BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022641
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 301 bits (770), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 150/256 (58%), Positives = 183/256 (71%), Gaps = 8/256 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277
R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIA 266
Query: 278 GY-PTGGSGGAFRGVQ 292
G P G F Q
Sbjct: 267 GVIPAEKIDGVFAACQ 282
>sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1
Length = 364
Score = 299 bits (766), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/252 (59%), Positives = 185/252 (73%), Gaps = 8/252 (3%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VS 277
R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D+I+ ++
Sbjct: 207 QQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIA 266
Query: 278 GY-PTGGSGGAF 288
G P G F
Sbjct: 267 GVIPAATIDGIF 278
>sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RFC2 PE=3 SV=1
Length = 411
Score = 284 bits (726), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 137/240 (57%), Positives = 177/240 (73%), Gaps = 18/240 (7%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVA----VGSGQRRGG---------- 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA V + + GG
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFR
Sbjct: 153 YSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
FK L + RV I E + LDA L ++ GDLR+AIT+LQ AARL G++ T+
Sbjct: 213 FKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTA 272
>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum
GN=rfc4 PE=3 SV=1
Length = 347
Score = 280 bits (715), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 164/233 (70%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL R+
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
I +EG+ + + +S GD+R+AITYLQ A R F + I+ + +++G
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAG 239
>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc2 PE=1 SV=1
Length = 340
Score = 278 bits (711), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/249 (53%), Positives = 182/249 (73%), Gaps = 11/249 (4%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
+K+E E K+ S PWVE YRPK + V+ QE V+VL TL + N PHMLFYG
Sbjct: 9 KKTEQEAKK--------SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGS 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA++ +LFGP+L KSRVLELNASD+RGI+++R K+K+FA V + + G
Sbjct: 61 PGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN--KVDG 118
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
YPCPP+KIIILDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++RII+PL+SRC+K+R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYR 178
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSIT 269
FKPL E M R+ I ++ ++++ ++ L S GD+R+AIT+LQ AA L G+ IT
Sbjct: 179 FKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPIT 238
Query: 270 SKDLISVSG 278
+ ++G
Sbjct: 239 ISSVEELAG 247
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 278 bits (711), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 131/218 (60%), Positives = 160/218 (73%), Gaps = 2/218 (0%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262
I +E + D L + IS GDLRR IT LQ A++
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASK 240
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 238 bits (607), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/217 (53%), Positives = 150/217 (69%), Gaps = 9/217 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
IC +EG+ + + L L IS GD R+AI LQGAA
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAA 208
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 153/223 (68%), Gaps = 11/223 (4%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ VL+ WVEKYRP+ + D+ Q+ VV L ++ N PH+LF GPPGTGKTT A
Sbjct: 1 MSSVLE--MLWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAH 58
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
A+AH LFG E Y+ +LELNASD+RGINV+R K+K FA R P P+KI++
Sbjct: 59 ALAHDLFG-ENYRQYMLELNASDERGINVIREKVKEFA--------RSRTPPEIPFKIVL 109
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEAD+MT DAQ ALRR ME YS VTRF I NY S+II+P+ SRCA FRF+PLS++ +
Sbjct: 110 LDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVI 169
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
R+ +I EG++ + EAL + IS+GD+R+AI LQ A+ L
Sbjct: 170 ERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYL 212
>sp|P53016|RFC4_CAEEL Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4
PE=1 SV=1
Length = 334
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/231 (49%), Positives = 150/231 (64%), Gaps = 7/231 (3%)
