Query 022641
Match_columns 294
No_of_seqs 204 out of 2513
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:04:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0989 Replication factor C, 100.0 4.8E-40 1E-44 261.5 20.3 229 48-278 23-251 (346)
2 PLN03025 replication factor C 100.0 2.3E-35 5.1E-40 249.9 23.5 226 49-283 1-226 (319)
3 PRK14956 DNA polymerase III su 100.0 3E-35 6.5E-40 253.8 24.1 228 46-283 3-249 (484)
4 KOG0991 Replication factor C, 100.0 2.3E-35 4.9E-40 226.1 17.8 229 46-283 12-240 (333)
5 PRK07003 DNA polymerase III su 100.0 1.5E-34 3.2E-39 258.3 25.0 226 48-283 3-247 (830)
6 PRK14958 DNA polymerase III su 100.0 3.3E-34 7.2E-39 253.9 23.1 228 47-284 2-248 (509)
7 PRK12323 DNA polymerase III su 100.0 5E-34 1.1E-38 251.9 23.0 224 48-281 3-250 (700)
8 PRK14960 DNA polymerase III su 100.0 1.2E-33 2.6E-38 250.1 24.4 226 48-283 2-246 (702)
9 PRK14964 DNA polymerase III su 100.0 1.7E-33 3.7E-38 245.7 24.2 224 50-283 2-244 (491)
10 PRK14949 DNA polymerase III su 100.0 5.8E-33 1.3E-37 252.5 24.7 224 48-281 3-245 (944)
11 PRK07994 DNA polymerase III su 100.0 1E-32 2.2E-37 247.4 24.6 223 48-280 3-244 (647)
12 PRK14957 DNA polymerase III su 100.0 1.4E-32 3.1E-37 243.1 25.1 223 48-280 3-244 (546)
13 PRK14961 DNA polymerase III su 100.0 1.6E-32 3.4E-37 236.0 24.3 226 48-283 3-247 (363)
14 PRK06645 DNA polymerase III su 100.0 2.1E-32 4.6E-37 240.7 25.4 229 46-284 6-260 (507)
15 PRK14952 DNA polymerase III su 100.0 2.2E-32 4.7E-37 244.2 25.3 223 50-282 2-246 (584)
16 PRK14951 DNA polymerase III su 100.0 1.5E-32 3.2E-37 246.0 24.3 226 48-283 3-252 (618)
17 PRK08451 DNA polymerase III su 100.0 3E-32 6.6E-37 239.8 25.1 225 49-283 2-245 (535)
18 PRK08691 DNA polymerase III su 100.0 2.3E-32 5E-37 244.1 24.2 226 48-283 3-247 (709)
19 PRK14962 DNA polymerase III su 100.0 1.4E-32 3E-37 241.2 22.5 226 50-285 3-247 (472)
20 COG2256 MGS1 ATPase related to 100.0 2.8E-32 6.2E-37 225.1 21.0 214 49-281 12-239 (436)
21 PRK05896 DNA polymerase III su 100.0 8.4E-32 1.8E-36 238.3 24.2 225 48-282 3-246 (605)
22 PRK07764 DNA polymerase III su 100.0 1.3E-31 2.9E-36 247.5 24.8 224 49-282 3-248 (824)
23 PRK05563 DNA polymerase III su 100.0 3.2E-31 7E-36 237.9 25.3 226 48-283 3-247 (559)
24 PRK14965 DNA polymerase III su 100.0 1.9E-31 4E-36 240.5 23.9 226 48-283 3-247 (576)
25 PRK14969 DNA polymerase III su 100.0 1.8E-31 4E-36 238.0 23.5 224 48-281 3-245 (527)
26 PRK09111 DNA polymerase III su 100.0 3.2E-31 6.9E-36 238.0 24.9 227 46-282 9-259 (598)
27 PRK07133 DNA polymerase III su 100.0 3.3E-31 7.1E-36 238.9 24.7 227 46-282 3-245 (725)
28 PRK14959 DNA polymerase III su 100.0 3.1E-31 6.7E-36 235.9 23.8 227 47-283 2-247 (624)
29 COG2812 DnaX DNA polymerase II 100.0 7.1E-32 1.5E-36 234.6 17.9 226 48-283 3-247 (515)
30 PRK14953 DNA polymerase III su 100.0 8.2E-31 1.8E-35 231.1 24.7 227 47-283 2-247 (486)
31 PRK14963 DNA polymerase III su 100.0 1E-30 2.3E-35 231.1 24.9 222 51-283 4-243 (504)
32 PRK00440 rfc replication facto 100.0 3.5E-30 7.5E-35 219.6 25.2 227 47-283 3-229 (319)
33 TIGR02397 dnaX_nterm DNA polym 100.0 2.6E-30 5.6E-35 223.5 24.1 224 49-282 2-244 (355)
34 PRK06305 DNA polymerase III su 100.0 3.4E-30 7.3E-35 226.0 24.0 226 48-283 4-249 (451)
35 PRK14954 DNA polymerase III su 100.0 7E-30 1.5E-34 229.6 24.7 226 48-283 3-260 (620)
36 PRK06647 DNA polymerase III su 100.0 7.2E-30 1.6E-34 228.3 24.4 226 48-283 3-247 (563)
