 PWVEKYRPATLEDLVSHKDITSTIQNFIDRNRLPHLLFYGPPGTGKTSTILAMARKIFGP 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ +++ VLELNASDDRGI VVR +IK FA+ +V S +GG+ K+I+LDEAD+MT
Sbjct: 85 Q-FRNSVLELNASDDRGIEVVREQIKGFASTKSVFSS--KGGF-----KLIVLDEADAMT 136
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+ AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + + R+ H+
Sbjct: 137 QAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLQLDQVEDRLNHVIE 196
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EG + + L +S+GD+RRA+ LQ
Sbjct: 197 NEGCKITQDGKEALLKLSRGDMRRALNVLQA 227
>gi|71413122|ref|XP_808715.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70872975|gb|EAN86864.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 149/239 (62%), Gaps = 8/239 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A+ L
Sbjct: 16 STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP----YKIIILD 162
FG + ++ VLE+NASDDRGI+VVR +++ F++ S P P +K++ILD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFSST---SSFYFASAPAAPTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD M+ DAQ ALRR +E Y+K RF +CN+I++II L SRC +FRF P+ + M R
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLPR 192
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
+ + EEG+ E L +S GDLRR + +Q +A G IT + + V+G PT
Sbjct: 193 LKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTMQASAMSAG-EITEESVYRVTGNPT 250
>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
Length = 390
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 139/214 (64%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ ++++ + ++T PH+LFYGPPGTGKT+T LA+A +
Sbjct: 43 EDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARR 102
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G + + VLELNASDDRGI+VVR +IKTFA+ + YK+IILDEAD
Sbjct: 103 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEAD 162
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + V
Sbjct: 163 AMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDK 222
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ EE + ++AEA L +S+GD+RRA+ LQ
Sbjct: 223 VIAEENVQINAEATDALVRLSKGDMRRALNVLQA 256
>gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
Length = 395
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 151/239 (63%), Gaps = 6/239 (2%)
Query: 27 QSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
Q S + + + KR A PV Q + PWVEKYRP + DV+ ++++ + +E P
Sbjct: 20 QFSSDNTGKKAKRTAADLPVEAQDNLPWVEKYRPNTLDDVSGHQDILTTINKFVEANRLP 79
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---V 140
H+L YGPPGTGKT+T LA+A +++G + VLELNASDDRGI+VVR +IKTFA+ +
Sbjct: 80 HLLLYGPPGTGKTSTILALARRIYGTSNMRQMVLELNASDDRGIDVVREQIKTFASTKQI 139
Query: 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ G YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY ++
Sbjct: 140 FSMAPSASTGSSLASYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSP 199
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
L SRC +FRF PL E+ + S V H+ +E + + EA+S+L +S+GD+RRA+ LQ
Sbjct: 200 ALLSRCTRFRFSPLKEQDIRSLVDHVIEKEQVQIQPEAVSSLVKLSKGDMRRALNVLQA 258
>gi|347832701|emb|CCD48398.1| similar to replication factor C subunit 3 [Botryotinia fuckeliana]
Length = 390
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 139/214 (64%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ ++++ + ++T PH+LFYGPPGTGKT+T LA+A +
Sbjct: 43 EDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARR 102
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G + + VLELNASDDRGI+VVR +IKTFA+ + YK+IILDEAD
Sbjct: 103 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEAD 162
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + V
Sbjct: 163 AMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDK 222
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ EE + ++AEA L +S+GD+RRA+ LQ
Sbjct: 223 VIAEENVQINAEATDALVRLSKGDMRRALNVLQA 256
>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 382
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 140/209 (66%), Gaps = 9/209 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++++ E++V +L + + PH+LFYGPPGTGKT+T LA A +L+G
Sbjct: 64 PWVEKYRPSSLEELVAHEDIVGILQKLIASNKLPHLLFYGPPGTGKTSTILACAKKLYGA 123
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +K VLELNASDDRGI+VVR +IK FA G +R K++ILDEAD+MT
Sbjct: 124 D-FKMMVLELNASDDRGIDVVRGQIKEFA------GTKR--LFSSGVKLVILDEADAMTN 174
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR +E Y+K TRF ICNY+++II L SRC KFRF PL E + R+ H+ ++
Sbjct: 175 DAQFALRRVIEKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIQGRLQHVVDQ 234
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + + + + + + QGD+RR + LQ
Sbjct: 235 EKVTITPDGVEAVMRLGQGDMRRVLNLLQ 263
>gi|30913228|sp|O74111.1|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 subunit 3
gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
Length = 338
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 142/216 (65%), Gaps = 13/216 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++S PWVEKYRP + +VA E V+ + +E PH+LF+GPPGTGKTTT +A+A Q
Sbjct: 14 ENSLPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQ 73
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDE 163
++G Y++ +LELNASD+RGI+VVR +IKTFA+ SG +K++ILDE
Sbjct: 74 IYGKN-YRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----------FKLVILDE 122
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD+MT AQNALRR +E YS TRF + NY ++ L SRC +FRF PL E+ + R+
Sbjct: 123 ADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRL 182
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
H+ +E ++L EA +L +S GD+RRA+ LQ
Sbjct: 183 AHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQA 218
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 136/211 (64%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GKTT+A AIA L+G +
Sbjct: 19 WIEKYRPQTLDDIYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARTLYGDD 78
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R P Y II LDEADS+T D
Sbjct: 79 -WRGNFLELNASDERGIDVVRDRIKNFA--------RSSFNPERGYTIIFLDEADSLTND 129
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ + I E
Sbjct: 130 AQSALRRTMEEFSDKTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQTRDIAEAE 189
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
G+ L L L + GD+RRAI LQ AA
Sbjct: 190 GIELTEGGLDALVYAAGGDMRRAINSLQAAA 220
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 141/214 (65%), Gaps = 11/214 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E L L+ + + +S+GD+R+AI LQ AA
Sbjct: 173 EKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
>gi|242010739|ref|XP_002426116.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212510163|gb|EEB13378.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 338
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 142/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP KDV ++ +R L E N P++L GPPG GKTTT L +A L GP
Sbjct: 20 PWIEKYRPVTFKDVVGNDDAIRRLAAFAEVGNVPNILIAGPPGVGKTTTILCLARILLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+ VR KIK FA Q++ P +KII+LDEADSMT+
Sbjct: 80 S-FKEAVLELNASNDRGIDTVRNKIKMFA-------QQKVTLPKGKHKIIVLDEADSMTD 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS+ TRF F CN S+IIEPL SRCA RF L +E + ++L IC
Sbjct: 132 GAQQALRRTMEMYSQTTRFAFACNDSSKIIEPLQSRCAVLRFTKLKDEEILKKLLQICES 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E ++ + L + +QGDLR+A+ LQ F S + S ++ V P
Sbjct: 192 EQISYTNDGLEAVIFSAQGDLRQALNNLQSTHNGF-SHVNSDNVFKVCDEP 241
>gi|378727708|gb|EHY54167.1| replication factor C subunit 3/5 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 153/242 (63%), Gaps = 9/242 (3%)
Query: 27 QSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
Q S + + + KR +A PV + + PWVEKYRP + DV+ ++++ + +E P
Sbjct: 21 QFSSDNTAGKQKRIVADLPVEAEDNLPWVEKYRPNTLDDVSGHKDILATINRFIEQNKLP 80
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA----- 138
H+L YGPPGTGKT+T LA+A Q++GP+ + VLELNASDDRGI+VVR +IKTFA
Sbjct: 81 HLLLYGPPGTGKTSTILALARQIYGPKNMRQMVLELNASDDRGIDVVREQIKTFASTKQI 140
Query: 139 -AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ + G + +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY +
Sbjct: 141 FSASTQQGPSGAKFGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHK 200
Query: 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
+ L SRC +FRF PL +E + V H+ EE +N+ +A+ +L +S+GD+RRA+ L
Sbjct: 201 LSPALLSRCTRFRFSPLKKEDIRRLVDHVIAEEKVNIAPDAVESLVELSKGDMRRALNVL 260
Query: 258 QG 259
Q
Sbjct: 261 QA 262
>gi|342183622|emb|CCC93102.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 290
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 145/235 (61%), Gaps = 6/235 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + +V EE++ +++ N PH+LFYGPPGTGKTTT A AH L+G
Sbjct: 19 PWVEKYRPATLSEVVAHEEILETTQRLMDSGNMPHLLFYGPPGTGKTTTIKASAHYLYGK 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFA---AVAVGSGQRRGGYPCPPYKIIILDEADS 166
E ++ VLE+NASDDRGI+VVR +I+ FA +V S + +K++ILDEAD
Sbjct: 79 ERIRANVLEMNASDDRGIDVVRNQIREFASTSSVFFNSASKTSAMSS--FKLVILDEADQ 136
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
M+ DAQ ALRR +E Y++ RF +CN+I++II L SRC +FRF P+ + M R+ I
Sbjct: 137 MSSDAQAALRRIIEKYTRNVRFCIVCNHINKIIPALQSRCTRFRFAPVKKAAMLPRLAFI 196
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
EE + + L +S GD+RR + LQ +A G IT + + +G PT
Sbjct: 197 AQEESIPFTNDGLVAAFRLSNGDMRRCLNTLQASAMSTG-EITEESVYRTTGNPT 250
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 138/211 (65%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
G+ + + L L + GD+RRAI LQ AA
Sbjct: 187 GIEVTEDGLDALVYAAGGDMRRAINSLQAAA 217
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 139/226 (61%), Gaps = 10/226 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ Q E+V L + + + PH+LF GP G GK
Sbjct: 3 EGDEQTAATATGREIWIEKYRPQTLDDIHGQSEIVERLQSYIAQDDVPHLLFSGPAGIGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E + V I E + + E + L + GD+RRAI LQ AA
Sbjct: 173 DEAVGGMVREIAAAEDIEVTDEGIDALVYAADGDMRRAINSLQAAA 218
>gi|388583685|gb|EIM23986.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 335
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 150/236 (63%), Gaps = 10/236 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S PWVEKYRP ++ DV E+++ + ++ PH+LFYGPPGTGKT+T LAIA +
Sbjct: 11 KSDLPWVEKYRPNELDDVVSHTEIIQTINQFIQKQRLPHLLFYGPPGTGKTSTILAIAKK 70
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G +K VLELNASDDRGI+VVR +IK+FA Q R + +K+IILDEAD
Sbjct: 71 IYGGN-WKRNVLELNASDDRGIDVVRDQIKSFA-------QTRTLFS-DGFKLIILDEAD 121
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
MT+ AQ ALRR +E Y+ TRF ICNY+++I + SRC +FRF PL + R++
Sbjct: 122 LMTQQAQGALRRIIEHYTPTTRFCIICNYVNKITPAIMSRCTRFRFSPLPYAHLDKRLVE 181
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA-ARLFGSSITSKDLISVSGYP 280
+ E + +D +A L ++++GD+RRA+ LQ I+ KD+ +V+ P
Sbjct: 182 VIENEAVQIDDDAKKALLNLTKGDMRRALNILQACHTACMPERISIKDVYNVTAAP 237
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 149/234 (63%), Gaps = 12/234 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ E++V + ++ + PHMLFYGPPGTGKT+ LA + ++FG
Sbjct: 16 PWVEKYRPKDLSDLVSHEDIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASREVFG- 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILDEADS 166
E S VLELNASDDRGI+V R +I FA+ +A+ +G +K+IILDEAD+
Sbjct: 75 ETSNSSVLELNASDDRGIDVARGRILNFASTKRIAIQAG-------TASFKLIILDEADA 127
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQNALRR +E ++ RF ICNY+S+II L SRC +FRF PL+ E + R+ +
Sbjct: 128 MTNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQILPRLQAV 187
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EE L + + L ++++GD+RR + LQ + F I ++ + +G+P
Sbjct: 188 VKEESLEMSPDGAKALLTLAKGDMRRILNILQSCSMAF-PVINESNIYACTGHP 240
>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 317
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/228 (47%), Positives = 148/228 (64%), Gaps = 13/228 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ D+ QE ++ L +E + P+++F GP G GKTTTALA+A ++ G
Sbjct: 4 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEERSMPNLMFTGPAGVGKTTTALALAREILG- 62
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD RGI+ VRT IK F + VG+ P++II LDE D+MT
Sbjct: 63 EYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGA----------PFRIIFLDEVDNMT 112
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRR ME Y+K + F CNY S+II+P+ SRCA FRF PL + SR+ +I
Sbjct: 113 KDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGRHIISRLEYIAE 172
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISV 276
+EGL + +AL T+ ++GDLR+AI LQ AA L G IT + V
Sbjct: 173 QEGLEYEPQALDTVVYFAEGDLRKAINILQSAASL-GEKITESSIYEV 219
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 140/213 (65%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + ++ QE++V L + ++ + H +F GP G GKTT+A AIA +L+G
Sbjct: 16 EVWIEKYRPQTLDEIVGQEDIVERLQSYVDRNDLSHFMFSGPAGIGKTTSATAIARELYG 75
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA + G GY Y+II LDEAD++T
Sbjct: 76 DD-WRDNFLELNASDERGIDVVRDRIKNFARTSFG------GYE---YRIIFLDEADALT 125
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ ALRRTME +S RF CNY S+II+P+ SRCA FRF PLS+E ++ + HI
Sbjct: 126 SDAQGALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFAPLSDEAVAEEMRHIAG 185
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EEG+ + L L + GD+R+AI LQ A+
Sbjct: 186 EEGIEFTDDGLDALVYAADGDMRKAINALQAAS 218
>gi|281344058|gb|EFB19642.1| hypothetical protein PANDA_008377 [Ailuropoda melanoleuca]
Length = 318
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 153/229 (66%), Gaps = 9/229 (3%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+ +
Sbjct: 1 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 60
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
+ S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+DA
Sbjct: 61 FGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQDA 112
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
QNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ EE
Sbjct: 113 QNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEK 172
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
++L + + L +++ GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 173 VDLSEDGMKALVTLASGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 220
>gi|440638884|gb|ELR08803.1| replication factor C subunit 3/5 [Geomyces destructans 20631-21]
Length = 393
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 140/217 (64%), Gaps = 3/217 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP ++DV+ ++++ + +ET PH+L YGPPGTGKT+T LA+A +
Sbjct: 43 EDTLPWVEKYRPDTLEDVSGHQDIIATINRFVETNRLPHLLLYGPPGTGKTSTVLALARR 102
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + + VLELNASDDRGI+VVR +IKTFA+ + + G YK+IILD
Sbjct: 103 IYGVKNMRQMVLELNASDDRGIDVVREQIKTFASTRQIFSSAPSEASGKSMATYKLIILD 162
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 163 EADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKERDIRVL 222
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EE +N+ EA L+ +S+GD+RRA+ LQ
Sbjct: 223 VDKVIEEETVNITREATEALTKLSKGDMRRALNVLQA 259
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/212 (48%), Positives = 138/212 (65%), Gaps = 12/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC-PPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A P P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTA----------PIKAPFKLVILDEADNMTS 114
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+S IIEP+ SR RF PL ++ + +R+ +I
Sbjct: 115 DAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAVIARLRYIAEN 174
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ +AL T+ +QGD+R+AI LQ AA
Sbjct: 175 EGIKASDDALETIFEFTQGDMRKAINALQIAA 206
>gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens]
gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens]
Length = 319
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 153/230 (66%), Gaps = 9/230 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
VEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+ +
Sbjct: 1 MVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 60
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+D
Sbjct: 61 EFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQD 112
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ EE
Sbjct: 113 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 172
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 173 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 221
>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica CLIB122]
Length = 358
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 147/232 (63%), Gaps = 11/232 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E VV L L PH+LFYGPPGTGKT+T LA+A +++GP
Sbjct: 30 PWVEKYRPDTLDDVTGHEGVVTTLKKLLANKKFPHLLFYGPPGTGKTSTILAVAREIYGP 89
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCP--PYKIIILDEAD 165
YKS VLELNASDDRGI+VVR +IK FA+ S Q +RGG +K++ILDEAD
Sbjct: 90 S-YKSMVLELNASDDRGIDVVRDQIKVFAS----SRQIFQRGGEENARSNFKLVILDEAD 144
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQNALRR +E Y+ TRF + NY ++ L SRC +FRF PL E + R++
Sbjct: 145 AMTNVAQNALRRVIEQYTTHTRFCILANYTHKLNPALLSRCTRFRFSPLPEAAIDKRIMQ 204
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+ + E + + +A + L +S+GD+RRA+ LQ G KD I++S
Sbjct: 205 VIDAEKVKIAPDAKAALLELSKGDMRRALNVLQACHT--GLEHPGKDTITLS 254
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 157/256 (61%), Gaps = 7/256 (2%)
Query: 25 TTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH 84
T + P+K++ V + PWVEKYRP + DVA ++V + PH
Sbjct: 16 TYTARPDKAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPH 75
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
+L YGPPGTGKT+T LA+A +L+G + Y++ +LELNASDDRGI+VVR +I+ FA S
Sbjct: 76 LLLYGPPGTGKTSTILAVARKLYGSQ-YQNMILELNASDDRGIDVVRQQIQDFA-----S 129
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q K+++LDEAD+MT+DAQ ALRR +E Y+K TRF ICN++++II L S
Sbjct: 130 TQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQS 189
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RC +FRF PL ++ R+ H+ EGL+++ L+ L +S GD+R+A+ LQ + +
Sbjct: 190 RCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQ-STHMA 248
Query: 265 GSSITSKDLISVSGYP 280
IT + + +G P
Sbjct: 249 SQQITEETVYLCTGNP 264
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 138/213 (64%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV QE++V L + +E + PH+LF GP G GKTT+A AIA ++G
Sbjct: 15 EIWIEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIYG 74
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEADS+T
Sbjct: 75 DD-WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGFDYRIIFLDEADSLT 124
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ + +V I
Sbjct: 125 SDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVREQVKDIAE 184
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
E + L + L L + GD+RRAI LQ AA
Sbjct: 185 TEEIELTEDGLDALVYAAGGDMRRAINSLQAAA 217
>gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior]
Length = 327
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 148/235 (62%), Gaps = 9/235 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRPK + ++ E +++ + ++ PH+L YGPPGTGKT+T LA A +
Sbjct: 7 QVNLPWVEKYRPKSLDELISHETIIKTINKYIDENQLPHLLLYGPPGTGKTSTILACARK 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+ P + S VLELNASDDRGI +VR +I +FA+ G +K+IILDEAD
Sbjct: 67 LYTPAQFNSMVLELNASDDRGIGIVRGQILSFAST--------GTMYKSAFKLIILDEAD 118
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PL+ E + R+ H
Sbjct: 119 AMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNH 178
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ E L + + L ++S GD+R+ I+ LQ +G ++ +++ + G+P
Sbjct: 179 VIEAENLKVTEDGKQALITLSGGDMRKVISVLQSTWFAYG-AVNEENVYNCVGHP 232
>gi|340056431|emb|CCC50763.1| putative replication factor C, subunit 3 [Trypanosoma vivax Y486]
Length = 374
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 144/234 (61%), Gaps = 2/234 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + +V EE++ +++ + PH LFYGPPGTGKTTT A AH LF
Sbjct: 37 SLPWVEKYRPSTLDEVVAHEEILSTTRRLIDSGSMPHFLFYGPPGTGKTTTVKACAHYLF 96
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E ++ VLE+NASDDRGI+VVR +++ FA+ + P +K++ILDEAD M
Sbjct: 97 GKERVRANVLEMNASDDRGIDVVRQQVREFASTS-SIFCTNSSNPVSSFKLVILDEADQM 155
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
+ DAQ ALRR +E Y+K RF ICN I++II L SRC +FRF P+ + M R+ +
Sbjct: 156 SGDAQAALRRIIEKYTKNVRFCIICNRINKIIPALQSRCTRFRFAPVKKGAMLPRLKFVV 215
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
EEG+ E L+ + GD+RR + +Q +A + +T + + +G PT
Sbjct: 216 QEEGVRFTEEGLAAAFRLCNGDMRRCLNIMQSSA-MSAGEVTEESVYRTTGNPT 268
>gi|448471999|ref|ZP_21601026.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
gi|445820426|gb|EMA70249.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
Length = 327
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 140/226 (61%), Gaps = 10/226 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QE +V L + ++ + PH+LF GP G GK
Sbjct: 3 EADEQTAATATGREIWIEKYRPQSLGDIHGQEAIVERLQSYIDQDDIPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREVYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDEADS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ ++ + I EG+ + + L + GD+RRAI LQ AA
Sbjct: 173 DAAVAGQTREIAAAEGIEVTDAGVDALVYAADGDMRRAINSLQAAA 218
>gi|320581211|gb|EFW95432.1| DNA replication factor C [Ogataea parapolymorpha DL-1]
Length = 325
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 149/235 (63%), Gaps = 15/235 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV Q++VV+ + + PH+LFYGPPGTGKT+T +A+A +L+G
Sbjct: 7 PWVEKYRPAKLDDVYGQKDVVQTVRKFAKEGRIPHLLFYGPPGTGKTSTIIALARELYGK 66
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
Y++ VLELNASDDRGI+VVR +IK FA+ SG +K+IILDEAD+M
Sbjct: 67 N-YRNMVLELNASDDRGIDVVRDQIKNFASTRQIFNSG----------FKLIILDEADAM 115
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
+ AQNALRR +E Y+K TRF + NY ++ L SRC +FRF PL++ + RV ++
Sbjct: 116 SNAAQNALRRVIEKYTKNTRFCILANYSHKLNPALLSRCTRFRFSPLADSALQDRVDYVI 175
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDLISVSGYP 280
EGL + ++A +L +S+GD+RRA+ LQ A G IT + G P
Sbjct: 176 KAEGLKIASDARQSLLELSEGDMRRALNVLQACATAVESGEEITQDMVYECVGAP 230
>gi|406863129|gb|EKD16177.1| activator 1 subunit 3 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 395
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 138/216 (63%), Gaps = 2/216 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ ++++ +T ++T PH+L YGPPGTGKT+T LA+A Q
Sbjct: 43 EDSLPWVEKYRPDTLEDVSGHQDILATITKFVDTNRLPHLLLYGPPGTGKTSTILALARQ 102
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDE 163
++G + + VLELNASDDRGI+VVR +IKTFA+ + P YK+IILDE
Sbjct: 103 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMNKTSTSASMPTYKLIILDE 162
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + V
Sbjct: 163 ADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRVLV 222
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ EE + ++ A L +S+GD+RRA+ LQ
Sbjct: 223 DKVITEENVQINESATDALVKLSKGDMRRALNVLQA 258
>gi|158285610|ref|XP_308395.4| AGAP007477-PA [Anopheles gambiae str. PEST]
gi|157020075|gb|EAA04621.4| AGAP007477-PA [Anopheles gambiae str. PEST]
Length = 341
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/261 (44%), Positives = 158/261 (60%), Gaps = 17/261 (6%)
Query: 21 QKFSTTQSSP-EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
++ ++T S+P E E K+K S PW+EKYRP++ +++ EE V L
Sbjct: 3 EEVASTSSAPGAPKEAEGKKK-------SLPWIEKYRPQRFEEIVGNEETVARLGIFASQ 55
Query: 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139
N P+++ GPPG GKTTT L +A L GP ++ VLELNAS++RGI+VVR+KIK FA
Sbjct: 56 GNAPNIIIAGPPGVGKTTTILCLARILLGPN-FREAVLELNASNERGIDVVRSKIKMFA- 113
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
Q++ P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN +II
Sbjct: 114 ------QQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACNTSEKII 167
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EP+ SRCA RF LS+ + ++V+ IC E L+ D + L + +QGD+R+A+ LQ
Sbjct: 168 EPIQSRCAMLRFSKLSDAQVLAKVVEICQHENLSYDEDGLEAIVFTAQGDMRQALNNLQS 227
Query: 260 AARLFGSSITSKDLISVSGYP 280
A FG I+ ++ V P
Sbjct: 228 TANGFG-HISGANVFKVCDEP 247
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 147/230 (63%), Gaps = 7/230 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+G +
Sbjct: 34 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 93
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y + +LELNASDDRGI+VVR +I+ FA S Q P K+++LDEAD+MT+D
Sbjct: 94 -YHNMILELNASDDRGIDVVRQQIQDFA-----STQSLSFGVKPSVKLVLLDEADAMTKD 147
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR +E Y+K TRF ICN++++II L SRC +FRF PL ++ R+ H+ N E
Sbjct: 148 AQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAE 207
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
L++ LS L +S GD+R+A+ LQ + + IT + + +G P
Sbjct: 208 RLDVQDSGLSALVRLSNGDMRKALNILQ-STHMASQQITEEAVYLCTGNP 256
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 141/215 (65%), Gaps = 12/215 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V +E+++ L N +E + PH+LF G PG GKTT AL +A L+G
Sbjct: 3 KPWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+K LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -NTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQ-GAA 261
+E +N++ + + +S+GD+R+AI LQ GAA
Sbjct: 173 EKESINVEKSGMDAIIYVSEGDMRKAINVLQTGAA 207
>gi|403342743|gb|EJY70695.1| Replication factor C subunit 5 [Oxytricha trifallax]
Length = 324
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 148/232 (63%), Gaps = 9/232 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
P+VEKYRP ++ + +E++ + +ET PH+LF+GPPGTGKT+ +AIA L+G
Sbjct: 6 PFVEKYRPNDLESIISHDEIITTVRRFIETRKMPHLLFHGPPGTGKTSCVIAIAKHLYGK 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK+ +LELNASDDRGINVVR +IK+F + +G K++ILDE DSMT
Sbjct: 66 AEYKNMILELNASDDRGINVVREQIKSFCSTQ--QLMSKG------IKLVILDECDSMTS 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K TRF FICNY+S+II L SRC +FRF PL E + ++ I
Sbjct: 118 SAQFALRRIVEKYTKTTRFCFICNYVSKIIPALQSRCTRFRFGPLQTENILPKLHEIAEL 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
E L LD +A ++ +S GD+R+ + L+ + L IT +++ V+G P+
Sbjct: 178 ENLRLDQDAAESIVKLSGGDMRKVLNVLESCS-LAHKHITLQNVYDVTGRPS 228
>gi|123505671|ref|XP_001329029.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121911979|gb|EAY16806.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 144/235 (61%), Gaps = 9/235 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q+ PWVEKYRP ++ DV E + + ++ PH+ F+GPPGTGKTTTA+AI+HQ
Sbjct: 4 QNVLPWVEKYRPSKLDDVVSHEACISTIKKFIDKNCLPHLCFHGPPGTGKTTTAIAISHQ 63
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+G + S VLELNASD+RGI+ VR +IK FA+ G P K+IILDE+D
Sbjct: 64 LYGNDTSMS-VLELNASDERGIDTVRMRIKDFASSRSLFG--------PKIKLIILDESD 114
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRR ME ++ RF ICNY ++I L SRC +FRF+PL +E + + H
Sbjct: 115 AMTGAAQAALRRIMEQFTSNVRFILICNYPEKLIPALRSRCTEFRFQPLPDEDAAKFLRH 174
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
I + E LN+D L L + GDLRR+I +Q + IT ++ SGYP
Sbjct: 175 IADAEKLNMDEGGLKALLKLGIGDLRRSINLMQTTSMSNTKDITEANVYRCSGYP 229
>gi|399215831|emb|CCF72519.1| unnamed protein product [Babesia microti strain RI]
Length = 347
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 139/239 (58%), Gaps = 9/239 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW EKYRP + + ++++ + + E PH+LF+GPPGTGKT+T LAI+ L+G
Sbjct: 7 PWTEKYRPPDLDSIISHKDIINTIKSFTEVGQIPHLLFHGPPGTGKTSTILAISKHLYG- 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA---VGSGQRRGGYPCPPYKIIILDEADS 166
VLELNASDDRGINVVR KIKTFA V S K+IILDEAD
Sbjct: 66 NYANVYVLELNASDDRGINVVRDKIKTFAEALNRFVPSSDNPANQVKTNLKLIILDEADQ 125
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT +Q ALRR ME Y+K RF ICNY+ +II P+ SRC FRF PL E + R L I
Sbjct: 126 MTNASQGALRRIMEIYAKNVRFCLICNYMHKIISPIQSRCTGFRFSPLDENDLRRRTLEI 185
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-----ITSKDLISVSGYP 280
EG+ L+ LS L I+QGD+R+ + Q AA S I D+++ SG P
Sbjct: 186 ATNEGITLEENGLSALIEIAQGDMRKVLNTFQIAAMSKLDSQDRNIIDVNDILNASGTP 244
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 141/211 (66%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRPK + +V Q+E+V L + ++ PH+LF GP GTGKTT A+A+A +LFG E
Sbjct: 5 WVEKYRPKSLDEVVGQDEIVDRLKSYVKAKTMPHLLFAGPAGTGKTTCAIALARELFG-E 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+++ ELNASD+RGI +VRTKIK +A A + +KII LDEAD++T D
Sbjct: 64 NWRASFHELNASDERGIGIVRTKIKEYARTAAPND--------VGFKIIFLDEADALTPD 115
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME YS+ RF CNY S+IIEP+ SRCA FRF PL E + R+ +I + E
Sbjct: 116 AQAALRRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKSEDIKKRLKYIADSE 175
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
G + +AL+ + IS GD+R+AI LQ +A
Sbjct: 176 GKKITEDALNAIVYISGGDMRKAINILQMSA 206
>gi|448424755|ref|ZP_21582611.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
gi|445681965|gb|ELZ34390.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
Length = 223
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 139/226 (61%), Gaps = 10/226 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EADEQAAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDE+DS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E + V I E + + + L + GD+RRAI LQ AA
Sbjct: 173 DEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAAA 218
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 139/226 (61%), Gaps = 10/226 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
E + A + W+EKYRP+ + D+ QEE+V L + + + PH+LF GP G GK
Sbjct: 3 EADEQAAATATGREIWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGK 62
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT A AIA +++G + ++ LELNASD RGI+VVR +IK FA + G
Sbjct: 63 TTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG----------D 112
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
++I+ LDE+DS+T+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS
Sbjct: 113 FRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLS 172
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E + V I E + + + L + GD+RRAI LQ AA
Sbjct: 173 DEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAAA 218
>gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum]
Length = 387
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 138/212 (65%), Gaps = 3/212 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ E+++ + ++T PH+LFYGPPGTGKT+T LA+A ++G
Sbjct: 44 PWVEKYRPDTLNDVSGHEDILTTINKFVQTNRLPHLLFYGPPGTGKTSTILALARHIYGA 103
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSM 167
+ +VLELNASDDRGI VVR +IKTFA+ G+ + G +K+IILDEAD+M
Sbjct: 104 HNIRQQVLELNASDDRGIEVVREQIKTFASTKQIFGASTKTDG-ELGSFKLIILDEADAM 162
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQNALRR ME Y+ TRF I NY ++ L SRC +FRF PL + + RV H+
Sbjct: 163 TSTAQNALRRIMEKYTANTRFCIIANYTHKLNAALLSRCTRFRFSPLPIDALRRRVDHVI 222
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ E + + A+ L +S+GD+RR++ LQ
Sbjct: 223 DAEKVKITPSAVDALLQLSRGDMRRSLNVLQA 254
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 139/211 (65%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRPK + +V Q+E+V L + ++ + PH+LF GP GTGKTT A+A+A +LFG
Sbjct: 5 WVEKYRPKNLDEVVGQKEIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALARELFGDN 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++S ELNASD+RGI +VRTKIK +A A + +KII LDEAD++T D
Sbjct: 65 -WRSSFHELNASDERGIGIVRTKIKEYARTAAPND--------VGFKIIFLDEADALTPD 115
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME YS+ RF CNY S+IIEP+ SRCA FRF PL E + R+ +I E
Sbjct: 116 AQAALRRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKAEDIKKRLRYIAENE 175
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
G + +AL + IS GD+R+AI LQ +A
Sbjct: 176 GKEITDDALDAIVYISSGDMRKAINILQMSA 206
>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
Length = 329
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 142/211 (67%), Gaps = 9/211 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ + DV Q+ VV + L PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 9 PWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGS 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y++ VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 69 N-YRNMVLELNASDDRGIDVVRNQIKEFAST-------RQIF-SKGFKLIILDEADAMTN 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PLSE+ + R+ ++ +
Sbjct: 120 AAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVK 179
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
E L LD +A + L +S GD+RRA+ LQ A
Sbjct: 180 EHLKLDPQAHAALLRLSSGDMRRALNVLQAA 210
>gi|401429678|ref|XP_003879321.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495571|emb|CBZ30876.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 364
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 154/243 (63%), Gaps = 9/243 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S PWVEKYRP ++ V E+++ L + +++ N PH+L YGPPGTGKTTT A A+ L
Sbjct: 15 SHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYL 74
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--------VGSGQRRGGYPCPPYKI 158
+G + ++ VLE+NASDDRGI+VVR + + FA+ + S GG P +K+
Sbjct: 75 YGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGSGGGGPAAKFKL 134
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEAD M+ DAQ ALRR +E Y++ RF +CN+I++II L SRC +FRF P+ +
Sbjct: 135 VILDEADQMSYDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSA 194
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
M R+ ++ +EG+ + L+ +S+GDLRR + +Q +A L + IT + + V+G
Sbjct: 195 MMPRLRYVAEQEGVKYTTDGLAAAFRLSRGDLRRCLNTMQSSA-LSANEITEESVYRVTG 253
Query: 279 YPT 281
PT
Sbjct: 254 NPT 256
>gi|448611174|ref|ZP_21661808.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445743606|gb|ELZ95087.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 379
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 136/211 (64%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + D+ QEE+V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 69 WIEKYRPQTLDDIYGQEEIVERLCSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 128
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK FA R + Y+II LDEADS+T D
Sbjct: 129 -WRGNFLELNASDQRGIDVVRDRIKNFA---------RSSFGGHDYRIIFLDEADSLTND 178
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ + I E
Sbjct: 179 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAETE 238
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ L + L L + GD+RRAI LQ AA
Sbjct: 239 EIELTEDGLDALVYAAGGDMRRAINSLQAAA 269
>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
Length = 324
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 144/216 (66%), Gaps = 9/216 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+++ W EKYRPK + DV Q+E+V L + ++T + PH+LF GP G GKTT+A+A+A +
Sbjct: 3 ENNTIWTEKYRPKTLDDVVGQKEIVARLKSYVKTGSLPHLLFTGPAGIGKTTSAVALARE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
FG E ++ ELNASD+RGI+VVR +IK FA A G +KI+ LDEAD
Sbjct: 63 FFG-ENWQVNFRELNASDERGIDVVRNQIKQFARTAPMGG--------AEFKILFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T DAQ ALRRTME Y+ RF CNY S+II+P+ SRCA +RF+PL E ++ +
Sbjct: 114 ALTNDAQAALRRTMENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDREAVTEELNR 173
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
I EGL++ +A+S + ++QGD+R+AI LQG A
Sbjct: 174 IAKTEGLSITEDAMSAIIYVAQGDMRKAINALQGGA 209
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 137/211 (64%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIATAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ + + L L + GD+RRAI LQ AA
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAA 217
>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
Length = 341
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 133/219 (60%), Gaps = 3/219 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + D+ EE++ L ++ PH+LFYGPPGTGKT+ L A
Sbjct: 9 KGNMPWVEKYRPATLDDLVSHEEIIATLAKLVKKRRLPHLLFYGPPGTGKTSAILVAARM 68
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
+F P+ S VLELNASDDRGI +VR +I FA G K+IILDEAD
Sbjct: 69 MFTPKQLASMVLELNASDDRGIGIVRDQIMNFAQTKTLHVDENGK---SHIKLIILDEAD 125
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT+DAQNALRR +E +++ RF ICNY+S+II + SRC +FRF PL EE + R+ H
Sbjct: 126 AMTKDAQNALRRVIEKFTENVRFCIICNYLSKIIPAVQSRCTRFRFAPLKEEQILPRLRH 185
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
I E L L + L ++ GD+RR + LQ A F
Sbjct: 186 IAKSESLKLTEDGERALMKLAGGDMRRVLNILQSTAMAF 224
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 142/214 (66%), Gaps = 7/214 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q PWVEKYRP + D+ +++ + N ++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 20 QDLLPWVEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARK 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G + +++ VLELNASD+RGI+VVR +IK+FA+ G + G +K+I+LDEAD
Sbjct: 80 IYGAQ-FRNSVLELNASDERGIDVVREQIKSFASTKSVFGAKAG------FKLIVLDEAD 132
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT+ AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + + SR+ H
Sbjct: 133 AMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLEPDQVESRLQH 192
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ E N+ L +S+GD+RRA+ LQ