Query: 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGK 95
EV K VL W EKYRPK + D+A+Q+EVV +L L+ + PH+LFYGPPGTGK
Sbjct: 6 EVDNKRPKVLT----WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGK 61
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
T+ ALA QLF ++ RVL+LNASD+RGI VVR KI++F+ ++G R
Sbjct: 62 TSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLK--- 118
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
KIIILDE D+MT +AQ A+RR +E +SK TRF ICNY+SR+I P+ SRCAKFRFK L
Sbjct: 119 LKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLP 178
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
E+ R+ IC+ EG + + L + S+GDLRRA+ LQ A + S
Sbjct: 179 AEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKS 229
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 148/220 (67%), Gaps = 9/220 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ QEE+V L ++ N PH+LF GPPGTGKTT A +AH LFG E
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-E 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+R+K+K FA V + P+KI++LDEAD+MT D
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVAAN--------IPFKIVLLDEADNMTAD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PL +E + SR+ I +E
Sbjct: 124 AQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
+ +D EAL + +S+GD+RRAI LQ AA L ++ S
Sbjct: 184 KVEIDEEALEAIHDLSEGDMRRAINILQAAAALGKVTVDS 223
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 149/221 (67%), Gaps = 10/221 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
L+ W EKYRP+ + D+ +Q+++V L ++ N PH+LF GPPGTGKTT ALA+ H
Sbjct: 3 LEEEILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVH 62
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
L+G Y+ LELNASD+RGI+V+R K+K FA G P+K+++LDEA
Sbjct: 63 DLYGDN-YRQYFLELNASDERGIDVIRNKVKEFARTVAGGN--------VPFKVVLLDEA 113
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D+MT DAQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+
Sbjct: 114 DNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLA 173
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
+I E + D +AL T+ I+QGD+R+AI LQ A+ ++G
Sbjct: 174 YIAKNEKVEYDQKALETIYDITQGDMRKAINILQ-ASSVYG 213
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 224 bits (572), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 149/216 (68%), Gaps = 11/216 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S + WVEKYRP+ + ++ QEE+V+ L ++ N PH+LF GPPGTGKTT ALA+AH L
Sbjct: 2 SEELWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDL 61
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEAD 165
+G E ++ LELNASD+RGI+V+R++IK +A + +G P+K++ILDEAD
Sbjct: 62 YG-ESWRDNTLELNASDERGIDVIRSRIKDYARTLPIGD---------VPFKLVILDEAD 111
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT DAQ ALRRTME +S+ TRF I NY S+IIEP+ SRCA FRF+PL + R+
Sbjct: 112 NMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRW 171
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
I +EG+ +D AL + SQGDLR+AI LQ A+
Sbjct: 172 IAQQEGITVDDGALEAIWEESQGDLRKAINTLQAAS 207
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 224 bits (570), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 142/212 (66%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ HI
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ L +A+ + +S+GD+R+AI LQ AA
Sbjct: 176 EGIELRDDAIDLIYEVSEGDMRKAINLLQVAA 207
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 152/230 (66%), Gaps = 14/230 (6%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ D+ +QEE+ + L + +E N PH+LF GPPGTGKTT ALA+AH+L+G +
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYG-D 62
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFA-AVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI+V+R K+K FA A +G P+KI+ LDEAD++T
Sbjct: 63 AWRENFLELNASDERGIDVIRHKVKEFARAKPIGD---------VPFKIVFLDEADALTR 113
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME YS+ TRF CNY S+IIEP+ SR F+FKPL +E + I
Sbjct: 114 DAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKG 173
Query: 230 EGLNL--DAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
EGL L + E ++ L I++GDLR+AI LQ AA + +IT L ++
Sbjct: 174 EGLILENEDEIINALYDIAEGDLRKAINILQAAA-MMSKTITVDRLYEIA 222
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 144/212 (67%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ + +A+ + +S+GD+R+AI LQ AA
Sbjct: 176 EGVEVKEDAIDLIYELSEGDMRKAINILQVAA 207
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 143/212 (67%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ L +A++ + +S+GD+R+AI LQ AA
Sbjct: 176 EGVELREDAINMIYELSEGDMRKAINLLQVAA 207