37 PF05496 RuvB_N: Holliday junc 100.0 2.3E-30 5E-35 200.7 17.4 196 46-263 9-228 (233)
38 PRK14955 DNA polymerase III su 100.0 9.1E-30 2E-34 221.3 22.6 225 49-283 4-260 (397)
39 PRK14971 DNA polymerase III su 100.0 1.6E-29 3.4E-34 228.6 24.9 223 47-279 3-245 (614)
40 PRK12402 replication factor C 100.0 4.7E-29 1E-33 214.3 24.7 224 49-279 3-248 (337)
41 PRK14970 DNA polymerase III su 100.0 4.9E-29 1.1E-33 215.8 24.9 226 47-282 3-235 (367)
42 PRK14948 DNA polymerase III su 100.0 4.1E-29 8.9E-34 225.9 25.1 224 47-281 2-246 (620)
43 PRK04195 replication factor C 100.0 3.6E-29 7.8E-34 222.9 23.5 214 49-279 2-224 (482)
44 PRK14950 DNA polymerase III su 100.0 8.1E-29 1.7E-33 224.6 24.8 225 48-282 3-247 (585)
45 PRK13342 recombination factor 100.0 9.3E-28 2E-32 210.1 21.1 211 50-280 1-219 (413)
46 PHA02544 44 clamp loader, smal 100.0 1.1E-26 2.4E-31 197.6 23.8 214 45-276 5-227 (316)
47 KOG0990 Replication factor C, 100.0 1E-27 2.2E-32 192.4 13.1 236 44-283 24-263 (360)
48 KOG2028 ATPase related to the 100.0 1.4E-26 3E-31 188.9 18.3 218 47-279 124-367 (554)
49 PRK00080 ruvB Holliday junctio 99.9 5.9E-26 1.3E-30 193.4 22.5 210 49-280 13-250 (328)
50 KOG2035 Replication factor C, 99.9 5.8E-26 1.3E-30 178.6 20.2 208 50-262 2-234 (351)
51 PRK13341 recombination factor 99.9 1.8E-26 4E-31 211.3 19.9 215 47-279 14-246 (725)
52 KOG1969 DNA replication checkp 99.9 1.7E-25 3.6E-30 196.6 21.1 225 50-286 260-543 (877)
53 COG2255 RuvB Holliday junction 99.9 1.5E-25 3.3E-30 177.2 18.4 206 52-279 17-250 (332)
54 TIGR02902 spore_lonB ATP-depen 99.9 2.9E-25 6.3E-30 198.9 22.2 247 33-281 38-333 (531)
55 TIGR00635 ruvB Holliday juncti 99.9 3.6E-25 7.7E-30 187.4 21.2 200 58-279 1-228 (305)
56 PRK09112 DNA polymerase III su 99.9 1.3E-23 2.8E-28 178.4 22.1 194 54-259 16-243 (351)
57 PRK04132 replication factor C 99.9 7.2E-24 1.6E-28 195.2 20.5 188 85-282 567-756 (846)
58 PRK07940 DNA polymerase III su 99.9 2E-23 4.4E-28 179.5 20.4 184 59-257 3-214 (394)
59 PRK08084 DNA replication initi 99.9 6.6E-23 1.4E-27 166.1 20.2 199 59-278 20-234 (235)
60 PRK07471 DNA polymerase III su 99.9 1.3E-22 2.8E-27 173.2 21.4 190 55-258 13-240 (365)
61 COG1222 RPT1 ATP-dependent 26S 99.9 1.2E-22 2.7E-27 165.7 17.5 205 58-283 148-395 (406)
62 COG1223 Predicted ATPase (AAA+ 99.9 2E-22 4.3E-27 157.6 16.1 215 53-284 113-359 (368)
63 PRK06893 DNA replication initi 99.9 3.6E-22 7.7E-27 161.3 18.2 202 56-278 11-228 (229)
64 PRK07399 DNA polymerase III su 99.9 8.7E-22 1.9E-26 165.1 20.5 188 59-260 2-225 (314)
65 PRK05564 DNA polymerase III su 99.9 9.2E-22 2E-26 166.6 20.6 185 59-257 2-191 (313)
66 TIGR00602 rad24 checkpoint pro 99.9 9.2E-22 2E-26 177.1 20.6 205 46-262 69-329 (637)
67 PRK08727 hypothetical protein; 99.9 2.4E-21 5.2E-26 156.8 20.6 200 59-279 17-230 (233)
68 PRK08903 DnaA regulatory inact 99.9 2.4E-21 5.3E-26 156.9 19.7 200 56-280 13-226 (227)
69 TIGR02881 spore_V_K stage V sp 99.9 3.4E-21 7.4E-26 158.9 20.1 193 59-264 4-238 (261)
70 TIGR00678 holB DNA polymerase 99.9 1.5E-21 3.2E-26 153.5 16.9 166 72-253 3-188 (188)
71 PF03215 Rad17: Rad17 cell cyc 99.9 4.8E-21 1E-25 169.6 21.2 211 46-262 4-269 (519)
72 TIGR03420 DnaA_homol_Hda DnaA 99.9 2.4E-21 5.1E-26 157.1 17.7 199 58-277 12-225 (226)
73 COG0470 HolB ATPase involved i 99.9 2.4E-21 5.1E-26 165.7 15.1 185 62-263 2-206 (325)