Sbjct: 193 VIESEHCNITPGGKEALLKLSRGDMRRALNVLQA 226
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 138/211 (65%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ ++D+ QEE + L + + PH+LF GP G GKT++A AIA +++G +
Sbjct: 16 WIEKYRPQTLEDIHGQEETIERLQSYIAGGELPHLLFSGPAGIGKTSSATAIAREIYGDD 75
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK+FA R + Y+II LDEADS+T D
Sbjct: 76 -WRGNFLELNASDERGIDVVRDRIKSFA---------RSAFGGHDYRIIFLDEADSLTSD 125
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PLS+E +++++ I E
Sbjct: 126 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAIANQLGEIAEIE 185
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ + E L + GD+RR I LQ AA
Sbjct: 186 AIEVTDEGFDALVYAANGDMRRGINSLQAAA 216
>gi|374724905|gb|EHR76985.1| replication factor C small subunit [uncultured marine group II
euryarchaeote]
Length = 328
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 155/237 (65%), Gaps = 14/237 (5%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
+R+ P+ S+ WVE++RP+ V ++ Q +V+ L E PH+LF GPPGTGKTT
Sbjct: 6 RRQEEPM---SELWVERHRPQAVSEIRGQHAIVQRLAVYSEKKEFPHLLFAGPPGTGKTT 62
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
A+A+ +FG E Y+ +LE+NASD+R + +RTK+K FA R Y +K
Sbjct: 63 AAMALTKDVFGEE-YRRNLLEMNASDERKLESIRTKVKQFA--------RTSPYGGAQFK 113
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
II LDEAD++T DAQ ALRR ME Y++ RF CNY S+IIEP+ SRCA FRF+PLS+
Sbjct: 114 IIFLDEADALTNDAQGALRRIMEQYAETCRFILSCNYSSKIIEPIQSRCAVFRFRPLSDA 173
Query: 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
+++++ H+ EG+ L+ +A L+ ISQGDLR+A+T LQ A+ + + ++DLI
Sbjct: 174 DVNAQIHHVAEIEGVKLEDDAGDALTRISQGDLRKALTGLQVASAI--NMHITRDLI 228
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 146/220 (66%), Gaps = 11/220 (5%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + W EKYRP++++DV +++ R L + +++ N PH+LF GPPG GKT A+A+A
Sbjct: 1 MAEDEIWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDE 163
+L+G E + S +ELNASD+RGI+VVR IK FA A +G + +KII LDE
Sbjct: 61 ELYG-ETWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAK---------FKIIFLDE 110
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD++T DAQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF PL+ +++ +
Sbjct: 111 ADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGI 170
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
I EGL ++ + + L +++GD+RRAI LQ AA +
Sbjct: 171 TRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATI 210
>gi|402593971|gb|EJW87898.1| replication factor C 5 [Wuchereria bancrofti]
Length = 347
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 145/234 (61%), Gaps = 6/234 (2%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP + ++ +E++ L + PH+LFYGPPGTGKT+T LA A L+
Sbjct: 14 NMPWVEKYRPASLTELVSHQEIIDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLY 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADS 166
P+ S VLELNASDDRGI +VR +I FA + + + + P K++ILDEAD+
Sbjct: 74 TPKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVP----KLVILDEADA 129
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRR +E ++ RF ICNY+S+II + SRC + RF PLS E + R+ HI
Sbjct: 130 MTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHI 189
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E L + + L ++++GD+RR I LQ A F ++ +++ GYP
Sbjct: 190 VRVESLTVTEDGQKALLNLAEGDMRRVINILQSTAMAF-KTVDERNVYRCLGYP 242
>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
Length = 747
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 145/236 (61%), Gaps = 15/236 (6%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++PWVEKYRP + ++ ++++ VL +E PH L YGPPGTGKT+T LA A ++
Sbjct: 424 ARPWVEKYRPSSLDELVAHKDIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMY 483
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR---GGYPCPPYKIIILDEA 164
G YKS LELNASDDRGI+VVR +IK FA G RR G K+IILDEA
Sbjct: 484 GAG-YKSMTLELNASDDRGIDVVRDQIKEFA------GTRRLFSKGI-----KLIILDEA 531
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D MT+DAQ ALRR +E Y+ RF ICNY ++II L SRC KFRF PL+ + ++ RV
Sbjct: 532 DMMTKDAQFALRRVIEKYTANARFCLICNYANKIIPALQSRCTKFRFAPLAPDQIAGRVA 591
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
I E + + +A L + +GD+RR + LQ AA + +T + L V+G P
Sbjct: 592 DIVRRENVAIGTKATDALLELGKGDMRRVLNVLQAAAVAYPGEVTYESLFLVTGNP 647
>gi|389594993|ref|XP_003722719.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
gi|323363947|emb|CBZ12953.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
Length = 364
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 151/243 (62%), Gaps = 9/243 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S PWVEKYRP ++ V E+++ L + +++ N PH+L YGPPGTGKTTT A A+ L
Sbjct: 15 SHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYL 74
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--------VGSGQRRGGYPCPPYKI 158
+G ++ VLE+NASDDRGI+VVR + + FA+ + S G P +K+
Sbjct: 75 YGKARVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGTGSSTGGGSGGPAAKFKL 134
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEAD M+ DAQ ALRR +E Y++ RF +CN+I++II L SRC +FRF P+ +
Sbjct: 135 VILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSS 194
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
M R+ ++ +EG+ + L+ +S GDLRR + +Q +A L + IT + + V+G
Sbjct: 195 MMPRLRYVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASA-LSANEITEESVYRVTG 253
Query: 279 YPT 281
PT
Sbjct: 254 NPT 256
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 137/211 (64%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ + + L L + GD+RRAI LQ AA
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAA 217
>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
Length = 331
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 152/233 (65%), Gaps = 13/233 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +++++ +++ + ++ PH+LFYGPPGTGKT+T LA+A QL+ P
Sbjct: 11 PWVEKYRPNKLEELISHADILSTIDRFIKEDRLPHLLFYGPPGTGKTSTILAVAKQLYSP 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR + +FA+ SG +KI+ILDEAD+M
Sbjct: 71 KEFNSMVLELNASDDRGIGIVRGPVLSFASTRTIFKSG----------FKIVILDEADAM 120
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR +E +++ TRF ICNY+S+II + SRC +FRF PL + M R+ H+
Sbjct: 121 TNDAQNALRRVIEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLDNQQMVPRLEHVI 180
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+E +++ + ++ L +++ GD+R+++ LQ + + + ++ + G+P
Sbjct: 181 QQERVDVTEDGMNALVTLANGDMRKSLNILQSTSMAY-DVVNEVNVYTCVGHP 232
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 8/237 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
QS WVEKYRP+++ ++ +E+ L + PH+LFYGPPGTGKTT LA A +
Sbjct: 14 QSETIWVEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHLLFYGPPGTGKTTAILACARE 73
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
+FG + +K+ VLELNASDDRGI+VVR +IKTFA+ + G K++ILDEAD
Sbjct: 74 MFGAQ-FKTMVLELNASDDRGIDVVREQIKTFASTRHIYALKAG------IKLVILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQ ALRR ME Y+ RF ICNY ++II + SRC +FRF+P+ M R+ +
Sbjct: 127 AMTSAAQAALRRIMEKYTSNIRFCLICNYANKIIPAIQSRCTRFRFQPVPVAQMIQRLEY 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGYPT 281
I + EG+ +D A L+ I+QGD+RRAI +Q S+ +T + + +G P+
Sbjct: 187 IADREGVPVDRAAFDALARIAQGDMRRAIYLMQSTFLASASARVTEDGVYANAGMPS 243
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 137/211 (64%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ + + L L + GD+RRAI LQ AA
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAA 217
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 137/211 (64%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ + + L L + GD+RRAI LQ AA
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAA 217
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 137/211 (64%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ + + L L + GD+RRAI LQ AA
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAA 217
>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 151/234 (64%), Gaps = 15/234 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ +++ + + PH+LFYGPPGTGKT+T LA+A QL+
Sbjct: 12 PWVEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQLYPD 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
+ + S VLELNASDDRGI +VR I +FA+ SG +K++ILDEAD+M
Sbjct: 72 KQFGSMVLELNASDDRGIGIVRGDILSFASTRTIFKSG----------FKLVILDEADAM 121
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQNALRR ME +++ TRF ICNY+++II L SRC +FRF PLS + M R+ H+
Sbjct: 122 TQDAQNALRRVMEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVI 181
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISV-SGYP 280
E +N+ + +L ++QGD+R+ + LQ + + S+ ++D + + +G P
Sbjct: 182 ESERVNVTDDGRKSLLRLAQGDMRKVLNILQSTSMAY--SVVNEDHVYLCTGQP 233
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 152/232 (65%), Gaps = 9/232 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DVA ++++ + PH+L YGPPGTGKT+T LA+A +L+G
Sbjct: 32 PWVEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYGPPGTGKTSTILAVARKLYGA 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ Y++ +LELNASDDRGI VVR +I+ FA+ ++ G P K++ILDEAD+MT
Sbjct: 92 Q-YQNMILELNASDDRGIEVVRQQIQDFASTKSISFG------PKVNVKLVILDEADAMT 144
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ ALRR +E Y+K TRF ICNY S+II L SRC +FRF PL ++ R+ ++
Sbjct: 145 KDAQFALRRVIEKYTKSTRFCLICNYASKIIPALQSRCTRFRFAPLDPANVTERLRYVIQ 204
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+EGL++ L+ + ++ GDLR+A+ LQ +A++ +T + + +G P
Sbjct: 205 QEGLDVTDGGLAAIVRLANGDLRKALNILQ-SAQMASPHLTEEAVYLCTGNP 255
>gi|146101518|ref|XP_001469135.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|398023497|ref|XP_003864910.1| replication factor C, subunit 3, putative [Leishmania donovani]
gi|134073504|emb|CAM72235.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|322503146|emb|CBZ38230.1| replication factor C, subunit 3, putative [Leishmania donovani]
Length = 364
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 151/243 (62%), Gaps = 9/243 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S PWVEKYRP ++ V E+++ L + +++ N PH+L YGPPGTGKTTT A A+ L
Sbjct: 15 SHLPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYL 74
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--------VGSGQRRGGYPCPPYKI 158
+G + ++ VLE+NASDDRGI+VVR + + FA+ + S G P +K+
Sbjct: 75 YGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPAAKFKL 134
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEAD M+ DAQ ALRR +E Y++ RF +CN+I++II L SRC +FRF P+ +
Sbjct: 135 VILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSA 194
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
M R+ + +EG+ + L+ +S GDLRR + +Q +A L + +T + + V+G
Sbjct: 195 MMPRLRFVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASA-LSANEVTEESVYRVTG 253
Query: 279 YPT 281
PT
Sbjct: 254 NPT 256
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 137/211 (64%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ + + L L + GD+RRAI LQ AA
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAA 217
>gi|344301880|gb|EGW32185.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 323
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 7/236 (2%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + PW+EKYRP+ + D+ Q+E++ + ++T PH+LFYGPPGTGKT+T +A+A
Sbjct: 1 MSDTLPWIEKYRPESLDDIYGQQEIITTVHKFIQTGKLPHLLFYGPPGTGKTSTIIAVAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+++G YK+ VLELNASDDRGI+VVR +IK FA+ R+ +K+IILDEA
Sbjct: 61 EIYGKN-YKNMVLELNASDDRGIDVVRNQIKNFAST------RQIFNQGNSFKLIILDEA 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT AQN+LRR +E ++K RF + NY ++ L SRC +FRF P+ E + R+
Sbjct: 114 DAMTNAAQNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDTEAIRERIK 173
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ +E +++DA+A+ L +S+GD+RRA+ LQ SI + G P
Sbjct: 174 VVITKEQVDIDAKAVDALVQLSKGDMRRALNVLQACKAATAGSIDLDMIYECIGAP 229
>gi|66513962|ref|XP_623937.1| PREDICTED: replication factor C subunit 2 [Apis mellifera]
Length = 350
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 149/251 (59%), Gaps = 9/251 (3%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S VK K PW+EKYRP+ D+ E+ V L+ + NCP+++ G
Sbjct: 17 PSTSGYNVKNKEKDKKLDHLPWIEKYRPQVFSDIVGNEDTVSRLSVFAQQGNCPNIIIAG 76
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP ++K VLELNAS+DRGI+VVR KIK FA Q+R
Sbjct: 77 PPGVGKTTTILCLARILLGP-IFKEAVLELNASNDRGIDVVRNKIKMFA-------QKRV 128
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KIIILDEADSMT AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 129 NLPKGKHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNSSDKIIEPIQSRCAML 188
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
R+ LS+ + ++++ IC +E ++ + L + +QGD+R+A+ LQ F + +
Sbjct: 189 RYGKLSDAQILAKIIDICKKEDVSHTDDGLEAIVFTAQGDMRQALNNLQSTHNGF-NHVN 247
Query: 270 SKDLISVSGYP 280
S+++ V P
Sbjct: 248 SENVFKVCDEP 258
>gi|407408177|gb|EKF31712.1| replication factor C, subunit 3, putative [Trypanosoma cruzi
marinkellei]
Length = 355
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 147/239 (61%), Gaps = 2/239 (0%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
V S+ PWVEKYRP + +V E+++ +++ N PH+LFYGPPGTGKTTT A A
Sbjct: 13 VKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACA 72
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILD 162
+ LFG + ++ VLE+NASDDRGI+VVR +++ FA+ + +K++ILD
Sbjct: 73 YYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAASTIAAFKLVILD 132
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD M+ DAQ ALRR +E Y+K RF +CN+I++II L SRC +FRF P+ + M R
Sbjct: 133 EADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKNAMLPR 192
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
+ + EEG+ L +S GDLRR + +Q +A G IT + + V+G PT
Sbjct: 193 LKFVAQEEGVRFTDGGLVAAFRLSNGDLRRCLNTMQASAMSAG-EITEESVYRVTGNPT 250
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 137/211 (64%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ DV Q+++V L + +E + PH+LF GP G GKTT+A AIA ++G +
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y++I LDEADS+T D
Sbjct: 77 -WRGNFLELNASDERGIDVVRDRIKNFA---------RSSFGGHDYRVIFLDEADSLTND 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL ++ ++ +V I E
Sbjct: 127 AQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAE 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ + + L L + GD+RRAI LQ AA
Sbjct: 187 DIEVTEDGLDALVYAAGGDMRRAINSLQAAA 217
>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
gi|158512813|sp|A2SQT3.1|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
Length = 321
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 154/232 (66%), Gaps = 12/232 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S + W+EKYRPK + +V Q++VV L + + T PH+LF G G GKTT A+A+A ++
Sbjct: 4 SPEIWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREM 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEAD 165
FG + + ELNASD+RGI+VVR +IK FA A +G +KI+ LDEAD
Sbjct: 64 FG-DTWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDA---------TFKILFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T+DAQ ALRRTME Y++ RF CNY S+II+P+ SRCA +RF+PL++E +S +
Sbjct: 114 ALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIAR 173
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
I +EG+ +D A ++ +S GD+R+AI LQGAA + +T++++ +++
Sbjct: 174 IAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAA-IVSDHVTAENIYAIT 224
>gi|367055770|ref|XP_003658263.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
gi|347005529|gb|AEO71927.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 141/218 (64%), Gaps = 6/218 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVSLSDVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + + VLELNASDDRGI VVR IKTFA+ GS R G +K+IIL
Sbjct: 100 IYGHQNMRQMVLELNASDDRGIEVVREHIKTFASTKQIFTAGSSASRAGIAG--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ +
Sbjct: 158 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLHEQDIRV 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EEG+ + +A+ +L +S+GD+RRA+ LQ
Sbjct: 218 LVDKVIEEEGVKIMPDAVDSLVRLSKGDMRRALNVLQA 255
>gi|302851817|ref|XP_002957431.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
gi|300257235|gb|EFJ41486.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
Length = 335
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 144/231 (62%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ + ++ E V L E N P+++ GPPGTGKTT+ L +AHQL GP
Sbjct: 20 PWLEKYRPQYIHEIVGNMEAVARLQVIAEEGNMPNVILAGPPGTGKTTSILCLAHQLLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 80 T-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTA 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ +S+ + SR+ +C +
Sbjct: 132 GAQQALRRTMEIYSNTTRFALACNQSSKIIEPIQSRCAIVRYSRISDVDILSRLRLVCEK 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EG+ + E + L + GD+R+A+ LQ FG I+ +++ V P
Sbjct: 192 EGVTYNDEGMEALIFTADGDMRQALNNLQATHSGFG-FISQENVFKVCDQP 241
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DVA +++ + PH+L YGPPGTGKT+T LA+A +L+G
Sbjct: 41 PWVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 100
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y + +LELNASDDRGI+VVR +I+ FA+ S + K+++LDEAD+MT+
Sbjct: 101 Q-YHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASV-----KLVLLDEADAMTK 154
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR +E Y+K TRF ICN++++II L SRC +FRF PL + R+ H+
Sbjct: 155 DAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPMHVGERLKHVIEA 214
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EGL++ L L +S GD+R+A+ LQ + + IT + + +G P
Sbjct: 215 EGLDVPESGLEALKCLSNGDMRKALNILQ-STHMASQQITEETVYLCTGNP 264
>gi|340505649|gb|EGR31962.1| replication factor c subunit, putative [Ichthyophthirius
multifiliis]
Length = 359
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 132/210 (62%), Gaps = 8/210 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFG 108
PWVEKYRP +KD+ E +V +T + N P++LFYGPPGTGKT+T +AIA QL+G
Sbjct: 20 PWVEKYRPDTLKDLISHEFIVMTITKFINEQNKLPNLLFYGPPGTGKTSTIVAIAKQLYG 79
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
YK VLELNASDDRGINVVR +IKTFA A S +G K+IILDEAD MT
Sbjct: 80 NS-YKQMVLELNASDDRGINVVRDQIKTFAGTANFSAAGKGT------KLIILDEADQMT 132
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRR +E YS RF ICNY+S+II L SRC +F+FK + E R+ IC
Sbjct: 133 NQAQFALRRIIEKYSNNARFCLICNYVSKIIPALQSRCTRFKFKHIPIEDAQKRIEEICL 192
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + D L + + GD+RR + LQ
Sbjct: 193 IEKIKYDQSGLEAIFKLCDGDMRRVVNMLQ 222
>gi|310831184|ref|YP_003969827.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
gi|309386368|gb|ADO67228.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
Length = 314
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 138/209 (66%), Gaps = 7/209 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ ++ HQ E + V+ N ++ N PH++FYGPPGTGKT+T LA+ +++F E
Sbjct: 7 WNEKYRPKKLNEIIHQNETILVIKNLIDNHNLPHLIFYGPPGTGKTSTILAVCNEIFPDE 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY-KIIILDEADSMTE 169
+ +R E NAS+DRGI +R KIK S Q+ YP P+ KIIILDE D++T
Sbjct: 67 IKYNRCFEFNASNDRGIKFIREKIKKI------SNQKIKNYPNTPHIKIIILDEVDTLTT 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
D+Q ALRR ME S TRF ICNY +++IEP+ SRCA+FRFKP+ ++M ++ I +
Sbjct: 121 DSQYALRRIMENSSSNTRFCLICNYPNKLIEPIISRCAQFRFKPIPTKIMEEKLTDILKQ 180
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + + + + S GDLR +I+YLQ
Sbjct: 181 EKIKNKKDITNLIIENSYGDLRLSISYLQ 209
>gi|237843503|ref|XP_002371049.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|211968713|gb|EEB03909.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|221484795|gb|EEE23089.1| activator 1 36 kDa, putative [Toxoplasma gondii GT1]
gi|221504971|gb|EEE30636.1| activator 1 36 kDa, putative [Toxoplasma gondii VEG]
Length = 398
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 150/257 (58%), Gaps = 29/257 (11%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFY 88
+PEK+ ++ A + PWVEKYRP+++ DV ++++R + N + PH+LF+
Sbjct: 18 APEKASSQLPSAHA---DRALPWVEKYRPERLSDVLAHDDIIRTIRNYVHKGQLPHLLFH 74
Query: 89 GPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS---- 144
GPPGTGKT+T LA+A + +G + ++ VLELNASDDRGIN VR +IKTFA + S
Sbjct: 75 GPPGTGKTSTILAVAKEFYGSAV-RTHVLELNASDDRGINTVREQIKTFAETSSTSFQQN 133
Query: 145 ---------------------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183
GQ + G P K+IILDEAD MT AQNALRR ME Y+
Sbjct: 134 RLIFGKSAVPATEAAEATSSHGQEKKGQGGPSLKLIILDEADQMTNAAQNALRRIMEAYA 193
Query: 184 KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLS 243
+ RF ICN++++I + SRC FRF P+S + ++ I +E + L + L L
Sbjct: 194 RNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 253
Query: 244 SISQGDLRRAITYLQGA 260
I++GD+RR + +Q +
Sbjct: 254 KIARGDMRRLLNCMQAS 270
>gi|380013855|ref|XP_003690961.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 2-like
[Apis florea]
Length = 351
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 144/231 (62%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ D+ E+ V L+ + NCP+++ GPPG GKTTT L +A L GP
Sbjct: 38 PWIEKYRPQIFSDIVGNEDTVSRLSVFAQQGNCPNIIIAGPPGVGKTTTILCLARILLGP 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++K VLELNAS+DRGI+VVR KIK FA Q+R P +KIIILDEADSMT
Sbjct: 98 -IFKEAVLELNASNDRGIDVVRNKIKMFA-------QKRVNLPKGKHKIIILDEADSMTS 149
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ LS+ + ++++ IC +
Sbjct: 150 GAQQALRRTMEIYSNTTRFALACNSSDKIIEPIQSRCAMLRYGKLSDAQILAKIIDICKK 209
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E ++ + L + +QGD+R+A+ LQ F + + S+++ V P
Sbjct: 210 EDVSHTDDGLEAIVFTAQGDMRQALNNLQSTHNGF-NHVNSENVFKVCDEP 259
>gi|225459599|ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
gi|302141794|emb|CBI18997.3| unnamed protein product [Vitis vinifera]
Length = 360
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 151/238 (63%), Gaps = 7/238 (2%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + + PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+
Sbjct: 31 PPDRKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAV 90
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+G E + + +LELNASDDRGI+VVR +I+ FA+ S + K+++LD
Sbjct: 91 ARKLYG-EQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSV-----KLVLLD 144
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQ ALRR +E Y+K TRF ICN++++II L SRC +FRF PL ++ R
Sbjct: 145 EADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTER 204
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ H+ N E L++ L+ L +S GD+R+A+ LQ + + IT + + +G P
Sbjct: 205 LKHVINAEKLDVSESGLAALVRLSSGDMRKALNILQ-STHMASQQITEEAVYLCTGNP 261
>gi|408397619|gb|EKJ76759.1| hypothetical protein FPSE_02945 [Fusarium pseudograminearum CS3096]
Length = 390
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 139/218 (63%), Gaps = 5/218 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +E PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ ++G G R G +K+IIL
Sbjct: 99 IYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLG-GASRSGNAMAGFKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRV 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EE + + EA+ L +S+GD+RRA+ LQ
Sbjct: 218 LVDKVVEEENVQVKGEAIDALVKLSKGDMRRALNVLQA 255
>gi|164659418|ref|XP_001730833.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
gi|159104731|gb|EDP43619.1| hypothetical protein MGL_1832 [Malassezia globosa CBS 7966]
Length = 371
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 134/209 (64%), Gaps = 8/209 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ ++DV V L E NCPH+L G PG GKTT+ +AH L G
Sbjct: 16 PWVEKYRPRYLRDVVGNSATVERLRAIEEHGNCPHLLLSGLPGIGKTTSVHCLAHALLG- 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASDDRGI+VVR+KIK FA Q++ P +KII+LDEADSMT
Sbjct: 75 DAYKEAVLELNASDDRGIDVVRSKIKAFA-------QKKVSLPPGRHKIIVLDEADSMTP 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME Y+ TRF F CN ++IIEP+ SRCA RF +S+E + R+L IC
Sbjct: 128 GAQQALRRTMEIYAPTTRFCFACNQSNKIIEPIQSRCAILRFGRISDEELLRRLLQICEA 187
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + E L+ + ++GD+R+A+ LQ
Sbjct: 188 EHVKYSDEGLAAVVFTAEGDMRQAVNNLQ 216
>gi|367013632|ref|XP_003681316.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
gi|359748976|emb|CCE92105.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
Length = 322
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 140/230 (60%), Gaps = 10/230 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P L PWVEKYRP+++KD+ EE V L + N PHM+ G PG GKTT+ +
Sbjct: 5 PQLTLQLPWVEKYRPEKLKDIVGNEETVERLEQIAKDGNMPHMIISGLPGIGKTTSVHCL 64
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILD
Sbjct: 65 AHELLGKS-YSQAVLELNASDDRGIDVVRNQIKHFA-------QKKCHLPPGKHKIIILD 116
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R
Sbjct: 117 EADSMTAGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKR 176
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
++ I E ++ + L + ++GD+R+AI LQ + G + S D
Sbjct: 177 LMEIIKAENVSFTNDGLEAIIFTAEGDMRQAINNLQST--VAGHGLVSGD 224
>gi|154344961|ref|XP_001568422.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065759|emb|CAM43533.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 364
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 150/246 (60%), Gaps = 9/246 (3%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
V S PWVEKYRP ++ V E+++ L + + + N PH+L YGPPGTGKTTT A A
Sbjct: 12 VAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMNSGNMPHLLLYGPPGTGKTTTIKACA 71
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--------VGSGQRRGGYPCPP 155
+ L+G + ++ VLE+NASDDRGI+VVR + + FA+ S G
Sbjct: 72 YYLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTTSIFSVMGSSSSTGSGSGGSAVK 131
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+K++ILDEAD M+ DAQ ALRR +E Y++ RF +CN+I++II L SRC +FRF P+
Sbjct: 132 FKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCLLCNHINKIIPALQSRCTRFRFAPVK 191
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ M R+ ++ EG+ + L+ +SQGDLRR + +Q +A L + IT + +
Sbjct: 192 KSAMMPRLRYVAEHEGVKYTTDGLAAAYRLSQGDLRRCLNTMQASA-LSANEITEESVYR 250
Query: 276 VSGYPT 281
V+G PT
Sbjct: 251 VTGNPT 256
>gi|429863915|gb|ELA38322.1| replication factor c subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 389
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 140/218 (64%), Gaps = 6/218 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPVNLNDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI+VVR +IKTFA+ +G + GG YK+IIL
Sbjct: 99 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPAAKAGGMAS--YKLIIL 156
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 157 DEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRV 216
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EE + + +EA L +S+GD+RRA+ LQ
Sbjct: 217 LVDKVIEEEHVKIMSEATEALVKLSKGDMRRALNVLQA 254
>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
12940]
gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 151/229 (65%), Gaps = 11/229 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ ++D+A E +V L + + + HMLF GP G GKTT A AIA +L+G
Sbjct: 13 EVWIEKYRPQTLEDIAGHEAIVERLGSYVSRNDLSHMLFAGPAGVGKTTAATAIARELYG 72
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD+RGI+VVR ++K+FA + G GY Y+II LDEAD++T
Sbjct: 73 -EDWEENFLELNASDERGIDVVRDRVKSFARTSFG------GYD---YRIIFLDEADALT 122
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL++E + +++ I
Sbjct: 123 ADAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADEAVEAQIRQIAQ 182
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
EE +++ + + L ++ GD+R+AI LQ AA + G ++ + + ++
Sbjct: 183 EEVIDVTEDGIEALVYVAGGDMRKAINGLQ-AASMSGDTVNEEAVFEIT 230
>gi|393240465|gb|EJD47991.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 348
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 148/231 (64%), Gaps = 10/231 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV + + + N +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 31 PWVEKYRPVALSDVVSHDGITTTIENFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGN 90
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK ++LELNASDDRGI+VVR +IK FA + RR +K+IILDEAD MT+
Sbjct: 91 D-YKRQILELNASDDRGIDVVREQIKQFAETR--TLFRRS------FKLIILDEADMMTQ 141
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRR +E Y+K RF ICNY+++I + SRC +FRF PL + + RV H+
Sbjct: 142 AAQSALRRIIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIQDVERRVRHVIEA 201
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + ++ + L L +S+GD+RRA+ LQ + + T ++ + +G P
Sbjct: 202 EDVKIEPDGLDALLKLSKGDMRRALNILQACHAAYDRT-TETEIYNCTGSP 251
>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe 972h-]
gi|13431787|sp|O14003.2|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3
gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe]
Length = 342
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 143/215 (66%), Gaps = 9/215 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP ++DV ++++ L + + PHMLFYGPPGTGKT+T LA A +
Sbjct: 20 ESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARK 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP Y+++++ELNASDDRGI+ VR +IK FA+ R + +K+IILDEAD
Sbjct: 80 IYGPN-YRNQLMELNASDDRGIDAVREQIKNFAST-------RQIFA-STFKMIILDEAD 130
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQNALRR +E Y+K RF ICNYI++I + SRC +FRF+PL + + V H
Sbjct: 131 AMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDH 190
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
+ E N+D +A + +S+GD+R+A+ LQ
Sbjct: 191 VIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQAC 225
>gi|291407082|ref|XP_002719834.1| PREDICTED: replication factor C 5 [Oryctolagus cuniculus]
Length = 342
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 151/229 (65%), Gaps = 9/229 (3%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP+ + D+ +++ + + PH+L YGPPGTGKT+T LA A QL+ +
Sbjct: 25 VEKYRPQTLNDLISHRDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 84
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
+ S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+DA
Sbjct: 85 FGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQDA 136
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
QNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ EE
Sbjct: 137 QNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEK 196
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ + + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 197 VYVSEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 244
>gi|403160320|ref|XP_003320851.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169507|gb|EFP76432.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 141/226 (62%), Gaps = 13/226 (5%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + PWVEKYRP + DV +++++ + + PH+LFYGPPGTGKT+T LA+
Sbjct: 23 PASKEHLPWVEKYRPSTLDDVVSHQDIIQTIQKFISANQLPHLLFYGPPGTGKTSTILAV 82
Query: 103 AHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAA--VAVGSGQRRGGYPCPPYKII 159
A QLF P +K+ +LELNASDDRGI+VVR +IK FA+ + SG +K+I
Sbjct: 83 ARQLFQTPMSFKNNILELNASDDRGIDVVREQIKNFASARMVFSSG----------FKLI 132
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD MT+ AQ+ALRR +E Y+K RF ICNY++RI + SRC +FRF PL +
Sbjct: 133 ILDEADQMTQAAQSALRRVIEQYTKNVRFCIICNYVNRINPAIQSRCTRFRFGPLDHPEI 192
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
R+ H+ + E + + + L ++ +GD+RR + +Q +G
Sbjct: 193 ERRIAHVADAESVKISDDGRKALLNLCKGDMRRVLNVMQACHSGYG 238
>gi|297842523|ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
gi|297334984|gb|EFH65402.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 148/231 (64%), Gaps = 8/231 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP + PWVEKYRP+ + DVA +++ + PH+L YGPPGTGKT+T LA
Sbjct: 32 APPQSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILA 91
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+A +L+GP+ Y++ +LELNASDDRGI+VVR +I+ FA+ S + K+++L
Sbjct: 92 VARKLYGPK-YRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSS------VKLVLL 144
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT+DAQ ALRR +E Y+K TRF I N++++II L SRC +FRF PL +S
Sbjct: 145 DEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDPLHVSQ 204
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
R+ H+ EGL + L+ L +S GD+R+A+ LQ + + IT K+
Sbjct: 205 RLKHVIEAEGLGVSDCGLAALVRLSNGDMRKALNILQ-STHMASKEITEKE 254
>gi|383858073|ref|XP_003704527.1| PREDICTED: replication factor C subunit 2-like [Megachile
rotundata]
Length = 351
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 148/243 (60%), Gaps = 9/243 (3%)
Query: 38 KRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTT 97
K+K + + PW+EKYRP+ D+ E+ V L+ + NCP+++ GPPG GKTT
Sbjct: 25 KKKQKDLKTAHLPWIEKYRPQVFSDIVGNEDTVSRLSVFAKNGNCPNIIIAGPPGVGKTT 84
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
T L +A L GP +K VLELNAS+DRGI+VVR KIK FA Q+R +K
Sbjct: 85 TILCLARILLGPA-FKEAVLELNASNDRGIDVVRNKIKMFA-------QKRVNLDKGKHK 136
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
IIILDEADSMT+ AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ L++
Sbjct: 137 IIILDEADSMTDGAQQALRRTMEIYSNTTRFALACNNSEKIIEPIQSRCAMLRYGKLTDA 196
Query: 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+ +++L +C +E ++ + L + +QGD+R+A+ LQ FG + S+++ V
Sbjct: 197 QVLAKILEVCQKENVSYTDDGLEAIVFTAQGDMRQALNNLQSTYNGFG-HVNSENVFKVC 255
Query: 278 GYP 280
P
Sbjct: 256 DEP 258
>gi|452819401|gb|EME26461.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 330
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 144/232 (62%), Gaps = 10/232 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRPK DV Q++++ + + + + PHMLFYGPPGTGKT+T LA A ++G
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+KS VLELNASDDRGI+VVR +IK F S QR K++ILDEAD+MT
Sbjct: 70 -FKSMVLELNASDDRGIDVVRNEIKDFC-----STQRIFA---TGVKLVILDEADAMTSA 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF ICNY ++II L SRC +FRF PL EE + R+ I E
Sbjct: 121 AQMALRRIMEKYTSSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAERE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTG 282
G+ + +AL T+ +SQGD+R I LQ + L +T + +G P+
Sbjct: 181 GVVFEKDALETIIQLSQGDMRSCINILQ-STFLSSGKVTCSTVYENTGNPSN 231
>gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40]
gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874706|gb|EIT83551.1| replication factor C, subunit RFC5 [Aspergillus oryzae 3.042]
Length = 398
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 141/218 (64%), Gaps = 4/218 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + ++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 QDNLPWVEKYRPNTLDDVSGHQDILATINRFVDANRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + + VLELNASDDRGI+VVR +IKTFA+ ++ GG YK+IIL
Sbjct: 100 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPQPTSGGSSLASYKLIIL 159
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ + S
Sbjct: 160 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRS 219
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + +E + + EA+ +L +S+GD+RRA+ LQ
Sbjct: 220 LVDLVIEKEEVKIQPEAVDSLVKLSKGDMRRALNVLQA 257
>gi|388582885|gb|EIM23188.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 134/209 (64%), Gaps = 7/209 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++ V+ L + N PHM+ G PG GKTT LA+AH L GP
Sbjct: 10 PWVEKYRPRVLSDIVGNQDTVKRLEVIAQDGNMPHMIMSGTPGIGKTTAVLALAHTLLGP 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+++K VLELNASD+RGI+VVR +IK+FA Q++ P +KI+ILDEADSMT
Sbjct: 70 DVFKEAVLELNASDERGIDVVRNRIKSFA-------QKKIALPPGRHKIVILDEADSMTS 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA RF L + + R+ I +
Sbjct: 123 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPIQSRCAILRFSKLRDIELLQRLRQIAEK 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E ++ E L S+GD+R+A+ LQ
Sbjct: 183 ENADVTDEGYEALIFTSEGDMRQAVNNLQ 211
>gi|46123299|ref|XP_386203.1| hypothetical protein FG06027.1 [Gibberella zeae PH-1]
Length = 390
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 139/218 (63%), Gaps = 5/218 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +E PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ ++G G R G +K+IIL
Sbjct: 99 IYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLG-GASRSGNGMAGFKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRV 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EE + + EA+ L +S+GD+RRA+ LQ
Sbjct: 218 LVDKVVEEENVQVKGEAIDALVKLSKGDMRRALNVLQA 255
>gi|406605842|emb|CCH42728.1| Replication factor C subunit 4 [Wickerhamomyces ciferrii]
Length = 324
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 139/225 (61%), Gaps = 8/225 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L+ PWVEKYRP +++DV EE + L + N PH++ G PG GKTT+
Sbjct: 1 MSNALKLELPWVEKYRPSKLEDVTGNEETISRLKLISQDGNMPHLIISGLPGIGKTTSIH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G + Y + VLELNASDDRGI+VVR KIK FA Q++ P +KIII
Sbjct: 61 CLAHELLG-DAYSNAVLELNASDDRGIDVVRNKIKQFA-------QKKVSLPQGRHKIII 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E +
Sbjct: 113 LDEADSMTPGAQQALRRTMEIYSNTTRFAFACNVSNKIIEPLQSRCAILRYTKLSDEEVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
R+L I E + + L L ++GD+R+AI LQ FG
Sbjct: 173 KRLLDIIKFEKVEYSNDGLEALIFTAEGDMRQAINNLQSTVAGFG 217
>gi|426201141|gb|EKV51064.1| hypothetical protein AGABI2DRAFT_189375 [Agaricus bisporus var.