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 220 bits (561), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 141/211 (66%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + D+ +Q E++ L ++ N PH+LF GPPGTGKTT ALA+ H L+G
Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y LELNASD+RGI+V+R K+K FA + P+K+++LDEAD+MT D
Sbjct: 70 -YTEYFLELNASDERGIDVIRNKVKEFARTVIPGD--------IPFKVVLLDEADNMTAD 120
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R+++I E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNE 180
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
D +AL T+ I+ GD+R++I LQ A+
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQAAS 211
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 220 bits (561), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 142/212 (66%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ ++V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGI V+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGIGVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARS 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ L +A+ + IS+GD+R+AI LQ AA
Sbjct: 176 EGVELKDDAIDLIYEISEGDMRKAINLLQVAA 207
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 144/213 (67%), Gaps = 8/213 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG
Sbjct: 9 EIWIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFG 68
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+L++ ELNASD+RGI+VVRTKIK FA A G +KII LDEAD++T
Sbjct: 69 EDLWRENFTELNASDERGIDVVRTKIKNFAKTAPMGG--------AEFKIIFLDEADALT 120
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY SRIIEP+ SRCA FRF+ LS+E + R+ +I
Sbjct: 121 SDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAK 180
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
++ L++ + L +SQGD+R+A+ LQ AA
Sbjct: 181 DQVLSITEDGYEALVYVSQGDMRKAVNSLQAAA 213
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 142/211 (67%), Gaps = 9/211 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ +Q+E+V L ++ N PH+LF GPPGTGKTT ALA+ L+G
Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ LELNASD+RGI+V+R K+K FA + P+K+I+LDEAD+MT D
Sbjct: 67 -YRQYFLELNASDERGIDVIRNKVKEFARTVASNN--------VPFKVILLDEADNMTAD 117
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL +E + +R++ I E
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNE 177
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ D + + T+ I+QGD+R+AI +Q A+
Sbjct: 178 KVEFDPKGIETIFDITQGDMRKAINVIQAAS 208
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 218 bits (555), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI++VR I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 131
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQE 191
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 192 ENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 241
>sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=Caenorhabditis elegans
GN=F44B9.8 PE=3 SV=3
Length = 368
Score = 217 bits (553), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 150/246 (60%), Gaps = 8/246 (3%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
KM S+ PWVEKYRP ++ ++ E++V+ LT +E PH+LFYGPPGTGKTTT
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV----AVGSGQRRGGYPCPP 155
LA A Q++ P S VLELNASD+RGI+VVR I FA A + G P
Sbjct: 80 LAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTV---P 136
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY++ I+ + SRC +FRF PL
Sbjct: 137 FKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLD 196
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
++++ R+ +I E L + + L +S+GD+R I LQ A F +++ +
Sbjct: 197 QKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSF-DTVSENTVYQ 255
Query: 276 VSGYPT 281
G PT
Sbjct: 256 CIGQPT 261
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 217 bits (553), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 155/231 (67%), Gaps = 9/231 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ ++++ + + PH+L YGPPGTGKT+T LA A QL+
Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ + S VLELNASDDRGI+++R I +FA+ + ++G +K++ILDEAD+MT+
Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTR--TIFKKG------FKLVILDEADAMTQ 132
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ E+M R+ H+ E
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280
E +++ + + L ++S GD+RRA+ LQ FG +T + + + +G+P
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHP 242
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 217 bits (552), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 144/213 (67%), Gaps = 8/213 (3%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP ++ VA Q+E + L + + T N PH+LF GPPG GKT +A++IA ++FG