74 PRK08058 DNA polymerase III su 99.9 1.3E-20 2.7E-25 160.0 18.9 183 59-258 3-206 (329)
75 PRK06620 hypothetical protein; 99.9 1.4E-20 3E-25 149.8 17.7 192 50-277 8-213 (214)
76 PRK05642 DNA replication initi 99.9 3E-20 6.6E-25 150.4 19.4 199 59-278 17-233 (234)
77 TIGR02903 spore_lon_C ATP-depe 99.9 7.4E-20 1.6E-24 166.6 23.9 233 48-281 141-431 (615)
78 KOG0730 AAA+-type ATPase [Post 99.9 9.3E-21 2E-25 165.7 16.8 209 54-284 427-678 (693)
79 PRK07993 DNA polymerase III su 99.9 3.1E-20 6.6E-25 157.0 19.4 178 66-258 7-206 (334)
80 KOG1970 Checkpoint RAD17-RFC c 99.9 4.4E-20 9.5E-25 158.3 20.3 211 46-263 67-322 (634)
81 PRK05707 DNA polymerase III su 99.9 3.9E-20 8.4E-25 156.0 19.8 170 75-258 14-205 (328)
82 CHL00195 ycf46 Ycf46; Provisio 99.9 3.2E-20 7E-25 163.5 19.9 209 57-285 224-468 (489)
83 CHL00181 cbbX CbbX; Provisiona 99.9 5.3E-20 1.2E-24 152.7 19.6 191 61-264 23-254 (287)
84 PRK03992 proteasome-activating 99.9 6.7E-20 1.5E-24 158.9 19.4 209 57-286 127-378 (389)
85 PRK06871 DNA polymerase III su 99.9 1.7E-19 3.7E-24 150.9 20.8 178 66-258 7-205 (325)
86 PRK09087 hypothetical protein; 99.9 4.6E-20 9.9E-25 148.1 16.7 190 59-280 19-222 (226)
87 TIGR02880 cbbX_cfxQ probable R 99.9 1.3E-19 2.7E-24 150.7 19.9 191 61-264 22-253 (284)
88 TIGR02639 ClpA ATP-dependent C 99.9 3E-20 6.5E-25 173.3 17.8 223 46-280 167-429 (731)
89 PTZ00112 origin recognition co 99.9 4.4E-20 9.5E-25 167.2 18.0 222 61-282 755-1008(1164)
90 TIGR01241 FtsH_fam ATP-depende 99.9 8E-20 1.7E-24 163.8 19.6 206 55-281 49-296 (495)
91 PRK08769 DNA polymerase III su 99.8 2E-19 4.4E-24 150.3 19.8 178 65-258 8-210 (319)
92 PF13177 DNA_pol3_delta2: DNA 99.8 1E-19 2.2E-24 138.8 15.9 141 65-215 1-162 (162)
93 TIGR02928 orc1/cdc6 family rep 99.8 4.3E-19 9.4E-24 154.1 22.0 228 50-280 7-274 (365)
94 PRK06090 DNA polymerase III su 99.8 5.7E-19 1.2E-23 147.4 19.8 175 66-258 8-203 (319)
95 PTZ00454 26S protease regulato 99.8 4.2E-19 9.1E-24 153.3 19.2 206 57-283 141-389 (398)
96 PRK00411 cdc6 cell division co 99.8 6.3E-19 1.4E-23 154.6 20.6 231 46-280 18-282 (394)
97 CHL00176 ftsH cell division pr 99.8 5.7E-19 1.2E-23 160.3 20.0 203 57-280 179-423 (638)
98 KOG0733 Nuclear AAA ATPase (VC 99.8 3.6E-19 7.7E-24 154.3 16.6 180 59-259 188-405 (802)
99 TIGR03345 VI_ClpV1 type VI sec 99.8 6.2E-19 1.3E-23 165.7 18.6 208 46-264 172-410 (852)
100 PRK14087 dnaA chromosomal repl 99.8 9.4E-19 2E-23 153.9 18.5 217 56-280 110-348 (450)
101 KOG0734 AAA+-type ATPase conta 99.8 4.6E-19 9.9E-24 151.5 15.6 206 52-279 295-540 (752)
102 PTZ00361 26 proteosome regulat 99.8 8.6E-19 1.9E-23 152.3 17.5 208 52-283 174-427 (438)
103 COG1224 TIP49 DNA helicase TIP 99.8 4.6E-18 1E-22 138.9 19.9 125 156-281 292-433 (450)
104 PRK12422 chromosomal replicati 99.8 1.3E-18 2.9E-23 152.5 18.0 211 58-280 108-343 (445)
105 KOG0738 AAA+-type ATPase [Post 99.8 3.8E-19 8.3E-24 146.6 13.5 203 58-285 209-474 (491)
106 KOG0733 Nuclear AAA ATPase (VC 99.8 1.3E-18 2.8E-23 150.9 16.7 206 59-284 509-773 (802)
107 PRK14086 dnaA chromosomal repl 99.8 1.5E-18 3.2E-23 154.6 17.4 213 58-280 285-515 (617)
108 PRK06526 transposase; Provisio 99.8 2E-20 4.4E-25 152.2 5.1 202 1-217 17-237 (254)
109 TIGR00362 DnaA chromosomal rep 99.8 8.4E-19 1.8E-23 153.8 15.6 212 59-280 108-337 (405)
110 PRK00149 dnaA chromosomal repl 99.8 1.1E-18 2.4E-23 154.7 16.4 207 59-280 120-349 (450)