bisporus H97]
Length = 341
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 135/216 (62%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 21 PWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTTSIHCLAHQLLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVRTKIK FA Q++ P +KI+ILDEADSMT
Sbjct: 80 DAYKEGVLELNASDERGIEVVRTKIKQFA-------QKKVTLPPGRHKIVILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC E
Sbjct: 133 GAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + + L+ L S+GD+R+AI LQ FG
Sbjct: 193 EDVKYNDDGLTALIFTSEGDMRQAINNLQSTFSGFG 228
>gi|452824858|gb|EME31858.1| replication factor C subunit [Galdieria sulphuraria]
Length = 330
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 144/232 (62%), Gaps = 10/232 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRPK DV Q++++ + + + + PHMLFYGPPGTGKT+T LA A ++G
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+KS VLELNASDDRGI+VVR +IK F S QR K++ILDEAD+MT
Sbjct: 70 -FKSMVLELNASDDRGIDVVRNEIKDFC-----STQRIFA---TGVKLVILDEADAMTSA 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF ICNY ++II L SRC +FRF PL EE + R+ I E
Sbjct: 121 AQMALRRIMEKYTTSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAERE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTG 282
G+ + +AL T+ +SQGD+R I LQ + L +T + +G P+
Sbjct: 181 GVVFEKDALETIIQLSQGDMRSCINILQ-STFLSSGKVTCSTVYENTGNPSN 231
>gi|448664377|ref|ZP_21684180.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
gi|445775022|gb|EMA26036.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
Length = 325
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 138/213 (64%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 ED-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + +I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EEG+ L + L L + GD+R+AI LQ A+
Sbjct: 184 EEGIELTEDGLDALVYAADGDMRKAINGLQAAS 216
>gi|350401447|ref|XP_003486155.1| PREDICTED: replication factor C subunit 2-like [Bombus impatiens]
Length = 351
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 152/254 (59%), Gaps = 9/254 (3%)
Query: 27 QSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHML 86
++ P S +K K ++ PW+EKYRP+ D+ E+ V L+ E NCP+++
Sbjct: 14 EAVPSTSGYNIKNKEKDKKSANLPWIEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNII 73
Query: 87 FYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146
GPPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK FA Q
Sbjct: 74 IAGPPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMFA-------Q 125
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+R +KIIILDEADSMT+ AQ ALRRTME YS TRF CN +IIEP+ SRC
Sbjct: 126 KRVNLAKGKHKIIILDEADSMTDGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRC 185
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
A R+ LS+ + ++++ +C +E ++ + L + +QGD+R+A+ LQ FG
Sbjct: 186 AMLRYGKLSDAQILAKIIEVCQKEDVSHTDDGLEAIVFTAQGDMRQALNNLQSTYNGFG- 244
Query: 267 SITSKDLISVSGYP 280
+ S+++ V P
Sbjct: 245 HVNSENVFKVCDEP 258
>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|42559322|sp|O26343.1|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=MthRFC small subunit
gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 321
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/228 (46%), Positives = 145/228 (63%), Gaps = 13/228 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ D+ QE ++ L +E + P+++F GP G GKTT ALA+A ++ G
Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILG- 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD RGI+ VRT IK F + VG+ P++II LDE D+MT
Sbjct: 66 EYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGA----------PFRIIFLDEVDNMT 115
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRR ME Y+K + F CNY S+II+P+ SRCA FRF PL + R+ +I
Sbjct: 116 KDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAE 175
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISV 276
+E L +A AL T+ ++GDLR+AI LQ AA L G IT + V
Sbjct: 176 KENLEYEAHALETIVYFAEGDLRKAINLLQSAASL-GEKITESSIYDV 222
>gi|340729148|ref|XP_003402870.1| PREDICTED: replication factor C subunit 2-like [Bombus terrestris]
Length = 351
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 151/251 (60%), Gaps = 9/251 (3%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S +K K S+ PW+EKYRP+ D+ E+ V L+ E NCP+++ G
Sbjct: 17 PSTSGYNIKNKEKDKKSSNLPWIEKYRPQIFSDIVGNEDTVSRLSVFAEHGNCPNIIIAG 76
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP ++K VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 77 PPGVGKTTTILCLARILLGP-VFKEAVLELNASNERGIDVVRNKIKMFA-------QKKV 128
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
+KIIILDEADSMT+ AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 129 NLAKGKHKIIILDEADSMTDGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAML 188
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
R+ LS+ + ++++ +C +E ++ + L + +QGD+R+A+ LQ FG +
Sbjct: 189 RYGKLSDAQILAKIIEVCQKEDVSHTDDGLEAIVFTAQGDMRQALNNLQSTYNGFG-HVN 247
Query: 270 SKDLISVSGYP 280
S+++ V P
Sbjct: 248 SENVFKVCDEP 258
>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
Length = 324
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 147/236 (62%), Gaps = 9/236 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ SQPWVEKYRP+ + DV V+ L N P+++ GPPG GKTT+ LA+ H
Sbjct: 1 MSQSQPWVEKYRPRVLDDVVGNTAVIERLRALAAEGNIPNLILTGPPGCGKTTSLLALCH 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
QL G + K V+ELNASDDRGI+VVR IK FA +R P +K+++LDE+
Sbjct: 61 QLLGDK-EKDAVIELNASDDRGIDVVRKNIKEFA-------KRHVALPEGRHKVVLLDES 112
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT+ AQ A+RR ME Y+K TRF F CN ++IEP+ SRCA RF + E +++R++
Sbjct: 113 DSMTDAAQQAMRRIMENYTKTTRFVFACNQSEKVIEPIQSRCAIVRFSRVEENEIAARLM 172
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
IC EG ++E ++TL+ ++ GD+R AI LQ +G +T +++++ P
Sbjct: 173 KICELEGFKPESEGIATLARLADGDMRTAINGLQSTYVRYG-LVTQENVLATVDIP 227
>gi|363750179|ref|XP_003645307.1| hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888940|gb|AET38490.1| Hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
Length = 319
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 133/216 (61%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ +KD+ EE+V L N PHM+ G PG GKTT+ IAH+L G
Sbjct: 10 PWVEKYRPQLLKDIVGNEEIVERLQQIAYDGNMPHMIISGLPGIGKTTSIHCIAHELLGD 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 70 S-YSQAVLELNASDDRGIDVVRNQIKQFA-------QKKCTLPPGKHKIIILDEADSMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R+L I
Sbjct: 122 GAQQALRRTMEIYSSSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKL 181
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + L + ++GD+R+AI LQ FG
Sbjct: 182 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGFG 217
>gi|255558636|ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540562|gb|EEF42129.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 360
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 148/231 (64%), Gaps = 7/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+G
Sbjct: 38 PWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGV 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y + +LELNASDDRGI+VVR +I+ FA+ S + K+++LDEAD+MT+
Sbjct: 98 Q-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFDAKSAV-----KLVLLDEADAMTK 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR +E Y+K TRF ICN++++II L SRC +FRF PL ++ R+ H+
Sbjct: 152 DAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEA 211
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EGL++ L+ + +S GD+R+A+ LQ + + IT + + +G P
Sbjct: 212 EGLDVPEPGLAAVVRLSNGDMRKALNILQ-STHMASQQITEEAVHLCTGNP 261
>gi|408403343|ref|YP_006861326.1| replication factor C small subunit [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363939|gb|AFU57669.1| replication factor C small subunit [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 328
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 152/228 (66%), Gaps = 7/228 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ +V +Q+E+++ ++N +++ + PHMLF GP G GKTTTAL IA +L G E
Sbjct: 13 WSEKYRPKKLAEVVNQKEIIKGISNMIKSPDIPHMLFSGPAGVGKTTTALCIAMELLGEE 72
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K LELNASD+RGI +VR ++K FAA +G + G P KIIILDEAD MT +
Sbjct: 73 -WKKNTLELNASDERGIKMVRERVKEFAASIKLAGDKEFGTP----KIIILDEADEMTSE 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR +E ++ TRF ICNY+S+IIEP+ SRC FRF L E + + IC +E
Sbjct: 128 AQTALRRIIEDSARTTRFIIICNYLSQIIEPIQSRCVVFRFTRLPREDVIDYLKMICEKE 187
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+ + +AL+ + + GD+R +I +Q AA + S++S ++I+ G
Sbjct: 188 KVKFEEKALAQIYDATGGDMRHSINIMQAAAGM--GSVSSANVIAAMG 233
>gi|409083800|gb|EKM84157.1| hypothetical protein AGABI1DRAFT_110722 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 341
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 135/216 (62%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 21 PWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLPGIGKTTSIHCLAHQLLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI VVRTKIK FA Q++ P +KI+ILDEADSMT
Sbjct: 80 DAYKEGVLELNASDERGIEVVRTKIKQFA-------QKKVTLPPGRHKIVILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC E
Sbjct: 133 GAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + + L+ L S+GD+R+AI LQ FG
Sbjct: 193 EDVKYNDDGLTALIFTSEGDMRQAINNLQSTFSGFG 228
>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 373
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 137/210 (65%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+L YGPPGTGKT+T LA+A +L+GP
Sbjct: 55 PWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGP 114
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASDDRGI+VVR +IK FA V + +K++ILDEAD MT+
Sbjct: 115 A-YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSK--------GFKLVILDEADMMTQ 165
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRR +E ++K RF +CNY+++I + SRC +FRF PL E+ + +V + +
Sbjct: 166 AAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQK 225
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EG+NL + L +S+GD+RRA+ LQ
Sbjct: 226 EGVNLTDDGRDALLKLSRGDMRRALNVLQA 255
>gi|19114033|ref|NP_593121.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913230|sp|O94449.1|RFC4_SCHPO RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4
gi|4106657|emb|CAA22597.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe]
Length = 342
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 144/232 (62%), Gaps = 9/232 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L + N PH++ G PG GKTT+ L +AH L GP
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 82 A-YKEGVLELNASDERGIDVVRNRIKAFA-------QKKVILPPGRHKIIILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L+++ + R+L+IC
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKA 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
E +N + L+ L ++GD+R+A+ LQ FG + +++ V+ P+
Sbjct: 194 EKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFG-LVNGENVFRVADQPS 244
>gi|190345167|gb|EDK37005.2| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 134/216 (62%), Gaps = 7/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE V L + N PHM+ G PG GKTT+ +A++L G
Sbjct: 11 PWVEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYELLGK 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+Y LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 71 TMYDQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRHKIIILDEADSMTP 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ L+++ + SR+L I
Sbjct: 124 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLSRLLEIAKA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + +++ L L ++GD+R+AI +Q FG
Sbjct: 184 EDVKYNSQGLQALIFTAEGDMRQAINNMQSTVAGFG 219
>gi|367036204|ref|XP_003667384.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
gi|347014657|gb|AEO62139.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
Length = 389
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 142/218 (65%), Gaps = 6/218 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+LFYGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPATLADVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI+VVR +IKTFA+ ++ + R G +K+IIL
Sbjct: 100 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMSASATRSGI--ANFKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ +
Sbjct: 158 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRG 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ + EE + + EA +L +S+GD+RRA+ LQ
Sbjct: 218 LIDKVIEEENVKIMPEATDSLVRLSKGDMRRALNVLQA 255
>gi|428167624|gb|EKX36580.1| replication factor C subunit 4 [Guillardia theta CCMP2712]
Length = 350
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 151/249 (60%), Gaps = 18/249 (7%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
+ PV+ PW+EKYRP+ + DV ++++ L LE PH+L YGPPGTGKT+T L
Sbjct: 14 IDPVVALECPWIEKYRPETLNDVVAHKDILTTLDRFLEQDRLPHLLLYGPPGTGKTSTVL 73
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ-----RRGGYPCPP 155
A+A ++FGP+ YKS LELNASDDRGI+VV+ +IK FA G R G
Sbjct: 74 ALAKKVFGPK-YKSMTLELNASDDRGIDVVKKEIKDFAGTRTIFGLIVLLCRTG------ 126
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+K+IILDEAD+MT+ AQ ALRR +E Y+ RF ICNY+++II L SRC +FRF PL+
Sbjct: 127 FKMIILDEADNMTQTAQFALRRIIENYTANARFCLICNYVNKIIPALQSRCTRFRFSPLT 186
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ + I ++E + +AL + IS GD+R+ + LQ SS+ SK++
Sbjct: 187 SADIQGNLERILDKENIKATPDALKAVEKISGGDMRKCLNILQ------SSSMASKEVTV 240
Query: 276 VSGYPTGGS 284
S Y G
Sbjct: 241 ESIYECTGD 249
>gi|115449001|ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|46805779|dbj|BAD17147.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|46806135|dbj|BAD17365.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|215697717|dbj|BAG91711.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191668|gb|EEC74095.1| hypothetical protein OsI_09136 [Oryza sativa Indica Group]
Length = 361
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 152/236 (64%), Gaps = 13/236 (5%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+
Sbjct: 37 AAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY 96
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILDEA 164
G + Y + +LELNASD+RGI+VVR +I+ FA+ ++ G+ Q K+++LDEA
Sbjct: 97 GSQ-YGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQ--------SVKMVLLDEA 147
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT+DAQ ALRR +E +++ TRF ICN++++II L SRC +FRF PL + R+
Sbjct: 148 DAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLK 207
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
HI EGL++D L+ L +S GD+R+A+ LQ + + IT + + +G P
Sbjct: 208 HIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQ-STHMASKQITEEAVYLCTGNP 262
>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
Length = 354
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 146/237 (61%), Gaps = 14/237 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
SS PWVEKYRP ++ D+ + +V + +E PH+LFYGPPGTGKT+ +AIA ++
Sbjct: 30 SSWPWVEKYRPSRMDDIIAHKGIVSTINQLVEKQKLPHLLFYGPPGTGKTSMIIAIARKI 89
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEA 164
+G + S VLELNASDDRGI+VVR +IK FA SG K+IILDEA
Sbjct: 90 YGKH-FSSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSSGA----------KLIILDEA 138
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ +LRR +E Y+K TRF ICNY+S+II L SRC +FRF PL + RV
Sbjct: 139 DSMTNDAQFSLRRVIEKYTKHTRFCLICNYVSKIIPALQSRCMRFRFAPLGVTQVGDRVK 198
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
I + E ++L L + +GD+RR + LQ AA L +++ +++ +G P
Sbjct: 199 QIRDLEKIDLTDGGFDALMQLGKGDMRRILNILQ-AASLAYATVNEENVYLCTGNPV 254
>gi|405123808|gb|AFR98571.1| DNA replication factor [Cryptococcus neoformans var. grubii H99]
Length = 373
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 137/210 (65%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+L YGPPGTGKT+T LA+A +L+GP
Sbjct: 55 PWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGP 114
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASDDRGI+VVR +IK FA V + +K++ILDEAD MT+
Sbjct: 115 A-YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSK--------GFKLVILDEADMMTQ 165
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRR +E ++K RF +CNY+++I + SRC +FRF PL E+ + +V + +
Sbjct: 166 AAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQK 225
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EG+NL + L +S+GD+RRA+ LQ
Sbjct: 226 EGVNLTDDGRDALLKLSRGDMRRALNVLQA 255
>gi|308198335|ref|XP_001386998.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|149388978|gb|EAZ62975.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 325
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 142/229 (62%), Gaps = 9/229 (3%)
Query: 37 VKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKT 96
+KR P L+ PWVEKYRP+++ DV EE + L + N PHM+ G PG GKT
Sbjct: 1 MKRTDEPKLEL--PWVEKYRPRRLDDVVGNEETIERLKLIAKDGNMPHMIISGLPGIGKT 58
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156
T+ +A++L G + Y+ LELNASDDRGI+VVR +IK FA Q + P +
Sbjct: 59 TSIHCLAYELLGDDYYQQATLELNASDDRGIDVVRNRIKQFA-------QTKIKLPPGRH 111
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216
KIIILDEADSMT AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ L++
Sbjct: 112 KIIILDEADSMTPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLAD 171
Query: 217 EVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+ + +R+L + E + ++E L L ++GD+R+AI LQ FG
Sbjct: 172 DQVLTRLLEVSAAENVKFNSEGLQALIFTAEGDMRQAINNLQSTVAGFG 220
>gi|10798790|dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
Length = 367
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 151/234 (64%), Gaps = 13/234 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+G
Sbjct: 39 PWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS 98
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILDEADS 166
+ Y + +LELNASD+RGI+VVR +I+ FA+ ++ G+ Q K+++LDEAD+
Sbjct: 99 Q-YGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQ--------SVKMVLLDEADA 149
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ ALRR +E +++ TRF ICN++++II L SRC +FRF PL + R+ HI
Sbjct: 150 MTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHI 209
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EGL++D L+ L +S GD+R+A+ LQ + + IT + + +G P
Sbjct: 210 IQSEGLDVDDGGLTALVRLSNGDMRKALNILQ-STHMASKQITEEAVYLCTGNP 262
>gi|401403730|ref|XP_003881552.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
gi|325115965|emb|CBZ51519.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
Length = 403
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/283 (37%), Positives = 158/283 (55%), Gaps = 34/283 (12%)
Query: 25 TTQSSPEKSE--DEVKRKMAP--VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
T SP +E + K+ P + + + PWVEKYRP+++ DV ++++R + + +E
Sbjct: 8 TNSDSPRSAEASERPASKLPPHGLSERALPWVEKYRPERLDDVLAHDDIIRTIRHYVEKG 67
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA-- 138
PH+LF+GPPGTGKT+T LA+A + +G + ++ VLELNASDDRGIN VR +IKTFA
Sbjct: 68 QLPHLLFHGPPGTGKTSTILAVAKEFYGSAV-RTHVLELNASDDRGINTVREQIKTFAET 126
Query: 139 ---------------------------AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
A ++ Q + G P K+IILDEAD MT A
Sbjct: 127 SSTSFHGQGRLMFGKPAAPTASAEKEEASSLAQSQEKRGGAGPSLKLIILDEADQMTNAA 186
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
QNALRR ME Y++ RF ICN+I++I + SRC FRF P+S + + I EE
Sbjct: 187 QNALRRIMEAYARNVRFCLICNFINKITPAIQSRCTGFRFTPVSSLSLKQKAAQIAEEET 246
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
+ L + L L I++GD+RR + +Q + + + D++
Sbjct: 247 MKLSDDGLDALVKIARGDMRRLLNCMQASHLAHPGEVVNADIV 289
>gi|391342410|ref|XP_003745513.1| PREDICTED: replication factor C subunit 5-like [Metaseiulus
occidentalis]
Length = 327
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 136/215 (63%), Gaps = 8/215 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + D+ E+++ + + PH+LFYGPPGTGKT+T LA A QL+ P
Sbjct: 9 PWVEKYRPKTLDDLIAHEDIISTIDRFVTQDRFPHLLFYGPPGTGKTSTILATARQLYEP 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI +VR +I FA+ ++ +K+IILDEAD+MT
Sbjct: 69 KEFSSMVLELNASDDRGIGIVRGEILNFASTRTIFNKK--------FKLIILDEADAMTH 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E Y+ RF ICNY+S+II PL SRC +FRF PLS M R+ +
Sbjct: 121 DAQNALRRVIEKYADNARFCIICNYLSKIIPPLQSRCTRFRFGPLSVSQMVPRIEMVIKT 180
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
E + + + +++GD+R+++ LQ + F
Sbjct: 181 EDVPITPAGKQAIVDLAEGDMRKSLNILQASYMAF 215
>gi|169626367|ref|XP_001806584.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
gi|111055048|gb|EAT76168.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
Length = 393
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 154/258 (59%), Gaps = 24/258 (9%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDV 63
+FG K GK + N P ++ED S PWVEKYRP + DV
Sbjct: 20 SFGGDQKKGKRSAANL----------PVEAED------------SLPWVEKYRPTSLDDV 57
Query: 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123
++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VLELNASD
Sbjct: 58 EGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASD 117
Query: 124 DRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181
DRGI+VVR +IKTF++ + + G +K+IILDEAD+MT AQ ALRR ME
Sbjct: 118 DRGIDVVREQIKTFSSTKQIFSAAPKAGDSALATFKLIILDEADAMTATAQMALRRIMEK 177
Query: 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241
Y+ TRF I NY ++ L SRC +FRF PL ++ + + V + +E +N+ +A S+
Sbjct: 178 YTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEDEKVNITQDAASS 237
Query: 242 LSSISQGDLRRAITYLQG 259
L ++S+GD+RRA+ LQ
Sbjct: 238 LVTLSKGDMRRALNVLQA 255
>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
Length = 338
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 145/223 (65%), Gaps = 11/223 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P Q + PWVEKYRPK + DV ++++ L + T PHMLFYGPPGTGKT+T LA
Sbjct: 14 PETQDTLPWVEKYRPKNLDDVVAHKDIIATLEKFISTNRVPHMLFYGPPGTGKTSTILAC 73
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIIL 161
A++++GP ++++V+ELNASDDRGI+VVR +IK+FA+ + S +K+IIL
Sbjct: 74 ANRIYGPN-FRNQVMELNASDDRGIDVVREQIKSFASTKQIFSS---------AFKLIIL 123
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DE D+MT AQNALRR +E Y++ RF ICNYI++I + SRC +FRF+PL +
Sbjct: 124 DETDAMTLAAQNALRRVIEKYTRNVRFCIICNYINKIAPAIQSRCTRFRFQPLPITEIEK 183
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
+V + +E + E + L +S+GD+R+A+ LQ ++
Sbjct: 184 KVDEVAEKENCTISPEGKTALLRLSKGDMRKALNILQACHAVY 226
>gi|189189278|ref|XP_001930978.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972584|gb|EDU40083.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 393
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 153/258 (59%), Gaps = 24/258 (9%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDV 63
+FG K GK + N P ++ED S PWVEKYRP + DV
Sbjct: 20 SFGGDQKKGKRSAANL----------PVEAED------------SLPWVEKYRPNSLDDV 57
Query: 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123
++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VLELNASD
Sbjct: 58 EGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASD 117
Query: 124 DRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181
DRGI+VVR +IKTF++ + R G +K+IILDEAD+MT AQ ALRR ME
Sbjct: 118 DRGIDVVREQIKTFSSTKQIFAAAPRAGDSSLATFKLIILDEADAMTATAQMALRRIMEK 177
Query: 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241
Y+ TRF I NY ++ L SRC +FRF PL ++ + + V + +E +N+ +A +
Sbjct: 178 YTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEDEKVNITQDATGS 237
Query: 242 LSSISQGDLRRAITYLQG 259
L ++S+GD+RRA+ LQ
Sbjct: 238 LVTLSKGDMRRALNVLQA 255
>gi|330922359|ref|XP_003299806.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
gi|311326367|gb|EFQ92093.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
Length = 393
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 153/258 (59%), Gaps = 24/258 (9%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDV 63
+FG K GK + N P ++ED S PWVEKYRP + DV
Sbjct: 20 SFGGDQKKGKRSAANL----------PVEAED------------SLPWVEKYRPNSLDDV 57
Query: 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123
++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VLELNASD
Sbjct: 58 EGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASD 117
Query: 124 DRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181
DRGI+VVR +IKTF++ S + G +K+IILDEAD+MT AQ ALRR ME
Sbjct: 118 DRGIDVVREQIKTFSSTKQIFASAPKTGDSSLATFKLIILDEADAMTATAQMALRRIMEK 177
Query: 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241
Y+ TRF I NY ++ L SRC +FRF PL ++ + + V + +E +N+ +A +
Sbjct: 178 YTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEDEKVNITQDATGS 237
Query: 242 LSSISQGDLRRAITYLQG 259
L ++S+GD+RRA+ LQ
Sbjct: 238 LVTLSKGDMRRALNVLQA 255
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 137/210 (65%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +L+G
Sbjct: 55 PWVEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLLFYGPPGTGKTSTVLALARRLYG- 113
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK +LELNASDDRGI+VVR +IK FA V + +K++ILDEAD MT+
Sbjct: 114 SAYKKHILELNASDDRGIDVVREQIKNFAMTKVLFSK--------GFKLVILDEADMMTQ 165
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRR +E ++K RF +CNY+++I + SRC +FRF PL E+ + +V + +
Sbjct: 166 AAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQK 225
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EG+NL + L +S+GD+RRA+ LQ
Sbjct: 226 EGVNLTEDGRDALLKLSRGDMRRALNVLQA 255
>gi|366988087|ref|XP_003673810.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
gi|342299673|emb|CCC67429.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
Length = 321
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 133/215 (61%), Gaps = 8/215 (3%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+L PWVEKYRP+ + D+ EE + L + N PHM+ G PG GKTT+ L +A
Sbjct: 5 ILTLELPWVEKYRPRVLDDIVGNEETILRLKQIAQDGNMPHMIISGLPGIGKTTSVLCLA 64
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
H+L G + Y VLELNASDDRGI VVR +IK FA Q++ P +KIIILDE
Sbjct: 65 HELLGDD-YSKAVLELNASDDRGIEVVRNQIKQFA-------QKKSLLPPGKHKIIILDE 116
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
ADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R+
Sbjct: 117 ADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRL 176
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
L I E + + L + ++GD+R+AI LQ
Sbjct: 177 LQIIKAEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 211
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 147/237 (62%), Gaps = 15/237 (6%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ S W EKYRPK + +V QE++VR L + ++T N PH+LF GPPG GKT A+A+A
Sbjct: 11 MASDDVWTEKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPHLLFSGPPGVGKTACAVALAK 70
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+FG + +++ ELNASD+RGI+VVR IK FA A R +KII LDEA
Sbjct: 71 DMFG-DTWQNNFTELNASDERGIDVVRNNIKNFARTAPLGDAR--------FKIIFLDEA 121
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF PL + + +
Sbjct: 122 DALTSDAQSALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAVYRFGPLGPKDIETMAR 181
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
I EG+ + + L + +++GD+RRA+ LQ A S SKD+ + + Y T
Sbjct: 182 RIEKGEGIKITKDGLDAIIYVARGDMRRAVNALQSA------STVSKDITAEAVYET 232
>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
AAA [uncultured archaeon MedDCM-OCT-S05-C724]
Length = 321
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 144/213 (67%), Gaps = 9/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
Q W+EKYRP + +V QE V L N ++ ++ PH+LF GP G GKTT+ALA+A ++FG
Sbjct: 3 QIWIEKYRPNNLSEVVGQEAVTTRLKNYVKESSMPHLLFAGPAGIGKTTSALALAREMFG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
EL++ + ELNASD+RGI+VVR KIK FA A G++ +KII LDEAD++T
Sbjct: 63 -ELWQHNLHELNASDERGIDVVRGKIKEFARTA-PLGEK-------GFKIIFLDEADALT 113
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRRTME YS+ RF CNY S+II+P+ SRCA FRF+P+ E + + + +
Sbjct: 114 GAAQAALRRTMEKYSRTCRFVMSCNYSSKIIDPIQSRCAVFRFRPIKAEDLEKYLKFVAS 173
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E + + EA +L+ ++QGDLRRAI LQ AA
Sbjct: 174 KENVKVTKEAFESLTYLAQGDLRRAINGLQMAA 206
>gi|448730730|ref|ZP_21713035.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
gi|445793171|gb|EMA43761.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 143/219 (65%), Gaps = 10/219 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ W+EKYRP+ + DV E +V L + + + PH+LF GP G GKTT+++AIA +++
Sbjct: 12 DEIWIEKYRPETLADVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSSMAIAREVY 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + ++ LELNASD+RGI+VVR +IK FA + G GY Y+II LDEAD++
Sbjct: 72 GDD-WRENFLELNASDERGIDVVRDRIKDFARTSFG------GYD---YRIIFLDEADAL 121
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME ++ TRF CNY S+II+P+ SRCA FRF PL+EE + + +
Sbjct: 122 TSDAQSALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYIRRVA 181
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
EG+ + + + L + GD+R+A+ LQ AA + G+
Sbjct: 182 ENEGIEVTDDGVDALVYAADGDMRKALNGLQAAATMEGA 220
>gi|393218168|gb|EJD03656.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 338
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 134/216 (62%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV E + L NCPH++ G PG GKTT+ +AHQ+ G
Sbjct: 18 PWVEKYRPQTLDDVVGNSETIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQMLG- 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 77 EAYKDGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPPGRHKIVILDEADSMTS 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC
Sbjct: 130 GAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEM 189
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + + L+ L S+GD+R+AI LQ FG
Sbjct: 190 EQVQYNDDGLTALIFTSEGDMRQAINNLQSTHSGFG 225
>gi|410077369|ref|XP_003956266.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
gi|372462850|emb|CCF57131.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
Length = 321
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 133/216 (61%), Gaps = 8/216 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P L PWVEKYRP+ +KD+ EE + L + N PHM+ G PG GKTT+ +
Sbjct: 4 PSLTLELPWVEKYRPQLLKDIVGNEETIERLKQIAQDGNMPHMIISGLPGIGKTTSVHCL 63
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
AH+L G Y VLELNASDDRGI+V+R +IK FA Q++ P +KIIILD
Sbjct: 64 AHELLGSH-YSQAVLELNASDDRGIDVIRNQIKHFA-------QKKLNLPVGKHKIIILD 115
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R
Sbjct: 116 EADSMTAGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKR 175
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+L + E + + L + ++GD+R+AI LQ
Sbjct: 176 LLEVIELEKVEYTNDGLEAIIFTAEGDMRQAINNLQ 211
>gi|307170254|gb|EFN62614.1| Replication factor C subunit 5 [Camponotus floridanus]
Length = 329
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 148/235 (62%), Gaps = 9/235 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+++ PWVEKYRPK + ++ E ++R + ++ PH+L YGPPGTGKT+T LA A +
Sbjct: 9 RANLPWVEKYRPKSLDELISHETIIRTINKFIDENQLPHLLLYGPPGTGKTSTILACARK 68
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+ P + S VLELNASDDRGI +VR +I +FA+ G +K+IILDEAD
Sbjct: 69 LYTPTQFNSMVLELNASDDRGIGIVRGQILSFAST--------GTMYKSAFKLIILDEAD 120
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PL+ E + R+ +
Sbjct: 121 AMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNY 180
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ E L + + L ++S GD+R+ ++ LQ +G + +++ + G+P
Sbjct: 181 VIEAENLKVTEDGKEALMTLSGGDMRKVLSVLQSTWFAYG-IVNQENVYNCVGHP 234
>gi|380489807|emb|CCF36452.1| replication factor C [Colletotrichum higginsianum]
Length = 392
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 140/219 (63%), Gaps = 5/219 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVG-SGQRRGGYPCPPYKIII 160
++G E + VLELNASDDRGI+VVR +IKTFA+ +G S + GG YK+II
Sbjct: 99 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPSAKSGGGGSMASYKLII 158
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 159 LDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIR 218
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EE + + EA L +S+GD+RRA+ LQ
Sbjct: 219 VLVDKVVEEEHVKILPEATDALVKLSKGDMRRALNVLQA 257
>gi|448726685|ref|ZP_21709077.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
gi|445793731|gb|EMA44302.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
Length = 326
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 140/211 (66%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP + +VA Q+++ L + + + PH+LF GP G GKTT+A+AIA +++G +
Sbjct: 14 WIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA + G GY Y++I LDEAD++T D
Sbjct: 74 -WRDNFLELNASDERGIDVVRDRIKNFARTSFG------GYD---YRVIFLDEADALTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME ++ TRF CNY ++II+P+ SRCA FRF PL E ++ V I EE
Sbjct: 124 AQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVEQIAGEE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
G+ + + + L + GD+R+AI LQ AA
Sbjct: 184 GIEITDDGVDALVYAADGDMRKAINGLQAAA 214
>gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator]
Length = 329
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 148/246 (60%), Gaps = 13/246 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + ++ E +++ + ++ PH+L YGPPGTGKT+T LA A +L+ P
Sbjct: 12 PWVEKYRPKNLDELISHETIIKTINKFIDENQLPHLLLYGPPGTGKTSTILACARKLYTP 71
Query: 110 ELYKSRV-LELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ S V LELNASDDRGI +VR +I +FA+ G +K+IILDEAD+MT
Sbjct: 72 AQFNSMVVLELNASDDRGIGIVRGQILSFAST--------GTMYKSAFKLIILDEADAMT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQNALRR +E Y+ RF ICNY+S+II L SRC +FRF PL+ E + R+ H+
Sbjct: 124 IDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIE 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGGSGGAF 288
E LN+ + L ++S GD+R+ I+ LQ +G + ++ + G+P
Sbjct: 184 AENLNVTEDGKQALMTLSGGDMRKVISVLQSTWFAYG-IVNEGNVYNCVGHPLPSD---I 239
Query: 289 RGVQKW 294
R + W
Sbjct: 240 RNIVNW 245
>gi|402223757|gb|EJU03821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 356
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 138/210 (65%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 40 PWVEKYRPATLDDVVSHKDITSTIEKFIEQNRLPHLLFYGPPGTGKTSTILAVARKIYGN 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y+ ++LELNASDDRGI+VVR +IK FA + R Y +K+I+LDEAD MT+
Sbjct: 100 E-YRKQILELNASDDRGIDVVREQIKNFA-------EMRTLY-SKGFKLIVLDEADMMTQ 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRR +E Y++ RF ICNY+++II + SRC +FRF PL + + R+ +
Sbjct: 151 AAQSALRRVIEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPQTEIEKRIKQVVEA 210
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
E +NL + L +S+GD+RRA+ LQ
Sbjct: 211 EHVNLTEDGKQALLKLSKGDMRRALNILQA 240
>gi|241959612|ref|XP_002422525.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223645870|emb|CAX40533.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 323
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 134/215 (62%), Gaps = 7/215 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK+++D+ EE V L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 10 PWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMILSGLPGIGKTTSIHCLAYELLGE 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y +ELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 70 EYYHQATMELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRQKIIILDEADSMTP 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ LS+E + +R+L I
Sbjct: 123 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKM 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
E + + E L L ++GD+R+AI LQ F
Sbjct: 183 EDVQYNTEGLQALVFTAEGDMRQAINNLQSTVAGF 217
>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
IC-167]
Length = 318
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 102/207 (49%), Positives = 140/207 (67%), Gaps = 9/207 (4%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
+E++RP ++ D+ QE V L + + PH+LFYGPPG GKTT ALA+A +L+G +
Sbjct: 1 MERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYG-DS 59
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
++S VLELNASD+RGI+V+R K+K FA + +G P P +K++ILDEAD+MT DA
Sbjct: 60 WRSSVLELNASDERGIDVIREKVKEFAR-TIPTG------PVP-FKLVILDEADNMTSDA 111
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
Q ALRR ME Y+ TRF + NYIS IIEP+ SRCA FRF PL +E + R+ I E G
Sbjct: 112 QQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETG 171
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQ 258
+ + + L + +SQGD+R+AI LQ
Sbjct: 172 VEVTEDGLEAIWEVSQGDMRKAINTLQ 198
>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 137/210 (65%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+L YGPPGTGKT+T LA+A +L+GP
Sbjct: 55 PWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGP 114
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ +LELNASDDRGI+VVR +IK FA V + +K++ILDEAD MT+
Sbjct: 115 A-YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSK--------GFKLVILDEADMMTQ 165
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRR +E ++K RF +CNY+++I + SRC +FRF PL E+ + +V + +
Sbjct: 166 AAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQK 225
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EG+NL + + +S+GD+RRA+ LQ
Sbjct: 226 EGVNLTDDGRDAILKLSRGDMRRALNVLQA 255
>gi|303281602|ref|XP_003060093.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458748|gb|EEH56045.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 332
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 137/209 (65%), Gaps = 9/209 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP ++ DVA ++++ + + PH+L YGPPGTGKT+T LA+A +L+GP
Sbjct: 2 WVEKYRPSRLADVAAHKDIIDTIGRLTKEDKLPHLLLYGPPGTGKTSTILAVAKELYGPA 61
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ LELNASDDRGI+VVR +I++FA S R + +K+IILDE DSMT+D
Sbjct: 62 -FAQMTLELNASDDRGIDVVRNEIQSFA-----STMR---FNATGFKLIILDECDSMTKD 112
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR +E Y+K TRF I NY+S+II L SRC +FRF PL E + RV H+ E
Sbjct: 113 AQFALRRVIEKYTKHTRFCLIGNYVSKIIPALQSRCTRFRFAPLGPESVRERVKHVVASE 172
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQG 259
G+ + E L+ + ++ GD+RR + LQ
Sbjct: 173 GVEITEEGLAAVQTLGAGDMRRTLNILQA 201
>gi|405964852|gb|EKC30294.1| Replication factor C subunit 2 [Crassostrea gigas]
Length = 344
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 144/232 (62%), Gaps = 9/232 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRP ++ D+ EE + L N P+++ GPPGTGKTT+ L +A + G
Sbjct: 25 QPWVEKYRPVKLHDIVGNEETISRLEVFGRDGNVPNVIIAGPPGTGKTTSILCLARAMLG 84
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
P Y+ VLE+NAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 85 PS-YRDAVLEMNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMT 136
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+ AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + R+L +C
Sbjct: 137 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDAQVLKRLLEVCE 196
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E ++ + L + +QGD+R+A+ LQ + FG + S+++ V P
Sbjct: 197 AEAVSYTDDGLEAIVFTAQGDMRQALNNLQSTFQGFG-HVNSENVFKVCDEP 247
>gi|453083984|gb|EMF12029.1| replication factor C subunit 3 [Mycosphaerella populorum SO2202]
Length = 399
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 142/219 (64%), Gaps = 5/219 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 44 EDTLPWVEKYRPNALADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARR 103
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGS--GQRRGGYPCPPYKIII 160
++G + + VLELNASDDRGI+VVR +IKTF++ + GS RR YK+II
Sbjct: 104 IYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKTRRDDSSIAHYKLII 163
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL + +
Sbjct: 164 LDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIR 223
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ + EE +N++ A +L ++S+GD+RRA+ LQ
Sbjct: 224 QLIDRVITEENVNIEPTAADSLVTLSKGDMRRALNVLQA 262
>gi|68473223|ref|XP_719417.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|46441233|gb|EAL00532.1| hypothetical protein CaO19.7658 [Candida albicans SC5314]
gi|238880430|gb|EEQ44068.1| activator 1 37 kDa subunit [Candida albicans WO-1]
Length = 323
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 135/216 (62%), Gaps = 7/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK+++D+ EE V L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 10 PWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGD 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y +ELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 70 EHYHQATMELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRQKIIILDEADSMTP 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRT+E YS TRF F CN S+IIEPL SRCA R+ LS+E + +R+L I
Sbjct: 123 GAQQALRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKM 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + E L L ++GD+R+AI LQ FG
Sbjct: 183 EDVKYNTEGLQALIFTAEGDMRQAINNLQSTVAGFG 218
>gi|146423599|ref|XP_001487726.1| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 134/216 (62%), Gaps = 7/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ EE V L + N PHM+ G PG GKTT+ +A++L G
Sbjct: 11 PWVEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYELLGK 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+Y LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 71 TMYDQATLELNASDDRGIDVVRNKIKQFA-------QTKILLPPGRHKIIILDEADSMTP 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ L+++ + SR+L I
Sbjct: 124 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLSRLLEIAKA 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + +++ L L ++GD+R+AI +Q FG
Sbjct: 184 EDVKYNSQGLQALIFTAEGDMRQAINNMQSTVAGFG 219
>gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 333
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 135/210 (64%), Gaps = 8/210 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ ++VV L + N P+++F GPPGTGKTT+ LA+AH+L GP
Sbjct: 17 PWVEKYRPHRVADIVGNQDVVARLQVIAQGGNMPNLIFSGPPGTGKTTSILALAHELLGP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNASDDRGI+VVR KIK FA Q++ P +K+++LDEADSMT
Sbjct: 77 N-FKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVLLDEADSMTA 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS+ + R+L +
Sbjct: 129 GAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLSDSEILDRLLRVVEA 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
E + E L + + GD+R+A+ LQ
Sbjct: 189 EKVPYVPEGLEAVVFTADGDMRQALNNLQA 218
>gi|170084297|ref|XP_001873372.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650924|gb|EDR15164.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 341
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 134/216 (62%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 21 PWVEKYRPTVLDDVVGNSDTIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQLLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASDDRGI+VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 80 DAYKEGVLELNASDDRGIDVVRNKIKTFA-------QKKVTLPPGRHKIIILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC
Sbjct: 133 GAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEM 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + + L+ L S+GD+R+AI LQ FG
Sbjct: 193 EKVEYNDDGLTALIFTSEGDMRQAINNLQSTYSGFG 228