Sbjct: 13 EIWIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFG 72
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T
Sbjct: 73 EDLWRENFTELNASDERGIDIVRNKIKNFAKTAPIGG--------APFKIIFLDEADALT 124
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+IIEP+ SRCA +RF+ LS+E + R+ +I
Sbjct: 125 ADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAG 184
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
++GL++ L ++QGD+R+A+ LQ AA
Sbjct: 185 DQGLSITEGGYEALIYVAQGDMRKAVNSLQAAA 217
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/212 (50%), Positives = 141/212 (66%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L +++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR RF PL +E + SR+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ + +AL T+ +QGD+R+AI LQ AA
Sbjct: 176 EGVKISDDALETIYEFTQGDMRKAINALQIAA 207
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 142/211 (67%), Gaps = 8/211 (3%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI++VR KIK FA A G P+KII LDEAD++T D
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPMGG--------APFKIIFLDEADALTSD 126
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY S+IIEP+ SRCA +RF+ LS++ + R+ +I E+
Sbjct: 127 AQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQ 186
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
L++ L ++QGD+R+A+ LQ AA
Sbjct: 187 DLSITDGGYEALIYVAQGDMRKAVNSLQAAA 217
>sp|Q54ST4|RFC5_DICDI Probable replication factor C subunit 5 OS=Dictyostelium discoideum
GN=rfc5 PE=3 SV=1
Length = 347
Score = 214 bits (545), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 148/234 (63%), Gaps = 8/234 (3%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PWVEKYRPK + D+ E++ + +T ++ PH+LFYGPPGTGKT+T AIA +L+
Sbjct: 23 SLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLY 82
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
G Y VLELNASDDRGI+VVR +IKTFA+ PYK+IILDEADSM
Sbjct: 83 GDN-YSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTT------VPYKLIILDEADSM 135
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T AQ ALRR +E Y+K TRF +CNY+ +II L SRC +FRF PL R+ I
Sbjct: 136 TNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEII 195
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR-LFGSSITSKDLISVSGYP 280
+E + +D++A++ + + GD+R+ + LQ + ++IT + + +GYP
Sbjct: 196 EKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYP 249
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 142/214 (66%), Gaps = 11/214 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E LNL+ + + +S+GD+R+AI LQ AA
Sbjct: 173 EKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 145/229 (63%), Gaps = 12/229 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L + N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NYIS IIEP+ SR RF PL +E + +R+ +I +
Sbjct: 116 DAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
EG+ + +AL + +QGD+RRAI LQ AA G IT + + G
Sbjct: 176 EGVKISDDALEAIYEFTQGDMRRAINALQIAATT-GKEITEETVAKALG 223
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 139/212 (65%), Gaps = 11/212 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP+ +V EEV L ++ N PH+LFYGPPGTGKTT AL +A +L+G E
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMTE 169
++ LELNASD+RGINV+R ++K FA A VG P+K++ILDEAD+MT
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTS 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRR ME Y++ TRF + NY+S IIEP+ SR RF PL +E + +R+ +I
Sbjct: 116 DAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAEN 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EG+ + +AL + +QGD+RRAI LQ AA
Sbjct: 176 EGVKVSDDALEAIYEFTQGDMRRAINALQIAA 207
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 212 bits (540), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 141/214 (65%), Gaps = 11/214 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E L L+ + + +S+GD+R+AI LQ AA
Sbjct: 173 EKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 211 bits (537), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 141/214 (65%), Gaps = 11/214 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -ETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E L L+ + + +S+GD+R+AI LQ AA
Sbjct: 173 EKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
>sp|Q5UQ72|RFCS4_MIMIV Putative replication factor C small subunit L510 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1
Length = 363
Score = 211 bits (536), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 138/212 (65%), Gaps = 1/212 (0%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