111 COG0466 Lon ATP-dependent Lon 99.8 6E-19 1.3E-23 156.0 13.0 252 26-284 280-588 (782)
112 TIGR01242 26Sp45 26S proteasom 99.8 4.6E-18 9.9E-23 147.0 18.3 206 57-279 118-362 (364)
113 PRK06964 DNA polymerase III su 99.8 1.3E-17 2.8E-22 140.6 20.1 170 68-257 8-226 (342)
114 PRK14088 dnaA chromosomal repl 99.8 3.8E-18 8.2E-23 150.0 17.4 213 59-280 103-332 (440)
115 PF00308 Bac_DnaA: Bacterial d 99.8 5.6E-18 1.2E-22 135.5 14.1 191 58-263 5-215 (219)
116 KOG0731 AAA+-type ATPase conta 99.8 8.8E-18 1.9E-22 151.3 16.8 207 57-283 307-556 (774)
117 TIGR01243 CDC48 AAA family ATP 99.8 1.2E-17 2.5E-22 156.5 18.0 207 57-285 449-715 (733)
118 COG0593 DnaA ATPase involved i 99.8 1.5E-17 3.3E-22 141.5 16.7 214 59-283 85-316 (408)
119 TIGR00763 lon ATP-dependent pr 99.8 1.8E-18 3.9E-23 162.3 12.2 216 62-283 321-589 (775)
120 PF06068 TIP49: TIP49 C-termin 99.8 1.9E-17 4.2E-22 137.3 16.5 105 156-261 279-396 (398)
121 PRK08181 transposase; Validate 99.8 1.7E-19 3.7E-24 147.4 4.4 199 1-216 24-244 (269)
122 TIGR02640 gas_vesic_GvpN gas v 99.8 1.2E-16 2.6E-21 131.7 21.1 201 67-280 8-257 (262)
123 PRK10787 DNA-binding ATP-depen 99.8 8E-18 1.7E-22 156.6 15.7 246 29-283 282-585 (784)
124 PRK05917 DNA polymerase III su 99.8 6.5E-17 1.4E-21 132.5 18.9 158 69-251 5-176 (290)
125 PRK13407 bchI magnesium chelat 99.8 1.1E-16 2.3E-21 134.8 18.5 229 56-284 3-310 (334)
126 COG1474 CDC6 Cdc6-related prot 99.8 6.1E-17 1.3E-21 138.2 16.8 223 53-279 12-264 (366)
127 TIGR03346 chaperone_ClpB ATP-d 99.7 7.3E-17 1.6E-21 152.8 18.4 208 46-264 158-396 (852)
128 KOG0728 26S proteasome regulat 99.7 8.7E-17 1.9E-21 125.7 15.4 213 50-284 136-392 (404)
129 KOG2004 Mitochondrial ATP-depe 99.7 8.9E-18 1.9E-22 148.2 10.8 222 30-259 372-640 (906)
130 KOG0739 AAA+-type ATPase [Post 99.7 5.5E-17 1.2E-21 129.7 14.2 215 58-288 130-387 (439)
131 PRK11034 clpA ATP-dependent Cl 99.7 6.1E-17 1.3E-21 149.7 16.6 222 46-279 171-432 (758)
132 COG0464 SpoVK ATPases of the A 99.7 2.3E-16 5E-21 141.9 19.0 208 57-284 238-487 (494)
133 TIGR03015 pepcterm_ATPase puta 99.7 9E-16 1.9E-20 127.7 20.2 230 47-281 9-267 (269)
134 TIGR03689 pup_AAA proteasome A 99.7 2E-16 4.3E-21 139.5 16.9 171 53-234 174-384 (512)
135 PRK10865 protein disaggregatio 99.7 1.3E-16 2.9E-21 150.5 16.9 208 46-264 163-401 (857)
136 KOG0727 26S proteasome regulat 99.7 3.3E-16 7.1E-21 122.6 15.5 197 59-279 153-395 (408)
137 PRK07276 DNA polymerase III su 99.7 1.1E-15 2.4E-20 125.8 19.4 173 65-257 6-198 (290)
138 CHL00206 ycf2 Ycf2; Provisiona 99.7 1.6E-16 3.4E-21 153.7 16.4 179 83-281 1631-1878(2281)
139 PRK07132 DNA polymerase III su 99.7 2.1E-15 4.5E-20 125.2 20.5 174 68-257 3-185 (299)
140 PRK10733 hflB ATP-dependent me 99.7 3.9E-16 8.5E-21 143.4 17.7 204 56-280 147-392 (644)
141 KOG1942 DNA helicase, TBP-inte 99.7 6.4E-16 1.4E-20 123.5 16.2 127 156-283 297-441 (456)
142 TIGR01817 nifA Nif-specific re 99.7 6.9E-16 1.5E-20 140.0 18.7 217 54-274 189-439 (534)
143 PLN00020 ribulose bisphosphate 99.7 3.6E-16 7.8E-21 130.1 15.3 149 83-249 149-331 (413)
144 CHL00095 clpC Clp protease ATP 99.7 2E-16 4.3E-21 149.5 15.4 206 47-264 165-401 (821)
145 PRK08699 DNA polymerase III su 99.7 1.3E-15 2.9E-20 128.4 18.3 135 80-224 18-182 (325)
146 PRK09183 transposase/IS protei 99.7 4.6E-18 1E-22 139.3 3.3 201 1-215 21-241 (259)
147 CHL00081 chlI Mg-protoporyphyr 99.7 2.2E-15 4.8E-20 127.1 18.9 228 57-285 13-327 (350)