>gi|389745640|gb|EIM86821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 135/210 (64%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 38 PWVEKYRPNSLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGA 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK + LELNASDDRGI+VVR +IK FA + R + YK+IILDEAD MT
Sbjct: 98 G-YKKQTLELNASDDRGIDVVREQIKQFA-------ETRTLF-SKGYKLIILDEADMMTT 148
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++I+ + SRC +FRF PL + + RV H+
Sbjct: 149 AAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPMKEVEKRVDHVVAA 208
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EG+ L + L +S+GD+RRA+ LQ
Sbjct: 209 EGVKLTEDGKKALLKLSKGDMRRALNILQA 238
>gi|448737973|ref|ZP_21720004.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
gi|445802557|gb|EMA52861.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
Length = 326
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 140/211 (66%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP + +VA Q+++ L + + + PH+LF GP G GKTT+A+AIA +++G +
Sbjct: 14 WIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA + G GY Y++I LDEAD++T D
Sbjct: 74 -WRENFLELNASDERGIDVVRDRIKNFARTSFG------GYD---YRVIFLDEADALTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME ++ TRF CNY ++II+P+ SRCA FRF PL E ++ V I EE
Sbjct: 124 AQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVERIAGEE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
G+ + + + L + GD+R+AI LQ AA
Sbjct: 184 GIEITDDGVDALVYAADGDMRKAINGLQAAA 214
>gi|452840856|gb|EME42793.1| hypothetical protein DOTSEDRAFT_80413 [Dothistroma septosporum
NZE10]
Length = 401
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 152/239 (63%), Gaps = 8/239 (3%)
Query: 29 SPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
S ++ + KR A PV L+ + PWVEKYRP + DV+ +++ + ++T PH+
Sbjct: 25 SSNNTDSKGKRSAANLPVELEDNLPWVEKYRPNSLSDVSGHHDILATINKFVDTNRLPHL 84
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAV 142
L YGPPGTGKT+TALA+A +++G + + VLELNASDDRGI+VVR +IKTF++ +
Sbjct: 85 LLYGPPGTGKTSTALAMARRIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFA 144
Query: 143 GSGQRRGGY--PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
GS + +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY ++
Sbjct: 145 GSFDKSNNQNDTIAHFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSP 204
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
L SRC +FRF PL + + V + +EE +N+ EA +L ++S+GD+RRA+ LQ
Sbjct: 205 ALLSRCTRFRFSPLKDADIRQLVDKVISEEVVNIAPEAADSLVTLSKGDMRRALNVLQA 263
>gi|366997707|ref|XP_003683590.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
gi|357521885|emb|CCE61156.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
Length = 325
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 137/223 (61%), Gaps = 10/223 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ E+ + L + + N PHM+ G PG GKTT+ +AH+L G
Sbjct: 11 PWVEKYRPHLLKDIVGNEDTIERLKHIAKDGNMPHMIISGLPGIGKTTSIHCLAHELLGD 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 71 S-YSQAVLELNASDDRGIDVVRNQIKHFA-------QKKCHLPTGKHKIIILDEADSMTA 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R+L I
Sbjct: 123 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLEITKA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
E + + L L ++GD+R+AI LQ + G S+ + D
Sbjct: 183 EDVKYTNDGLEALIFTAEGDMRQAINNLQST--VAGHSLVNGD 223
>gi|262401171|gb|ACY66488.1| replication factor C 2 (40kD) isoform 2 [Scylla paramamosain]
Length = 332
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 154/257 (59%), Gaps = 10/257 (3%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
S + P K E K K +P S PW+EKYRP D+ EE V L + N P
Sbjct: 6 SEMEVDPPK-ESRNKDKASPSETSHAPWIEKYRPTTFPDIVGNEETVARLEVFAKQGNVP 64
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
+++ GP G GKTTT L +A L GP ++ V+ELNAS+DRGI+VVR KIK FA
Sbjct: 65 NIIIAGPLGVGKTTTILCLARALLGPS-FREAVMELNASNDRGIDVVRNKIKMFA----- 118
Query: 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
Q++ P +KIIILDEADSMT+ AQ ALRRTME YS TRF CN +IIEP+
Sbjct: 119 --QQKVTLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSNTTRFALACNSSEKIIEPIQ 176
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
SRCA R+ L++ + +++ H+C++E L+ + L + +QGD+R+A+ LQ A+
Sbjct: 177 SRCAMLRYSKLTDAQILNKLQHVCSKEDLSYTDDGLEAILFTAQGDMRQALNNLQSTAQG 236
Query: 264 FGSSITSKDLISVSGYP 280
FG ++S+++ V P
Sbjct: 237 FG-HVSSENVFKVCDEP 252
>gi|328855833|gb|EGG04957.1| hypothetical protein MELLADRAFT_72257 [Melampsora larici-populina
98AG31]
Length = 349
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 147/245 (60%), Gaps = 18/245 (7%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQ--PWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
ST+ ++P KS K +SS+ PWVEKYRP + D+ E + L N
Sbjct: 4 STSTAAPAKSNGTSSGKK----KSSEDIPWVEKYRPIILDDITGNVETIERLKVIARDGN 59
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
CPH++ G PG GKTT+ L +AH L G + YK VLELNASD+RGI+VVR KIKTFA
Sbjct: 60 CPHIIISGAPGIGKTTSILCLAHALLG-DSYKEGVLELNASDERGIDVVRNKIKTFANTK 118
Query: 142 VGSGQRRGGYPCPP--YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
V PP +KIIILDEADSMT AQ ALRRTME Y+ TRF CN+ S+II
Sbjct: 119 V---------TLPPGRHKIIILDEADSMTSGAQQALRRTMEIYANSTRFALACNFSSKII 169
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EP+ SRCA R+ LS++ + R++ IC+ E + E L+ + ++GD+R+AI LQ
Sbjct: 170 EPIQSRCAILRYGKLSDQEILKRLVEICDAENVKYANEGLAAIIFTAEGDMRQAINNLQS 229
Query: 260 AARLF 264
F
Sbjct: 230 TVSGF 234
>gi|149235013|ref|XP_001523385.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146452794|gb|EDK47050.1| activator 1 37 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 321
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 131/216 (60%), Gaps = 7/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ EE V L + N PHM+ G PG GKTT+ +A++L G
Sbjct: 9 PWVEKYRPRVLDDIVGNEETVERLKIIAKDGNIPHMIISGLPGIGKTTSVHCLAYELLGK 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y +ELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 69 EYYHQATMELNASDDRGIDVVRNKIKQFA-------QTKILIPPGRTKIIILDEADSMTP 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN +IIEPL SRCA R+ LS+E + +R+L I
Sbjct: 122 GAQQALRRTMEIYSNTTRFVFACNQSLKIIEPLQSRCAILRYNKLSDEEVLARLLEIIKA 181
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + E L L ++GD+R+AI LQ FG
Sbjct: 182 EDVKFNNEGLQALIFSAEGDMRQAINNLQSTVAGFG 217
>gi|449301028|gb|EMC97039.1| hypothetical protein BAUCODRAFT_147217 [Baudoinia compniacensis
UAMH 10762]
Length = 397
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 151/242 (62%), Gaps = 6/242 (2%)
Query: 24 STTQSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
S Q S ++ + KR A P+ + + PWVEKYRP + DV+ +++ + +++
Sbjct: 18 SDIQFSAANTDTKGKRSAANLPIEAEDNLPWVEKYRPASLSDVSGHHDILATINKFVDSN 77
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA- 139
PH+L YGPPGTGKT+T LA+A +++G + VLELNASDDRGI VVR +IKTF++
Sbjct: 78 RLPHLLLYGPPGTGKTSTVLALARRIYGNRNMRQMVLELNASDDRGIEVVREQIKTFSST 137
Query: 140 --VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197
+ GS + +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY +
Sbjct: 138 KQIFAGSFDKTQQDSIANFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHK 197
Query: 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
+ L SRC +FRF PL + + V + EEG+N+ +A+ +L S+S+GD+RRA+ L
Sbjct: 198 LSPALLSRCTRFRFSPLKDADIRHLVDKVIVEEGVNIAPDAVDSLVSLSKGDMRRALNVL 257
Query: 258 QG 259
Q
Sbjct: 258 QA 259
>gi|395326617|gb|EJF59024.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 354
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 135/210 (64%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV ++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 36 PWVEKYRPVTLDDVVSHHDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGT 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y+ ++LELNASDDRGI VVR +IK FA + YK+IILDEAD MT
Sbjct: 96 E-YRKQILELNASDDRGIEVVREQIKNFAETRTLFSK--------GYKLIILDEADMMTT 146
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + RV ++ +
Sbjct: 147 AAQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVEKRVNNVIDA 206
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EG+ + AE L +S+GD+RRA+ LQ
Sbjct: 207 EGVKITAEGKQALLKLSKGDMRRALNVLQA 236
>gi|344231516|gb|EGV63398.1| hypothetical protein CANTEDRAFT_98513 [Candida tenuis ATCC 10573]
Length = 331
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 143/209 (68%), Gaps = 9/209 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q E+V + ++ PH+LFYGPPGTGKT+T +A+A +++GP
Sbjct: 9 PWVEKYRPETLDEVYGQSEIVDTVRKFVQEGKLPHLLFYGPPGTGKTSTIIALAREIYGP 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK+ VLELNASDDRGI+VVR +IK FA+ + +K+IILDEAD+MT
Sbjct: 69 K-YKNMVLELNASDDRGIDVVRNQIKDFASTMQIFSK--------GFKLIILDEADAMTS 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+P+ + + R+ ++ +
Sbjct: 120 VAQNALRRIIEKYTKNTRFCILANYSHKLNPALVSRCTRFRFQPIHTDAIRERLKNVVIK 179
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + + +A+ +L ++SQGD+RRA+ LQ
Sbjct: 180 EKITIKPDAIESLLTLSQGDMRRALNVLQ 208
>gi|366988323|ref|XP_003673928.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
gi|342299791|emb|CCC67547.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
Length = 336
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 137/211 (64%), Gaps = 9/211 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV Q EVV + L PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDDVYGQTEVVTTVRKFLAEGKLPHLLFYGPPGTGKTSTIVALAREIYGR 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL E + R+ ++
Sbjct: 125 AAQNALRRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPREAIEMRIANVLVH 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
E L L EA L ++SQGD+RR + LQ +
Sbjct: 185 ENLKLSDEAKEALITLSQGDMRRVLNVLQAS 215
>gi|358059664|dbj|GAA94596.1| hypothetical protein E5Q_01248 [Mixia osmundae IAM 14324]
Length = 414
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 144/246 (58%), Gaps = 31/246 (12%)
Query: 35 DEVKRKMAPVLQ---SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
D+ K K PV S PWVEKYRP + DV +++V + + PH+LFYGPP
Sbjct: 61 DKGKAKQEPVEAHELDSLPWVEKYRPATLDDVVSHKDIVSTIDKFISLNRLPHLLFYGPP 120
Query: 92 GTGKTTTALAIAHQLFGP----------------ELYKSRVLELNASDDRGINVVRTKIK 135
GTGKT+T LA+A +++G ++ VLELNASDDRGI+VVR +IK
Sbjct: 121 GTGKTSTILAVARKIYGGTGNSIRGGVSGKGKEGSSMRNNVLELNASDDRGIDVVRDQIK 180
Query: 136 TFAAVAV--GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193
FA+ + SG YK+IILDEAD MT AQNALRR +E Y+K RF ICN
Sbjct: 181 NFASTRMIFSSG----------YKLIILDEADMMTTTAQNALRRVIEQYTKNVRFCIICN 230
Query: 194 YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRA 253
Y++RII + SRC +FRF PL + R+ H+ + E +NL + L +S+GD+RRA
Sbjct: 231 YVNRIIPAVQSRCTRFRFGPLETTEVDRRIQHVVDAESVNLTQDGREALLKLSKGDMRRA 290
Query: 254 ITYLQG 259
+ LQ
Sbjct: 291 LNVLQA 296
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 146/227 (64%), Gaps = 13/227 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP + ++ Q+E++ L N +E + PH+LF G PG GKTT AL +A L+G
Sbjct: 3 KPWVEKYRPTTLSEIVGQKEIIERLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 DD-WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + +I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDVLDYMNYIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
E + ++ + +S+GD+R+++ LQ AA + S++ +D++
Sbjct: 173 ENENITIEKSGSDAIIYVSEGDMRKSVNVLQTAAAV--SNVIDEDIV 217
>gi|452981800|gb|EME81559.1| hypothetical protein MYCFIDRAFT_188590 [Pseudocercospora fijiensis
CIRAD86]
Length = 367
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 144/218 (66%), Gaps = 4/218 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 41 EDNLPWVEKYRPNSLSDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARK 100
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGS-GQRRGGYPCPPYKIIIL 161
++G + + VLELNASDDRGI+VVR +IKTF++ + GS + + YK+IIL
Sbjct: 101 IYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSKQDDSMATYKLIIL 160
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 161 DEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDIRR 220
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EEG+N+ ++A +L ++S+GD+RRA+ LQ
Sbjct: 221 LVDKVIIEEGVNIASDATDSLVTLSKGDMRRALNVLQA 258
>gi|134083012|emb|CAK42775.1| unnamed protein product [Aspergillus niger]
Length = 342
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 153/253 (60%), Gaps = 11/253 (4%)
Query: 24 STTQSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
S Q S + + + KR A PV Q + PWVEKYRP ++DV+ ++++ + +E
Sbjct: 16 SAIQFSSDNTSGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINKFVEAN 75
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
PH+L YGPPGTGKT+T LA+A +++G + + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 76 RLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIKTFAST 135
Query: 141 -----AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195
S YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 136 KQIFSMAPSSTSTSSSTLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYT 195
Query: 196 SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255
++ L SRC +FRF PL E + V + +E +N+ EA+ +L +S+GD+RRA+
Sbjct: 196 HKLSPALLSRCTRFRFSPLKEADIRVLVDIVIEKEQVNIQPEAVDSLVRLSKGDMRRALN 255
Query: 256 YLQGAARLFGSSI 268
LQ F SSI
Sbjct: 256 VLQAC---FASSI 265
>gi|448732321|ref|ZP_21714602.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
gi|445804894|gb|EMA55124.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
Length = 325
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 142/219 (64%), Gaps = 10/219 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ W+EKYRP+ + +V E +V L + + + PH+LF GP G GKTT+A+AIA +++
Sbjct: 12 DEIWIEKYRPETLANVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSAMAIAREVY 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + ++ LELNASD+RGI+VVR +IK FA + G GY Y+II LDEAD++
Sbjct: 72 GDD-WRENFLELNASDERGIDVVRDRIKDFARTSFG------GYD---YRIIFLDEADAL 121
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME ++ TRF CNY S+II+P+ SRCA FRF PL+EE + V +
Sbjct: 122 TSDAQSALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYVRQVA 181
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
EG+ + + + L + GD+R+A+ LQ AA G+
Sbjct: 182 EREGIEVTDDGVDALVYAADGDMRKALNGLQAAATTEGA 220
>gi|219117762|ref|XP_002179670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408723|gb|EEC48656.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 338
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 140/215 (65%), Gaps = 13/215 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP++++D+ Q+++V +TN +++ N PH+L YGPPGTGKT+T +A A +++G
Sbjct: 18 PWVEKYRPQRLEDLVSQDDIVSSITNLIDSENLPHLLLYGPPGTGKTSTIVAAAKRMYGS 77
Query: 110 E-LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADS 166
Y S LELNASD RGI+VVR +IK FA G+ Q +G K+IILDEAD+
Sbjct: 78 SSAYSSMTLELNASDARGIDVVRNEIKEFA----GTKQLFNKG------IKLIILDEADA 127
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT DAQ ALRR +E Y+K RF +CNY+S+II L SRC +FRF PLS + + R+ +
Sbjct: 128 MTSDAQFALRRIIEKYTKNARFCLVCNYVSKIIPALQSRCTRFRFAPLSRDQIEGRLTEV 187
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
E + + + +S GD+RR + LQ A
Sbjct: 188 AEAEKCKTTQDGIDAILRLSGGDMRRVLNLLQSTA 222
>gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864]
Length = 348
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 146/231 (63%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ ++++ + + PH+LFYGPPGTGKT+T LA A +++G
Sbjct: 30 PWVEKYRPSSLDELISHKDIISTIDRFITEDRVPHLLFYGPPGTGKTSTILACAKKMYGN 89
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ +S VLELNASDDRGI VVR +IK FA+ + GG K++ILDEAD+MT
Sbjct: 90 RM-QSMVLELNASDDRGIGVVREQIKEFASTRTITSS--GGT-----KLVILDEADAMTS 141
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR +E Y++ TRF ICNY+S+I + SRC +FRF PLS E M R+ +
Sbjct: 142 DAQAALRRVIEKYTRNTRFCLICNYVSKITPAIQSRCTRFRFAPLSSEQMLDRLNFVIES 201
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +N+ + + L ++QGD+R+ + LQ A F ++ + + +G+P
Sbjct: 202 ERVNVTDDGKAALMRLAQGDMRKVLNILQSTAMAF-DTVDETSVYTCTGFP 251
>gi|171677049|ref|XP_001903476.1| hypothetical protein [Podospora anserina S mat+]
gi|170936592|emb|CAP61251.1| unnamed protein product [Podospora anserina S mat+]
Length = 389
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 141/218 (64%), Gaps = 6/218 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVSLDDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI+VVR +IKTFA+ ++G+ + G +K+IIL
Sbjct: 100 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGASTSKTGLAG--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRV 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + +EE + + EA L +S+GD+RRA+ LQ
Sbjct: 218 LVDKVIDEEHIKIKPEAADALVKLSKGDMRRALNVLQA 255
>gi|448683820|ref|ZP_21692440.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
gi|445783393|gb|EMA34222.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
Length = 325
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 137/213 (64%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + +I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVADEIRNIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EE + L + L L + GD+R+AI LQ A+
Sbjct: 184 EEDIELTEDGLDALVYAADGDMRKAINGLQAAS 216
>gi|119499175|ref|XP_001266345.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
gi|119414509|gb|EAW24448.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
Length = 396
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 152/243 (62%), Gaps = 7/243 (2%)
Query: 24 STTQSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
S Q S + + KR A PV Q + PWVEKYRP + DV+ ++++ + +E
Sbjct: 17 SAIQFSSDNASKRAKRPAADLPVEAQDNLPWVEKYRPNTLDDVSGHQDILATINKFIEAN 76
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
PH+L YGPPGTGKT+T LA+A +++G + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 77 RLPHLLLYGPPGTGKTSTILALARRIYGSNNMRQMVLELNASDDRGIDVVREQIKTFAST 136
Query: 141 ----AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
++ + G +K+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 137 KQIFSMAAPSASSGSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTH 196
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
++ L SRC +FRF PL E+ + S V + +E +++ EA+S+L +S+GD+RRA+
Sbjct: 197 KLSPALLSRCTRFRFSPLKEQDIRSLVDQVIEKEQIHIQPEAVSSLVRLSKGDMRRALNV 256
Query: 257 LQG 259
LQ
Sbjct: 257 LQA 259
>gi|116205575|ref|XP_001228598.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176799|gb|EAQ84267.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 389
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 140/218 (64%), Gaps = 6/218 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G E + VLELNASDDRGI+VVR +IKTFA+ +G+ R G +K+IIL
Sbjct: 100 IYGSENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGASASRTGIAG--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ +
Sbjct: 158 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRV 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EE + + EA L +S+GD+RRA+ LQ
Sbjct: 218 LVDKVIEEETVKIIPEATEALVRLSKGDMRRALNVLQA 255
>gi|392597749|gb|EIW87071.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 334
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 142/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + NCPH++ G PG GKTT+ +AHQL G
Sbjct: 14 PWVEKYRPTLLDDVVGNVETIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK+FA Q++ P +KI+ILDEADSMT
Sbjct: 73 DAYKEGVLELNASDERGIDVVRNKIKSFA-------QKKVTLPPGRHKIVILDEADSMTG 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L + + +R+L IC E
Sbjct: 126 GAQQALRRTMEIYSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEVLARLLEICKE 185
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + + L+ L +GD+R+AI LQ FG ++ +++ V P
Sbjct: 186 ENVQYNDDGLTALIFTCEGDMRQAINNLQSTHSGFG-FVSGENVFKVCDQP 235
>gi|317036017|ref|XP_001397471.2| replication factor C subunit 3 [Aspergillus niger CBS 513.88]
gi|350633381|gb|EHA21746.1| hypothetical protein ASPNIDRAFT_49138 [Aspergillus niger ATCC 1015]
Length = 396
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 153/253 (60%), Gaps = 11/253 (4%)
Query: 24 STTQSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA 80
S Q S + + + KR A PV Q + PWVEKYRP ++DV+ ++++ + +E
Sbjct: 16 SAIQFSSDNTSGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINKFVEAN 75
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
PH+L YGPPGTGKT+T LA+A +++G + + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 76 RLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIKTFAST 135
Query: 141 -----AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195
S YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 136 KQIFSMAPSSTSTSSSTLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYT 195
Query: 196 SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255
++ L SRC +FRF PL E + V + +E +N+ EA+ +L +S+GD+RRA+
Sbjct: 196 HKLSPALLSRCTRFRFSPLKEADIRVLVDIVIEKEQVNIQPEAVDSLVRLSKGDMRRALN 255
Query: 256 YLQGAARLFGSSI 268
LQ F SSI
Sbjct: 256 VLQAC---FASSI 265
>gi|448364052|ref|ZP_21552646.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
gi|445644940|gb|ELY97947.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
Length = 331
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 150/231 (64%), Gaps = 11/231 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ W+EKYRP+++ ++ E +V L +E + PH++F GP GTGKTT A AIA +++
Sbjct: 18 TEVWIEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVY 77
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + ++ LELNASD RGI+VVR +IK FA + G GY ++II LDEAD++
Sbjct: 78 GDD-WRENFLELNASDQRGIDVVRDRIKDFARASFG------GYD---HRIIFLDEADAL 127
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++V I
Sbjct: 128 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIA 187
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
EG+ + + + L + GD+R+AI LQ AA + G ++ + + +++
Sbjct: 188 ETEGIEVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITA 237
>gi|355571949|ref|ZP_09043157.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
gi|354825045|gb|EHF09280.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
Length = 321
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 139/213 (65%), Gaps = 9/213 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ D+ Q+++V L++ + T N PH+LF G G GKTT A+A+A + F +
Sbjct: 8 WIEKYRPVRLADIVGQDQIVERLSSYVRTGNLPHLLFTGSAGVGKTTAAVALAREFF-KD 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ ELNASD+RGI+VVR +IK FA + G +KI+ LDEAD++T D
Sbjct: 67 SWHMNFRELNASDERGIDVVRNQIKQFARTSPLGG--------AGFKILFLDEADALTPD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME+Y+ RF CNY SRII+P+ SRCA +RF+ LS E ++ +L I E
Sbjct: 119 AQAALRRTMESYASTCRFILSCNYSSRIIDPIQSRCAIYRFRSLSPEAITKEILRIAENE 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
L + EA+ + I+QGD+R+AI LQGAA L
Sbjct: 179 KLTITGEAIDAIIEIAQGDMRKAINALQGAAIL 211
>gi|448680330|ref|ZP_21690647.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
gi|445768774|gb|EMA19851.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
Length = 325
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 137/213 (64%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + +I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EE + L + L L + GD+R+AI LQ A+
Sbjct: 184 EEDIELTEDGLDALVYAADGDMRKAINGLQAAS 216
>gi|403218101|emb|CCK72593.1| hypothetical protein KNAG_0K02300 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 143/223 (64%), Gaps = 11/223 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV Q E+V VL ++ PH+LFYGPPGTGKT+T +A+A +
Sbjct: 3 RESLPWVEKYRPSSLDDVYGQGEIVSVLHKFIQENRLPHLLFYGPPGTGKTSTIVALARE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEA 164
++G Y VLELNASDDRGI+VVR +IK FA+ + S RG +K++ILDEA
Sbjct: 63 IYGKN-YSHMVLELNASDDRGIDVVRNQIKEFASTRQIFS---RG------FKLVILDEA 112
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL E+ + R+
Sbjct: 113 DAMTNAAQNALRRIIEKYTKNTRFCILANYSHKLTPALQSRCTRFRFQPLPEDAIKRRIA 172
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
++ E L + +A+ L +S+GD+RR + LQ + G
Sbjct: 173 NVLVHEHLRVSEDAVQALIKLSKGDMRRVLNVLQASKATLGDD 215
>gi|326427125|gb|EGD72695.1| replication factor C subunit 2 [Salpingoeca sp. ATCC 50818]
Length = 324
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 139/233 (59%), Gaps = 12/233 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK +KD+ EE V L E N P+++ GPPGTGKTT+ L +A L G
Sbjct: 4 PWVEKYRPKVLKDIVGNEETVDRLKVIAEAGNMPNLIIAGPPGTGKTTSILCLARALLGE 63
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP--YKIIILDEADSM 167
++YK V+E NASDDRGI VVR IK F+ R PP +KI+ILDE DSM
Sbjct: 64 DVYKEAVMETNASDDRGIEVVRNNIKMFS---------RKKVTLPPGRHKIVILDEVDSM 114
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRTME Y+ TRF CN +IIEP+ SRCA R+ LS+ + R+L IC
Sbjct: 115 TSAAQQALRRTMEMYANTTRFALACNTSEKIIEPIQSRCAVLRYTRLSDAQLLKRLLEIC 174
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
++E + E L + +QGD+R+AI LQ FG + ++++ V P
Sbjct: 175 DQEMVPKVEEGLEAIIFTAQGDMRQAINNLQSTYAGFG-MVNAENVFKVCDQP 226
>gi|448712798|ref|ZP_21701827.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
gi|445790224|gb|EMA40893.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
Length = 335
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 150/235 (63%), Gaps = 11/235 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ D+ E +V LT +E + PH++F GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPERLDDIKGHENIVPRLTRYVEQDDLPHLMFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYEDD-WQENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+++ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
V I EEG+ L + + L + GD+R+ I LQ AA + G ++ + +++
Sbjct: 181 VREIATEEGIELTDDGVDALVYAADGDMRKGINGLQAAA-VMGETVDEDTVFAIT 234
>gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
Length = 329
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 147/231 (63%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ ++ ++++ + L+ PH+LFYGPPGTGKT+T LA A +L+
Sbjct: 11 PWVEKYRPKEMTELISHQDIISTIQRFLDEDRLPHLLFYGPPGTGKTSTILACARRLYAD 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGI +VR + FA+ + +RG +K++ILDEAD+MT
Sbjct: 71 REFNSMVLELNASDDRGIGIVRGPVLQFASTR--TIFKRG------FKLVILDEADAMTG 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR ME +++ TRF ICNY+S+II + SRC +FRF PL + M R+ H+ E
Sbjct: 123 DAQNALRRVMEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLGVDQMLPRLEHVIQE 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + ++ GD+RR + LQ + + + ++ V+G P
Sbjct: 183 EKVDVTDDGKKAILQLANGDMRRVLNILQSTS-MAHDVVDEDNVYLVTGQP 232
>gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis]
Length = 320
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ E+ V+ L N PHM+ G PG GKTT+ +AH+L G
Sbjct: 10 PWVEKYRPHLLKDIVGNEDTVQRLQTIAADGNMPHMIISGLPGIGKTTSIHCLAHELLG- 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y VLELNASDDRGI VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 69 DAYSQAVLELNASDDRGIEVVRNQIKHFA-------QKKCTLPAGKHKIIILDEADSMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R+L I
Sbjct: 122 GAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLTDEQVLKRLLEIIKL 181
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + L + ++GD+R+AI LQ FG
Sbjct: 182 EDVQYTNDGLEAIIFTAEGDMRQAINNLQSTVAGFG 217
>gi|428174860|gb|EKX43753.1| hypothetical protein GUITHDRAFT_140204 [Guillardia theta CCMP2712]
Length = 331
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/219 (48%), Positives = 137/219 (62%), Gaps = 8/219 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PWVEKYRP+ +K+V E+ V L + N PH+L G PG GKTT LA+A +L
Sbjct: 10 ASLPWVEKYRPQTLKEVVGNEDAVARLQAIAKDGNMPHLLLTGSPGIGKTTCVLALAREL 69
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + +K VLELNASD+RGI+VVR KIK FA Q++ P +KIIILDEADS
Sbjct: 70 LG-DSFKEGVLELNASDERGIDVVRNKIKMFA-------QQKVTLPPGRHKIIILDEADS 121
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT +Q A+RRTME YS TRF CN S IIEP+ SRCA RF LS++ + SR+ I
Sbjct: 122 MTSASQQAMRRTMELYSNTTRFALACNNSSEIIEPIQSRCAILRFAKLSDKELLSRLQDI 181
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
C +E + + L L + GD+R+A+ LQ A FG
Sbjct: 182 CEKEEVLASTDGLEALIFTADGDMRQAVNSLQSTANGFG 220
>gi|354545639|emb|CCE42366.1| hypothetical protein CPAR2_200090 [Candida parapsilosis]
Length = 320
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 131/216 (60%), Gaps = 7/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 8 PWVEKYRPHVLDDIVGNEETIERLKIIVQDGNMPNMIISGLPGIGKTTSVHCLAYELLGK 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y LELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 68 EHYHQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRTKIIILDEADSMTP 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ LS+E + R+L I
Sbjct: 121 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEEVLKRLLDIIKS 180
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + E L L ++GD+R+AI LQ FG
Sbjct: 181 ENVQYNNEGLQALIFSAEGDMRQAINNLQSTVAGFG 216
>gi|307209915|gb|EFN86693.1| Replication factor C subunit 2 [Harpegnathos saltator]
Length = 351
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 151/255 (59%), Gaps = 9/255 (3%)
Query: 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM 85
T+ P S ++VK K SS PW+EKYRP+ D+ E+ V L + N P++
Sbjct: 13 TEILPSTSSNDVKVKEKDSKSSSLPWIEKYRPQVFPDIVGNEDTVSRLAVFAQHGNTPNI 72
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
+ GPPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK FA
Sbjct: 73 IIAGPPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMFA------- 124
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
Q++ P +KIIILDEADSMT+ AQ ALRRTME YS TRF CN IIEP+ SR
Sbjct: 125 QKKVNLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACNNTEEIIEPIQSR 184
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
CA R+ L++ + ++VL +C +E ++ + + + +QGD+R+A+ LQ F
Sbjct: 185 CAMLRYGKLTDAQILAKVLEVCEKENVSYTDDGMEAIVFTAQGDMRQALNNLQSTYNGF- 243
Query: 266 SSITSKDLISVSGYP 280
+ + +++ V P
Sbjct: 244 NHVNGENVFKVCDEP 258
>gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|374107422|gb|AEY96330.1| FADR111Wp [Ashbya gossypii FDAG1]
Length = 321
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 131/215 (60%), Gaps = 8/215 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK +KDV +E V L N PHM+ G PG GKTT+ +AH+L G
Sbjct: 11 PWVEKYRPKLLKDVVGNDETVERLQQIARDGNMPHMIISGLPGIGKTTSIHCLAHELLG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 70 DAYSQAVLELNASDDRGIDVVRNQIKQFA-------QKKCTLPPGKHKIIILDEADSMTS 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R+ I
Sbjct: 123 GAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLFEIIKA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
E + + L L ++GD+R+AI LQ F
Sbjct: 183 ENVQYTNDGLEALIFTAEGDMRQAINNLQSTVAGF 217
>gi|365982341|ref|XP_003668004.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
gi|343766770|emb|CCD22761.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
Length = 338
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 137/211 (64%), Gaps = 9/211 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV Q EVV + LE PH+LFYGPPGTGKT+T +A+A ++FG
Sbjct: 15 PWVEKYRPESLDDVYGQTEVVTTVRKFLEEGKLPHLLFYGPPGTGKTSTIVALAREIFGK 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 75 N-YSNMVLELNASDDRGIEVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL + + R+ ++
Sbjct: 126 AAQNALRRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPRDAIEKRISNVLIH 185
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
E + + +A L ++SQGD+RR + LQ +
Sbjct: 186 ENIKISDDAKDALITLSQGDMRRVLNVLQAS 216
>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
Length = 344
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 142/232 (61%), Gaps = 9/232 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+ + L N PHM+ G PG GKTT+ L +AHQL G
Sbjct: 24 PWVEKYRPVVLDDIVGNEDTIARLKVIARDGNMPHMIISGMPGIGKTTSVLCLAHQLLGS 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 84 A-YREGVLELNASDERGIDVVRNKIKGFA-------QKKVNLPPGRHKIVILDEADSMTA 135
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L+E+ + R+ IC
Sbjct: 136 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLNEQQIQKRLSEICKA 195
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
E +++ + ++ L ++GD+R+AI LQ F + S+++ V+ P+
Sbjct: 196 ESVSITDDGMAALIMTAEGDMRQAINNLQSTVAGF-DLVNSENVFKVADQPS 246
>gi|170589980|ref|XP_001899751.1| Activator 1 40 kDa subunit [Brugia malayi]
gi|158592877|gb|EDP31473.1| Activator 1 40 kDa subunit, putative [Brugia malayi]
Length = 326
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 146/243 (60%), Gaps = 16/243 (6%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ SS PWVEKYRPK + +V E V++ L + N P+++ GPPG GKTT+ A+A
Sbjct: 1 MNSSTPWVEKYRPKMLSEVVGNEFVIQRLAAFAKQGNTPNIIISGPPGCGKTTSMWALAR 60
Query: 105 QLFGPELYKSRVLELNASDDR-------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157
++ G L K+ LELNASDDR GI+VVR KIKTFA Q + P +K
Sbjct: 61 EMLGDRL-KNACLELNASDDREIFFKFSGIDVVRNKIKTFA-------QSKVTLPPGRHK 112
Query: 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
IIILDE DSMTE AQ ALRRTME YSK TRF CN ++IEP+ SRCA RF LSEE
Sbjct: 113 IIILDEVDSMTEGAQQALRRTMEIYSKTTRFTLACNQSGKVIEPIQSRCAILRFSKLSEE 172
Query: 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+ R+L IC E + D + L +QGD+R+A+ LQ F +++T+ ++ V
Sbjct: 173 QIVKRLLQICEAEKVTYDDSGIDALVFTAQGDMRQALNNLQCTVVGF-NNVTADNVFRVC 231
Query: 278 GYP 280
P
Sbjct: 232 DEP 234
>gi|449550911|gb|EMD41875.1| hypothetical protein CERSUDRAFT_102269 [Ceriporiopsis subvermispora
B]
Length = 346
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 134/216 (62%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ DV E + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 25 PWVEKYRPQKLDDVVGNTETIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIKTFA Q++ P KI+ILDEADSMT
Sbjct: 84 DAYKEGVLELNASDERGIDVVRNKIKTFA-------QKKVTLPPGRQKIVILDEADSMTS 136
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME Y+ TRF CN ++IIEP+ SRCA R+ L + + R+L IC
Sbjct: 137 GAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYTKLRDTEVLQRLLEICQA 196
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + + L+ L ++GD+R+AI LQ FG
Sbjct: 197 EQVKYNDDGLTALIFTAEGDMRQAINNLQSTHSGFG 232
>gi|325186968|emb|CCA21512.1| replication factor C subunit 2 putative [Albugo laibachii Nc14]
Length = 327
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 139/234 (59%), Gaps = 9/234 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +E + L N +++ GPPGTGKTT+ L +A L GP
Sbjct: 8 PWVEKYRPTSLDDVVANQETITCLKAMARDGNMTNIILSGPPGTGKTTSILCLARALLGP 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K +LELNASDDRGI+ VRTKIK FA Q++ P +K+IILDEADS+T
Sbjct: 68 AL-KHAILELNASDDRGIDTVRTKIKLFA-------QQKVNLPPGRHKLIILDEADSITG 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA RF L E++ R+L IC E
Sbjct: 120 SAQQALRRTMEIYSSTTRFALACNNSTKIIEPIQSRCAILRFTRLKNELILERLLIICRE 179
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGG 283
E L + L+ + ++GD+R AI LQ FG +IT ++ P G
Sbjct: 180 ERLTYQDDGLAAIIFTAEGDMRNAINNLQATHAGFG-AITDANVFKACDQPHPG 232
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 144/227 (63%), Gaps = 11/227 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV E +V L +E + PH++F GP G GKT +A AIA +L+G E
Sbjct: 18 WIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYG-E 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T D
Sbjct: 77 DWREHFLELNASDERGIDVVRDRIKNFA---------RSSFGGVEYRIIFLDEADALTSD 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF LS+E + ++ I E
Sbjct: 128 AQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETE 187
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
G++L + + L + GD+R+AI LQ AA + G + + + +++
Sbjct: 188 GISLTDDGVDALVYAAAGDMRKAINGLQAAA-VMGEEVDEEAVFAIT 233
>gi|409051889|gb|EKM61365.1| hypothetical protein PHACADRAFT_111883 [Phanerochaete carnosa
HHB-10118-sp]
Length = 342
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 141/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV E + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 22 PWVEKYRPKTLDDVVGNSETIERLKVVARDGNCPHIILSGLPGIGKTTSIHCLAHQLLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR K+K FA Q++ P +KI+ILDEADSMT
Sbjct: 81 DAYKEGVLELNASDERGIDVVRNKVKAFA-------QKKVTLPPGRHKIVILDEADSMTP 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME ++ TRF CN ++IIEP+ SRCA R+ L + + R+L IC
Sbjct: 134 GAQQALRRTMEIFANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDAEVLRRLLEICEM 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EG+ + + L+ L ++GD+R+AI LQ FG +++ ++ V P
Sbjct: 194 EGVKYNDDGLTALIFTAEGDMRQAINNLQSTFSGFG-FVSADNVFKVCDQP 243
>gi|328874863|gb|EGG23228.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 368
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 156/269 (57%), Gaps = 40/269 (14%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ S PWVEKYRPK +K++ E+++ +T ++ + PH+LFYGPPGTGKT+T A+A
Sbjct: 17 IHDSLPWVEKYRPKSLKELISHEDIIDTITKLIDKNSLPHLLFYGPPGTGKTSTIQAVAR 76
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+L+G Y VLELNASDDRGI+VVR +IK+FA GS G + +K+IILDEA
Sbjct: 77 KLYGDN-YSRMVLELNASDDRGIDVVREQIKSFA----GS---MGIFNTNQFKLIILDEA 128
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT AQ ALRR +ETY+K TRF ICNY+ ++I L SRC +FRF L + R+
Sbjct: 129 DSMTNAAQTALRRVIETYTKTTRFCMICNYVGKLIPALQSRCTRFRFGRLGKPQSIKRIK 188
Query: 225 HICNEEG------------------------------LNLDAEALSTLSSISQGDLRRAI 254
I +E +N+ EA++++ +++GD+R+++
Sbjct: 189 EIVEQEKYDIIMTDKLPINIFQTHTDCPPIHSNVMFRMNISDEAITSIELLAEGDMRKSL 248
Query: 255 TYLQGAARLF--GSSITSKDLISVSGYPT 281
LQ + G IT D+ +G P+
Sbjct: 249 NLLQSVSMSSDDGVQITDADIYRCAGVPS 277
>gi|67470640|ref|XP_651283.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|56468001|gb|EAL45896.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|407035358|gb|EKE37658.1| replication factor C familiy protein [Entamoeba nuttalli P19]
gi|449710429|gb|EMD49506.1| replication factor C familiy protein, putative [Entamoeba
histolytica KU27]
Length = 325
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 145/234 (61%), Gaps = 10/234 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + E ++ L + PHMLFYGPPGTGKTTTALAI QL
Sbjct: 2 SLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQLC 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + + + VLELNASD+RGI+VVR +IK+FA+ R C K IILDE+D +
Sbjct: 62 GTK-FSALVLELNASDERGIDVVRDQIKSFAST------RTLYTNCT--KFIILDESDKL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQNALRRT+E +S RF FICN + I + SRCAK RF PLS + ++ V +I
Sbjct: 113 TKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPDALTKIVENIT 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
+EG+ +D +A ++ IS+GD R I LQ A + IT+ L ++ G PT
Sbjct: 173 MKEGMEIDEDAKKSIIEISKGDARSIINTLQ-ALSMTCKQITNSTLYTMVGLPT 225
>gi|112982853|ref|NP_001036917.1| replication factor C subunit 2 [Bombyx mori]
gi|54290087|dbj|BAD61055.1| RFC40 [Bombyx mori]
Length = 340
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 143/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ D+ E+ V L +T N P+++ GPPG GKTTT L +A L G
Sbjct: 22 PWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARVLLGV 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+VVR KIK FA Q++ P +KI+ILDEADSMT+
Sbjct: 82 S-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPPGRHKIVILDEADSMTD 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF N +IIEP+ SRCA R+ LS+ + ++V+ ICN+
Sbjct: 134 GAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYSRLSDAQILAKVIEICNK 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E L+ E +S + +QGDLR A+ LQ A+ FG I+ ++ V P
Sbjct: 194 ENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFG-HISPDNVFKVCDEP 243
>gi|242019775|ref|XP_002430334.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212515458|gb|EEB17596.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 340
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 142/233 (60%), Gaps = 9/233 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP+++ D+ Q+ +V + + PH+LFYGPPGTGKTTT LA A L+
Sbjct: 12 NMPWVEKYRPQKLDDLISQDYIVNTIRKLISHKQLPHLLFYGPPGTGKTTTILACAKVLY 71
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
P + S VLELNASDDRGI VR I FA+ +GG K+IILDEAD+M
Sbjct: 72 TPAQFASMVLELNASDDRGIGTVRGAILDFASTKT---MFQGG-----VKLIILDEADAM 123
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRR ME Y+ RF ICNY+ +II + SRC KFRF PL + + R+ ++
Sbjct: 124 THDAQNALRRIMEKYTANVRFCIICNYLGKIIPAIQSRCTKFRFAPLDSKEILPRLEYVI 183
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+E + + + + ++ QGD+R+ + LQ F S + +++ + G+P
Sbjct: 184 EQEKIKISDDGKQAVLTLGQGDMRKVLNILQSTFVSF-SEVNEENVYTCVGHP 235
>gi|390604618|gb|EIN14009.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 342
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + DV E + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 22 PWVEKYRPKVLDDVVGNIETIERLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI VVR KIKTFA Q++ P +KI+ILDEADSMT
Sbjct: 81 NAYKEGVLELNASDERGIEVVRNKIKTFA-------QKKVTLPPGRHKIVILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME Y+ TRF CN ++IIEP+ SRCA R+ L + + R+L IC
Sbjct: 134 GAQQALRRTMEIYANTTRFCLACNMSNKIIEPIQSRCAILRYSKLRDTELLKRLLEICEL 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + + L+ L S+GD+R+AI LQ FG
Sbjct: 194 EKVKYNDDGLTALIFTSEGDMRQAINNLQSTWSGFG 229
>gi|302698263|ref|XP_003038810.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
gi|300112507|gb|EFJ03908.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
Length = 340
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 134/216 (62%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+ +AHQL GP
Sbjct: 20 PWVEKYRPQVLDDVVGNADTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 80 A-YKEGVLELNASDERGIDVVRNKIKNFA-------QKKVTLPPGRHKIIILDEADSMTA 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC
Sbjct: 132 GAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYGKLKDQEILKRLLEICEA 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + + L+ L ++GD+R+AI LQ FG
Sbjct: 192 EKVEYNDDGLTALIFTAEGDMRQAINNLQSTWSGFG 227
>gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi]
gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi]
Length = 347
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 142/234 (60%), Gaps = 6/234 (2%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP + ++ +E+ L + PH+LFYGPPGTGKT+T LA A L+
Sbjct: 14 NMPWVEKYRPASLTELVSHQEITDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLY 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADS 166
+ S VLELNASDDRGI +VR +I FA + + + + P K+IILDEAD+
Sbjct: 74 TSKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVP----KLIILDEADA 129
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRR +E ++ RF ICNY+S+II + SRC + RF PLS E + R+ HI
Sbjct: 130 MTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHI 189
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E L + + L ++++GD+RR I LQ A F ++ ++ GYP
Sbjct: 190 VQVETLTVTEDGQKALLNLAEGDMRRVINILQSTAMAF-KTVDEPNVYRCVGYP 242
>gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 398
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 140/219 (63%), Gaps = 7/219 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A Q
Sbjct: 40 EDNLPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQ 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-----AVGSGQRRGGYPCPPYKIII 160