S PW+EKYRPK+++D+ + ++ + N+ + H LFYGPPGTGKT+ LA+ ++F
Sbjct: 6 SVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIF 65
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E +++RV+E NASDDRGIN VR KI A V + G P YKIIILDEADSM
Sbjct: 66 -KEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSM 124
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T++AQ+ALR +E YS TRF FICNYI++I + + SRC+ FK LS+E M ++ I
Sbjct: 125 TDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDIS 184
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+E + L L T+ +S GD+R+AI LQ
Sbjct: 185 LKESMELPKNILHTIIDVSNGDMRKAIMLLQN 216
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 142/216 (65%), Gaps = 13/216 (6%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
++S PWVEKYRP + +VA E V+ + +E PH+LF+GPPGTGKTTT +A+A Q
Sbjct: 14 ENSLPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQ 73
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRRGGYPCPPYKIIILDE 163
++G Y++ +LELNASD+RGI+VVR +IKTFA+ SG +K++ILDE
Sbjct: 74 IYGKN-YRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----------FKLVILDE 122
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD+MT AQNALRR +E YS TRF + NY ++ L SRC +FRF PL E+ + R+
Sbjct: 123 ADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRL 182
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
H+ +E ++L EA +L +S GD+RRA+ LQ
Sbjct: 183 AHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQA 218
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 141/214 (65%), Gaps = 11/214 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V E+++ LTN +E + PH+LF G PG GKTT ALA+A L+G
Sbjct: 3 KPWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+ ++ LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+E L L+ + + +S+GD+R+AI LQ AA
Sbjct: 173 EKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 208 bits (529), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 141/215 (65%), Gaps = 12/215 (5%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+PWVEKYRP+ + +V +E+++ L N +E + PH+LF G PG GKTT AL +A L+G
Sbjct: 3 KPWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYG 62
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSM 167
+K LELN+SD+RGI+V+RTK+K FA +G P+K+I LDE+D++
Sbjct: 63 -NTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDA---------PFKVIFLDESDAL 112
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL E + + I
Sbjct: 113 TSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEIS 172
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQ-GAA 261
+E +N++ + + +S+GD+R+AI LQ GAA
Sbjct: 173 EKESINVEKSGMDAIIYVSEGDMRKAINVLQTGAA 207
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 207 bits (528), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 146/220 (66%), Gaps = 11/220 (5%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+ + W EKYRP++++DV +++ R L + +++ N PH+LF GPPG GKT A+A+A
Sbjct: 1 MAEDEIWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDE 163
+L+G E + S +ELNASD+RGI+VVR IK FA A +G + +KII LDE
Sbjct: 61 ELYG-ETWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAK---------FKIIFLDE 110
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
AD++T DAQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF PL+ +++ +
Sbjct: 111 ADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGI 170
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
I EGL ++ + + L +++GD+RRAI LQ AA +
Sbjct: 171 TRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATI 210
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 154/232 (66%), Gaps = 12/232 (5%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
S + W+EKYRPK + +V Q++VV L + + T PH+LF G G GKTT A+A+A ++
Sbjct: 4 SPEIWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREM 63
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEAD 165
FG + + ELNASD+RGI+VVR +IK FA A +G +KI+ LDEAD
Sbjct: 64 FG-DTWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDA---------TFKILFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T+DAQ ALRRTME Y++ RF CNY S+II+P+ SRCA +RF+PL++E +S +
Sbjct: 114 ALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIAR 173
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
I +EG+ +D A ++ +S GD+R+AI LQGAA + +T++++ +++
Sbjct: 174 IAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAA-IVSDHVTAENIYAIT 224
>sp|O14003|RFC3_SCHPO Replication factor C subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc3 PE=1 SV=2
Length = 342
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 143/215 (66%), Gaps = 9/215 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S+ PWVEKYRP ++DV ++++ L + + PHMLFYGPPGTGKT+T LA A +