148 TIGR03345 VI_ClpV1 type VI sec 99.7 5.9E-16 1.3E-20 145.8 17.0 194 61-261 566-827 (852)
149 KOG0736 Peroxisome assembly fa 99.7 6E-16 1.3E-20 137.7 15.6 213 51-284 662-936 (953)
150 TIGR02030 BchI-ChlI magnesium 99.7 3.1E-15 6.7E-20 126.3 19.1 225 59-283 2-312 (337)
151 KOG0737 AAA+-type ATPase [Post 99.7 6.4E-16 1.4E-20 127.4 14.1 189 58-263 89-310 (386)
152 TIGR02974 phageshock_pspF psp 99.7 2E-15 4.3E-20 128.1 17.7 205 64-272 2-242 (329)
153 COG0465 HflB ATP-dependent Zn 99.7 3.7E-16 8E-21 138.5 13.6 205 58-283 147-393 (596)
154 KOG0652 26S proteasome regulat 99.7 7.3E-16 1.6E-20 121.3 12.8 205 59-284 169-416 (424)
155 PRK11034 clpA ATP-dependent Cl 99.7 5.1E-16 1.1E-20 143.6 13.6 176 61-246 458-694 (758)
156 PF05673 DUF815: Protein of un 99.7 7.7E-15 1.7E-19 116.0 17.9 190 53-261 19-246 (249)
157 COG2204 AtoC Response regulato 99.7 8.3E-15 1.8E-19 126.7 19.1 213 58-274 138-385 (464)
158 COG1221 PspF Transcriptional r 99.7 3.1E-15 6.7E-20 127.1 16.0 213 55-269 72-315 (403)
159 PF00004 AAA: ATPase family as 99.7 9.7E-16 2.1E-20 113.4 10.7 109 85-212 1-131 (132)
160 KOG0740 AAA+-type ATPase [Post 99.7 1.3E-15 2.7E-20 129.8 12.6 180 53-248 145-354 (428)
161 PRK11608 pspF phage shock prot 99.7 1.2E-14 2.6E-19 123.4 18.7 211 59-273 4-250 (326)
162 COG0542 clpA ATP-binding subun 99.7 2.4E-15 5.3E-20 136.7 15.2 193 61-260 491-750 (786)
163 TIGR02329 propionate_PrpR prop 99.7 1.4E-14 3.1E-19 129.4 19.2 217 57-277 208-467 (526)
164 PRK05342 clpX ATP-dependent pr 99.6 3.8E-15 8.3E-20 129.1 14.8 173 61-245 71-356 (412)
165 PRK13531 regulatory ATPase Rav 99.6 6.2E-15 1.4E-19 127.9 16.1 214 60-283 19-286 (498)
166 KOG0735 AAA+-type ATPase [Post 99.6 8.9E-15 1.9E-19 129.4 17.1 184 59-263 665-887 (952)
167 PRK05818 DNA polymerase III su 99.6 1.2E-14 2.5E-19 116.7 15.9 159 84-260 9-194 (261)
168 TIGR02639 ClpA ATP-dependent C 99.6 7.8E-15 1.7E-19 137.3 17.1 189 61-259 454-706 (731)
169 KOG0743 AAA+-type ATPase [Post 99.6 3.1E-15 6.7E-20 126.7 12.8 153 55-229 195-385 (457)
170 PRK15424 propionate catabolism 99.6 1.8E-14 3.8E-19 128.7 18.2 216 58-274 216-479 (538)
171 TIGR01243 CDC48 AAA family ATP 99.6 1.3E-14 2.8E-19 136.1 18.3 174 56-251 173-382 (733)
172 COG3829 RocR Transcriptional r 99.6 2.1E-14 4.5E-19 124.4 17.9 217 54-274 238-491 (560)
173 PRK11388 DNA-binding transcrip 99.6 1.9E-14 4E-19 133.4 18.8 215 58-277 322-568 (638)
174 TIGR03346 chaperone_ClpB ATP-d 99.6 2.4E-14 5.1E-19 135.9 19.7 196 61-263 565-824 (852)
175 PRK10820 DNA-binding transcrip 99.6 4.5E-14 9.8E-19 127.1 19.3 215 56-274 199-448 (520)
176 CHL00095 clpC Clp protease ATP 99.6 2.3E-14 5E-19 135.6 17.8 179 61-246 509-760 (821)
177 PRK05022 anaerobic nitric oxid 99.6 5.9E-14 1.3E-18 126.3 19.6 212 59-274 185-437 (509)
178 KOG0726 26S proteasome regulat 99.6 3.8E-15 8.1E-20 119.0 10.1 205 57-283 181-429 (440)
179 KOG1968 Replication factor C, 99.6 5.3E-15 1.2E-19 137.2 12.5 208 48-263 307-538 (871)
180 TIGR01650 PD_CobS cobaltochela 99.6 3.6E-14 7.8E-19 117.9 15.4 198 55-262 39-282 (327)
181 PRK15429 formate hydrogenlyase 99.6 7.4E-14 1.6E-18 130.2 18.9 217 50-270 363-616 (686)
182 PRK10865 protein disaggregatio 99.6 1.2E-13 2.6E-18 130.6 20.1 195 59-260 566-824 (857)
183 COG3604 FhlA Transcriptional r 99.6 1.3E-13 2.7E-18 118.1 17.9 212 59-273 221-465 (550)