++G + + VLELNASDDRGI+VVR +IKTFA+ GQ G +K+II
Sbjct: 100 IYGVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQ--AGSKLGAFKLII 157
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ +
Sbjct: 158 LDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIR 217
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + +E + + +A+ +L +S+GD+RRA+ LQ
Sbjct: 218 VLVDQVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQA 256
>gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS]
gi|392865396|gb|EAS31179.2| activator 1 subunit 3 [Coccidioides immitis RS]
Length = 398
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 140/219 (63%), Gaps = 7/219 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A Q
Sbjct: 40 EDNLPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQ 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-----AVGSGQRRGGYPCPPYKIII 160
++G + + VLELNASDDRGI+VVR +IKTFA+ GQ G +K+II
Sbjct: 100 IYGVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQ--AGSKLGAFKLII 157
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ +
Sbjct: 158 LDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIR 217
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + +E + + +A+ +L +S+GD+RRA+ LQ
Sbjct: 218 VLVDQVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQA 256
>gi|443896635|dbj|GAC73979.1| replication factor C, subunit RFC2 [Pseudozyma antarctica T-34]
Length = 374
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 132/209 (63%), Gaps = 8/209 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV ++ + L NCPH+L G PG GKTT+ L +A L G
Sbjct: 22 PWVEKYRPLNLDDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RG++VVR KIKTFA Q++ P +KI+ILDEADSMT
Sbjct: 81 DAYKEGVLELNASDERGVDVVRNKIKTFA-------QKKVSLPAGRHKIVILDEADSMTP 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA R+ + +E + R+L IC
Sbjct: 134 AAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVKDEQILKRLLEICEM 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + E L+ + ++GD+R+AI LQ
Sbjct: 194 EKVEYTDEGLAAIIFTTEGDMRQAINNLQ 222
>gi|346325998|gb|EGX95594.1| activator 1 subunit 3 [Cordyceps militaris CM01]
Length = 420
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 138/220 (62%), Gaps = 6/220 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PW+EKYRP + DV ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 41 EDTLPWIEKYRPVSLDDVEGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 100
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV------AVGSGQRRGGYPCPPYKII 159
++G + VLELNASDDRGI+VVR +IKTFA+ + YK+I
Sbjct: 101 IYGAAQARQMVLELNASDDRGIDVVREQIKTFASTKQIFNMGGAAAAAGRSSAMAGYKLI 160
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 161 ILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEADI 220
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V+ + +EEG+ + AEA+ L +S+GD+RRA+ LQ
Sbjct: 221 RQLVVKVVDEEGVRIGAEAVDALVKLSKGDMRRALNVLQA 260
>gi|320594193|gb|EFX06596.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 386
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 149/245 (60%), Gaps = 25/245 (10%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K ST + P ++ED S PWVEKYRP + DV+ ++++ + +++
Sbjct: 28 KRSTAANLPVEAED------------SLPWVEKYRPVSLDDVSGHQDILATINKFVDSNR 75
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV- 140
PH+L YGPPGTGKT+T LA+A +++G E + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 76 LPHLLLYGPPGTGKTSTILALARRIYGAENTRQMVLELNASDDRGIDVVREQIKTFASTR 135
Query: 141 ---AVGSGQRRGGYPCPP---YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194
A SG P P YK+I+LDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 136 QIFAASSG------PAPSLARYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANY 189
Query: 195 ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254
++ L SRC +FRF PL E + V + +E + + +EA L ++S+GD+RRA+
Sbjct: 190 AHKLSPALLSRCTRFRFSPLKEADIRVLVNKVIADEDVKIMSEAADALVTLSRGDMRRAL 249
Query: 255 TYLQG 259
LQ
Sbjct: 250 NVLQA 254
>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
Length = 330
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 136/218 (62%), Gaps = 13/218 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + + +E++ + ++ PH+LFYGPPGTGKT+T A A QL+G
Sbjct: 11 PWVEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLLFYGPPGTGKTSTIKACAKQLYG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSM 167
+ YKS VLELNASDDRGI VVR +IKTFA+ +G +K+IILDEAD+M
Sbjct: 70 KAYKSMVLELNASDDRGIGVVREQIKTFASTKTVFSAG----------FKLIILDEADAM 119
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ ALRR +E Y+K TRF ICNY+S+I L SRC +FRF PL+ E M +V +
Sbjct: 120 TNDAQAALRRVIEKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLATEHMIQQVQRVI 179
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+ E + + L ++ GD+R+A+ LQ F
Sbjct: 180 DAEHIETTPAGIEALVKLASGDMRKALNILQSTFMAFN 217
>gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
Length = 397
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 139/211 (65%), Gaps = 1/211 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ + VLELNASDDRGI+VVR +IKTFA+ + S G +K+IILDEAD+MT
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMT 165
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ + V + +
Sbjct: 166 SAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRKLVDTVID 225
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+E + + +A+ +L +S+GD+RRA+ LQ
Sbjct: 226 KEQVQIQPDAIDSLVKLSKGDMRRALNVLQA 256
>gi|71004420|ref|XP_756876.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
gi|46095885|gb|EAK81118.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
Length = 343
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 134/209 (64%), Gaps = 8/209 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV ++ + L + NCPH+L G PG GKTT+ L +A L G
Sbjct: 23 PWVEKYRPLRLDDVVGNKDTIDRLKVIQKDGNCPHLLISGLPGIGKTTSVLCLARALLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RG++VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 82 EAYKEGVLELNASDERGVDVVRNKIKTFA-------QKKVSLPPGRHKIIILDEADSMTP 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA R+ + +E + R+L IC
Sbjct: 135 AAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKVRDEHILKRLLEICEM 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + E L+ + ++GD+R+AI LQ
Sbjct: 195 ENVEYSDEGLAAIIFTTEGDMRQAINNLQ 223
>gi|85110311|ref|XP_963397.1| activator 1 subunit 3 [Neurospora crassa OR74A]
gi|28881264|emb|CAD70523.1| related to replication factor C chain Rfc3 [Neurospora crassa]
gi|28925076|gb|EAA34161.1| activator 1 subunit 3 [Neurospora crassa OR74A]
Length = 389
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 138/216 (63%), Gaps = 2/216 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ Q++++ + ++T PH+LFYGPPGTGKT+T LA+A Q
Sbjct: 40 EDSLPWVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQ 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDE 163
++G + VLELNASDDRGI+VVR +IKTFA+ G +K+IILDE
Sbjct: 100 IYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDE 159
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ + V
Sbjct: 160 ADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLV 219
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ +EE + + +A L +S+GD+RRA+ LQ
Sbjct: 220 DKVIDEENVKILPDATDALVRLSKGDMRRALNVLQA 255
>gi|57012999|sp|Q5UZE5.2|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 325
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 136/213 (63%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EE + L + L L + GD+R+AI LQ A+
Sbjct: 184 EEDIELTEDGLDALVYAADGDMRKAINGLQAAS 216
>gi|323508283|emb|CBQ68154.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 341
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 133/209 (63%), Gaps = 8/209 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV ++ + L NCPH+L G PG GKTT+ L +A L G
Sbjct: 21 PWVEKYRPMRLNDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLG- 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RG++VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 80 DAYKEGVLELNASDERGVDVVRNKIKTFA-------QKKVSLPPGRHKIIILDEADSMTP 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA R+ + +E + R+L IC
Sbjct: 133 AAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVRDEQILKRLLEICEM 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + E L+ + ++GD+R+AI LQ
Sbjct: 193 EAVEYSDEGLAAIIFTTEGDMRQAINNLQ 221
>gi|301094042|ref|XP_002997865.1| replication factor C subunit 2 [Phytophthora infestans T30-4]
gi|262109788|gb|EEY67840.1| replication factor C subunit 2 [Phytophthora infestans T30-4]
Length = 327
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 142/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L + N +++ GPPGTGKTT+ L +A +L G
Sbjct: 8 PWVEKYRPRVLADVVGNRDTIASLQAMAKAGNMTNLILSGPPGTGKTTSILCLARELLGT 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L K VLELNASDDRGIN VR+KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 68 SL-KQAVLELNASDDRGINTVRSKIKMFA-------QQKVTLPPGRHKIVILDEADSMTA 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA RF L +E++ R+L +C E
Sbjct: 120 AAQQALRRTMEIFSATTRFALACNNSTKIIEPIQSRCAILRFTRLPDEMLLRRLLTVCQE 179
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + E L+ L ++GD+R A+ LQ A F S ++ +++ V P
Sbjct: 180 ENVGYKEEGLAALIFTAEGDMRNALNNLQATASGF-SFVSDENVFKVCDQP 229
>gi|448638308|ref|ZP_21676281.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|448655209|ref|ZP_21682061.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
gi|445763557|gb|EMA14744.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445765658|gb|EMA16796.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
Length = 325
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 136/213 (63%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EE + L + L L + GD+R+AI LQ A+
Sbjct: 184 EEDIELTEDGLDALVYAADGDMRKAINGLQAAS 216
>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
Length = 347
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 145/231 (62%), Gaps = 10/231 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 29 PWVEKYRPVSLEDVVSHQDITTTIDRFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGS 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK ++LELNASDDRGI+VVR ++K FA + R + YK+IILDEAD MT+
Sbjct: 89 D-YKKQILELNASDDRGIDVVREQVKQFA-------ETRTLF-SKGYKLIILDEADMMTQ 139
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++I + SRC +FRF PL + +V +
Sbjct: 140 QAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIAEVEKQVNRVVEA 199
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + L E L +S+GD+RRA+ LQ + I+ ++ + +G+P
Sbjct: 200 ENVQLTPEGKQALLKLSKGDMRRALNVLQACHAAY-DVISESEVYNCTGHP 249
>gi|170027981|ref|XP_001841875.1| replication factor C subunit 2 [Culex quinquefasciatus]
gi|167868345|gb|EDS31728.1| replication factor C subunit 2 [Culex quinquefasciatus]
Length = 344
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 147/235 (62%), Gaps = 9/235 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+++ PW+EKYRP++ +++ E+ V L N P+++ GPPG GKTTT L +A
Sbjct: 25 KANLPWIEKYRPQKFEEIVGNEDTVSRLGVFATQGNAPNIIIAGPPGVGKTTTILCLARI 84
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G E ++ VLELNAS++RGI+VVR KIK FA Q++ P +KI+ILDEAD
Sbjct: 85 LLG-ENFREAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPRGRHKIVILDEAD 136
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ LS+ + ++++
Sbjct: 137 SMTEGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAMLRYSKLSDSQVLAKLIE 196
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
IC +E L+ D + L + +QGD+R+A+ LQ A FG I+ ++ V P
Sbjct: 197 ICQKEALSYDEDGLEAIVFTAQGDMRQALNNLQSTANGFG-HISGANVFKVCDEP 250
>gi|145343698|ref|XP_001416450.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
gi|144576675|gb|ABO94743.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
Length = 332
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 148/237 (62%), Gaps = 10/237 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + + PW EKYRP + +V + +V V+ + PH+LF+GPPGTGKT+T LA+
Sbjct: 7 PSVNRALPWTEKYRPVGLSEVVAHKAIVDVINKFADGGQLPHLLFHGPPGTGKTSTILAL 66
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+G + + VLELNASD RGINVVR +I++FA+ +K++I+D
Sbjct: 67 AKELYGLN-FSNMVLELNASDARGINVVRDEIQSFASTMRPFS--------TTFKLVIMD 117
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
E DSMT+DAQ ALRR ME Y++ TRF ICNY S++I L SRC KFRF P++ M R
Sbjct: 118 ECDSMTKDAQFALRRIMEKYTQHTRFCLICNYASKVIPALQSRCTKFRFSPIASGDMLQR 177
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279
+ HI N E ++ +L+T+ + +GD+R+ + LQ + L S +T + ++G+
Sbjct: 178 LRHIVNSENFSISDNSLATIQKLGEGDMRKTVNILQSVS-LSASVVTDDAIHLITGH 233
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 143/227 (62%), Gaps = 11/227 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + DV E +V L +E + PH++F GP G GKT +A AIA +L+G E
Sbjct: 18 WIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYG-E 76
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T D
Sbjct: 77 DWREHFLELNASDERGIDVVRDRIKNFA---------RSSFGGVKYRIIFLDEADALTSD 127
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF LS+E + ++ I E
Sbjct: 128 AQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETE 187
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
G++L + + L + GD+R+AI LQ AA + G + + +++
Sbjct: 188 GISLTDDGVDALVYAAAGDMRKAINGLQAAA-VMGEEVDEAAVFAIT 233
>gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
Length = 397
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 138/211 (65%), Gaps = 1/211 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ + VLELNASDDRGI+VVR +IKTFA+ + S G +K+IILDEAD+MT
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMT 165
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ + V +
Sbjct: 166 SAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIKRLVDTVIE 225
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+E + + +A+ +L +S+GD+RRA+ LQ
Sbjct: 226 KEQVQIQPDAIDSLVKLSKGDMRRALNVLQA 256
>gi|336467972|gb|EGO56135.1| hypothetical protein NEUTE1DRAFT_130196 [Neurospora tetrasperma
FGSC 2508]
gi|350289788|gb|EGZ71013.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 389
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 138/216 (63%), Gaps = 2/216 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ Q++++ + ++T PH+LFYGPPGTGKT+T LA+A Q
Sbjct: 40 EDSLPWVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQ 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDE 163
++G + VLELNASDDRGI+VVR +IKTFA+ G +K+IILDE
Sbjct: 100 IYGTANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDE 159
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ + V
Sbjct: 160 ADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLV 219
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ +EE + + +A L +S+GD+RRA+ LQ
Sbjct: 220 DKVIDEENVKILPDATDALVRLSKGDMRRALNVLQA 255
>gi|435845437|ref|YP_007307687.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
gi|433671705|gb|AGB35897.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
Length = 330
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 151/235 (64%), Gaps = 11/235 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E++V L +E + PH+LF GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPERLDEIKGHEDIVPRLQRYVEQNDLPHLLFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDALEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+ I EEG+ + + + L + GD+R+AI LQ AA + G + + + +++
Sbjct: 181 IREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAA-VMGEVVDEETVFAIT 234
>gi|344303413|gb|EGW33662.1| hypothetical protein SPAPADRAFT_59031 [Spathaspora passalidarum
NRRL Y-27907]
Length = 324
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 135/216 (62%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +++D+ EE V L + N P+M+ G PG GKTT+ +AH+L G
Sbjct: 12 PWVEKYRPYKLQDIVGNEETVERLKIIAKDGNMPNMIISGLPGIGKTTSVHCLAHELLG- 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y LELNASDDRGI+VVR KIK FA Q + P +KIIILDEADSMT
Sbjct: 71 EYYHQATLELNASDDRGIDVVRNKIKQFA-------QTKIVLPPGRHKIIILDEADSMTP 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ L++E + +R+L I
Sbjct: 124 GAQQALRRTMEIYSNSTRFAFACNQSSKIIEPLQSRCAILRYNKLADEEVLARLLEIAKM 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + ++E L L ++GD+R+AI LQ FG
Sbjct: 184 EEVKYNSEGLQALIFTAEGDMRQAINNLQSTVAGFG 219
>gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 398
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 140/219 (63%), Gaps = 7/219 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV+ ++++ + +E+ PH+L YGPPGTGKT+T LA+A Q
Sbjct: 40 EDNLPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQ 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-----AVGSGQRRGGYPCPPYKIII 160
++G + + VLELNASDDRGI+VVR +IKTFA+ GQ G +K+II
Sbjct: 100 IYGVKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQ--AGSNLGAFKLII 157
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ +
Sbjct: 158 LDEADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIR 217
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + +E + + +A+ +L +S+GD+RRA+ LQ
Sbjct: 218 VLVDQVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQA 256
>gi|448381294|ref|ZP_21561497.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445663102|gb|ELZ15856.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 330
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 151/236 (63%), Gaps = 11/236 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+ + D+ ++V L N +E + PH+LF GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYS---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
V I EG+++ + + L + GD+R+AI LQ AA + G ++ + + +++
Sbjct: 181 VREIAANEGIDVTDDGVDALVFAADGDMRKAINGLQAAA-VMGETVDEETVFAITA 235
>gi|336258765|ref|XP_003344190.1| hypothetical protein SMAC_08123 [Sordaria macrospora k-hell]
gi|380095124|emb|CCC07626.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 389
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 139/218 (63%), Gaps = 6/218 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ +GS R G +K+IIL
Sbjct: 100 IYGTANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSSASRSGLAG--FKLIIL 157
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ +
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRV 217
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EE + + +A L +S+GD+RRA+ LQ
Sbjct: 218 LVDKVIEEENVQIMPDATDALVKLSKGDMRRALNVLQA 255
>gi|448633051|ref|ZP_21674049.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
gi|445752408|gb|EMA03832.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
Length = 325
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 137/213 (64%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + +I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E + L + L L + GD+R+AI LQ A+
Sbjct: 184 QEDIELTEDGLDALVYAADGDMRKAINGLQAAS 216
>gi|402219931|gb|EJU00004.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 343
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 134/216 (62%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+ +AH L G
Sbjct: 23 PWVEKYRPRVLDDVVGNTDTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHALLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIKTFA Q++ P +KIIILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGIDVVRNKIKTFA-------QKKVTLPPGRHKIIILDEADSMTA 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC
Sbjct: 135 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSKLRDQEVLKRLLEICEA 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + E L+ L ++GD+R+AI +Q FG
Sbjct: 195 EKVKYNDEGLTALIFTAEGDMRQAINNIQSTWSGFG 230
>gi|401623752|gb|EJS41840.1| rfc4p [Saccharomyces arboricola H-6]
Length = 323
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 134/218 (61%), Gaps = 8/218 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ VL PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKVLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KIII
Sbjct: 61 CLAHELLGSS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPQGKHKIII 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E +
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
R+L I E + + L + ++GD+R+AI LQ
Sbjct: 173 KRLLEIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210
>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
gi|83288436|sp|Q3ITJ2.1|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|76556967|emb|CAI48541.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 138/216 (63%), Gaps = 10/216 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + D+ E + L + + PH+LF GP G GKTT A AIA +++G +
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK+FA + G GY ++II LDEAD++T D
Sbjct: 74 -WRENFLELNASDQRGIDVVRDRIKSFARASFG------GYD---HRIIFLDEADALTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL + + ++ I + E
Sbjct: 124 AQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
G+ L + + L + GD+R+AI LQ AA + G+
Sbjct: 184 GIELTDDGVDALVYAADGDMRKAINGLQAAAVMGGT 219
>gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
gi|110287812|sp|Q2FQT9.1|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
Length = 323
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 147/224 (65%), Gaps = 11/224 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ ++D+ Q+E++ L + + PH+LF G GTGKTT A+A+A + FG E
Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFG-E 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ ELNASD+RGI+VVR +IK FA R + +KI+ LDEAD++T D
Sbjct: 67 DWQMNFRELNASDERGIDVVRNQIKQFA--------RTSPFGGSTFKILFLDEADALTTD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTMETY++ RF CNY ++II+P+ SRCA +RF+PL + +S V I ++
Sbjct: 119 AQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQ 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
L + E + + ++QGD+R+AI LQGAA + G I S D+I
Sbjct: 179 NLTVTEEVIDAIFYVAQGDMRKAINALQGAA-ILGRDI-SPDMI 220
>gi|344213231|ref|YP_004797551.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
gi|343784586|gb|AEM58563.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
Length = 407
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 138/213 (64%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 96 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 155
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD+RGI+VVR +IK FA + G + Y+II LDEAD++T
Sbjct: 156 -EDWREHFLELNASDERGIDVVRDRIKNFARTSFGGVE---------YRIIFLDEADALT 205
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + +I
Sbjct: 206 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAA 265
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EE + L + L L + GD+R+AI LQ A+
Sbjct: 266 EEDIELTEDGLDALVYAADGDMRKAINGLQAAS 298
>gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar]
gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar]
Length = 353
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 150/253 (59%), Gaps = 13/253 (5%)
Query: 32 KSEDEVKRKMAPVLQSSQ----PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
++E + K+ AP SS PWVEKYRP ++ ++ EE V L N P+++
Sbjct: 14 QTEVQPKKDEAPAKLSSSGYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIII 73
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
GPPGTGKTT+ L +A L GP + K VLELNAS+DRGI+VVR KIK FA Q+
Sbjct: 74 AGPPGTGKTTSILCLARALLGPAM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQ 125
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
+ P +KIIILDEADSMT+ AQ ALRRTME YSK TRF CN +IIEP+ SRCA
Sbjct: 126 KVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCA 185
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
R+ L +E + R+L + E L + L + +QGD+R+A+ LQ FG
Sbjct: 186 VLRYTKLRDEQIMMRLLEVVERENLVTSNDGLEAIIFTAQGDMRQALNNLQSTNSGFG-Y 244
Query: 268 ITSKDLISVSGYP 280
I S+++ V P
Sbjct: 245 INSENVFKVCDEP 257
>gi|358368166|dbj|GAA84783.1| activator 1 subunit 3 [Aspergillus kawachii IFO 4308]
Length = 402
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/252 (44%), Positives = 152/252 (60%), Gaps = 13/252 (5%)
Query: 27 QSSPEKSEDEVKRKMA--PV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP 83
Q S + + + KR A PV Q + PWVEKYRP ++DV+ ++++ + +E P
Sbjct: 19 QFSSDNTNGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINKFVEANRLP 78
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-- 141
H+L YGPPGTGKT+T LA+A +++G + + VLELNASDDRGI+VVR +IKTFA+
Sbjct: 79 HLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIKTFASTKQI 138
Query: 142 -----VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
S YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY
Sbjct: 139 FSMAPSSSTSTSTSSNLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTH 198
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
++ L SRC +FRF PL E + V + +E +N+ EA+ +L +S+GD+RRA+
Sbjct: 199 KLSPALLSRCTRFRFSPLKEADIRVLVDLVIEKEEVNIQPEAVDSLVRLSKGDMRRALNV 258
Query: 257 LQGAARLFGSSI 268
LQ F SSI
Sbjct: 259 LQAC---FASSI 267
>gi|15223967|ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis thaliana]
gi|12323400|gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana]
gi|17529332|gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana]
gi|21436375|gb|AAM51357.1| putative replication factor C [Arabidopsis thaliana]
gi|332197861|gb|AEE35982.1| replication factor C subunit 3 [Arabidopsis thaliana]
Length = 369
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 140/216 (64%), Gaps = 7/216 (3%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P + PWVEKYRP+ + DVA +++ + PH+L YGPPGTGKT+T LA+
Sbjct: 33 PPQSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAV 92
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +L+GP+ Y++ +LELNASDDRGI+VVR +I+ FA+ S + K+++LD
Sbjct: 93 ARKLYGPK-YRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSS------VKLVLLD 145
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT+DAQ ALRR +E Y+K TRF I N++++II L SRC +FRF PL MS R
Sbjct: 146 EADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQR 205
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+ H+ E L + L+ L +S GD+R+A+ LQ
Sbjct: 206 LKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQ 241
>gi|451999620|gb|EMD92082.1| hypothetical protein COCHEDRAFT_1193657 [Cochliobolus
heterostrophus C5]
Length = 392
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 151/258 (58%), Gaps = 24/258 (9%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDV 63
+FG K GK + N P ++ED + PWVEKYRP + DV
Sbjct: 19 SFGGDSKKGKRSAANL----------PVEAEDTL------------PWVEKYRPASLDDV 56
Query: 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123
++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VLELNASD
Sbjct: 57 EGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASD 116
Query: 124 DRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181
DRGI VVR +IKTF++ + + G +K+I+LDEAD+MT AQ ALRR ME
Sbjct: 117 DRGIEVVREQIKTFSSTKQIFSAAPKAGDSSLATFKLIVLDEADAMTSTAQMALRRIMEK 176
Query: 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241
Y+ TRF I NY ++ L SRC +FRF PL ++ + V + EE +N+ +A +
Sbjct: 177 YTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHLVDKVIEEEKVNITQDATDS 236
Query: 242 LSSISQGDLRRAITYLQG 259
L ++S+GD+RRA+ LQ
Sbjct: 237 LVTLSKGDMRRALNVLQA 254
>gi|409728331|ref|ZP_11271198.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|448722058|ref|ZP_21704598.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|445790282|gb|EMA40949.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
Length = 323
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 141/213 (66%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+++ VA ++V L + + + PH+LF GP G GKTT+A+AIA +++G
Sbjct: 11 EIWIEKYRPQRLSAVAGHADIVGRLESYVAQDDLPHLLFTGPAGVGKTTSAMAIAREVYG 70
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA + G GY Y+II LDEAD++T
Sbjct: 71 DD-WRENFLELNASDERGIDVVRDRIKNFARASFG------GYD---YRIIFLDEADALT 120
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME ++ TRF CNY ++II+P+ SRCA FRF PL + ++ V I
Sbjct: 121 SDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLDGDSVAEYVRRIAE 180
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EEG+ + + + L + GD+R+AI LQ AA
Sbjct: 181 EEGIEITEDGIDALVYAADGDMRKAINGLQAAA 213
>gi|410075631|ref|XP_003955398.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
gi|372461980|emb|CCF56263.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
Length = 332
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 141/215 (65%), Gaps = 9/215 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP + DV Q+E+V + +E PH+LFYGPPGTGKT+T +A+A +
Sbjct: 7 RSNLPWVEKYRPVTLDDVYGQKEIVGTVRKFVEEGKLPHLLFYGPPGTGKTSTIIALARE 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD
Sbjct: 67 IYGKN-YSNMVLELNASDDRGIDVVRNQIKEFAST-------RQIF-SKGFKLIILDEAD 117
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL + + +R+ +
Sbjct: 118 AMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPSDAIETRIAN 177
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
+ E L L+ A L +S+GD+RR + LQ +
Sbjct: 178 VLVHENLKLNDTAKRALLDLSKGDMRRVLNVLQAS 212
>gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata]
Length = 322
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 130/209 (62%), Gaps = 8/209 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ EE V L N PHM+ G PG GKTT+ +AH++ G
Sbjct: 11 PWVEKYRPHLLKDIVGNEETVERLQQIAADGNMPHMIISGLPGIGKTTSIHCLAHEMLG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 70 ESYSQAVLELNASDDRGIDVVRNQIKHFA-------QKKCHLPPGKHKIIILDEADSMTA 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R+L I
Sbjct: 123 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + + L + ++GD+R+AI LQ
Sbjct: 183 EDVQYTNDGLEAIIFTAEGDMRQAINNLQ 211
>gi|167390711|ref|XP_001739466.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165896845|gb|EDR24167.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 539
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 144/234 (61%), Gaps = 10/234 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + E ++ L + PHMLFYGPPGTGKTTTALAI QL
Sbjct: 2 SLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQLC 61
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G + + + VLELNASD+RGI+VVR +IK+FA+ R C K IILDE+D +
Sbjct: 62 GTK-FSALVLELNASDERGIDVVRDQIKSFAST------RTLYTNCT--KFIILDESDKL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQNALRRT+E +S RF FICN + I + SRCAK RF PLS ++ V +I
Sbjct: 113 TKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPNALTKIVENIT 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
+EG+ +D +A ++ IS+GD R I LQ A + IT+ L ++ G PT
Sbjct: 173 TKEGMEIDDDAKKSIIEISKGDARSIINTLQ-ALSMTCKQITNSTLYTMVGLPT 225
>gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Methanoregula boonei 6A8]
gi|166225154|sp|A7I8Y0.1|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8]
Length = 322
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 143/218 (65%), Gaps = 9/218 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S W+EKYRP ++ D+ Q+++V L++ +++ N PH+LF G G GKTT A+ +A +
Sbjct: 3 ESHTIWIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLARE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
FG + ++ ELNASD+RGI+VVR +IK FA R G +KI+ LDEAD
Sbjct: 63 FFG-DSWQMNFRELNASDERGIDVVRNQIKEFART------RPAGDAA--FKILFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T DAQ ALRRTME+Y+K RF CNY S+II+P+ SRCA +RF+PL + + +
Sbjct: 114 ALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITR 173
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
I E L++ EA+ + I+QGD+R+AI LQGAA L
Sbjct: 174 IAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAAIL 211
>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
Length = 345
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 136/213 (63%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 34 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 93
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 94 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 143
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + I
Sbjct: 144 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAA 203
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EE + L + L L + GD+R+AI LQ A+
Sbjct: 204 EEDIELTEDGLDALVYAADGDMRKAINGLQAAS 236
>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_APKG10F13]
Length = 323
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 138/212 (65%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP + +V Q V L + + + PH+LF GPPGTGKTT +LA+A ++FG E
Sbjct: 5 WVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFG-E 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ + ELNASD+RGI+VVR KIK FA A +G G +KII LDEAD++T
Sbjct: 64 HWQHNLHELNASDERGIDVVRGKIKEFARTAPIGGG---------GFKIIFLDEADALTS 114
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS+ RF CNY S+IIEP+ SRCA FRF+PL E + + I
Sbjct: 115 AAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGR 174
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
E L ++ +A L+ ++QGDLRRAI LQ AA
Sbjct: 175 EKLKVNDDAYEALAYLAQGDLRRAINSLQMAA 206
>gi|115655395|ref|XP_790650.2| PREDICTED: replication factor C subunit 2-like [Strongylocentrotus
purpuratus]
Length = 352
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 141/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV EE V L N P+++ GPPGTGKTT+ L +A + G
Sbjct: 34 PWVEKYRPTSLSDVVGNEETVSRLEVFSREGNVPNVIIAGPPGTGKTTSILCLARTMLGA 93
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLE+NAS++RGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 94 S-FKDAVLEMNASNERGIDVVRNKIKMFA-------QKKVTLPKGRHKIIILDEADSMTG 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ A+RRTME +SK TRF CN +IIEP+ SRCA R+ LS+ + R+L IC
Sbjct: 146 AAQQAMRRTMEVFSKTTRFALACNASDKIIEPIQSRCAVLRYSRLSDSQILKRLLEICAA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E ++ + L + +QGD+R+AI LQ FG SITS+++ V P
Sbjct: 206 ENVDHAEDGLEAIIYTAQGDMRQAINNLQSTYAGFG-SITSENVFKVCDEP 255
>gi|388855091|emb|CCF51222.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Ustilago
hordei]
Length = 343
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 131/209 (62%), Gaps = 8/209 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV + + L NCPH+L G PG GKTT+ L +A L G
Sbjct: 23 PWVEKYRPLRLDDVVGNRDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RG+++VR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGVDIVRNKIKNFA-------QKKVSLPPGRHKIVILDEADSMTP 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEP+ SRCA R+ + +E + R+L IC
Sbjct: 135 AAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKIRDEQILKRLLEICKM 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
EG+ E L + S+GD+R+AI LQ
Sbjct: 195 EGVEYSDEGLGAIIFTSEGDMRQAINNLQ 223
>gi|432330756|ref|YP_007248899.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
gi|432137465|gb|AGB02392.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
Length = 322
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 148/232 (63%), Gaps = 10/232 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S W+EKYRP+++ D+ Q+E+V L++ + + N PH+LF G G GKTT A+ +A +
Sbjct: 3 ESHTIWIEKYRPQKLADIVGQDEIVERLSSYVRSGNLPHLLFTGSAGVGKTTAAVTLARE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
F + ++ ELNASD+RGI+VVR +IK FA R +KI+ LDEAD
Sbjct: 63 FF-RDSWQMNFRELNASDERGIDVVRNQIKQFA--------RTTPLGEATFKILFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T DAQ ALRRTME+Y++ RF CNY S+II+P+ SRCA +RFKPL E + V
Sbjct: 114 ALTTDAQAALRRTMESYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKPLGPEAVREEVRR 173
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
I + EGL + A+ + I+QGD+R+AI LQGAA + +I K + S++
Sbjct: 174 IASREGLTITDGAMDAIVYIAQGDMRKAINALQGAA-IINPAIDEKRVYSIT 224
>gi|242218752|ref|XP_002475163.1| predicted protein [Postia placenta Mad-698-R]
gi|220725657|gb|EED79635.1| predicted protein [Postia placenta Mad-698-R]
Length = 332
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 140/231 (60%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E + L + NCPH++ G PG GKTT+ +AHQL G
Sbjct: 24 PWVEKYRPQVLDDIVGNAETIDRLKVIAKDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 82
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 83 DAYKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPPGRHKIVILDEADSMTP 135
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME Y+ TRF CN ++IIEP+ SRCA R+ L + + R+L IC
Sbjct: 136 GAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICEM 195
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + + L+ L S+GD+R+AI LQ FG I+ ++ V P
Sbjct: 196 EKVQYNDDGLTALIFTSEGDMRQAINNLQSTHSGFG-FISGDNVFKVCDQP 245
>gi|70985298|ref|XP_748155.1| DNA replication factor C subunit Rfc3 [Aspergillus fumigatus Af293]
gi|66845783|gb|EAL86117.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus Af293]
gi|159125922|gb|EDP51038.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus A1163]
Length = 396
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 141/218 (64%), Gaps = 4/218 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + +E PH+L YGPPGTGKT+T LA+A +
Sbjct: 42 QDNLPWVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + VLELNASDDRGI+VVR +IKTFA+ ++ + G +K+IIL
Sbjct: 102 IYGSNNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIIL 161
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ + S
Sbjct: 162 DEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRS 221
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + +E + + EA+S+L +S+GD+RRA+ LQ
Sbjct: 222 LVDQVIEKEQIRIQPEAVSSLVRLSKGDMRRALNVLQA 259
>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|448297629|ref|ZP_21487674.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|445578957|gb|ELY33355.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
Length = 329
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 146/229 (63%), Gaps = 11/229 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ WVEKYRP + +V QEE+ L +E + P++LF G G GKTT A AIA +++G
Sbjct: 16 EIWVEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYG 75
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASDDRGI+VVR +IK FA + G GY Y+II LDEADS+T
Sbjct: 76 -EDWRDNFLELNASDDRGIDVVRGRIKEFARASFG------GYS---YRIIFLDEADSLT 125
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF P+S+ + R+ I +
Sbjct: 126 SDAQSALRRTMEQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPISDAAVGERIREIAH 185
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
EG+ + + L + GD+RRA+ LQ AA + G ++ + + +++
Sbjct: 186 IEGIEITDGGVEALVYAADGDMRRAVNSLQAAA-VMGETVDEEVVYTIT 233
>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 398
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 140/217 (64%), Gaps = 3/217 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + +E PH+L YGPPGTGKT+T LA+A +
Sbjct: 42 QDNLPWVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILD 162
++G + + VLELNASDDRGI+VVR +IKTFA+ + + G +K+IILD
Sbjct: 102 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILD 161
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ +
Sbjct: 162 EADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVL 221
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ + +E + + EA+ +L ++S+GD+RRA+ LQ
Sbjct: 222 IDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQA 258
>gi|395645923|ref|ZP_10433783.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
gi|395442663|gb|EJG07420.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
Length = 322
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 145/217 (66%), Gaps = 9/217 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S W+EKYRP+ ++D+ QEE+V L + + + + PH+LF GP G GKTT A+A+A +
Sbjct: 4 NSTIWIEKYRPQTLEDMVGQEEIVERLRSYVRSGSLPHLLFTGPAGVGKTTAAVALAREF 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
FG E ++ ELNASD+RGI+VVR +IK FA + G +K++ LDEAD+
Sbjct: 64 FG-ETWQMNFRELNASDERGIDVVRNQIKQFARTSPLGG--------ATFKVLFLDEADA 114
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
+T DAQ ALRRTME Y++ RF CNY S+II+P+ SRCA +RFK L E ++ +V +
Sbjct: 115 LTPDAQAALRRTMENYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKGLDEAAVAEQVRRV 174
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
E ++L +A+ ++ I++GD+R+A+ LQGAA L
Sbjct: 175 AAAEEISLTDDAVHAIAYIAEGDMRKALNALQGAAIL 211
>gi|403224069|dbj|BAM42199.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 347
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 143/237 (60%), Gaps = 7/237 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ +D+ E+++ L E PH+LF+GPPG GKT+T +AIA L+G
Sbjct: 8 PWVEKYRPETFQDIISHEDIMSTLMVFAEKGQLPHLLFHGPPGAGKTSTIMAIARYLYGS 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSM 167
+ VLELNASD+RGI+ VR +IK+F+ + S P K+IILDEAD M
Sbjct: 68 Q-RNGFVLELNASDERGIDTVREQIKSFSETSNTFSSTSANEDPPRTTLKLIILDEADQM 126
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQNALRR ME YS RF ICN++++II P+ SRC FRF+PL E++ ++ I
Sbjct: 127 TNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPELVRQKIKDIA 186
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----ITSKDLISVSGYP 280
E +++ AL TL I QGD+RR + LQ A + I S +++ SG P
Sbjct: 187 AIEKVSVSECALDTLVDIGQGDMRRVLNCLQVTAMSYAKGSDVVIDSNLILATSGLP 243
>gi|393244589|gb|EJD52101.1| replication factor C subunit 4 [Auricularia delicata TFB-10046 SS5]
Length = 340
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 134/216 (62%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV ++ + L NCPH++ G PG GKTT+ +AH+L G
Sbjct: 20 PWVEKYRPLKLDDVVGNKDTIDRLKVIAREGNCPHIIISGLPGIGKTTSIHCLAHELLG- 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK FA Q++ P +K +ILDEADSMT
Sbjct: 79 DAYKEGVLELNASDERGIDVVRNKIKMFA-------QKKVTLPKGRHKFVILDEADSMTS 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L E + +R+L IC E
Sbjct: 132 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYAKLRNEEIVARLLEICKE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + + + L ++GD+R+AI LQ FG
Sbjct: 192 ESVTYNQDGIEALVFTAEGDMRQAINNLQSTFSGFG 227
>gi|290986773|ref|XP_002676098.1| predicted protein [Naegleria gruberi]
gi|284089698|gb|EFC43354.1| predicted protein [Naegleria gruberi]
Length = 337
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 136/220 (61%), Gaps = 7/220 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ +PWVE+YRP + D+ EE V L E N P+++ GPPGTGKTT+ + +A
Sbjct: 14 EMDRPWVERYRPIDMDDIVGNEEAVMRLRVIAEEGNMPNLILSGPPGTGKTTSIMCLARS 73
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G E+YK VLELNASD+R ++VVR KIK FA Q++ P +KI+ILDEAD
Sbjct: 74 LLGKEVYKEAVLELNASDERTLDVVRNKIKQFA-------QKKVNLPPNRHKIVILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ A+RR ME YS TRF CN S+IIEP+ SRCA R+K L++ + +R++
Sbjct: 127 SMTSAAQQAMRRIMEIYSSTTRFALACNDSSKIIEPIQSRCALVRYKRLTDAELLTRLIV 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
IC E + + L ++ S GD+R AI LQ + FG
Sbjct: 187 ICELEHVQKTEDGLESILYTSDGDMRNAINSLQATYQGFG 226
>gi|297837097|ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
gi|297332271|gb|EFH62689.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/212 (49%), Positives = 134/212 (63%), Gaps = 8/212 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L
Sbjct: 15 NNPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 74
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
GP YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSM
Sbjct: 75 GPN-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSM 126
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRT+E YS TRF CN S+IIEP+ SRCA RF LS++ + R+L +