Sbjct: 20 ESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARK 79
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GP Y+++++ELNASDDRGI+ VR +IK FA+ R + +K+IILDEAD
Sbjct: 80 IYGPN-YRNQLMELNASDDRGIDAVREQIKNFAST-------RQIFA-STFKMIILDEAD 130
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQNALRR +E Y+K RF ICNYI++I + SRC +FRF+PL + + V H
Sbjct: 131 AMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDH 190
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
+ E N+D +A + +S+GD+R+A+ LQ
Sbjct: 191 VIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQAC 225
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/228 (46%), Positives = 145/228 (63%), Gaps = 13/228 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+++ D+ QE ++ L +E + P+++F GP G GKTT ALA+A ++ G
Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILG- 65
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVA-VGSGQRRGGYPCPPYKIIILDEADSMT 168
E ++ LELNASD RGI+ VRT IK F + VG+ P++II LDE D+MT
Sbjct: 66 EYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGA----------PFRIIFLDEVDNMT 115
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRR ME Y+K + F CNY S+II+P+ SRCA FRF PL + R+ +I
Sbjct: 116 KDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAE 175
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISV 276
+E L +A AL T+ ++GDLR+AI LQ AA L G IT + V
Sbjct: 176 KENLEYEAHALETIVYFAEGDLRKAINLLQSAASL-GEKITESSIYDV 222
>sp|O94449|RFC4_SCHPO Replication factor C subunit 4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc4 PE=1 SV=1
Length = 342
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 144/232 (62%), Gaps = 9/232 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP + D+ EE + L + N PH++ G PG GKTT+ L +AH L GP
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASD+RGI+VVR +IK FA Q++ P +KIIILDEADSMT
Sbjct: 82 A-YKEGVLELNASDERGIDVVRNRIKAFA-------QKKVILPPGRHKIIILDEADSMTA 133
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L+++ + R+L+IC
Sbjct: 134 GAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKA 193
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPT 281
E +N + L+ L ++GD+R+A+ LQ FG + +++ V+ P+
Sbjct: 194 EKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFG-LVNGENVFRVADQPS 244
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 136/213 (63%), Gaps = 10/213 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ W+EKYRP+ + DV E +V L + + + HMLF GP GTGKTT A AIA +L+G
Sbjct: 14 EVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG 73
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y+II LDEAD++T
Sbjct: 74 DD-WREHFLELNASDERGIDVVRDRIKNFA---------RTSFGGVEYRIIFLDEADALT 123
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
DAQ+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL+++ ++ + I
Sbjct: 124 SDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAA 183
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
EE + L + L L + GD+R+AI LQ A+
Sbjct: 184 EEDIELTEDGLDALVYAADGDMRKAINGLQAAS 216
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 138/216 (63%), Gaps = 10/216 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ + D+ E + L + + PH+LF GP G GKTT A AIA +++G +
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ LELNASD RGI+VVR +IK+FA + G GY ++II LDEAD++T D
Sbjct: 74 -WRENFLELNASDQRGIDVVRDRIKSFARASFG------GYD---HRIIFLDEADALTSD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL + + ++ I + E
Sbjct: 124 AQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
G+ L + + L + GD+R+AI LQ AA + G+
Sbjct: 184 GIELTDDGVDALVYAADGDMRKAINGLQAAAVMGGT 219
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 147/224 (65%), Gaps = 11/224 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+ ++D+ Q+E++ L + + PH+LF G GTGKTT A+A+A + FG E
Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFG-E 66
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
++ ELNASD+RGI+VVR +IK FA R + +KI+ LDEAD++T D
Sbjct: 67 DWQMNFRELNASDERGIDVVRNQIKQFA--------RTSPFGGSTFKILFLDEADALTTD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTMETY++ RF CNY ++II+P+ SRCA +RF+PL + +S V I ++
Sbjct: 119 AQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQ 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
L + E + + ++QGD+R+AI LQGAA + G I S D+I
Sbjct: 179 NLTVTEEVIDAIFYVAQGDMRKAINALQGAA-ILGRDI-SPDMI 220
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 201 bits (511), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 143/218 (65%), Gaps = 9/218 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+S W+EKYRP ++ D+ Q+++V L++ +++ N PH+LF G G GKTT A+ +A +