184 KOG0729 26S proteasome regulat 99.6 1.2E-14 2.5E-19 114.9 10.2 205 59-281 175-419 (435)
185 PF05621 TniB: Bacterial TniB 99.6 1.9E-13 4.1E-18 111.6 17.3 218 61-278 34-287 (302)
186 TIGR00382 clpX endopeptidase C 99.6 2.7E-14 5.7E-19 123.2 12.7 176 59-246 75-363 (413)
187 PF01637 Arch_ATPase: Archaeal 99.6 2.8E-14 6.1E-19 116.1 12.2 188 63-254 1-232 (234)
188 cd00009 AAA The AAA+ (ATPases 99.6 5.7E-14 1.2E-18 105.7 12.9 140 65-213 2-151 (151)
189 KOG2680 DNA helicase TIP49, TB 99.6 3.5E-13 7.6E-18 108.2 17.7 126 156-282 289-431 (454)
190 KOG0730 AAA+-type ATPase [Post 99.6 5.6E-14 1.2E-18 123.8 14.2 204 61-285 184-421 (693)
191 TIGR02442 Cob-chelat-sub cobal 99.6 2.1E-13 4.5E-18 125.5 18.5 221 59-281 2-305 (633)
192 KOG0744 AAA+-type ATPase [Post 99.6 1.1E-13 2.3E-18 112.2 13.8 184 85-277 180-411 (423)
193 KOG0742 AAA+-type ATPase [Post 99.6 9.6E-14 2.1E-18 115.9 13.2 204 59-277 353-609 (630)
194 COG0542 clpA ATP-binding subun 99.5 6.8E-14 1.5E-18 127.4 13.4 206 47-264 156-393 (786)
195 COG0714 MoxR-like ATPases [Gen 99.5 2.5E-13 5.4E-18 116.0 15.9 155 61-223 24-199 (329)
196 smart00350 MCM minichromosome 99.5 9E-13 2E-17 118.5 19.9 219 51-280 193-504 (509)
197 PF01695 IstB_IS21: IstB-like 99.5 4E-15 8.7E-20 115.0 3.4 139 46-196 10-151 (178)
198 TIGR02915 PEP_resp_reg putativ 99.5 7.8E-13 1.7E-17 118.0 18.4 212 59-274 137-383 (445)
199 PF07728 AAA_5: AAA domain (dy 99.5 8.9E-15 1.9E-19 109.3 4.8 116 84-206 1-139 (139)
200 PRK10923 glnG nitrogen regulat 99.5 9.2E-13 2E-17 118.3 18.5 213 59-275 136-383 (469)
201 KOG0735 AAA+-type ATPase [Post 99.5 5.4E-13 1.2E-17 118.3 15.8 192 82-283 431-651 (952)
202 PF01078 Mg_chelatase: Magnesi 99.5 2.4E-14 5.3E-19 111.0 6.6 117 59-182 1-133 (206)
203 COG2607 Predicted ATPase (AAA+ 99.5 1.8E-12 3.8E-17 101.1 16.5 192 53-263 52-280 (287)
204 PHA02244 ATPase-like protein 99.5 7.1E-13 1.5E-17 111.4 15.0 132 71-216 110-263 (383)
205 KOG0651 26S proteasome regulat 99.5 1.2E-13 2.5E-18 111.4 9.3 202 57-280 128-373 (388)
206 TIGR00368 Mg chelatase-related 99.5 1.7E-12 3.6E-17 115.4 16.8 156 58-217 189-394 (499)
207 COG1484 DnaC DNA replication p 99.5 2.6E-14 5.6E-19 116.6 4.8 167 15-196 37-210 (254)
208 TIGR00390 hslU ATP-dependent p 99.5 1.3E-12 2.9E-17 111.4 15.2 93 154-246 246-378 (441)
209 PRK11361 acetoacetate metaboli 99.5 3.9E-12 8.5E-17 113.9 18.0 211 61-275 143-388 (457)
210 TIGR01818 ntrC nitrogen regula 99.5 4.3E-12 9.3E-17 113.8 18.0 212 62-277 135-381 (463)
211 KOG2227 Pre-initiation complex 99.5 1.4E-12 3.1E-17 110.7 13.9 205 59-264 148-379 (529)
212 TIGR02031 BchD-ChlD magnesium 99.5 4.6E-12 9.9E-17 115.4 18.0 200 78-283 12-261 (589)
213 PRK15115 response regulator Gl 99.5 8.4E-12 1.8E-16 111.3 19.1 191 83-277 158-381 (444)
214 PRK05201 hslU ATP-dependent pr 99.4 2.2E-12 4.8E-17 110.1 14.0 92 155-246 249-380 (443)
215 TIGR00764 lon_rel lon-related 99.4 5.3E-12 1.1E-16 115.2 16.9 126 153-278 215-389 (608)
216 PRK06581 DNA polymerase III su 99.4 2.8E-11 6E-16 95.4 18.1 171 71-254 3-185 (263)
217 PRK13765 ATP-dependent proteas 99.4 2.5E-11 5.5E-16 110.4 19.6 125 153-277 224-397 (637)
218 PRK11331 5-methylcytosine-spec 99.4 1.6E-12 3.5E-17 112.2 11.2 153 60-223 174-368 (459)
219 KOG1514 Origin recognition com 99.4 1.2E-11 2.6E-16 110.0 15.7 221 62-283 397-658 (767)
220 PTZ00111 DNA replication licen 99.4 3.6E-11 7.9E-16 111.5 19.0 157 51-216 440-646 (915)