Sbjct: 127 TSGAQQALRRTIEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILGRLLVVV 186
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
E + E L + + GD+R+A+ LQ
Sbjct: 187 EAENVPYVPEGLEAIIFTADGDMRQALNNLQA 218
>gi|254579519|ref|XP_002495745.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
gi|238938636|emb|CAR26812.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
Length = 338
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 137/210 (65%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV Q EV+ + LET PH+LFYGPPGTGKT++ +A+A +++G
Sbjct: 13 PWVEKYRPESLDDVYGQTEVITTIRKFLETGKLPHLLFYGPPGTGKTSSIIALAREIYGK 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 73 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIFS-KGFKLIILDEADAMTN 123
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL E + R+ ++
Sbjct: 124 AAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPREAIQRRISNVLVR 183
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
E L + A + L +S+GD+RR + LQ
Sbjct: 184 EQLQMTESAENALLDLSRGDMRRVLNVLQA 213
>gi|241955893|ref|XP_002420667.1| AAA ATPase family member, putative; replication factor C (RF-C)
subunit, putative [Candida dubliniensis CD36]
gi|223644009|emb|CAX41749.1| AAA ATPase family member, putative [Candida dubliniensis CD36]
Length = 339
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 140/222 (63%), Gaps = 1/222 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP +++V Q+E+V + +ET PH+LFYGPPGTGKT+T +A+A +
Sbjct: 6 KDNLPWVEKYRPDNLEEVKGQQEIVDTVRKFVETRKLPHLLFYGPPGTGKTSTIIALAKE 65
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G YK +LELNASDDRGI+VVR +IK FA+ + +K+IILDEAD
Sbjct: 66 IYGSINYKDMILELNASDDRGIDVVRNQIKNFASTR-QIFTKNNSINNDQFKLIILDEAD 124
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQN+LRR +E ++K RF + NY ++ L SRC +FRF P+ + R+
Sbjct: 125 AMTNIAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNI 184
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+ +E +N+ ++A+ L +S GD+RRA+ LQ G
Sbjct: 185 VIIKENVNISSDAIDALLKLSNGDMRRALNVLQSCKAALGDD 226
>gi|241725881|ref|XP_002412213.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
gi|215505426|gb|EEC14920.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
Length = 336
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 142/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ EE + L N P+++ GPPG GKTTT L ++ L GP
Sbjct: 20 PWVEKYRPAKFNEIVGNEETIARLEVFSREGNVPNVILSGPPGVGKTTTILCLSRILLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNAS+DRGI+VVR KIK FA Q++ P +K+IILDEADSMTE
Sbjct: 80 S-FRDAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPPGKHKVIILDEADSMTE 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA RF LS+ + +++L IC +
Sbjct: 132 GAQQALRRTMEIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLSDAQVLAKLLDICKQ 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E ++ + L L +QGD+R+AI LQ F S + S+++ V P
Sbjct: 192 EDVSYAEDGLEALVFTAQGDMRQAINNLQSTFVGF-SHVNSENVFKVCDEP 241
>gi|198426342|ref|XP_002130063.1| PREDICTED: similar to Replication factor C (activator 1) 2, 40kDa
[Ciona intestinalis]
Length = 336
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 140/231 (60%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ DV E V L N P+++ GPPG GKTT+ + +A + G
Sbjct: 18 PWVEKYRPTKLSDVVGNEATVSRLEVFANEGNVPNIIIAGPPGAGKTTSIMCLARTMLGA 77
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT
Sbjct: 78 S-YDVAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPKGKHKIIILDEADSMTS 129
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ LS+E + SR++ + ++
Sbjct: 130 GAQQALRRTMEIYSKTTRFALACNQSDKIIEPIQSRCAVLRYSKLSDEQILSRLMEVIDK 189
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EG+ D L L +QGD+R+A+ LQ + F S I S ++ V P
Sbjct: 190 EGVRYDDSGLEALLFTAQGDMRQALNNLQSTHQGF-SFINSDNVFKVCDEP 239
>gi|392590080|gb|EIW79410.1| DNA replication factor [Coniophora puteana RWD-64-598 SS2]
Length = 345
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 142/233 (60%), Gaps = 10/233 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++
Sbjct: 28 SLPWVEKYRPVTLDDVKSHKDITTTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIY 87
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G E Y+ ++LELNASDDRGI+VVR +IK FA + YK+IILDEAD M
Sbjct: 88 GSE-YRKQILELNASDDRGIDVVREQIKQFAETRTLFAK--------SYKLIILDEADMM 138
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+ AQ ALRR +E Y+K RF ICNY+++I + SRC +FRF PL + ++ H+
Sbjct: 139 TQQAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPMAEVEKQIDHVV 198
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L +S+GD+RRA+ LQ + SI ++ + +G P
Sbjct: 199 EAEDCKVTKDGKEALLKLSKGDMRRALNVLQACHAAY-DSIGETEVYNCTGNP 250
>gi|255070803|ref|XP_002507483.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
gi|226522758|gb|ACO68741.1| replication factor c, subunit 2 [Micromonas sp. RCC299]
Length = 334
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 135/219 (61%), Gaps = 8/219 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+S PWVEKYRP ++ D+ ++ V LT T N P+++F GPPG GKTT+ L +AH L
Sbjct: 8 ASLPWVEKYRPTKIDDIVGNKDAVDRLTAIASTGNMPNLIFTGPPGIGKTTSVLCLAHTL 67
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
GP YK VLELNASDDRGI+ VR KIK FA Q++ P +KII+LDEADS
Sbjct: 68 LGPS-YKDAVLELNASDDRGIDAVRNKIKMFA-------QKKVTLPPGRHKIILLDEADS 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT AQ ALRRTME YS TRF CN +IIEP+ SRCA RF LS++ + R++ +
Sbjct: 120 MTSAAQQALRRTMELYSSTTRFALACNASEKIIEPIQSRCAIVRFTRLSDQEVLERIVKV 179
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + L + + GD+R+A+ +Q FG
Sbjct: 180 VEREEVPYVPDGLEAVVFTADGDMRQALNNVQATHSGFG 218
>gi|395334442|gb|EJF66818.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 344
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 134/224 (59%), Gaps = 8/224 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A L PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+
Sbjct: 16 ASTLPYELPWVEKYRPQVLDDVVGNTDTIERLKVIARDGNCPHIIISGMPGIGKTTSIHC 75
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+AHQL G + YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+IL
Sbjct: 76 LAHQLLG-DAYKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPSGRHKIVIL 127
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT AQ ALRRTME Y+ TRF CN ++IIEP+ SRCA R+ L + +
Sbjct: 128 DEADSMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYSKLRDTEVLK 187
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
R+L IC E + + E L L ++GD+R+AI LQ FG
Sbjct: 188 RLLEICEMEKVQYNDEGLEALIFTAEGDMRQAINNLQSTWSGFG 231
>gi|115443244|ref|XP_001218429.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
gi|114188298|gb|EAU29998.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
Length = 398
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 142/218 (65%), Gaps = 4/218 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
Q + PWVEKYRP + DV+ ++++ + +E PH+L YGPPGTGKT+T LA+A +
Sbjct: 41 QDNLPWVEKYRPNTLDDVSGHQDILATINRFIEANRLPHLLLYGPPGTGKTSTILALARK 100
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++G + + VLELNASDDRGI+VVR +IKTFA+ ++G G +K+IIL
Sbjct: 101 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGPQSGSGSSSLASFKLIIL 160
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + S
Sbjct: 161 DEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDIRS 220
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + +E +N+ EA+ +L ++S+GD+RRA+ LQ
Sbjct: 221 LVDLVVEKEQINIQPEAVDSLVTLSKGDMRRALNVLQA 258
>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
Length = 343
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 145/238 (60%), Gaps = 10/238 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P S PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+
Sbjct: 20 PYDDDSLPWVEKYRPVTLDDVVSHKDITTTIDKFIEKNRLPHLLFYGPPGTGKTSTILAV 79
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++GPE Y+ ++LELNASDDRGI+VVR +IK FA + +K++ILD
Sbjct: 80 ARRIYGPE-YRKQILELNASDDRGIDVVREQIKQFAETRTLFSK--------GFKLVILD 130
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD MT+ AQ ALRR +E Y++ RF ICNY+ +I + SRC +FRF PL + + R
Sbjct: 131 EADMMTQAAQAALRRVIEQYTRNVRFCIICNYVGKIAPAIQSRCTRFRFSPLPIKEVERR 190
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
V + EG+ + + + L +++GD+RR + LQ + IT ++ + +G P
Sbjct: 191 VDLVIEAEGVTITPDGKAALLRLARGDMRRVLNVLQACYAAY-EKITENEVYACTGAP 247
>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
gi|42559530|sp|Q9HN27.1|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|226739141|sp|B0R7H7.1|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
Length = 322
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 148/230 (64%), Gaps = 11/230 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ WVEKYRP++++DV ++ L + ++ + PH+LF GP GTGKT ++++IA +L+G
Sbjct: 10 EIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYG 69
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y++I LDEAD++T
Sbjct: 70 DD-WQDNFLELNASDERGIDVVRDRIKDFA---------RSSFGGHNYRVIFLDEADALT 119
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L ++ +++ + I
Sbjct: 120 DDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAE 179
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
EGL + + L + GD+RRAI LQ AA G S+ + + +++
Sbjct: 180 TEGLEHTDDGIDALVYAADGDMRRAINALQ-AASATGDSVNEETVYAITA 228
>gi|346466437|gb|AEO33063.1| hypothetical protein [Amblyomma maculatum]
Length = 377
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 140/231 (60%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ EE + L N P+++ GPPG GKTTT L +A L GP
Sbjct: 60 PWVEKYRPAKFSEIVGNEETIARLEIFSREGNVPNVILSGPPGVGKTTTILCLARILLGP 119
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMTE
Sbjct: 120 S-FREAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPPGKHKIIILDEADSMTE 171
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA RF L++ + +++L IC
Sbjct: 172 GAQQALRRTMEIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLTDAQILAKLLDICKR 231
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L L +QGD+R+AI LQ FG + S+++ V P
Sbjct: 232 EDASYVEDGLEALVFTAQGDMRQAINNLQSTVVGFG-HVNSQNVFKVCDEP 281
>gi|353227396|emb|CCA77906.1| probable RFC4-DNA replication factor C, 37 kDa subunit
[Piriformospora indica DSM 11827]
Length = 334
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 136/216 (62%), Gaps = 9/216 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV EE + L + NCPH++ G PG GKTT+ +AHQL GP
Sbjct: 15 PWVEKYRPQVLDDVVGNEETIDRLKVIAKEGNCPHIIISGLPGIGKTTSIHCLAHQLLGP 74
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR+KIK+FA Q++ P +KIIILDEADSMT
Sbjct: 75 A-YKEGVLELNASDERGIDVVRSKIKSFA-------QKKVTLPPGRHKIIILDEADSMTA 126
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA RF LS+ + R+L I
Sbjct: 127 GAQQALRRTMEIFSNTTRFALACNQSNKIIEPIQSRCAILRFTKLSDAQLMKRLLEILGL 186
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+ + + + L L S+GD+R+AI LQ FG
Sbjct: 187 Q-VQYNEDGLKALIFTSEGDMRQAINNLQSTHSGFG 221
>gi|427781667|gb|JAA56285.1| Putative replication factor c activator 1 2 [Rhipicephalus
pulchellus]
Length = 337
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 140/231 (60%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + ++ EE + L N P+++ GPPG GKTTT L +A L GP
Sbjct: 20 PWVEKYRPVKFTEIVGNEETIARLEVFSREGNVPNVILSGPPGVGKTTTILCLARILLGP 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMTE
Sbjct: 80 A-FREAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPPGKHKIIILDEADSMTE 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA RF L++ + +++L +C
Sbjct: 132 GAQQALRRTMEIYSKTTRFALACNTSDKIIEPIQSRCAVVRFSRLTDAQVLAKLLDVCQR 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L L +QGD+R+AI LQ FG + S+++ V P
Sbjct: 192 ENASYSEDGLEALVFTAQGDMRQAINNLQSTVVGFG-HVNSQNVFKVCDEP 241
>gi|268576228|ref|XP_002643094.1| C. briggsae CBR-RFC-2 protein [Caenorhabditis briggsae]
Length = 328
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 141/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ E +V L + N P+++ GPPG GKTT+ A+A +L G
Sbjct: 11 PWVEKYRPQILADIVGNENIVERLKVIAKEGNVPNIILSGPPGCGKTTSVWALARELLGD 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ K VLELNASD+RGI+VVR +IKTFA Q R P +KIIILDEADSMTE
Sbjct: 71 KV-KDAVLELNASDERGIDVVRNRIKTFA-------QTRVTLPEGRHKIIILDEADSMTE 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L+ + SRV+ +
Sbjct: 123 GAQQALRRTMEIYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLTAAELMSRVVEVAKA 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +N D L + +QGD+R+A+ LQ + + ++++ V P
Sbjct: 183 EDVNHDDGGLEAILFTAQGDMRQALNNLQATVNAY-EQVNKENVLKVCDEP 232
>gi|448524726|ref|XP_003869003.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380353356|emb|CCG22866.1| Rfc4 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 320
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 131/216 (60%), Gaps = 7/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L ++ N P+M+ G PG GKTT+ +A++L G
Sbjct: 8 PWVEKYRPHVLDDIVGNEETIERLKVIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGK 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y LELNASDDRGI+VVR KIK FA Q + P KIIILDEADSMT
Sbjct: 68 EHYHQATLELNASDDRGIDVVRNKIKQFA-------QTKISLPPGRTKIIILDEADSMTP 120
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN S+IIEPL SRCA R+ LS+E + R+L I
Sbjct: 121 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLSDEEVLKRLLDIIKL 180
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + E L L ++GD+R+AI +Q FG
Sbjct: 181 ENVQYNNEGLQALIFSAEGDMRQAINNMQSTVAGFG 216
>gi|225426826|ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [Vitis vinifera]
gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 132/210 (62%), Gaps = 8/210 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L G
Sbjct: 13 PWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLGA 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 73 N-YREAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPSGSHKIVILDEADSMTT 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 125 GAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEA 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
E + E L + + GD+R+A+ LQ
Sbjct: 185 EKVPFVPEGLEAIIFTADGDMRQALNNLQA 214
>gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Komagataella pastoris CBS 7435]
Length = 332
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 151/239 (63%), Gaps = 16/239 (6%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++ PWVEKYRP + V Q + V + ++ PH+LFYGPPGTGKT+T +A+A ++
Sbjct: 10 TNLPWVEKYRPSSLDYVYGQHDTVDTVRKFVQDGRLPHLLFYGPPGTGKTSTIMALAKEI 69
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEA 164
+G Y++ VLELNASDDRGI+VVR +I FA+ +G +K+IILDEA
Sbjct: 70 YGKN-YRNMVLELNASDDRGISVVRDQIVNFASTRQIFSNG----------FKLIILDEA 118
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT AQNALRR +E ++K TRF + NY ++ L SRC +FRF+P+S+E + R+
Sbjct: 119 DAMTNVAQNALRRVIEKFTKNTRFCVLANYAHKLNPALLSRCTRFRFQPISQEAIQLRIN 178
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS---SITSKDLISVSGYP 280
+ +EG+N+D +AL +L +S+GD+R+A+ LQ S +ITS + G P
Sbjct: 179 DVIKQEGINIDDDALQSLLKLSKGDMRKALNVLQACFTGLDSPSQAITSPMIYECVGAP 237
>gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 377
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 145/209 (69%), Gaps = 5/209 (2%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP+ +++V Q ++V + +ET PH+LFYGPPGTGKT+T +A+A +++GP
Sbjct: 55 VEKYRPENLEEVYGQGDIVNTVRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIYGPN- 113
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
YK+ VLELNASDDRGI+VVR +IK+FA+ + Q P +K+IILDEAD+MT A
Sbjct: 114 YKNMVLELNASDDRGIDVVRNQIKSFAS----TRQIFTSASSPQFKLIILDEADAMTSVA 169
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
QN+LRR +E ++K RF + NY ++ L SRC +FRF P+ EE + SR+ ++ +E
Sbjct: 170 QNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRINNVIIKEK 229
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGA 260
+++ +AL+ L +SQGD+RR++ LQ
Sbjct: 230 VDITPDALNALLHLSQGDMRRSLNVLQAC 258
>gi|384501081|gb|EIE91572.1| hypothetical protein RO3G_16283 [Rhizopus delemar RA 99-880]
Length = 343
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 133/209 (63%), Gaps = 8/209 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ EE V L + N P+++ G PG GKTT+ + +AH++ G
Sbjct: 25 PWVEKYRPLYLKDIVGNEEAVSRLMTIAKDGNMPNLILTGMPGIGKTTSIVCLAHEMLGA 84
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+V+R++IKTFA Q++ P +KIIILDEADSMT
Sbjct: 85 S-YKDAVLELNASDDRGIDVIRSRIKTFA-------QKKVTLPPGMHKIIILDEADSMTG 136
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SR A R+ L+ E + R+L IC
Sbjct: 137 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRTAVLRYTKLTNEEVLKRLLEICQM 196
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E +N + E L L + GD+R+AI LQ
Sbjct: 197 EKVNYNDEGLEALIFTADGDMRQAINNLQ 225
>gi|396495754|ref|XP_003844622.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
gi|312221202|emb|CBY01143.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
Length = 409
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 158/264 (59%), Gaps = 20/264 (7%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEV------KRKMAPVLQSSQPWVEKYRP 57
+FG K GK + N P ++ED + + + PVL ++ VEKYRP
Sbjct: 20 SFGGDQKKGKRTAANL----------PIEAEDSLPWYGLSQPVLEPVLMINR--VEKYRP 67
Query: 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117
+ DV ++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VL
Sbjct: 68 NSLDDVEGHQDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVL 127
Query: 118 ELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
ELNASDDRGI+VVR +IKTF++ + + G +K+IILDEAD+MT AQ AL
Sbjct: 128 ELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDTALATFKLIILDEADAMTATAQMAL 187
Query: 176 RRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD 235
RR ME Y+ TRF I NY ++ L SRC +FRF PL ++ + + V + EE +N+
Sbjct: 188 RRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEEENVNIT 247
Query: 236 AEALSTLSSISQGDLRRAITYLQG 259
+A +L S+S+GD+RRA+ LQ
Sbjct: 248 QDATDSLVSLSKGDMRRALNVLQA 271
>gi|389585221|dbj|GAB67952.1| replication factor C3 [Plasmodium cynomolgi strain B]
Length = 344
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 132/209 (63%), Gaps = 5/209 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + +E PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E S VLELNASDDRGI+VVR +IKTFA S K+IILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGISVVRDQIKTFAE----SKNHYNTCEKTSLKLIILDEADHMTY 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNA+RR ME Y+K RF +CNY+++I + SRC FRF PL +E M ++ L I
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMINKALDIAKS 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E ++L + L +L + +GD+RR + LQ
Sbjct: 189 ENVDLTKDGLESLIRVGRGDMRRILNCLQ 217
>gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio]
gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio]
Length = 349
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 142/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 32 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 92 AM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 143
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L +E + R+ + +
Sbjct: 144 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEK 203
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E L++ + L + +QGD+R+A+ LQ FG I S+++ V P
Sbjct: 204 ENLHVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFG-YINSENVFKVCDEP 253
>gi|448312591|ref|ZP_21502333.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445601042|gb|ELY55036.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 152/235 (64%), Gaps = 11/235 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E ++ L N +E + PH++F GP G GKT ++ AI
Sbjct: 11 PTPGKTEVWIEKYRPERLDEIKGHENIIPRLKNYVEQDDLPHIMFAGPAGVGKTASSQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++G + ++ LELNASD RGI+VVR +IK FA + G GY Y+II LD
Sbjct: 71 AREIYGDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYN---YRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+++ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
V I + EG+ + + + L + GD+R+AI LQ AA + G ++ + + +++
Sbjct: 181 VREIADTEGIAVTDDGVDALVYAADGDMRKAINGLQAAA-VMGETVDEETVFAIT 234
>gi|323307063|gb|EGA60346.1| Rfc4p [Saccharomyces cerevisiae FostersO]
Length = 382
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 110/246 (44%), Positives = 142/246 (57%), Gaps = 14/246 (5%)
Query: 18 NFTQKFSTTQSSPEKSEDEVKRK--MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTN 75
N T QS PE ++K+ M+ L PWVEKYRP+ + D+ +E + L
Sbjct: 39 NLIXSIITLQSFPE----DIKKSLIMSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQ 94
Query: 76 TLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135
+ N PHM+ G PG GKTT+ +AH+L G Y VLELNASDDRGI VVR +IK
Sbjct: 95 IAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIXVVRNQIK 153
Query: 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195
FA Q++ P +KI+ILDEADSMT AQ ALRRTME YS TRF F CN
Sbjct: 154 HFA-------QKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 206
Query: 196 SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255
++IIEPL SRCA R+ LS+E + R+L I E + + L + ++GD+R+AI
Sbjct: 207 NKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAIN 266
Query: 256 YLQGAA 261
LQ
Sbjct: 267 NLQSTV 272
>gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis]
Length = 328
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 143/234 (61%), Gaps = 15/234 (6%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW EKYRP+ + ++ +++ + L+ PH+LFYGPPGTGKT+T LAIA +++G
Sbjct: 9 PWSEKYRPRTLDQISAHTDIIDTIRKLLDENQLPHLLFYGPPGTGKTSTILAIAREIYGS 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
L + LELNASDDRGI VVR +I+ FA+ + +K+IILDE D+MT+
Sbjct: 69 SL-GNMTLELNASDDRGIAVVRNEIQDFASTRTIFSNK--------FKLIILDECDAMTK 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ RF ICNY+S+II L SRC +FRF+PL E + R+ +IC +
Sbjct: 120 DAQFALRRVMEKYTRNARFCLICNYVSKIIPALQSRCTRFRFQPLPGEFVKGRLEYICQQ 179
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGG 283
E + + L L + GD+RR + LQ + +++ ++ S Y T G
Sbjct: 180 ESIKVTQGGLEALIELGCGDMRRTLNLLQ------STVMSAGEVTGDSAYATAG 227
>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax Sal-1]
gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
Length = 344
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 132/209 (63%), Gaps = 5/209 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + +E PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E S VLELNASDDRGI+VVR +IKTFA S K+IILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGISVVRDQIKTFAE----SKNHYNTCEKTTLKLIILDEADHMTY 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNA+RR ME Y+K RF +CNY+++I + SRC FRF PL +E M ++ L I
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKS 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E ++L + L +L + +GD+RR + LQ
Sbjct: 189 ENVDLTQDGLESLIRVGRGDMRRILNCLQ 217
>gi|345560437|gb|EGX43562.1| hypothetical protein AOL_s00215g298 [Arthrobotrys oligospora ATCC
24927]
Length = 393
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/269 (41%), Positives = 160/269 (59%), Gaps = 24/269 (8%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPV-LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
FST ++ ++S + PV + S PWVEKYRP+ + DV+ E+++ + +
Sbjct: 19 FSTIEAKGKRSAANL-----PVEVGDSLPWVEKYRPQSLDDVSGHEDILTTINKFIAQNK 73
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASDDRGINVVRTKIKTFA 138
PH+LFYGPPGTGKT+T LA+A +++ + + VLELNASDDRGI+VVR +IKTFA
Sbjct: 74 LPHLLFYGPPGTGKTSTILALARRIYNTKSEAALRHHVLELNASDDRGIDVVREQIKTFA 133
Query: 139 AVAVGSGQRRGGYPCPP---------YKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189
+ + Q P +K+IILDEAD+MT AQNALRR ME Y+ RF
Sbjct: 134 S----TKQIFSSAKLEPSNTTSSIAQFKLIILDEADAMTSTAQNALRRIMEKYTSNVRFC 189
Query: 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249
I NY ++ L SRC +FRF PL + RV H+ + E + +D A+ L +S+GD
Sbjct: 190 IIANYTHKLNAALLSRCTRFRFSPLPIPALRRRVEHVIDSENVRIDDTAVDALLHLSRGD 249
Query: 250 LRRAITYLQGAARLFGSSITSKDLISVSG 278
+RRA+ LQ A GS+ K+ +++SG
Sbjct: 250 MRRALNVLQ--ACFAGSTPLDKNGVALSG 276
>gi|429329431|gb|AFZ81190.1| replication factor C subunit 3, putative [Babesia equi]
Length = 345
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 141/235 (60%), Gaps = 5/235 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ +D+ E+++ L E PH+LF+GPPGTGKT+T +AI+ L+G
Sbjct: 8 PWVEKYRPETFEDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGTGKTSTIMAISRYLYGN 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSM 167
+ VLELNASD+RGI+ VR +IK F+ + + K+IILDEAD M
Sbjct: 68 Q-KNGFVLELNASDERGIDTVREQIKAFSETTNTFSNTSAQDSNIKTTLKLIILDEADQM 126
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQNALRR ME YS RF ICN++++II P+ SRC FRF+PL + + R+ I
Sbjct: 127 TNAAQNALRRIMEIYSSNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDFVRKRIRDIA 186
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDLISVSGYP 280
E L L L TL I QGD+RR + LQ A + G+ I + +++ SG P
Sbjct: 187 EMENLKLSDCGLDTLIQIGQGDMRRVLNCLQVTAMSYSKGNVIDANLILTTSGMP 241
>gi|348041239|ref|NP_001013344.2| replication factor C subunit 2 [Danio rerio]
Length = 353
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 142/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ ++ EE V L N P+++ GPPGTGKTT+ L +A L GP
Sbjct: 36 PWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 95
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 96 AM-KDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPKGRHKIIILDEADSMTD 147
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L +E + R+ + +
Sbjct: 148 GAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEK 207
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E L++ + L + +QGD+R+A+ LQ FG I S+++ V P
Sbjct: 208 ENLHVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFG-YINSENVFKVCDEP 257
>gi|336368487|gb|EGN96830.1| hypothetical protein SERLA73DRAFT_111563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381281|gb|EGO22433.1| hypothetical protein SERLADRAFT_357265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 354
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 10/238 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P+ PWVEKYRP + DV +++ + ++ PH+LFYGPPGTGKT+T LA+
Sbjct: 31 PLDDEMLPWVEKYRPVTLDDVVSHKDITTTIEKFIDKNRLPHLLFYGPPGTGKTSTILAV 90
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++GPE Y+ ++LELNASDDRGI+VVR +IK FA RG +K+IILD
Sbjct: 91 ARRIYGPE-YRKQILELNASDDRGIDVVREQIKQFAETRTLFA--RG------FKLIILD 141
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD MT+ AQ ALRR +E Y+K RF ICNY+++I + SRC +FRF PL + R
Sbjct: 142 EADMMTQQAQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIVEVEKR 201
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ + E + L + L +S+GD+RRA+ LQ + S+ ++ + +G P
Sbjct: 202 IGTVIEAEHVKLTEDGKKALLKLSKGDMRRALNVLQACHAAY-DSVGETEIYNCTGNP 258
>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
Length = 322
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 141/214 (65%), Gaps = 11/214 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+++++V+ QE ++R L + ++ N PH++F GP G GKT A+A+A + F +
Sbjct: 7 WTEKYRPRKLEEVSGQEAIIRNLQSYVKKRNLPHLIFSGPAGVGKTAAAVAMARE-FYDD 65
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ ELNASD+RGI VVR IK FA + +G +KII LDEAD++T+
Sbjct: 66 TWAENFTELNASDERGIEVVRNTIKNFARTMPIGDA---------AFKIIFLDEADALTD 116
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRRTME YS RF CNY S+IIEP+ SRC+ +RFK LS + ++SR +I +
Sbjct: 117 AAQSALRRTMERYSGTCRFILSCNYSSKIIEPIQSRCSVYRFKSLSYDAIASRAKYIADT 176
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
EGL L +AL ++ +S GD+RRAI LQ A+ L
Sbjct: 177 EGLTLSEDALRAINYVSMGDMRRAINALQSASVL 210
>gi|449460473|ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
gi|449494241|ref|XP_004159490.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
Length = 331
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 133/210 (63%), Gaps = 8/210 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 14 PWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSMT
Sbjct: 74 N-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 125
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF L+++ + R++ +
Sbjct: 126 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQA 185
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
E + E L + + GD+R+A+ LQ
Sbjct: 186 EKVPYVPEGLEAIIFTADGDMRQALNNLQA 215
>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
Length = 354
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 141/234 (60%), Gaps = 6/234 (2%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PWVEKYRP + +V E+ L + PH+LFYGPPGTGKT+T LA A ++
Sbjct: 14 NMPWVEKYRPVSLTEVVSHGEITETLMKLINENRLPHLLFYGPPGTGKTSTILAAAKMMY 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPPYKIIILDEADS 166
P+ S VLELNASDDRGI +VR +I FA + S + + P K+I+LDEAD+
Sbjct: 74 APKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLSMDKNQKSMP----KLIVLDEADA 129
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+DAQ+ALRR +E ++ RF ICNY+S+II + SRC + RF PL E + R+ +I
Sbjct: 130 MTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLPNEQILPRLHYI 189
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E L + + + L ++++GD+RR I LQ A F ++ + GYP
Sbjct: 190 VQAESLTITKDGQNALLNLAEGDMRRIINILQSTAMAF-KTVDEWSVYQCVGYP 242
>gi|403217950|emb|CCK72442.1| hypothetical protein KNAG_0K00740 [Kazachstania naganishii CBS
8797]
Length = 319
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 135/217 (62%), Gaps = 7/217 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L+ PWVEKYRP ++ D+ E+ + L ++ N PHM+ G PG GKTT+ +A+
Sbjct: 3 LKLELPWVEKYRPHKLDDIVGNEDTIERLKEIVKDGNMPHMIISGLPGIGKTTSIQCLAN 62
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
++ G +L S VLELNASDDRGI+VVR +IK FA V + P +KI+ILDEA
Sbjct: 63 EMLGEKLLGSAVLELNASDDRGIDVVRNQIKHFAQV-------KCHLPPGKHKIVILDEA 115
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R+L
Sbjct: 116 DSMTSGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLNDEQVLKRLL 175
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
I E + + L + ++GD+R+AI LQ A
Sbjct: 176 QIIKLEDVQYTNDGLEAIIFTAEGDMRQAINNLQSTA 212
>gi|348679159|gb|EGZ18976.1| hypothetical protein PHYSODRAFT_332696 [Phytophthora sojae]
Length = 326
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 142/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + V L + N +++ GPPGTGKTT+ L +A +L G
Sbjct: 8 PWVEKYRPRVLADVVGNRDTVASLQAMAQAGNMTNLILSGPPGTGKTTSILCLARELLGA 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ K VLELNASDDRGI+ VR+KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 68 SM-KQAVLELNASDDRGIDTVRSKIKMFA-------QQKVTLPPGRHKIVILDEADSMTA 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L +E++ R+L +C E
Sbjct: 120 AAQQALRRTMEIFSATTRFALACNNSTKIIEPIQSRCAILRYTRLPDEMLLRRLLTVCQE 179
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + E L+ L ++GD+R A+ LQ A FG ++ +++ V P
Sbjct: 180 EKVGYKEEGLAALIFTAEGDMRNALNNLQATASGFG-FVSDENVFKVCDQP 229
>gi|23271821|gb|AAH23674.1| Rfc5 protein, partial [Mus musculus]
Length = 333
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 148/224 (66%), Gaps = 9/224 (4%)
Query: 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV 116
P+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+ + + S V
Sbjct: 21 PQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMV 80
Query: 117 LELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALR 176
LELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+DAQNALR
Sbjct: 81 LELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQDAQNALR 132
Query: 177 RTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDA 236
R +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ EE +++
Sbjct: 133 RVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISE 192
Query: 237 EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 DGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 235
>gi|302413517|ref|XP_003004591.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
gi|261357167|gb|EEY19595.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
Length = 391
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 135/218 (61%), Gaps = 4/218 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ +++ + ++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPATLADVSGHHDILATINKFVDKNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPPYKIIIL 161
++GPE + VLELNASDDRGI+VVR +IKTFA+ YK+I+L
Sbjct: 99 IYGPENVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTSARSGSGSSSGAAGYKLIVL 158
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 159 DEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEGDIRV 218
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + +EEG+ + +A L +++GD+RRA+ LQ
Sbjct: 219 LVDRVVDEEGVRIRPDATDALVRLAKGDMRRALNVLQA 256
>gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii 17XNL]
gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii]
Length = 344
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 137/225 (60%), Gaps = 5/225 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + +E PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E S VLELNASDDRGI VVR +IKTFA S K+IILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGITVVREQIKTFAE----SKNHYNICERTSLKLIILDEADHMTF 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNA+RR ME Y+K RF ICNY+++I + SRC FRF PL EE M ++ L I
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKS 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
E +NL + +L + +GD+RR + LQ + + + +++I
Sbjct: 189 ENVNLTKNGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVI 233
>gi|254578476|ref|XP_002495224.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
gi|238938114|emb|CAR26291.1| ZYRO0B06248p [Zygosaccharomyces rouxii]
Length = 321
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/228 (47%), Positives = 135/228 (59%), Gaps = 10/228 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P L PWVEKYRPKQ+ D EE + L + N PH++ G PG GKTT+ +
Sbjct: 4 PPLTLELPWVEKYRPKQLSDTVGNEETIHRLQQIAKDGNMPHLIISGLPGIGKTTSIHCL 63
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ +KIIILD
Sbjct: 64 AHELLGDS-YSQGVLELNASDDRGIDVVRNQIKQFA-------QKKCHLEPGKHKIIILD 115
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R
Sbjct: 116 EADSMTAGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKR 175
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
+L I E + + L L ++GD+R+A+ LQ G S+ S
Sbjct: 176 LLEIIKAENVQYTNDGLEALIFTAEGDMRQAVNNLQSTVA--GHSLVS 221
>gi|389625115|ref|XP_003710211.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|351649740|gb|EHA57599.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|440464833|gb|ELQ34198.1| replication factor C subunit 3 [Magnaporthe oryzae Y34]
Length = 404
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 139/231 (60%), Gaps = 17/231 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + ++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 41 EDSLPWVEKYRPVSLADVSGHQDILATVNKFVDANRLPHLLLYGPPGTGKTSTILALARR 100
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-----------------AVGSGQRR 148
++G + + VLELNASDDRGI+VVR +IKTFA+ A S
Sbjct: 101 IYGADNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSTKPAAASSSASTSNNPS 160
Query: 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208
P P YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +
Sbjct: 161 ATRPTPSYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTR 220
Query: 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
FRF PL E + V + EE +N+ +A+ L +++GD+RRA+ LQ
Sbjct: 221 FRFSPLKEADIRVLVDRVVEEETVNIRPDAVDALVRLARGDMRRALNVLQA 271
>gi|91095205|ref|XP_967947.1| PREDICTED: similar to replication factor C subunit 2 [Tribolium
castaneum]
Length = 344
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 141/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ +++ E+ L+ + N P+++ GPPG GKTTT L +A L GP
Sbjct: 27 PWIEKYRPQTFQEIVGNEDTTNRLSVIAKQGNLPNLIIAGPPGVGKTTTILCLARILLGP 86
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDE DSMTE
Sbjct: 87 A-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPPGRHKIIILDEVDSMTE 138
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CNY ++IE + SRCA R+ L++ + +RV+ +C +
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACNYSEKVIEAIQSRCAILRYSRLTDAQVLARVIQVCQQ 198
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L + +QGD+R+A+ LQ FG + S +++ V P
Sbjct: 199 ESVEYTQDGLEAIVFTAQGDMRQALNNLQSTFNGFG-VVNSTNVLKVCDEP 248
>gi|326475565|gb|EGD99574.1| DNA replication factor C subunit Rfc3 [Trichophyton tonsurans CBS
112818]
gi|326483166|gb|EGE07176.1| DNA replication factor C subunit Rfc3 [Trichophyton equinum CBS
127.97]
Length = 397
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 139/211 (65%), Gaps = 1/211 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ + VLELNASDDRGI+VVR +IKTFA+ + S G +K+IILDEAD+MT
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMT 165
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ + V +
Sbjct: 166 SAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIE 225
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+E + + +A+ +L ++S+GD+RRA+ LQ
Sbjct: 226 KEEVQIQPDAVDSLVTLSKGDMRRALNVLQA 256
>gi|225713814|gb|ACO12753.1| Replication factor C subunit 2 [Lepeophtheirus salmonis]
Length = 325
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 142/235 (60%), Gaps = 9/235 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PW+EKYRPK D+ E V LT N P+++ GPPG GKTTT L +A
Sbjct: 7 RETAPWIEKYRPKTFDDIVGNSETVSRLTTFAHDGNAPNIIISGPPGVGKTTTILCLARA 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G +K VLELNAS++ GI+VVR KIK FA Q++ P +KII+LDEAD
Sbjct: 67 LLGSS-FKEAVLELNASNEGGIDVVRNKIKMFA-------QQKVTLPPGRHKIIVLDEAD 118
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMTE AQ ALRRTME YS TRF CN ++IEP+ SRCA R+ LS+ + ++VL
Sbjct: 119 SMTEAAQQALRRTMEIYSDTTRFCLACNASEKVIEPIQSRCAMLRYSKLSDAEILAQVLK 178
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+C +E ++ ++ L + +QGD+R+A+ LQ FG I SK++ V P
Sbjct: 179 VCEKEDISYTSDGLEAIVFTAQGDMRQALNNLQSTHDGFG-QIDSKNVFKVCDEP 232
>gi|403163867|ref|XP_003323926.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164648|gb|EFP79507.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 342
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 130/216 (60%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + + L NCPH++ G PG GKTT+ L +AH L G
Sbjct: 22 PWVEKYRPIILDDITGNTDTIERLKVIARDGNCPHIIISGAPGIGKTTSILCLAHALLG- 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIKTFA V P +KIIILDEADSMT
Sbjct: 81 DAYKEGVLELNASDERGIDVVRNKIKTFANTKVT-------LPAGRHKIIILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ L ++ + R++ I
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACNNSSKIIEPIQSRCAILRYGKLKDQEVLKRLVEIATA 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + L+ L S+GD+R+AI LQ FG
Sbjct: 194 ENVKYAEDGLAALIFTSEGDMRQAINNLQSTVSGFG 229
>gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 333
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 133/210 (63%), Gaps = 8/210 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 16 PWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSMT
Sbjct: 76 N-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTS 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 128 GAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLIIVVQA 187
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
E + E L + + GD+R+A+ LQ
Sbjct: 188 EKVPYVPEGLEAIIFTADGDMRQALNNLQA 217
>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
gi|50400868|sp|Q6L1I0.1|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
Length = 318
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 135/209 (64%), Gaps = 9/209 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ DV ++E + L + ++ + PH++F GP GTGKT+TA+A+ +LFG +
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K LELNASD+RGI+++R IK FA + + G +KII LDEAD +T +
Sbjct: 65 -WKENFLELNASDERGIDIIRNNIKDFAKIR--PSNKLG------FKIIFLDEADQLTNE 115
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME + TRF F CNY S+II P+ SRC RF+PL +E M ++ I E
Sbjct: 116 AQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNE 175
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQG 259
++D ++L + IS GD+R+AI +Q
Sbjct: 176 KFDIDDDSLDAIYEISDGDMRKAINVMQA 204
>gi|401840377|gb|EJT43220.1| RFC4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 323
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 140/235 (59%), Gaps = 15/235 (6%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ +L PWVEKYRPK + D+ +E + L + N PHM+ G P GKTT+
Sbjct: 1 MSKILTLQLPWVEKYRPKVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPSIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KIII
Sbjct: 61 CLAHELLGNS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPQGRHKIII 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E +
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
R+L I E + + L + ++GD+R+AI LQ S++ DL++
Sbjct: 173 KRLLEIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ-------STVAGHDLVN 220
>gi|444320537|ref|XP_004180925.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
gi|387513968|emb|CCH61406.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
Length = 324
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 128/212 (60%), Gaps = 8/212 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK +KD+ E + L N PHM+ G PG GKTT+ +AH+L G
Sbjct: 13 PWVEKYRPKVLKDIVGNNETIDRLQQIALDGNMPHMIISGMPGIGKTTSIHCLAHELLGD 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI VVR +IK FA Q++ P KIIILDEADSMT
Sbjct: 73 S-YKQAVLELNASDDRGIEVVRNQIKHFA-------QKKCHLPPGKNKIIILDEADSMTS 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E + R+L I
Sbjct: 125 GAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYNKLSDEEVLKRLLQIIEL 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
E + + L + ++GD+R+AI LQ
Sbjct: 185 ENVQYTNDGLEAIIFTAEGDMRQAINNLQSTV 216
>gi|270015972|gb|EFA12420.1| replication factor C 40kD subunit [Tribolium castaneum]
Length = 512
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 141/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ +++ E+ L+ + N P+++ GPPG GKTTT L +A L GP
Sbjct: 195 PWIEKYRPQTFQEIVGNEDTTNRLSVIAKQGNLPNLIIAGPPGVGKTTTILCLARILLGP 254
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDE DSMTE
Sbjct: 255 A-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPPGRHKIIILDEVDSMTE 306
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CNY ++IE + SRCA R+ L++ + +RV+ +C +
Sbjct: 307 GAQQALRRTMEIYSNTTRFALACNYSEKVIEAIQSRCAILRYSRLTDAQVLARVIQVCQQ 366
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L + +QGD+R+A+ LQ FG + S +++ V P
Sbjct: 367 ESVEYTQDGLEAIVFTAQGDMRQALNNLQSTFNGFG-VVNSTNVLKVCDEP 416
>gi|303271997|ref|XP_003055360.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
gi|226463334|gb|EEH60612.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
Length = 335
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 141/235 (60%), Gaps = 9/235 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
S+ PWVEKYRP ++ ++ + V L T N P+++F GPPG GKTT+ L +AH
Sbjct: 8 NSTLPWVEKYRPTKIDEIVGNADAVERLAAMAATGNVPNLIFSGPPGIGKTTSILCLAHT 67