Sbjct: 3 ESHTIWIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLARE 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
FG + ++ ELNASD+RGI+VVR +IK FA R G +KI+ LDEAD
Sbjct: 63 FFG-DSWQMNFRELNASDERGIDVVRNQIKEFART------RPAGDAA--FKILFLDEAD 113
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
++T DAQ ALRRTME+Y+K RF CNY S+II+P+ SRCA +RF+PL + + +
Sbjct: 114 ALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITR 173
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
I E L++ EA+ + I+QGD+R+AI LQGAA L
Sbjct: 174 IAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAAIL 211
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 200 bits (509), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 148/230 (64%), Gaps = 11/230 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ WVEKYRP++++DV ++ L + ++ + PH+LF GP GTGKT ++++IA +L+G
Sbjct: 10 EIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYG 69
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y++I LDEAD++T
Sbjct: 70 DD-WQDNFLELNASDERGIDVVRDRIKDFA---------RSSFGGHNYRVIFLDEADALT 119
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L ++ +++ + I
Sbjct: 120 DDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAE 179
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
EGL + + L + GD+RRAI LQ AA G S+ + + +++
Sbjct: 180 TEGLEHTDDGIDALVYAADGDMRRAINALQ-AASATGDSVNEETVYAITA 228
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 200 bits (509), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 148/230 (64%), Gaps = 11/230 (4%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
+ WVEKYRP++++DV ++ L + ++ + PH+LF GP GTGKT ++++IA +L+G
Sbjct: 10 EIWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYG 69
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT 168
+ ++ LELNASD+RGI+VVR +IK FA R + Y++I LDEAD++T
Sbjct: 70 DD-WQDNFLELNASDERGIDVVRDRIKDFA---------RSSFGGHNYRVIFLDEADALT 119
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
+DAQ+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L ++ +++ + I
Sbjct: 120 DDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAE 179
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
EGL + + L + GD+RRAI LQ AA G S+ + + +++
Sbjct: 180 TEGLEHTDDGIDALVYAADGDMRRAINALQ-AASATGDSVNEETVYAITA 228
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 135/209 (64%), Gaps = 9/209 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK++ DV ++E + L + ++ + PH++F GP GTGKT+TA+A+ +LFG +
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+K LELNASD+RGI+++R IK FA + + G +KII LDEAD +T +
Sbjct: 65 -WKENFLELNASDERGIDIIRNNIKDFAKIR--PSNKLG------FKIIFLDEADQLTNE 115
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTME + TRF F CNY S+II P+ SRC RF+PL +E M ++ I E
Sbjct: 116 AQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNE 175
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQG 259
++D ++L + IS GD+R+AI +Q
Sbjct: 176 KFDIDDDSLDAIYEISDGDMRKAINVMQA 204
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 198 bits (504), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 140/213 (65%), Gaps = 9/213 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP+++ ++ Q+++V L + ++T N PH+LF G G GKTT A+A+A + FG
Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDS 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+++ E+NASD+RGI+VVR +IK FA + +G +KI+ LDEAD++T D
Sbjct: 68 -WQTNFREMNASDERGIDVVRNQIKEFARTSPLAG--------ATFKILFLDEADALTTD 118
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRRTMETY++ RF CNY S+II+P+ SRCA +RF+PL E + I E
Sbjct: 119 AQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAE 178
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
GL + AL + ++ GD+R+AI LQGAA L
Sbjct: 179 GLTVTEGALDAIVYVASGDMRKAINALQGAAIL 211
>sp|P40339|RFC4_YEAST Replication factor C subunit 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC4 PE=1 SV=1
Length = 323
Score = 198 bits (503), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 133/218 (61%), Gaps = 8/218 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS+E +
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
R+L I E + + L + ++GD+R+AI LQ
Sbjct: 173 KRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,742,707
Number of Sequences: 539616
Number of extensions: 4277350
Number of successful extensions: 21266
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 432
Number of HSP's that attempted gapping in prelim test: 19327
Number of HSP's gapped (non-prelim): 1900
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)