221 PRK12377 putative replication 99.4 2.8E-12 6.2E-17 103.9 10.5 152 53-215 66-236 (248)
222 PF07726 AAA_3: ATPase family 99.4 6E-13 1.3E-17 94.7 5.6 113 84-207 1-130 (131)
223 PF07724 AAA_2: AAA domain (Cd 99.4 7.5E-13 1.6E-17 101.6 6.5 106 83-196 4-131 (171)
224 COG1239 ChlI Mg-chelatase subu 99.4 8.9E-11 1.9E-15 99.4 19.2 222 58-280 14-322 (423)
225 KOG0732 AAA+-type ATPase conta 99.4 1.4E-11 2.9E-16 115.0 14.9 186 58-258 262-482 (1080)
226 COG1219 ClpX ATP-dependent pro 99.4 3E-12 6.4E-17 103.8 8.9 184 50-245 50-345 (408)
227 PF00158 Sigma54_activat: Sigm 99.4 2.6E-12 5.7E-17 98.3 7.7 143 63-209 1-165 (168)
228 PF00931 NB-ARC: NB-ARC domain 99.4 7E-12 1.5E-16 105.3 11.0 191 66-260 1-206 (287)
229 COG3267 ExeA Type II secretory 99.3 1.6E-10 3.5E-15 91.3 16.3 231 40-274 10-267 (269)
230 KOG0741 AAA+-type ATPase [Post 99.3 9.6E-12 2.1E-16 107.2 9.9 194 84-283 258-493 (744)
231 PRK10365 transcriptional regul 99.3 2.2E-10 4.7E-15 102.2 18.5 191 83-277 163-386 (441)
232 PRK08116 hypothetical protein; 99.3 3.4E-11 7.3E-16 99.3 11.7 156 52-216 76-251 (268)
233 COG3283 TyrR Transcriptional r 99.3 4.3E-10 9.2E-15 92.9 17.6 214 57-277 200-446 (511)
234 PRK09862 putative ATP-dependen 99.3 1.6E-10 3.5E-15 102.4 16.1 219 58-280 188-492 (506)
235 PRK07952 DNA replication prote 99.3 2.3E-11 5.1E-16 98.3 9.2 154 52-215 63-235 (244)
236 PRK08485 DNA polymerase III su 99.3 1.4E-10 3.1E-15 88.8 12.8 136 114-263 26-174 (206)
237 PF13173 AAA_14: AAA domain 99.3 7.6E-11 1.7E-15 86.5 10.9 120 83-219 3-127 (128)
238 KOG0482 DNA replication licens 99.3 7.9E-11 1.7E-15 101.0 12.3 228 48-288 329-646 (721)
239 PRK13406 bchD magnesium chelat 99.3 6.1E-10 1.3E-14 100.8 18.2 210 66-281 8-251 (584)
240 PRK08939 primosomal protein Dn 99.2 3.1E-11 6.7E-16 101.2 9.1 137 46-196 114-262 (306)
241 COG0606 Predicted ATPase with 99.2 1.2E-11 2.7E-16 105.9 6.2 120 58-181 176-309 (490)
242 smart00763 AAA_PrkA PrkA AAA d 99.2 2.4E-10 5.2E-15 96.3 13.8 93 151-243 232-346 (361)
243 PRK06835 DNA replication prote 99.2 1.7E-10 3.6E-15 97.5 11.4 123 83-215 184-318 (329)
244 COG1241 MCM2 Predicted ATPase 99.2 1.2E-10 2.6E-15 105.5 10.7 219 50-281 275-593 (682)
245 KOG0745 Putative ATP-dependent 99.2 7.6E-10 1.7E-14 93.5 14.5 151 83-245 227-486 (564)
246 KOG0480 DNA replication licens 99.2 1.2E-10 2.7E-15 102.4 10.0 224 50-283 334-646 (764)
247 KOG2170 ATPase of the AAA+ sup 99.2 6.5E-10 1.4E-14 89.8 13.1 176 62-246 83-319 (344)
248 PF12774 AAA_6: Hydrolytic ATP 99.2 9.5E-09 2.1E-13 82.6 19.5 167 71-263 23-226 (231)
249 PF14532 Sigma54_activ_2: Sigm 99.2 2.1E-10 4.5E-15 85.4 8.8 125 65-214 2-138 (138)
250 COG1220 HslU ATP-dependent pro 99.2 6.3E-10 1.4E-14 91.2 11.8 128 155-282 250-435 (444)
251 PRK06921 hypothetical protein; 99.1 5.3E-10 1.2E-14 92.1 11.6 122 81-215 116-255 (266)
252 COG3284 AcoR Transcriptional a 99.1 6E-10 1.3E-14 98.7 12.1 187 84-275 338-552 (606)
253 TIGR02688 conserved hypothetic 99.1 3.8E-09 8.3E-14 90.4 16.4 106 66-194 192-312 (449)
254 KOG0478 DNA replication licens 99.1 1.4E-09 2.9E-14 96.7 13.1 160 54-227 422-626 (804)
255 smart00382 AAA ATPases associa 99.1 2.2E-09 4.7E-14 79.9 12.4 99 83-194 3-125 (148)
256 PF12775 AAA_7: P-loop contain 99.1 6.1E-10 1.3E-14 92.0 9.9 147 74-229 27-195 (272)
257 PF05729 NACHT: NACHT domain 99.1 1.1E-09 2.3E-14 84.2 10.6 145 84-228 2-164 (166)