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L GP YK VLELNASDDRGI+VVR KIK FA Q++ P +KI++LDEAD
Sbjct: 68 LLGPA-YKDAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVLLDEAD 119
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ A+RRTME YS TRF CN +IIEP+ SRCA RF LS++ + RV+
Sbjct: 120 SMTSAAQQAMRRTMEIYSNTTRFALACNASEKIIEPIQSRCAIVRFTRLSDQEVLERVMK 179
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ +E + + L + + GD+R+A+ LQ FG + +++ V P
Sbjct: 180 VVEKEEVPYVPDGLEAVVFTADGDMRQALNNLQATHSGFG-YVNQENVFKVCDQP 233
>gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina
98AG31]
Length = 346
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 152/257 (59%), Gaps = 29/257 (11%)
Query: 12 GKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVR 71
GK+K+ N + QS EKS+ + + PWVEKYRP +++V ++++
Sbjct: 4 GKSKATN-----ESIQSETEKSQ-----------KDNLPWVEKYRPSTLEEVVSHKDIIY 47
Query: 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVV 130
+ + + PH+LFYGPPGTGKT+T LAIA QL+ P +K+ VLELNASDDRGI VV
Sbjct: 48 TIQKFITSNRLPHLLFYGPPGTGKTSTILAIARQLYQTPMSFKNNVLELNASDDRGIEVV 107
Query: 131 RTKIKTFAA--VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188
R +IK FA+ + SG +K+IILDEAD MT AQ+ALRR +E Y+K RF
Sbjct: 108 REQIKNFASARMVFSSG----------FKLIILDEADQMTTTAQSALRRVIEQYTKNVRF 157
Query: 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248
ICNY++RI + SRC KFRF PL + RV + + E L + + L ++ +G
Sbjct: 158 CIICNYVNRISPAIQSRCTKFRFGPLDLPEVDRRVGQVIDSENLVVTEDGRKALLNLCKG 217
Query: 249 DLRRAITYLQGAARLFG 265
D+RR + +Q +G
Sbjct: 218 DMRRVLNVMQACHSGYG 234
>gi|451994907|gb|EMD87376.1| hypothetical protein COCHEDRAFT_1144919 [Cochliobolus
heterostrophus C5]
Length = 353
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 133/216 (61%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PHM+ G PG GKTT+ L +AHQL G
Sbjct: 30 PWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMIISGMPGIGKTTSILCLAHQLLG- 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P K++ILDEADSMT
Sbjct: 89 DAYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPPGRQKLVILDEADSMTS 141
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++ + R++ IC
Sbjct: 142 GAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQVVRRIMQICEA 201
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + ++ L ++GD+R+AI LQ FG
Sbjct: 202 EDVKYSDDGIAALVFSAEGDMRQAINNLQSTFAGFG 237
>gi|398392868|ref|XP_003849893.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
gi|339469771|gb|EGP84869.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
Length = 460
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 140/218 (64%), Gaps = 4/218 (1%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP + DV ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 44 EDTLPWVEKYRPSSLDDVHGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARR 103
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPC-PPYKIIIL 161
++G + + VLELNASDDRGI+VVR +IKTF++ + GS + YK+IIL
Sbjct: 104 IYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSAQQSTIANYKLIIL 163
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 164 DEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEVDIRQ 223
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EE +N+ +A +L ++S+GD+RRA+ LQ
Sbjct: 224 LVDKVVREEDVNIAPDATDSLVTLSKGDMRRALNVLQA 261
>gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM
2088]
gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM
2088]
Length = 318
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 140/226 (61%), Gaps = 11/226 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + DV +Q+ VV L +E P++LF GP G GKTT ALA+A ++ G E
Sbjct: 5 WTEKYRPKVLDDVVNQKHVVSRLKKYVEKKTLPNLLFAGPAGVGKTTVALALAREILG-E 63
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+ VRT+IK F + + P++I+ LDE D+MT D
Sbjct: 64 YWQQNFLELNASDARGIDTVRTEIKNFCRLRPINA---------PFRIVFLDEVDNMTRD 114
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y++ F CNY S+IIEP+ SRC FRF PL + + R+ +IC +E
Sbjct: 115 AQQALRREMEMYAETATFILSCNYSSKIIEPVQSRCVVFRFLPLKSKDIIKRLKYICEKE 174
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISV 276
++ + +AL + ++GDLR+AI LQ AA L +IT D+ V
Sbjct: 175 NVDYEEKALDAIVYFAEGDLRKAINILQAAAAL-DKTITEDDIYDV 219
>gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H]
gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H]
Length = 344
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 131/209 (62%), Gaps = 5/209 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + ++ PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVQKGELPHLLLHGPPGTGKTSTILAVCKELYG- 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E S VLELNASDDRGI+VVR +IKTFA S K+IILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGISVVRDQIKTFAE----SKNHYNTCEKTALKLIILDEADHMTY 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNA+RR ME Y+K RF +CNY+++I + SRC FRF PL +E M ++ L I
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKS 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + L + L +L + +GD+RR + LQ
Sbjct: 189 ENVELTKDGLDSLIHVGRGDMRRILNCLQ 217
>gi|448315838|ref|ZP_21505477.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
gi|445610597|gb|ELY64367.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
Length = 330
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 150/235 (63%), Gaps = 11/235 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E +V L +E + PH++F GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAVEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+ I EEG+ + + + L + GD+R+AI LQ AA + G + + + +++
Sbjct: 181 IREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAA-VMGEVVDEETVFAIT 234
>gi|171692201|ref|XP_001911025.1| hypothetical protein [Podospora anserina S mat+]
gi|170946049|emb|CAP72850.1| unnamed protein product [Podospora anserina S mat+]
Length = 357
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 134/216 (62%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L N PH++ G PG GKTT+ L +A QL G
Sbjct: 36 PWVEKYRPVFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSVLCLARQLLG- 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 95 DAYKEAVLELNASDERGIDVVRQRIKGFA-------QKKVTLPQGRHKLVILDEADSMTS 147
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R+L I +
Sbjct: 148 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLLQIIDA 207
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
EG+ + L+ L ++GD+R+AI LQ FG
Sbjct: 208 EGVKFSEDGLAALVFSAEGDMRQAINNLQSTWAGFG 243
>gi|357614163|gb|EHJ68945.1| replication factor C subunit 2 [Danaus plexippus]
Length = 349
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 136/219 (62%), Gaps = 8/219 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S PW+EKYRP+ D+ E+ V L T N P+++ GPPG GKTTT L +A L
Sbjct: 30 SHLPWIEKYRPQTFTDIVGNEDTVSRLAVFARTGNAPNIIIAGPPGVGKTTTILCLARVL 89
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
GP +K VLELNAS+DRGI+VVR KIK FA Q++ P +KI+ILDEADS
Sbjct: 90 LGPA-FKDAVLELNASNDRGIDVVRNKIKMFA-------QQKVTLPPGRHKIVILDEADS 141
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+ AQ ALRRTME YS TRF N +IIEP+ SRCA R+ LS+ + ++V+ +
Sbjct: 142 MTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSRCAVLRYTKLSDAQILAKVIEV 201
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
C +E L+ E ++ + +QGDLR A+ LQ A+ F
Sbjct: 202 CEKEDLSYTEEGVNAVVFTAQGDLRAALNNLQSTAQGFA 240
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 147/237 (62%), Gaps = 12/237 (5%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L + PWVEKYRP + DV +++ + ++ PH+LFYGPPGTGKT+T +A+A
Sbjct: 24 LNNDLPWVEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVAR 83
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+L+G YK ++LELNASDDRGI+VVR +IK FA + RG + +K+IILDEA
Sbjct: 84 RLYGAN-YKKQILELNASDDRGIDVVRDQIKGFA-------ETRGVF-AKGFKLIILDEA 134
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D MT+ AQ ALRR +E Y++ RF ICNY+++I + SRC +FRF PL + R+
Sbjct: 135 DMMTQAAQAALRRVIEQYTRNVRFCIICNYVNKITPAIQSRCTRFRFSPLPVSEVEKRLQ 194
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI-SVSGYP 280
+ EG+ + E L +S+GD+RRA+ LQ + IT ++ I + +G P
Sbjct: 195 TVIENEGVKVSPEGKEALLKLSRGDMRRALNVLQACHAAY--DITDEEAIYTCTGNP 249
>gi|397780149|ref|YP_006544622.1| Replication factor C small subunit [Methanoculleus bourgensis MS2]
gi|396938651|emb|CCJ35906.1| Replication factor C small subunit Short=RFC small subunit
[Methanoculleus bourgensis MS2]
Length = 324
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 140/213 (65%), Gaps = 9/213 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+++ ++ Q+++V L + + T N PH+LF G G GKTT A+A+A +LFG
Sbjct: 10 WIEKYRPRRLDEMVGQQDIVVRLQSYVRTGNLPHLLFTGSAGIGKTTAAVALARELFGDS 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ E+NASD+RGI+VVR +IK FA + +G +K++ LDEAD++T D
Sbjct: 70 -WQMNFREMNASDERGIDVVRNQIKEFARTSPLAG--------ATFKVLFLDEADALTTD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTMETY++ RF CNY S+II+P+ SRCA +RF+PL E + + I E
Sbjct: 121 AQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEEITRIAAIE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
GL + AL + ++ GD+R+AI LQGAA L
Sbjct: 181 GLTVTEGALDAIVYVASGDMRKAINALQGAAIL 213
>gi|302916499|ref|XP_003052060.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732999|gb|EEU46347.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 389
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 136/215 (63%), Gaps = 1/215 (0%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP ++DV+ +++ + ++T PH+L YGPPGTGKT+T LA+A +
Sbjct: 40 EDSLPWVEKYRPNTLEDVSGHHDILATINKFVDTNRLPHLLLYGPPGTGKTSTILALARR 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEA 164
++G + VLELNASDDRGI+VVR +IKTFA+ + S +K+I+LDEA
Sbjct: 100 IYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASARAGAGFKLIVLDEA 159
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E + V
Sbjct: 160 DAMTSTAQMALRRIMEKYTVNTRFCIIANYAHKLSPALLSRCTRFRFSPLKEADIRVLVD 219
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ EE + + EA+ L +S+GD+RRA+ LQ
Sbjct: 220 KVVEEEHVKIGGEAVDALVKLSKGDMRRALNVLQA 254
>gi|402590253|gb|EJW84184.1| Rfc4 protein [Wuchereria bancrofti]
Length = 286
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/183 (55%), Positives = 126/183 (68%), Gaps = 2/183 (1%)
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDDRGINVVRTKIK 135
L P++LFYGPPGTGKT+ A+A+ QLF + Y+ RV+E+NASD+RGIN+VR KIK
Sbjct: 7 LHIFQLPNLLFYGPPGTGKTSAAIALCRQLFRNTVTYRDRVMEMNASDERGINIVRNKIK 66
Query: 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195
FA AV S G P K+IILDEAD+MT AQ ALRRTME S+ TRFF ICNYI
Sbjct: 67 EFARRAVSS-HLPDGSPVVGLKVIILDEADAMTTPAQAALRRTMERESRTTRFFLICNYI 125
Query: 196 SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255
+RII+PL SRCAKFRFK +S E R+ IC E + D A+S L + GD+R+++T
Sbjct: 126 TRIIDPLTSRCAKFRFKSISSESQEKRLEWICQNENIEFDPLAISELIELCDGDMRKSVT 185
Query: 256 YLQ 258
LQ
Sbjct: 186 ALQ 188
>gi|452820599|gb|EME27639.1| replication factor C subunit 2/4 [Galdieria sulphuraria]
Length = 321
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 138/232 (59%), Gaps = 8/232 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRPK + +V +VV L + + PH+L GPPG GKTT L +A QL G
Sbjct: 3 EPWVEKYRPKTLDEVVGNPQVVSRLQAVVHGGSLPHLLLSGPPGCGKTTMILCLARQLLG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
E + VLELNASDDRGI+V+R+K+KTFA Q++ P +KI+ILDEADSMT
Sbjct: 63 EEWFSQAVLELNASDDRGIDVIRSKVKTFA-------QQKMSLPSGKHKIVILDEADSMT 115
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
E AQ ALRRTME Y+ TRF CN S+IIEP+ SRCA R + L + ++ R+ +
Sbjct: 116 EGAQQALRRTMEIYATTTRFALACNTPSKIIEPIQSRCAVVRLRRLEDSEIAERLEQVLR 175
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + L + + GD+R A+ Q FG ++ +++ V P
Sbjct: 176 LENVEWENSGLEAILFTADGDMRNALNNAQATVCGFG-KLSQENVFKVCDQP 226
>gi|392571020|gb|EIW64192.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 345
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 133/216 (61%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L NCPH++ G PG GKTT+ +AHQL G
Sbjct: 25 PWVEKYRPQVLDDVVGNTDTIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLG- 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK+FA Q++ P +KI+ILDEADSMT
Sbjct: 84 DGYKEGVLELNASDERGIDVVRNKIKSFA-------QKKVTLPPGRHKIVILDEADSMTA 136
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME Y+ TRF CN ++IIEP+ SRCA R+ L ++ + R+L IC
Sbjct: 137 GAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYSKLRDQEVLKRLLEICEM 196
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + E L L ++GD+R+AI LQ FG
Sbjct: 197 EKVEYSNEGLEALIFTAEGDMRQAINNLQSTWSGFG 232
>gi|424513766|emb|CCO66388.1| replication factor C subunit 2 [Bathycoccus prasinos]
Length = 373
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 144/234 (61%), Gaps = 9/234 (3%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
++QPW+EK+RP ++ D+ EE + + +ET + P++L GPPG GKTT+ +A L
Sbjct: 22 ANQPWIEKWRPTKLDDIVGHEETLNQMRGMIETGSMPNLLLSGPPGCGKTTSVHVLARTL 81
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
G + YK VLELNASD+RGI+VVR KIK FA Q++ P KIIILDEAD+
Sbjct: 82 LG-DRYKDAVLELNASDERGIDVVRNKIKMFA-------QKKVTLPAGRCKIIILDEADA 133
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT+ AQ A+RRTME YS TRF CN +IIEP+ SRCA RF LS++ + R++++
Sbjct: 134 MTKGAQQAMRRTMEIYSATTRFALACNLSDKIIEPIQSRCAIVRFSRLSDKQVLERLVYV 193
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
C +E + DA L + ++GD+R A+ LQ F + +++ V P
Sbjct: 194 CEQEKVPHDARGLEAIVFCAEGDMRNALNSLQACHSGF-QMVNQENVFRVCDTP 246
>gi|327301329|ref|XP_003235357.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326462709|gb|EGD88162.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 397
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 138/211 (65%), Gaps = 1/211 (0%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGS 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ + VLELNASDDRGI+VVR +IKTFA+ + S G +K+IILDEAD+MT
Sbjct: 106 KNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMT 165
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E+ + V +
Sbjct: 166 SAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIE 225
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+E + + +A+ +L +S+GD+RRA+ LQ
Sbjct: 226 KEEVQIQPDAIDSLVKLSKGDMRRALNVLQA 256
>gi|449548327|gb|EMD39294.1| hypothetical protein CERSUDRAFT_152406 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 135/210 (64%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 40 PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGS 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E Y+ ++LELNASDDRGI+VVR +IK FA + R + +K+IILDEAD MT
Sbjct: 100 E-YRKQILELNASDDRGIDVVREQIKNFA-------ETRTLF-SKGFKLIILDEADMMTT 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++I+ + SRC +FRF PL + R+ +
Sbjct: 151 AAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPISEVEKRLQKVIES 210
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EG+ L + L +S+GD+RRA+ LQ
Sbjct: 211 EGVKLTDDGKKALLKLSKGDMRRALNVLQA 240
>gi|448388975|ref|ZP_21565470.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
gi|445669262|gb|ELZ21874.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
Length = 330
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 150/236 (63%), Gaps = 11/236 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E +V L +E + PH++F GP GTGKTT A AI
Sbjct: 11 PTPGRTEVWIEKYRPERLDEIKGHENIVPRLQRYVERDDLPHLMFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
V I EG+ + + + L + GD+R+AI LQ AA + G ++ + + +++
Sbjct: 181 VREIAENEGIEVTDDGVDALVYAADGDMRKAINGLQAAA-VMGETVDEETVFAITA 235
>gi|321261085|ref|XP_003195262.1| subunit of heteropentameric Replication factor C (RF-C); Rfc3p
[Cryptococcus gattii WM276]
gi|317461735|gb|ADV23475.1| Subunit of heteropentameric Replication factor C (RF-C), putative;
Rfc3p [Cryptococcus gattii WM276]
Length = 347
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 133/216 (61%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + V L E N PH++ G PG GKTT+ +AH L G
Sbjct: 27 PWVEKYRPVLLDDIVGNSDTVERLKVIAEDGNLPHIIISGMPGIGKTTSIHCLAHALLG- 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK+FA QR+ P +KIIILDEADSMT
Sbjct: 86 EAYKEGVLELNASDERGIDVVRNKIKSFA-------QRKVTLPPGRHKIIILDEADSMTA 138
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L++ + R+ IC+
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDM 198
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + E L+ L ++GD+R+AI LQ FG
Sbjct: 199 ESVKYNDEGLAALIFTAEGDMRQAINNLQSTWSGFG 234
>gi|392574508|gb|EIW67644.1| hypothetical protein TREMEDRAFT_69661 [Tremella mesenterica DSM
1558]
Length = 350
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/208 (45%), Positives = 138/208 (66%), Gaps = 9/208 (4%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP + +V +++ + +E PH+L YGPPGTGKT+T LA+A +L+GP
Sbjct: 33 VEKYRPNTLDEVVSHQDITNTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPP- 91
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
Y+ +LELNASDDRGI+VVR +IK+FA V + +K++ILDEAD MT+ A
Sbjct: 92 YQKHILELNASDDRGIDVVRDQIKSFAMTKVLFSK--------GFKLVILDEADMMTQAA 143
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
Q+ALRR +ET++K RF +CNY+++I + SRC +FRF PL E+ + +V + +EG
Sbjct: 144 QSALRRVIETHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEVQRKVDDVVEKEG 203
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQG 259
+NL + + L +S+GD+RRA+ LQ
Sbjct: 204 VNLTDDGRAALLKLSKGDMRRALNVLQA 231
>gi|402080324|gb|EJT75469.1| replication factor C subunit 3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 410
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 141/237 (59%), Gaps = 23/237 (9%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQR---------------- 147
++G + + VLELNASDDRGI+VVR +IKTFA+ G R
Sbjct: 99 IYGADNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGPRNTAAAAAAAPSSSSSS 158
Query: 148 -----RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
R G YK+IILDEAD+MT AQ ALRR ME Y+ TRF I NY ++ L
Sbjct: 159 APSAARTGSTMALYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPAL 218
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
SRC +FRF PL E + V + +EE +N+ EA+ L +S+GD+RRA+ LQ
Sbjct: 219 LSRCTRFRFSPLKEADIRVLVDRVVDEESVNVVPEAVDALVRLSRGDMRRALNVLQA 275
>gi|383620026|ref|ZP_09946432.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|448696276|ref|ZP_21697837.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|445783964|gb|EMA34788.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
Length = 330
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 150/235 (63%), Gaps = 11/235 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E +V L +E + PH++F GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREIYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+++ ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDATEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
V I EEG+ + + + L + GD+R+AI LQ AA + G ++ + + +++
Sbjct: 181 VREIAAEEGIEVTDDGVDALVFAADGDMRKAINGLQAAA-VMGETVDEETVFAIT 234
>gi|325958394|ref|YP_004289860.1| replication factor C small subunit [Methanobacterium sp. AL-21]
gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
Length = 347
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 139/213 (65%), Gaps = 12/213 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V QE + L ++ N P+++F GP G GKTTT++A+A ++ G
Sbjct: 30 PWVEKYRPQTLDEVVGQEHTILRLKRYVKEGNMPNLMFTGPAGVGKTTTSIALAKEMLG- 88
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD RGI+ VR IK+F + AVGS P++II LDE D+MT
Sbjct: 89 EYWRQNFLELNASDARGIDTVRNDIKSFCRLKAVGS----------PFRIIFLDEVDNMT 138
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRR ME Y+K + F CNY S+II+P+ SRCA FRF P+ + R+ +I
Sbjct: 139 KDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFVPVKGHQIIKRLEYIAQ 198
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EGL +D A+ ++ ++GD+RRA+ LQ ++
Sbjct: 199 AEGLKIDIAAIESIVYFAEGDMRRAVNILQASS 231
>gi|146161442|ref|XP_001007155.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila]
gi|146146775|gb|EAR86910.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila
SB210]
Length = 345
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 135/221 (61%), Gaps = 16/221 (7%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-TANCPHMLFYGPPGTGKTTTALAIAH 104
Q + PWVEKYRP+ + +V E +V + +E P++LFYGPPGTGKT+ +A+A
Sbjct: 15 QQNIPWVEKYRPENLDNVISHEYIVATIKKFIEEDKKLPNLLFYGPPGTGKTSLIVALAK 74
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA----VGSGQRRGGYPCPPYKIII 160
QL+G YK VLELNASDDRGI+VVR +IKTFA+ A VG G K+II
Sbjct: 75 QLYGKN-YKQLVLELNASDDRGIDVVREQIKTFASTANFGMVGKGT----------KLII 123
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRR +E YS RF ICNY+S+II L SRC +F+FK + +
Sbjct: 124 LDEADSMTNQAQFALRRIIEKYSSNARFCMICNYVSKIIPALQSRCTRFKFKHIPYQDAK 183
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
R+ ICN E L + + + GD+RR + LQ +
Sbjct: 184 LRIAQICNAENLKYKNSGIEAVFKLCDGDMRRVVNMLQSLS 224
>gi|403415842|emb|CCM02542.1| predicted protein [Fibroporia radiculosa]
Length = 358
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 136/215 (63%), Gaps = 9/215 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 40 PWVEKYRPVSMDDIVSHKDITSTIEKFIEKNQLPHLLFYGPPGTGKTSTILAVARRIYGN 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ ++LELNASDDRGI+VVR +IK FA + R + YK+IILDEAD MT
Sbjct: 100 D-YRKQILELNASDDRGIDVVREQIKNFA-------ETRTLF-LKGYKLIILDEADMMTT 150
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + R+ +
Sbjct: 151 AAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVERRLNSVIEA 210
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
EG+ L + L +S+GD+RRA+ LQ F
Sbjct: 211 EGVKLTEDGKKALLKLSKGDMRRALNVLQACHAAF 245
>gi|58269654|ref|XP_571983.1| Activator 1 40 kDa subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114003|ref|XP_774249.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256884|gb|EAL19602.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228219|gb|AAW44676.1| Activator 1 40 kDa subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 347
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 133/216 (61%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + V L E N PH++ G PG GKTT+ +AH L G
Sbjct: 27 PWVEKYRPVLLDDIVGNSDTVDRLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLG- 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK+FA QR+ P +KIIILDEADSMT
Sbjct: 86 EAYKEGVLELNASDERGIDVVRNKIKSFA-------QRKVTLPPGRHKIIILDEADSMTA 138
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L++ + R+ IC+
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDM 198
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + E L+ L ++GD+R+AI LQ FG
Sbjct: 199 ESIKHNDEGLAALIFTAEGDMRQAINNLQSTWSGFG 234
>gi|405121785|gb|AFR96553.1| activator 1 40 kDa subunit [Cryptococcus neoformans var. grubii
H99]
Length = 347
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 133/216 (61%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ + + L E N PH++ G PG GKTT+ +AH L G
Sbjct: 27 PWVEKYRPVLLDDIVGNSDTIDRLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLG- 85
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR KIK+FA QR+ P +KIIILDEADSMT
Sbjct: 86 EAYKEGVLELNASDERGIDVVRNKIKSFA-------QRKVTLPPGRHKIIILDEADSMTA 138
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L++ + R+ IC+
Sbjct: 139 GAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDM 198
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + E L+ L ++GD+R+AI LQ FG
Sbjct: 199 ESIKYNDEGLAALIFTAEGDMRQAINNLQSTWSGFG 234
>gi|351711981|gb|EHB14900.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 293
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 118/162 (72%), Gaps = 6/162 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKY PK V +VA QE VV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYCPKCVDEVAFQEVVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++SRV ELNASD+RGI VVR K+K FA +A+ SG R G PCP +K
Sbjct: 88 ILAAARELFGPELFRSRVFELNASDERGIQVVREKVKKFAQLAI-SGSRSDGKPCPSFKT 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
+ILDEADSMT AQ ALR TME K TRF+ ICN ++E
Sbjct: 147 VILDEADSMTSVAQVALRHTMEKELKTTRFYLICNCRKEVME 188
>gi|443732297|gb|ELU17070.1| hypothetical protein CAPTEDRAFT_192756 [Capitella teleta]
Length = 340
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 145/239 (60%), Gaps = 9/239 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
AP + + VEK+RP ++DV EE + L E N P+++ GPPGTGKTT+ L
Sbjct: 11 APSVTPAMTMVEKFRPILLRDVVGNEETISRLQVFAEQGNVPNLIIAGPPGTGKTTSILC 70
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
++ L G YK VLELNAS+DRGI+VVR KIK FA Q++ P +K+IIL
Sbjct: 71 LSRALLGAS-YKDAVLELNASNDRGIDVVRNKIKMFA-------QKKVSLPAGRHKVIIL 122
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT+ AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ LS+ +
Sbjct: 123 DEADSMTDGAQQALRRTMEIYSKTTRFALACNSSDKIIEPIQSRCAVLRYSKLSDAQLLE 182
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
R+ +C +E ++ + + + SQGD+R+A+ LQ + FG + S+++ V P
Sbjct: 183 RLQEVCMKESVSYTEDGMEAVIFTSQGDMRQALNNLQSTCQGFG-HVNSENVFKVCDEP 240
>gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris
E1-9c]
gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c]
Length = 326
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 143/223 (64%), Gaps = 15/223 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+E+YRP ++ D+ Q+E+ L + ++ + PH+LF G G GKTT A+A+A + FG E
Sbjct: 9 WIERYRPTRLADIVGQDEITERLISYVKGRSLPHLLFTGSAGIGKTTAAVALAREFFG-E 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ E+NASD+RGI+VVR +IK FA R +KI+ LDEAD++T D
Sbjct: 68 AWHINFREMNASDERGIDVVRNQIKQFA--------RTSPLEGAEFKILFLDEADALTTD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTMETYS+ RF CNY S+II+P+ SRCA +RF+PL+ E +S + I +E
Sbjct: 120 AQAALRRTMETYSRGCRFILSCNYSSKIIDPIQSRCAIYRFRPLTPEAISEEIGKIAGKE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
G+ + +A+ + I+QGD+R+AI LQGA SI SK +
Sbjct: 180 GITVTPDAIEAIVYIAQGDMRKAINALQGA------SIVSKSI 216
>gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|374107881|gb|AEY96788.1| FAEL196Wp [Ashbya gossypii FDAG1]
Length = 333
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 138/211 (65%), Gaps = 9/211 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP + DV Q +VV + ++ PH+LFYGPPGTGKT+T A+A +++G
Sbjct: 12 PWIEKYRPDSLDDVYGQRDVVETVRKFVQEGRLPHLLFYGPPGTGKTSTICALAKEIYGK 71
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y++ VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 72 N-YRNMVLELNASDDRGIDVVRNQIKEFAST-------RQIF-SKGFKLIILDEADAMTS 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL+E + RVL I
Sbjct: 123 AAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLAEAAIERRVLSIMAH 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
E L L +A + L ++ GD+RRA+ LQ A
Sbjct: 183 EHLQLTEDARAALLRLAAGDMRRALNVLQAA 213
>gi|390600120|gb|EIN09515.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 354
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 143/231 (61%), Gaps = 10/231 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + N ++ PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 37 PWVEKYRPVTLDDVVSHKDITCTIENFIQKNRLPHLLFYGPPGTGKTSTILAVARRIYGD 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ ++ ++LELNASDDRGI+VVR +IK FA + YK+IILDEAD MT+
Sbjct: 97 D-FRKQILELNASDDRGIDVVREQIKQFAETRTLFSK--------GYKLIILDEADMMTQ 147
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++I + SRC +FRF PL + RV + +
Sbjct: 148 AAQAALRRVIEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPIPEVERRVQTVVDA 207
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EG+ L + L +S+GD+RRA+ LQ + I ++ + +G P
Sbjct: 208 EGVQLREDGKKALLKLSKGDMRRALNVLQACHAAY-DEIGETEIYNCTGNP 257
>gi|332016496|gb|EGI57389.1| Replication factor C subunit 2 [Acromyrmex echinatior]
Length = 355
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 149/251 (59%), Gaps = 9/251 (3%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S VK K ++ PW+EKYRP+ D+ E+ V L+ + N P+++ G
Sbjct: 21 PSTSNSNVKIKEKDGKSANLPWIEKYRPQVFSDIVGNEDTVSRLSVFAQHGNTPNIIIAG 80
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 81 PPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMFA-------QKKV 132
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KIIILDEADSMT+ AQ ALRRTME YS TRF CN IIEP+ SRCA
Sbjct: 133 NLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACNNTEEIIEPIQSRCAML 192
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
R+ L++ + ++VL +C +E ++ + + + +QGD+R+A+ LQ F + +
Sbjct: 193 RYGKLTDAEVLAKVLEVCEKENVSYTDDGMEAIIFTAQGDMRQALNNLQSTYNGF-NHVN 251
Query: 270 SKDLISVSGYP 280
++++ V P
Sbjct: 252 AENVFKVCDEP 262
>gi|448304145|ref|ZP_21494089.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
gi|445591898|gb|ELY46094.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
Length = 329
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 150/235 (63%), Gaps = 11/235 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E +V L +E + PH++F GP GTGKTT A +I
Sbjct: 11 PTPGKTEVWIEKYRPERLDEIKGHENIVPRLQRYIEQDDLPHLMFAGPAGTGKTTAAQSI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF LSE+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSEDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
+ I EG+ + + + L + GD+R+AI LQ AA + G ++ + + +++
Sbjct: 181 IREIAEIEGITVTDDGIDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAIT 234
>gi|367014065|ref|XP_003681532.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
gi|359749193|emb|CCE92321.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
Length = 336
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 135/215 (62%), Gaps = 9/215 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L PWVEKYRP + DV Q EVV + +E PH+LFYGPPGTGKT+T +A+A
Sbjct: 7 LNDGLPWVEKYRPATLDDVYGQNEVVGTVRRFIEEGQLPHLLFYGPPGTGKTSTVVALAR 66
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
+++G Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEA
Sbjct: 67 EIYGKN-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIFS-KGFKLIILDEA 117
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL E + R+
Sbjct: 118 DAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTEALERRMN 177
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ + E L + A L +S+GD+RR + LQ
Sbjct: 178 KVLSNEHLKMTTSAKEALLKLSRGDMRRVLNVLQA 212
>gi|255082558|ref|XP_002504265.1| predicted protein [Micromonas sp. RCC299]
gi|226519533|gb|ACO65523.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 137/215 (63%), Gaps = 8/215 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ +Q WVEKYRP ++ DVA ++++ + P++L YGPPGTGKT+T LA+A +
Sbjct: 28 KKNQMWVEKYRPSKLSDVAAHKDIIDTIGRLTSQDRLPYLLLYGPPGTGKTSTILAVAKE 87
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L+GP+ + LELNASDDRGI+VVR +I FA S R G +K+IILDE D
Sbjct: 88 LYGPQ-FSQMTLELNASDDRGIDVVRNEISAFA-----STMRFGSNAG--FKLIILDECD 139
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT+DAQ ALRR +E Y+K TRF I NY+S++I L SRC +FRF PL + RV
Sbjct: 140 SMTKDAQFALRRIIEKYTKHTRFCLIGNYVSKVIPALQSRCTRFRFSPLGPNAVKDRVQF 199
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
+ +E L + +A+ ++ + GD+RR + LQ +
Sbjct: 200 VVRQENLQITDDAIDAVTRLGAGDMRRTLNILQSS 234
>gi|336377010|gb|EGO05345.1| hypothetical protein SERLA73DRAFT_174456 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390053|gb|EGO31196.1| hypothetical protein SERLADRAFT_455984 [Serpula lacrymans var.
lacrymans S7.9]
Length = 343
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 140/231 (60%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + DV + + L + NCPH++ G PG GKTT+ +AHQL G
Sbjct: 23 PWVEKYRPQNLDDVVGNVDTIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLG- 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ YK VLELNASD+RGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGIDVVRNKIKAFA-------QKKVTLPPARHKIVILDEADSMTP 134
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF CN ++IIEP+ SRCA R+ L + + R+L IC
Sbjct: 135 GAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICEM 194
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + + + L+ L +GD+R+AI LQ FG ++ +++ V P
Sbjct: 195 EKVEYNDDGLTALIFTCEGDMRQAINNLQSTHSGFG-FVSGENVFKVCDQP 244
>gi|392565350|gb|EIW58527.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 353
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 135/218 (61%), Gaps = 9/218 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV ++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 35 PWVEKYRPVTLDDVVSHHDITSTIVKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGN 94
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ ++LELNASDDRGI+VVR +IK FA + +K+IILDEAD MT
Sbjct: 95 D-YRKQILELNASDDRGIDVVREQIKNFAETRTLFAK--------GFKLIILDEADMMTT 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ+ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + R+ +
Sbjct: 146 AAQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVEKRLNSVIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
EG+ L + L +S+GD+RRA+ LQ + S
Sbjct: 206 EGVKLTEDGKKALLKLSKGDMRRALNVLQACHAAYDRS 243
>gi|388504120|gb|AFK40126.1| unknown [Medicago truncatula]
Length = 333
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 132/210 (62%), Gaps = 8/210 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 16 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSMT
Sbjct: 76 N-YREAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTS 127
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 128 GAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQA 187
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
E + E L + + GD+R+ + LQ
Sbjct: 188 EKVPYVPEGLEAIIFTADGDMRQGLNNLQA 217
>gi|324500315|gb|ADY40152.1| Replication factor C subunit 2 [Ascaris suum]
Length = 364
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 145/233 (62%), Gaps = 9/233 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRP++++DV + ++ L + N P+++ GPPG GKTT+ A+A +L
Sbjct: 45 SIPWLEKYRPQKLQDVVGNKLAIQRLGMFAKQGNLPNIVISGPPGCGKTTSIWALARELL 104
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G ++ + LELNASDDRGI+VVR KIK+FA V + R +KIIILDEADSM
Sbjct: 105 GTQI-REACLELNASDDRGIDVVRNKIKSFAQTKVSLPEGR-------HKIIILDEADSM 156
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TE AQ ALRRTME YSK TRF CN +IIEP+ SRCA RF L +E +++R+L +C
Sbjct: 157 TEGAQQALRRTMEIYSKTTRFALSCNQSDKIIEPIQSRCAILRFSKLKDEEIATRLLQVC 216
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + D + L +QGD+R+A+ LQ F +T+ ++ V P
Sbjct: 217 TYEQVVYDESGIDALIFTAQGDMRQALNNLQCTVAGF-KQVTADNVFKVCDEP 268
>gi|294893510|ref|XP_002774508.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239879901|gb|EER06324.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 514
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 144/238 (60%), Gaps = 14/238 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E ++ L E + P++L GPPG GKTT+ + +A L G
Sbjct: 16 PWVEKYRPISLSDVVGNEPAMQRLRAMAEDRHMPNLLLSGPPGCGKTTSVMCLARALLGE 75
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFA----AVAVGSGQRRGGYPCPPYKIIILDEAD 165
+L K+ VLELNASDDRGI+VVR +IKTFA ++ G Q+ KI+ILDEAD
Sbjct: 76 DLVKTAVLELNASDDRGIDVVRNRIKTFAQQKISLPAGGCQQ---------KIVILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMTE AQ A+RRTME +S TRF CN ++IIEP+ SRCA RF L + + ++V
Sbjct: 127 SMTEAAQQAMRRTMEIHSATTRFALACNQSTKIIEPIQSRCAIVRFSRLKDSDIEAQVKK 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGG 283
+ + EG+ L + L L ++GD+R A+ LQ A FG +T +++ V P G
Sbjct: 187 VADMEGVQLRGDGLEALIFTAEGDMRAALNNLQSTATGFG-VVTRENVFKVCDQPQPG 243
>gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
gi|150415672|sp|A3CUX9.1|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
Length = 322
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 140/213 (65%), Gaps = 9/213 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+++ ++ Q+++V L + ++T N PH+LF G G GKTT A+A+A + FG
Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDS 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+++ E+NASD+RGI+VVR +IK FA + +G +KI+ LDEAD++T D
Sbjct: 68 -WQTNFREMNASDERGIDVVRNQIKEFARTSPLAG--------ATFKILFLDEADALTTD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTMETY++ RF CNY S+II+P+ SRCA +RF+PL E + I E
Sbjct: 119 AQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAE 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
GL + AL + ++ GD+R+AI LQGAA L
Sbjct: 179 GLTVTEGALDAIVYVASGDMRKAINALQGAAIL 211
>gi|365758856|gb|EHN00681.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 136/209 (65%), Gaps = 9/209 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGR 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL +E + R+ ++
Sbjct: 125 AAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVR 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E L L EA L +S GD+RR + LQ
Sbjct: 185 EKLKLSPEAEKALIELSNGDMRRVLNVLQ 213
>gi|307179094|gb|EFN67566.1| Replication factor C subunit 2 [Camponotus floridanus]
Length = 349
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 147/251 (58%), Gaps = 9/251 (3%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
P S ++K K + PW+EKYRP+ D+ E+ V L + N P+++ G
Sbjct: 17 PSTSNSDMKIKEKDSKSQNLPWIEKYRPQVFSDIVGNEDTVSRLAVFAQHGNTPNIIIAG 76
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT L +A L GP +K VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 77 PPGVGKTTTILCLARILLGPA-FKEAVLELNASNERGIDVVRNKIKMFA-------QKKV 128
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KIIILDEADSMT+ AQ ALRRTME YS TRF CN IIEP+ SRCA
Sbjct: 129 NLPKGKHKIIILDEADSMTDGAQQALRRTMEIYSHTTRFALACNNTEEIIEPIQSRCAML 188
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
R+ L++ + ++VL +C +E L+ + + + +QGD+R+A+ LQ F + +
Sbjct: 189 RYGKLTDAQILAKVLEVCEKEKLSYTDDGMEAIVFTAQGDMRQALNNLQSTYNGF-NHVN 247
Query: 270 SKDLISVSGYP 280
+++ V P
Sbjct: 248 GENVFKVCDEP 258
>gi|448115886|ref|XP_004202928.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359383796|emb|CCE79712.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 141/210 (67%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + +V Q ++V + + PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 11 PWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAKEIYGS 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y++ VLELNASDDRGI+VVR +IK FA+ + +K+IILDEAD+MT
Sbjct: 71 N-YRNMVLELNASDDRGIDVVRNQIKEFASTMQIFSK--------GFKLIILDEADAMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQN+LRR +E Y+K TRF + NY ++ L SRC +FRF P+S+E +++ + + +
Sbjct: 122 TAQNSLRRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITK 181
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
E L + ++A+ +L ++++GD+R+A+ LQ
Sbjct: 182 EKLKISSDAIESLCTLARGDMRKALNVLQA 211
>gi|323303129|gb|EGA56931.1| Rfc4p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 133/218 (61%), Gaps = 8/218 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E +
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
R+L I E + + L + ++GD+R+AI LQ
Sbjct: 173 KRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210
>gi|401839265|gb|EJT42559.1| RFC3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 340
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 136/209 (65%), Gaps = 9/209 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGR 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL +E + R+ ++
Sbjct: 125 AAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVR 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E L L EA L +S GD+RR + LQ
Sbjct: 185 EKLKLSPEAEKALIELSNGDMRRVLNVLQ 213
>gi|224074887|ref|XP_002304476.1| predicted protein [Populus trichocarpa]
gi|222841908|gb|EEE79455.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 132/210 (62%), Gaps = 8/210 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V D+ ++ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 13 PWVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 72
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
K VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 73 N-SKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGQHKIVILDEADSMTS 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 125 GAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVGA 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
E + E L + + GD+R+A+ LQ
Sbjct: 185 EQVPYVPEGLEAIIFTADGDMRQALNNLQA 214
>gi|190407255|gb|EDV10522.1| replication factor C subunit 4 [Saccharomyces cerevisiae RM11-1a]
Length = 323
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 133/218 (61%), Gaps = 8/218 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E +
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
R+L I E + + L + ++GD+R+AI LQ
Sbjct: 173 KRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210
>gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7]
gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum]
gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7]
Length = 344
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 130/209 (62%), Gaps = 5/209 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ E+V+ + ++ PH+L +GPPGTGKT+T LA+ +L+G
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ S VLELNASDDRGINV+R +IKTFA S K+IILDEAD MT
Sbjct: 74 K-RSSFVLELNASDDRGINVIRDQIKTFAE----SKNHYTTCEKTTLKLIILDEADHMTY 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNA+RR ME Y+K RF +CNY+++I + SRC FRF PL +E M ++ L I
Sbjct: 129 PAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKS 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E +NL + +L + GD+RR + LQ
Sbjct: 189 ENVNLTEGGIDSLIRVGHGDMRRILNCLQ 217
>gi|6324478|ref|NP_014547.1| replication factor C subunit 4 [Saccharomyces cerevisiae S288c]
gi|730503|sp|P40339.1|RFC4_YEAST RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4; AltName: Full=Activator 1 37 kDa subunit
gi|499704|gb|AAA34970.1| 37 kDa subunit [Saccharomyces cerevisiae]
gi|600464|emb|CAA58185.1| orf 00923 [Saccharomyces cerevisiae]
gi|841468|gb|AAC49063.1| Rfc4p [Saccharomyces cerevisiae]
gi|1419942|emb|CAA99106.1| RFC4 [Saccharomyces cerevisiae]
gi|151945540|gb|EDN63781.1| replication factor C subunit 4 [Saccharomyces cerevisiae YJM789]
gi|207341418|gb|EDZ69479.1| YOL094Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271406|gb|EEU06467.1| Rfc4p [Saccharomyces cerevisiae JAY291]
gi|259149392|emb|CAY86196.1| Rfc4p [Saccharomyces cerevisiae EC1118]
gi|285814797|tpg|DAA10690.1| TPA: replication factor C subunit 4 [Saccharomyces cerevisiae
S288c]
gi|323335629|gb|EGA76912.1| Rfc4p [Saccharomyces cerevisiae Vin13]
gi|323346696|gb|EGA80980.1| Rfc4p [Saccharomyces cerevisiae Lalvin QA23]
gi|349581076|dbj|GAA26234.1| K7_Rfc4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763163|gb|EHN04693.1| Rfc4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296734|gb|EIW07836.1| Rfc4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 323
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 133/218 (61%), Gaps = 8/218 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E +
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
R+L I E + + L + ++GD+R+AI LQ
Sbjct: 173 KRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210
>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
Length = 350
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 143/231 (61%), Gaps = 10/231 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 32 PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGK 91
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ ++LELNASDDRGI+VVR +IK FA + R + YK+IILDEAD MT
Sbjct: 92 D-YRKQILELNASDDRGIDVVREQIKNFA-------ETRTLF-LKGYKLIILDEADMMTT 142
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + R+ +
Sbjct: 143 AAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVERRLSGVIEA 202
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EG+ L + L +S+GD+RRA+ LQ + I ++ + +G P
Sbjct: 203 EGVKLTEDGKKALLKLSKGDMRRALNVLQACHAAY-DLIGEDEIYNCTGNP 252
>gi|159484076|ref|XP_001700086.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
gi|158272582|gb|EDO98380.1| DNA replication factor C complex subunit 2 [Chlamydomonas
reinhardtii]
Length = 340
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 142/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ + ++ E V L E N P+++ GPPGTGKTT+ L +AHQL GP
Sbjct: 24 PWLEKYRPQFINEIVGNTEAVARLQVIAEEGNMPNVILSGPPGTGKTTSILCLAHQLLGP 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 84 N-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTA 135
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ + +E + +R+ + +
Sbjct: 136 GAQQALRRTMEIYSGTTRFALACNMSSKIIEPIQSRCAIVRYTRIPDEDILARMRLVAEK 195
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EG+ + + + + GD+R+A+ +Q FG I+ +++ V P
Sbjct: 196 EGVTYNDAGMEAVIFTADGDMRQALNNMQATHSGFG-FISQENVFKVCDQP 245
>gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 140/221 (63%), Gaps = 11/221 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP ++DV+ +V+ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 42 EDNMPWVEKYRPNSLEDVSGHHDVIGTINTFIDSNRLPHLLLYGPPGTGKTSTILALARR 101
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-------VGSGQRRGGYPCPPYKI 158
++G + + VLELNASDDRGI+VVR +IKTFA+ V + G +K+
Sbjct: 102 IYGAKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPVAKSESSLG----AFKL 157
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
IILDEAD+MT AQ ALRR ME Y+ RF I NY ++ L SRC +FRF PL E+
Sbjct: 158 IILDEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKD 217
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ + V + +E + + EA+ +L +S+GD+RRA+ LQ
Sbjct: 218 IRALVNQVIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQA 258
>gi|448113261|ref|XP_004202306.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359465295|emb|CCE89000.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 140/210 (66%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + +V Q ++V + + PH+LFYGPPGTGKT+T A+A +++G
Sbjct: 11 PWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTITALAKEIYGS 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y++ VLELNASDDRGI+VVR +IK FA+ + +K+IILDEAD+MT
Sbjct: 71 N-YRNMVLELNASDDRGIDVVRNQIKEFASTMQIFSK--------GFKLIILDEADAMTS 121
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQN+LRR +E Y+K TRF + NY ++ L SRC +FRF P+S+E +++ + + +
Sbjct: 122 TAQNSLRRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITK 181
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
E L + +EA+ +L ++++GD+R+A+ LQ
Sbjct: 182 EQLKISSEAIESLCALARGDMRKALNVLQA 211
>gi|346973023|gb|EGY16475.1| replication factor C subunit 3 [Verticillium dahliae VdLs.17]
Length = 393
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 137/220 (62%), Gaps = 6/220 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ +++ + ++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPATLADVSGHHDILATINKFVDKNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV------AVGSGQRRGGYPCPPYKII 159
++GPE + VLELNASDDRGI+VVR +IKTFA+ A G YK+I
Sbjct: 99 IYGPENVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTSARSGGGGGSSSGAAGYKLI 158
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
+LDEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 159 VLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLREADI 218
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + ++EG+ + +A L +++GD+RRA+ LQ
Sbjct: 219 RVLVDRVVDDEGVRIRPDATDALVRLAKGDMRRALNVLQA 258
>gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
Length = 356
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 145/232 (62%), Gaps = 12/232 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK++ DVA +E++ + PH+L YGPPGTGKT+T LA+A Q++G
Sbjct: 37 PWVEKYRPKKLDDVAAHKEIIDTIKRLTVENRLPHLLLYGPPGTGKTSTILAVARQIYGN 96
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
L + LELN+SD+RGI VVR +I+ FA+ +V S + +K+IILDE D+MT
Sbjct: 97 SL-ANMTLELNSSDERGIGVVRQEIQDFASTRSVFSNK---------FKLIILDECDAMT 146
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ ALRR +E Y++ RF ICNY+S+II L SRC KFRF PLS + + R+ ++ +
Sbjct: 147 QDAQAALRRVIEKYTRNARFCLICNYVSKIIPALQSRCTKFRFAPLSPQFVRERLQYVAD 206
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + L L + + GD+RR++ LQ F ++ + + +G P
Sbjct: 207 IEKMKLGPGGLDAVVQLGSGDMRRSLNILQSCHMAF-DTVDQSAVYTCTGNP 257
>gi|363740218|ref|XP_003642280.1| PREDICTED: replication factor C subunit 5-like [Gallus gallus]
Length = 347
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 139/198 (70%), Gaps = 9/198 (4%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PH+L YGPPGTGKT+T LA A QL+ + S VLELNASDDRGI++VR I +FA+
Sbjct: 61 PHLLLYGPPGTGKTSTILACARQLYREREFSSMVLELNASDDRGIDIVRGPILSFASTR- 119
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+ ++G +K++ILDEAD+MT+DAQNALRR +E +++ TRF ICNY+S+II L
Sbjct: 120 -TIFKKG------FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPAL 172
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
SRC +FRF PL+ E+M R+ H+ EEG+++ + + L ++S GD+RRA+ LQ +
Sbjct: 173 QSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVSEDGMKALVTLSSGDMRRALNILQSTSM 232
Query: 263 LFGSSITSKDLISVSGYP 280
FG +T +++ + +G+P
Sbjct: 233 AFG-KVTEENVYTCTGHP 249
>gi|430814133|emb|CCJ28598.1| unnamed protein product [Pneumocystis jirovecii]
Length = 350
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 145/216 (67%), Gaps = 13/216 (6%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S+ PWVEKYRP+ +K++ ++++ + ++ PH+LFYGPPGTGKT+T LA A ++
Sbjct: 37 STLPWVEKYRPEDLKEIVSHQDIILTIEEFIKKNRIPHLLFYGPPGTGKTSTILACAKKI 96
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEA 164
+GP+ +++++LELNASD+RGI+VVR +IK FA+ SG +K++ILDEA
Sbjct: 97 YGPK-FRNQLLELNASDERGIDVVREQIKNFASTKQIFNSG----------FKLVILDEA 145
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT AQNALRR +E Y+K RF ICNY+++I + SRC +FRF+PLS + + ++
Sbjct: 146 DAMTLAAQNALRRVIEKYTKNVRFCIICNYVNKISLAIQSRCTRFRFQPLSSKEICLKLD 205
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
++ E +N+ + + L ++ GD+R+ + LQ
Sbjct: 206 YVIKNENINISEKGKAELVKLADGDMRKGLNILQAC 241
>gi|449464168|ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
gi|449499057|ref|XP_004160708.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
Length = 363
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEK+RPK + DVA ++V + PH+L YGPPGTGKT+T LA+A +L+G
Sbjct: 41 PWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGT 100
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + +LELNASDDRGI+VVR +I+ FA+ S + K+++LDEAD+MT+
Sbjct: 101 N-YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASV-----KLVLLDEADAMTK 154
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR +E Y+K TRF ICN++++II L SRC +FRF PL ++ R+ ++
Sbjct: 155 DAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEA 214
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E L++ L+ L + GD+R+A+ LQ + + IT + + +G P
Sbjct: 215 ERLDVTEGGLAALVRLCTGDMRKALNILQ-STHMASQHITEEAVYLCTGNP 264
>gi|289743537|gb|ADD20516.1| replication factor C subunit RFC2 [Glossina morsitans morsitans]
Length = 333
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 141/233 (60%), Gaps = 9/233 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ PW+EKYRP + ++ EE V L+ N P+++ GPPG GKTTT +A L
Sbjct: 18 NMPWIEKYRPTKFDEIVGNEETVCRLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILL 77
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G +K VLELNAS++RGI+VVR KIK FA Q++ P +KI+ILDEADSM
Sbjct: 78 GDS-FKEAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPKGRHKIVILDEADSM 129
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
TE AQ ALRRTME Y TRF CN +IIEP+ SRCA RF LS+ + ++V+ +C
Sbjct: 130 TEGAQQALRRTMEIYCNTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKVIEVC 189
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E L D E L + +QGD+R+A+ L+ ++ FG I+S ++ V P
Sbjct: 190 QREELQYDEEGLEAIVFTAQGDMRQALNNLESTSKGFG-KISSVNVFKVCDEP 241
>gi|71028744|ref|XP_764015.1| replication factor C subunit 3 [Theileria parva strain Muguga]
gi|68350969|gb|EAN31732.1| replication factor C subunit 3, putative [Theileria parva]
Length = 347
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 143/237 (60%), Gaps = 7/237 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ ++D+ E+++ L E PH+LF+GPPG+GKT+T LAI+ L+G
Sbjct: 8 PWVEKYRPETLQDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGSGKTSTILAISRYLYGS 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSM 167
+ VLELNASD+RGI+ VR +IK F+ + S P K+IILDEAD M
Sbjct: 68 Q-RNGFVLELNASDERGIDTVRDQIKAFSETSNTFTSTMPVDDPPRTNLKLIILDEADQM 126
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQNALRR ME YS RF ICN++++II P+ SRC FRF+PL +V+ R+ I
Sbjct: 127 TNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKSDVVRERIREIA 186
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQ----GAARLFGSSITSKDLISVSGYP 280
E + + AL L I QGD+RR + LQ A+ +I + +++ SG P
Sbjct: 187 KLENVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHAKGADFTIDANLILATSGLP 243
>gi|156537616|ref|XP_001607747.1| PREDICTED: replication factor C subunit 2-like [Nasonia
vitripennis]
Length = 351
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/245 (43%), Positives = 147/245 (60%), Gaps = 11/245 (4%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV +K V S+ PW+EKYRP+ D+ E+ V L+ + N P+++ GPPG GK
Sbjct: 23 EVAKK--AVKTSNVPWIEKYRPQVFTDIVGNEDTVERLSIFAQHGNAPNLIIAGPPGVGK 80
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TTT L A L GP +K VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 81 TTTILCFARILLGPS-FKDAVLELNASNERGIDVVRNKIKMFA-------QKKVNLAPGK 132
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+KIIILDEADSMT+ AQ ALRRTME YS TRF CN +IIEP+ SRCA R+ LS
Sbjct: 133 HKIIILDEADSMTDGAQQALRRTMEIYSSTTRFALACNNSEKIIEPIQSRCAMIRYGKLS 192
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+ + ++V+ +C +E ++ + L + +QGD+R+A+ LQ F + + K++
Sbjct: 193 DAQVLAKVIDVCQKENVSYTDDGLEAIVFTAQGDMRQALNNLQSTVNGF-NHVNGKNVFK 251
Query: 276 VSGYP 280
V P
Sbjct: 252 VCDEP 256
>gi|452205944|ref|YP_007486066.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
gi|452082044|emb|CCQ35295.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 139/215 (64%), Gaps = 10/215 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + ++ E + L + + PH+LF GP GTGKTT+++A+A +++G +
Sbjct: 14 WIEKYRPQALDEIVGHEGITERLKQYINQQDLPHLLFAGPAGTGKTTSSIAVAKEIYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK+FA + G GY +++I LDEAD++T +
Sbjct: 74 -WRENFLELNASDQRGIDVVRDRIKSFARASFG------GYD---HRVIFLDEADALTSE 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL E + ++ I E
Sbjct: 124 AQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGEAAIEEQIEAIAEAE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
G+ + + + L + GD+R+AI LQ AA + G
Sbjct: 184 GIEITDDGMDALVYAAAGDMRKAINGLQAAAVVGG 218
>gi|322795578|gb|EFZ18260.1| hypothetical protein SINV_11151 [Solenopsis invicta]
Length = 354
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 141/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ D+ E+ V L + N P+++ GPPG GKTTT L +A L GP
Sbjct: 40 PWIEKYRPQVFSDIVGNEDTVSRLAVFAQHGNTPNIIIAGPPGVGKTTTILCLARTLLGP 99
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS++RGI+VVR KIK FA Q++ P +KIIILDEADSMT+
Sbjct: 100 A-FKEAVLELNASNERGIDVVRNKIKMFA-------QKKVNLPKGKHKIIILDEADSMTD 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN IIEP+ SRCA R+ L++ + ++VL +C +
Sbjct: 152 GAQQALRRTMEIYSHTTRFALACNNTEEIIEPIQSRCAMLRYGKLTDAQVLAKVLEVCEK 211
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E ++ + + + +QGD+R+A+ LQ F + + ++++ V P
Sbjct: 212 ENISYTDDGMEAIVFTAQGDMRQALNNLQSTRNGF-NHVNAENVFKVCDEP 261
>gi|17647857|ref|NP_523915.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|1703054|sp|P53034.1|RFC2_DROME RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40; AltName: Full=Replication
factor C subunit 4; Short=DmRfc4
gi|639708|gb|AAB60241.1| rfc40 [Drosophila melanogaster]
gi|7292439|gb|AAF47843.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|20151645|gb|AAM11182.1| LD40483p [Drosophila melanogaster]
gi|220944360|gb|ACL84723.1| RfC40-PA [synthetic construct]
gi|220954324|gb|ACL89705.1| RfC40-PA [synthetic construct]
Length = 331
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 151/251 (60%), Gaps = 17/251 (6%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
PEK+ D+ KR S PW+EKYRP + K++ E+ V L+ N P+++ G
Sbjct: 5 PEKTADD-KR-------SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAG 56
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 57 PPGVGKTTTIQCLARILLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKV 108
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 109 TLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAML 168
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
RF LS+ + ++++ + E LN + L + +QGD+R+ + LQ A+ FG IT
Sbjct: 169 RFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFG-DIT 227
Query: 270 SKDLISVSGYP 280
++++ V P
Sbjct: 228 AENVFKVCDEP 238
>gi|409041157|gb|EKM50643.1| hypothetical protein PHACADRAFT_152803 [Phanerochaete carnosa
HHB-10118-sp]
Length = 358
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 133/210 (63%), Gaps = 9/210 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV +++ + +E PH+LFYGPPGTGKT+T LA+A +++G
Sbjct: 41 PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGK 100
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y+ ++LELNASDDRGI+VVR +IK FA + YK+IILDEAD MT
Sbjct: 101 D-YRKQILELNASDDRGIDVVREQIKNFAETRTLFSK--------GYKLIILDEADMMTT 151
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRR +E Y+K RF ICNY+++II + SRC +FRF PL + R+ +
Sbjct: 152 AAQAALRRVIEQYTKNVRFCIICNYVNKIIPAVQSRCTRFRFSPLPVPEVERRINGVIET 211
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQG 259
EG+ + + L +S+GD+RRA+ LQ
Sbjct: 212 EGVKITGDGRKALLKLSKGDMRRALNVLQA 241
>gi|391337930|ref|XP_003743317.1| PREDICTED: replication factor C subunit 2-like [Metaseiulus
occidentalis]
Length = 322
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 140/231 (60%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP++ ++ EE V L N P+++ GPPG GKTTT L +A L G
Sbjct: 6 PWVEKYRPEKFTEIVGNEETVARLEVFSRQGNVPNIILCGPPGVGKTTTILCLARLLLGS 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ VLELNAS+DRGI+VVR KIK FA Q + P +KIIILDEADSMTE
Sbjct: 66 S-FREAVLELNASNDRGIDVVRNKIKMFA-------QTKVTLPPGRHKIIILDEADSMTE 117
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +SK TRF CN +IIEP+ SRCA RF LS+ + ++++ IC +
Sbjct: 118 GAQQALRRTMENFSKTTRFALACNTSDKIIEPIQSRCAVIRFGKLSDAQVLAKIIDICRK 177
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E ++ + L L +QGD+R+AI LQ FG + K++ V P
Sbjct: 178 ENVSYAEDGLEALVYTAQGDMRQAIGNLQSTHVGFG-HVNGKNVFKVCDEP 227
>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
Length = 325
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 138/211 (65%), Gaps = 10/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ + DVA +++ L + +E + P++LF G G GKTT A+AIA +L+G +
Sbjct: 16 WVEKYRPQTLDDVAGHDDITARLKSYIERNDLPNLLFSGQAGIGKTTCAVAIAKELYG-D 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++S LELNASD+RGI+VVR +IK FA R ++II LDEADS+T D
Sbjct: 75 SWQSHFLELNASDERGIDVVRDQIKNFA---------RHDPGAVDFQIIFLDEADSLTSD 125
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME +S TRF CNY S+II+P+ SRCA FRF P+ ++ ++ V ++ +EE
Sbjct: 126 AQAALRRTMEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAVAGYVQYVADEE 185
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
G+ + + L + GD+R+AI LQ AA
Sbjct: 186 GIETTDDGIEALVYAADGDMRKAINALQAAA 216
>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 138/211 (65%), Gaps = 9/211 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRP+ + DV Q E+V + ++ PH+LFYGPPGTGKT+ +A++ +++G
Sbjct: 9 PWIEKYRPQTLDDVYGQREIVGTVRKFVKEGRLPHLLFYGPPGTGKTSMIVALSREIYGT 68
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y++ VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 69 N-YRNMVLELNASDDRGIDVVRNQIKEFAST-------RQIF-SKGFKLIILDEADAMTN 119
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL + + RV +
Sbjct: 120 AAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTDAIEKRVNKVLIL 179
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
E L L EA + L +S+GD+RRA+ LQ +
Sbjct: 180 ENLKLSREAFTALLRLSKGDMRRALNVLQAS 210
>gi|195587662|ref|XP_002083580.1| GD13291 [Drosophila simulans]
gi|194195589|gb|EDX09165.1| GD13291 [Drosophila simulans]
Length = 331
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 151/251 (60%), Gaps = 17/251 (6%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
PEK+ D+ KR S PW+EKYRP + K++ E+ V L+ N P+++ G
Sbjct: 5 PEKTADD-KR-------SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAG 56
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 57 PPGVGKTTTIQCLARILLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKV 108
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 109 TLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAML 168
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
RF LS+ + ++++ + E LN + L + +QGD+R+ + LQ A+ FG IT
Sbjct: 169 RFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFG-DIT 227
Query: 270 SKDLISVSGYP 280
++++ V P
Sbjct: 228 AENVFKVCDEP 238
>gi|323331653|gb|EGA73067.1| Rfc4p [Saccharomyces cerevisiae AWRI796]
Length = 264
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 133/218 (61%), Gaps = 8/218 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E +
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
R+L I E + + L + ++GD+R+AI LQ
Sbjct: 173 KRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210
>gi|433589372|ref|YP_007278868.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|448335506|ref|ZP_21524650.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
gi|433304152|gb|AGB29964.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|445616896|gb|ELY70508.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
Length = 330
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 149/236 (63%), Gaps = 11/236 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+ + D+ ++V L N +E + PH+LF GP GTGKTT A AI
Sbjct: 11 PTPGKTEVWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYS---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTENAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
V I E +++ + + L + GD+R+AI LQ AA + G ++ + + +++
Sbjct: 181 VREIAANEEIDVTDDGVDALVFAADGDMRKAINGLQAAA-VMGETVDEETVFAITA 235
>gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88]
Length = 443
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 137/213 (64%), Gaps = 3/213 (1%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++DV+ +++ + ++ PH+L YGPPGTGKT+T LA+A +++G
Sbjct: 46 PWVEKYRPNTLEDVSGHHDIISTINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYGV 105
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRGGYPCPPYKIIILDEADS 166
+ + VLELNASDDRGI+VVR +IKTFA+ + + + +K+IILDEAD+
Sbjct: 106 KNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPSTKSESTLGAFKLIILDEADA 165
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL EE + V +
Sbjct: 166 MTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQV 225
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+E + + EA+ +L +S+GD+RRA+ LQ
Sbjct: 226 VEKERVRIQPEAIDSLVQLSKGDMRRALNVLQA 258
>gi|336252796|ref|YP_004595903.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
gi|335336785|gb|AEH36024.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
Length = 336
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 150/231 (64%), Gaps = 11/231 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++ W+EKYRP+++ ++ E+++ L N +E + PH++F GP GTGKTT A AIA +++
Sbjct: 22 TEVWIEKYRPERLDEIKGHEDIIPRLKNYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIY 81
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELNASD RGI+VVR +IK FA + G GY ++II LDEAD++
Sbjct: 82 DDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYD---HRIIFLDEADAL 131
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L++ + ++V I
Sbjct: 132 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDNAIEAQVREIA 191
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
++ + + + + L + GD+R+AI LQ AA + G ++ + + +++
Sbjct: 192 ADQDIEVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITA 241
>gi|255712733|ref|XP_002552649.1| KLTH0C09900p [Lachancea thermotolerans]
gi|238934028|emb|CAR22211.1| KLTH0C09900p [Lachancea thermotolerans CBS 6340]
Length = 322
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 134/224 (59%), Gaps = 8/224 (3%)
Query: 42 APVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
A L+ PWVEKYRP +KD+ EE + L + N PH++ G PG GKTT+
Sbjct: 3 ANALKLELPWVEKYRPHLLKDIVGNEETITRLQQIAQDGNMPHLIISGLPGIGKTTSVSC 62
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+IL
Sbjct: 63 LAHELLG-NAYSQAVLELNASDDRGIDVVRNQIKQFA-------QKKCSLPPGRHKIVIL 114
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L ++ +
Sbjct: 115 DEADSMTAGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLQDDQVLR 174
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
R+L + E + + L + ++GD+R+A+ LQ +G
Sbjct: 175 RLLEVIQAENVQYTNDGLEAIIFTAEGDMRQALNNLQSTVAGYG 218
>gi|357165331|ref|XP_003580347.1| PREDICTED: replication factor C subunit 2-like [Brachypodium
distachyon]
Length = 333
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 133/215 (61%), Gaps = 8/215 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH++ GP
Sbjct: 17 PWVEKYRPSRVADVVGNSDAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLGP 76
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 77 S-YREGVLELNASDDRGLDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTT 128
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 129 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVAA 188
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
E + E L + + GD+R+A+ LQ F
Sbjct: 189 EKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGF 223
>gi|125977992|ref|XP_001353029.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
gi|195172285|ref|XP_002026929.1| GL12737 [Drosophila persimilis]
gi|54641780|gb|EAL30530.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
gi|194112697|gb|EDW34740.1| GL12737 [Drosophila persimilis]
Length = 331
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 150/251 (59%), Gaps = 14/251 (5%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
PE E V K ++ PW+EKYRP + ++ E+ V L+ N P+++ G
Sbjct: 2 PEDPETVVAEK-----RTHLPWIEKYRPAKFNEIVGNEDTVARLSVFATQGNAPNIIIAG 56
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 57 PPGVGKTTTIQCLARILLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKV 108
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 109 TLPKGRHKIVILDEADSMTEGAQQALRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAML 168
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
RF LS+ + ++++ + E L+ DAE L + +QGD+R+ + LQ A+ +G +IT
Sbjct: 169 RFTKLSDAQVLAKLIEVSKWESLSYDAEGLEAVVFTAQGDMRQGLNNLQATAQGYG-NIT 227
Query: 270 SKDLISVSGYP 280
+++ V P
Sbjct: 228 MENVFKVCDEP 238
>gi|310795633|gb|EFQ31094.1| replication factor C [Glomerella graminicola M1.001]
Length = 393
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 138/220 (62%), Gaps = 6/220 (2%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ S PWVEKYRP + DV+ ++++ + +++ PH+L YGPPGTGKT+T LA+A +
Sbjct: 39 EDSLPWVEKYRPVSLADVSGHQDILVTINKFVDSNRLPHLLLYGPPGTGKTSTILALARR 98
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAA------VAVGSGQRRGGYPCPPYKII 159
++G E + VLELNASDDRGI+VVR +IKTFA+ + + GG YK+I
Sbjct: 99 IYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPSAKSGGGGGGMASYKLI 158
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
ILDEAD+MT AQ ALRR ME Y+ TRF I NY ++ L SRC +FRF PL E +
Sbjct: 159 ILDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDI 218
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
V + EE + + EA L +S+GD+RRA+ LQ
Sbjct: 219 RVLVDKVIEEEHVKIMPEATEALVKLSKGDMRRALNVLQA 258
>gi|326512276|dbj|BAJ96119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 335
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 133/215 (61%), Gaps = 8/215 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +V DV + V L N P+++ GPPGTGKTT+ LA+AH++ GP
Sbjct: 19 PWVEKYRPSRVADVVGNADAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLGP 78
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y+ VLELNASDDRG++VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 79 S-YREGVLELNASDDRGLDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTT 130
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 131 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVAA 190
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
E + E L + + GD+R+A+ LQ F
Sbjct: 191 EKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGF 225
>gi|195375032|ref|XP_002046307.1| GJ12823 [Drosophila virilis]
gi|194153465|gb|EDW68649.1| GJ12823 [Drosophila virilis]
Length = 331
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 149/251 (59%), Gaps = 14/251 (5%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
PE+ E V K +++ PW+EKYRP + ++ E+ V L+ N P+++ G
Sbjct: 2 PEEMETVVVDK-----RNNLPWIEKYRPVKFDEIVGNEDTVARLSVFSTQGNSPNIIIAG 56
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT +A L G YK VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 57 PPGVGKTTTIQCLARILLGDS-YKDAVLELNASNERGIDVVRNKIKMFA-------QQKV 108
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KI+ILDEADSMTE AQ +LRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 109 TLPRGRHKIVILDEADSMTEGAQQSLRRTMEIYSNTTRFALACNTSEKIIEPIQSRCAML 168
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
RF LS+ + ++++ +C E L D + L + +QGD+R+A+ LQ A+ FG IT
Sbjct: 169 RFTKLSDAQVLAKLIEVCQLEKLKYDEDGLEAIVFTAQGDMRQALNNLQSTAQGFG-DIT 227
Query: 270 SKDLISVSGYP 280
++ V P
Sbjct: 228 GANVFKVCDEP 238
>gi|284163322|ref|YP_003401601.1| replication factor C [Haloterrigena turkmenica DSM 5511]
gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
Length = 330
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 150/236 (63%), Gaps = 11/236 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ ++ E +V L +E P+++F GP GTGKTT A+ I
Sbjct: 11 PTPGRTEVWIEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAGPAGTGKTTAAVGI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++G + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREIYGDD-WRENFLELNASDQRGIDVVRDRIKDFARSSFG------GYS---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L+E+ + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
V I EG+ + + + L + GD+R+AI LQ AA + G ++ + + +++
Sbjct: 181 VREIAANEGIEVTDDGVDALVYAADGDMRKAINGLQAAA-VMGETVDEETVFAITA 235
>gi|225718574|gb|ACO15133.1| Replication factor C subunit 2 [Caligus clemensi]
Length = 325
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 142/231 (61%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PW+EKYRPK D+ E V L E N P+++ GPPG GKTTT L +A L G
Sbjct: 11 PWIEKYRPKTFDDIVGNSETVSRLKVFSEDGNPPNIIIAGPPGVGKTTTILCLARALLGG 70
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+K VLELNAS++RGI+VVR KIK FA Q++ P +KII+LDEADSMTE
Sbjct: 71 S-FKDAVLELNASNERGIDVVRNKIKMFA-------QQKVTLPQSRHKIIVLDEADSMTE 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IEP+ SRCA R+ S+ + ++V+ +C++
Sbjct: 123 AAQQALRRTMEIYSDTTRFCLACNSSEKVIEPIQSRCAMLRYSRPSDAEVLAQVIKVCDK 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
EG++ +E L + +QGD+R+A+ LQ FG I S+++ V P
Sbjct: 183 EGVSYTSEGLEAIVFTAQGDMRQALNNLQSTHDGFGKVI-SENVFRVCDEP 232
>gi|410730707|ref|XP_003980174.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
gi|401780351|emb|CCK73498.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
Length = 321
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 131/209 (62%), Gaps = 8/209 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP +KD+ EE + L + N PHM+ G PG GKTT+ +AH+L G
Sbjct: 11 PWVEKYRPHVLKDIVGNEETILRLEQIAQDGNMPHMIISGLPGIGKTTSIHCLAHELLG- 69
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ Y VLELNASDDRGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 70 DAYSRAVLELNASDDRGIDVVRNQIKHFA-------QKKCYLPPGKHKIIILDEADSMTA 122
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME +S TRF F CN ++IIEPL SRCA R+ LS+E + R+L I
Sbjct: 123 GAQQALRRTMELFSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIKL 182
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E + + L + ++GD+R+AI LQ
Sbjct: 183 EDVKYTNDGLEAIIFTAEGDMRQAINNLQ 211
>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
Length = 349
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 142/232 (61%), Gaps = 9/232 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + + + + L + PH+LFYGPPGTGKT+T +A+A +L+G
Sbjct: 24 PWVEKYRPSSLDQIMSHQHITATLEKFITANQLPHLLFYGPPGTGKTSTIMALAARLYGA 83
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMT 168
+++ VLELNASDDRGI+VVR +IK FA+ V S Q+ +K++ILDEAD+MT
Sbjct: 84 S-FRNNVLELNASDDRGIDVVRGQIKAFASTRNVFSTQK------DTFKLVILDEADAMT 136
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+ AQ ALRR ME Y++ RF ICNY+++II + SRC +FRF PL + ++ +
Sbjct: 137 QAAQAALRRVMEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLDRVQVERQIDSVIA 196
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +DA+A + + QGD+RRA+ LQ A I + +G+P
Sbjct: 197 AEHCQIDAKAKHAILQLCQGDMRRALNILQ-ACHAANDMIDEDSVYLCTGHP 247
>gi|328772590|gb|EGF82628.1| hypothetical protein BATDEDRAFT_86526 [Batrachochytrium
dendrobatidis JAM81]
Length = 340
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 136/224 (60%), Gaps = 9/224 (4%)
Query: 43 PVLQSSQ-PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
P+ +S + PW+EKYRP + D+ EE V L + N P+++ G PG GKTT+ L
Sbjct: 13 PISESPELPWIEKYRPLVLSDIVGNEETVARLQIIAQEGNMPNIIIAGSPGIGKTTSILC 72
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
+AH+L G YK VLELNASDDRGI VVR +IK FA Q++ P +KI+IL
Sbjct: 73 LAHELLGSA-YKEGVLELNASDDRGIEVVRNRIKMFA-------QKKVTLPPGRHKIVIL 124
Query: 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS 221
DEADSMT AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ L++ +
Sbjct: 125 DEADSMTSGAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAILRYTRLTDLQLLR 184
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
R+L IC E + E LS + + GD+R+A+ LQ FG
Sbjct: 185 RLLEICEMENVKHTPEGLSAIIFTADGDMRQAVNNLQSTNSGFG 228
>gi|195337341|ref|XP_002035287.1| GM14011 [Drosophila sechellia]
gi|194128380|gb|EDW50423.1| GM14011 [Drosophila sechellia]
Length = 331
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 150/251 (59%), Gaps = 17/251 (6%)
Query: 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYG 89
PEKS D KR S PW+EKYRP + K++ E+ V L+ N P+++ G
Sbjct: 5 PEKSAD-YKR-------SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAG 56
Query: 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
PPG GKTTT +A L G + YK VLELNAS++RGI+VVR KIK FA Q++
Sbjct: 57 PPGVGKTTTIQCLARILLG-DSYKEAVLELNASNERGIDVVRNKIKMFA-------QQKV 108
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
P +KI+ILDEADSMTE AQ ALRRTME YS TRF CN +IIEP+ SRCA
Sbjct: 109 TLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAML 168
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
RF LS+ + ++++ + E LN + L + +QGD+R+ + LQ A+ FG IT
Sbjct: 169 RFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFG-DIT 227
Query: 270 SKDLISVSGYP 280
++++ V P
Sbjct: 228 AENVFKVCDEP 238
>gi|451854539|gb|EMD67832.1| hypothetical protein COCSADRAFT_112005 [Cochliobolus sativus
ND90Pr]
Length = 394
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 151/260 (58%), Gaps = 26/260 (10%)
Query: 4 NFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPW--VEKYRPKQVK 61
+FG K GK + N P ++ED + PW VEKYRP +
Sbjct: 19 SFGGDSKKGKRSAANL----------PVEAEDTL------------PWYVVEKYRPASLD 56
Query: 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121
DV ++++ + +++ PH+L YGPPGTGKT+T LA+A +++G + + VLELNA
Sbjct: 57 DVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNA 116
Query: 122 SDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
SDDRGI VVR +IKTF++ + + G +K+IILDEAD+MT AQ ALRR M
Sbjct: 117 SDDRGIEVVREQIKTFSSTKQIFSAAPKTGDSSLATFKLIILDEADAMTSTAQMALRRIM 176
Query: 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239
E Y+ TRF I NY ++ L SRC +FRF PL ++ + V + EE +N+ +A
Sbjct: 177 EKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHLVDKVIEEEKVNITQDAT 236
Query: 240 STLSSISQGDLRRAITYLQG 259
+L ++S+GD+RRA+ LQ
Sbjct: 237 DSLVTLSKGDMRRALNVLQA 256
>gi|429965988|gb|ELA47985.1| hypothetical protein VCUG_00568 [Vavraia culicis 'floridensis']
Length = 304
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 134/220 (60%), Gaps = 10/220 (4%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S QP VEKYRP + +V E V+ L E N PH+L YGPPGTGKTT+ AIA L
Sbjct: 2 SIQPLVEKYRPSTLDEVLGNELVIEALKRLQEHDNLPHILLYGPPGTGKTTSIRAIAKFL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+ + VLELNASDDRGINVVR +IK FA ++ K+++LDEADS
Sbjct: 62 YKQTIM-CNVLELNASDDRGINVVREQIKCFAVSRSFQNKK---------KLVVLDEADS 111
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
M+ DAQNALRR +E YS RF FI NY +II + SRC+KFRF P+S + + RV HI
Sbjct: 112 MSRDAQNALRRVIEDYSGNVRFCFIANYAHKIIPAIQSRCSKFRFSPVSSDAIKKRVRHI 171
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
E + +D + + L S+GD+RR + L G +R G+
Sbjct: 172 SEMESIPIDDKCIDILVQESEGDMRRLVNTLDGLSRFKGA 211
>gi|358389695|gb|EHK27287.1| hypothetical protein TRIVIDRAFT_82171 [Trichoderma virens Gv29-8]
Length = 357
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 133/216 (61%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R++ I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLMQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + L+ L ++GD+R+AI LQ FG
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTWAGFG 241
>gi|196010307|ref|XP_002115018.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens]
gi|190582401|gb|EDV22474.1| hypothetical protein TRIADDRAFT_28707, partial [Trichoplax
adhaerens]
Length = 315
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 143/229 (62%), Gaps = 9/229 (3%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
+EKYRPKQ+ +V E+ + L + N P+++ GPPGTGKTT+ L IA QL G +
Sbjct: 1 IEKYRPKQLDEVVGNEDTISRLEVFAKEGNLPNIVIAGPPGTGKTTSILCIARQLLGTSM 60
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
K VLELNAS+DRGI+VVR KIK FA Q++ P +KIIILDEADSMT+ A
Sbjct: 61 -KDAVLELNASNDRGIDVVRNKIKMFA-------QKKVTLPLGKHKIIILDEADSMTDGA 112
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
Q ALRRTME YSK TRF CN +IIEP+ SRCA RF L++ + +R++ +C +E
Sbjct: 113 QQALRRTMEIYSKTTRFALACNTSEKIIEPIQSRCAVLRFTRLNDSQILARLMEVCRQES 172
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+ + L + +QGD+R+A+ LQ FG + S+++ V P
Sbjct: 173 VIATNDGLEAVIFTAQGDMRQALNNLQSTYAGFG-HVNSENVFKVCDEP 220
>gi|15221697|ref|NP_176504.1| replication factor C 2 [Arabidopsis thaliana]
gi|12323266|gb|AAG51618.1|AC010795_22 replication factor, putative; 74998-73295 [Arabidopsis thaliana]
gi|182623790|gb|ACB88833.1| At1g63160 [Arabidopsis thaliana]
gi|332195942|gb|AEE34063.1| replication factor C 2 [Arabidopsis thaliana]
Length = 333
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 142/233 (60%), Gaps = 9/233 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
++PWVEKYRP +V D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L
Sbjct: 14 NEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 73
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEADSM
Sbjct: 74 GTN-YKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSM 125
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRRT+E YS TRF CN ++IIEP+ SRCA RF LS++ + R+L +
Sbjct: 126 TSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVV 185
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E + E L + + GD+R+A+ LQ F S + +++ V P
Sbjct: 186 AAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF-SFVNQENVFKVCDQP 237
>gi|358401379|gb|EHK50685.1| hypothetical protein TRIATDRAFT_157714 [Trichoderma atroviride IMI
206040]
Length = 357
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 133/216 (61%), Gaps = 8/216 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + DV E + L + N PH++ G PG GKTT+ L +A QL G
Sbjct: 34 PWVEKYRPVFLDDVVGNTETIERLKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLG- 92
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E YK VLELNASD+RGI+VVR +IK FA Q++ P +K++ILDEADSMT
Sbjct: 93 ESYKEAVLELNASDERGIDVVRNRIKGFA-------QKKVTLPAGRHKLVILDEADSMTS 145
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ L++E + R++ I
Sbjct: 146 GAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYAKLTDEQVVKRLMQIIEA 205
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
E + + L+ L ++GD+R+AI LQ FG
Sbjct: 206 EKVEYSDDGLAALVFSAEGDMRQAINNLQSTWAGFG 241
>gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 327
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 94/208 (45%), Positives = 135/208 (64%), Gaps = 9/208 (4%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111
VEKYRP + DV +++ + +E PH+L YGPPGTGKT+T LA+A +L+GP
Sbjct: 11 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA- 69
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA 171
Y+ +LELNASDDRGI+VVR +IK FA V + +K++ILDEAD MT+ A
Sbjct: 70 YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSK--------GFKLVILDEADMMTQAA 121
Query: 172 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEG 231
Q+ALRR +E ++K RF +CNY+++I + SRC +FRF PL E+ + +V + +EG
Sbjct: 122 QSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEG 181
Query: 232 LNLDAEALSTLSSISQGDLRRAITYLQG 259
+NL + L +S+GD+RRA+ LQ
Sbjct: 182 VNLTDDGRDALLKLSRGDMRRALNVLQA 209
>gi|448337480|ref|ZP_21526557.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
gi|445625386|gb|ELY78746.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
Length = 330
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 11/236 (4%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
P ++ W+EKYRP+++ D+ ++V L N +E + PH+LF GP GTGKTT A +I
Sbjct: 11 PTPGKTEVWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162
A +++ + ++ LELNASD RGI+VVR +IK FA + G GY ++II LD
Sbjct: 71 AREVYDDD-WQENFLELNASDQRGIDVVRDRIKDFARSSFG------GYS---HRIIFLD 120
Query: 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222
EAD++T DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF LS + + ++
Sbjct: 121 EADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSADAIEAQ 180
Query: 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
V I E + + + + L + GD+R+AI LQ AA + G ++ + + +++
Sbjct: 181 VREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAA-VMGETVDEETVFAITA 235
>gi|118576898|ref|YP_876641.1| replication factor C small subunit [Cenarchaeum symbiosum A]
gi|118195419|gb|ABK78337.1| replication factor C small subunit [Cenarchaeum symbiosum A]
Length = 311
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 136/212 (64%), Gaps = 10/212 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
WVEKYRPK++ DV Q+E++ + L+ A PH+LF G G GKTTTAL IA Q+ GP
Sbjct: 2 WVEKYRPKKLADVVDQKEIIGSIEALLKNAGEMPHLLFSGSAGVGKTTTALCIARQVLGP 61
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + +LELNASD+RGI +VR K+K F+ A + P+KIIILDEAD MT
Sbjct: 62 HI-QDNLLELNASDERGIGMVRDKVKRFSNFA--------AFEEIPFKIIILDEADEMTA 112
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRRT+E SK+ RF + N IS+II+P+ SRCA ++F + E+ +++ I
Sbjct: 113 DAQTALRRTIEDASKICRFIIVANNISKIIDPIQSRCAVYKFTSIPEKEAMAQLKKIAKG 172
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
E ++D E L + S+GDLR AI LQ AA
Sbjct: 173 EKASIDEEGLKEVYEQSEGDLRHAINILQAAA 204
>gi|354609736|ref|ZP_09027692.1| Replication factor C small subunit [Halobacterium sp. DL1]
gi|353194556|gb|EHB60058.1| Replication factor C small subunit [Halobacterium sp. DL1]
Length = 323
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 139/213 (65%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ WVEKYRP++++DV ++ L + ++ + PH+LF GP GTGKT +A++IA +++G
Sbjct: 10 EIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASAVSIAKEIYG 69
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD RGI+VVR +IK FA + G GY Y++I LDEAD++T
Sbjct: 70 DD-WQENFLELNASDQRGIDVVRDRIKNFARASFG------GYD---YRVIFLDEADALT 119
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF + ++ +++ + I
Sbjct: 120 DDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFSQIDDDAVAAHLRDIAG 179
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
E L + L + GD+RRAI LQ A+
Sbjct: 180 REDLEYTEAGIDALVYAADGDMRRAINALQAAS 212
>gi|384248690|gb|EIE22173.1| DNA replication factor C complex subunit 2 [Coccomyxa
subellipsoidea C-169]
Length = 366
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 139/235 (59%), Gaps = 9/235 (3%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
S PWVEK+RP VKD+ + V L E N P+++ GPPGTGKTT+ L +A
Sbjct: 40 DSGIPWVEKFRPLYVKDIVGNTDAVDRLQVISEEGNMPNIILAGPPGTGKTTSILCLARA 99
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
L G YK VLELNASDDRGI+VVR KIK FA Q++ P +K++ILDEAD
Sbjct: 100 LLGQN-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEAD 151
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT AQ ALRRTME YS TRF CN S+IIEP+ SRCA R+ LS++ + R+L
Sbjct: 152 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRYTKLSDKEVLERLLV 211
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
+C E + E L + + GD+R+A+ LQ FG IT + + V P
Sbjct: 212 VCRSESVPYVDEGLGAVIFTADGDMRQALNNLQATYYGFG-MITPEHVFKVCDQP 265
>gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB]
Length = 340
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 135/209 (64%), Gaps = 9/209 (4%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK FA+ R + +K+IILDEAD+MT
Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFAST-------RQIF-SKGFKLIILDEADAMTN 124
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL +E + R+ ++
Sbjct: 125 AAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVH 184
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQ 258
E L L A L +S GD+RR + LQ
Sbjct: 185 EKLKLSPNAEKALIELSNGDMRRVLNVLQ 213
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,488,560,726
Number of Sequences: 23463169
Number of extensions: 176103550
Number of successful extensions: 794877
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9060
Number of HSP's successfully gapped in prelim test: 12288
Number of HSP's that attempted gapping in prelim test: 763931
Number of HSP's gapped (non-prelim): 27312
length of query: 294
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 153
effective length of database: 9,050,888,538
effective search space: 1384785946314
effective search space used: 1384785946314
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)