258 TIGR01128 holA DNA polymerase 99.1 7E-09 1.5E-13 87.8 16.5 132 154-285 45-183 (302)
259 PRK05629 hypothetical protein; 99.1 7.6E-09 1.6E-13 88.1 16.3 188 83-285 7-197 (318)
260 PRK07452 DNA polymerase III su 99.1 7.4E-09 1.6E-13 88.6 16.3 185 83-280 2-199 (326)
261 PRK14700 recombination factor 99.0 2.2E-09 4.7E-14 87.7 9.9 96 185-280 8-115 (300)
262 PRK04841 transcriptional regul 99.0 3.8E-08 8.2E-13 95.7 19.9 189 56-255 9-224 (903)
263 KOG0736 Peroxisome assembly fa 99.0 8E-09 1.7E-13 93.2 13.5 167 64-248 404-596 (953)
264 PRK06585 holA DNA polymerase I 99.0 8.2E-08 1.8E-12 82.8 19.3 191 81-286 19-216 (343)
265 PRK07914 hypothetical protein; 99.0 5.6E-08 1.2E-12 82.8 17.4 187 83-284 6-198 (320)
266 PRK05574 holA DNA polymerase I 99.0 1.5E-07 3.2E-12 81.2 19.5 199 72-285 7-218 (340)
267 KOG1051 Chaperone HSP104 and r 99.0 6.5E-09 1.4E-13 96.7 11.7 154 61-227 562-784 (898)
268 KOG0477 DNA replication licens 98.9 1E-08 2.2E-13 90.3 11.3 151 47-209 435-626 (854)
269 PLN03210 Resistant to P. syrin 98.9 2.2E-08 4.8E-13 98.9 15.0 195 57-256 180-395 (1153)
270 PF13401 AAA_22: AAA domain; P 98.9 5.7E-10 1.2E-14 82.3 2.4 110 83-194 5-125 (131)
271 PRK05907 hypothetical protein; 98.9 5.7E-07 1.2E-11 75.7 19.6 191 70-285 7-208 (311)
272 PRK08487 DNA polymerase III su 98.9 8.8E-07 1.9E-11 75.7 20.1 195 72-285 5-205 (328)
273 COG1618 Predicted nucleotide k 98.8 1.3E-07 2.8E-12 69.8 12.5 24 84-107 7-30 (179)
274 PF13191 AAA_16: AAA ATPase do 98.8 7.3E-09 1.6E-13 81.1 5.5 46 62-107 1-49 (185)
275 PF00493 MCM: MCM2/3/5 family 98.8 3.7E-10 8E-15 96.2 -2.6 146 61-215 24-209 (331)
276 PHA00729 NTP-binding motif con 98.8 1.3E-07 2.8E-12 75.1 11.4 125 74-225 9-138 (226)
277 KOG0741 AAA+-type ATPase [Post 98.7 4.1E-07 8.8E-12 79.2 14.4 155 84-263 540-722 (744)
278 PF14516 AAA_35: AAA-like doma 98.7 2E-06 4.4E-11 73.5 18.5 201 62-273 12-253 (331)
279 COG5271 MDN1 AAA ATPase contai 98.7 1.6E-07 3.5E-12 91.1 12.5 146 71-227 1534-1703(4600)
280 KOG0481 DNA replication licens 98.7 1E-07 2.2E-12 82.4 10.3 219 51-283 321-642 (729)
281 PRK10536 hypothetical protein; 98.7 1.7E-07 3.7E-12 75.6 10.9 60 46-107 39-99 (262)
282 PF00910 RNA_helicase: RNA hel 98.7 2.8E-08 6E-13 70.4 5.4 23 85-107 1-23 (107)
283 PF03266 NTPase_1: NTPase; In 98.7 6.6E-09 1.4E-13 79.5 1.7 63 155-220 95-164 (168)
284 COG4650 RtcR Sigma54-dependent 98.7 8E-08 1.7E-12 77.8 7.9 195 84-278 210-441 (531)
285 COG1373 Predicted ATPase (AAA+ 98.7 3.8E-06 8.3E-11 73.5 18.7 190 68-278 24-247 (398)
286 PF13604 AAA_30: AAA domain; P 98.6 8.4E-08 1.8E-12 75.7 7.0 120 69-195 6-131 (196)
287 PF07693 KAP_NTPase: KAP famil 98.6 1.6E-05 3.4E-10 68.1 20.6 109 154-262 171-320 (325)
288 KOG2228 Origin recognition com 98.6 8.9E-07 1.9E-11 73.1 11.7 165 62-227 25-219 (408)
289 PF06144 DNA_pol3_delta: DNA p 98.6 2.4E-07 5.2E-12 71.6 7.7 109 153-261 55-171 (172)
290 KOG2543 Origin recognition com 98.5 5.3E-06 1.2E-10 69.7 15.1 197 61-273 6-243 (438)
291 PHA02774 E1; Provisional 98.5 9.9E-07 2.1E-11 78.7 11.4 136 69-233 420-587 (613)
292 COG5271 MDN1 AAA ATPase contai 98.5 5.4E-07 1.2E-11 87.7 10.0 150 84-247 890-1062(4600)
293 PF04665 Pox_A32: Poxvirus A32 98.5 7.5E-06 1.6E-10 65.8 15.2 137 84-224 15-167 (241)
294 cd00561 CobA_CobO_BtuR ATP:cor 98.5 3.4E-07 7.5E-12 68.8 6.5 51 154-207 94-147 (159)
295 COG2909 MalT ATP-dependent tra 98.5 2.6E-06 5.6E-11 78.4 12.8 187 55-250 13-227 (894)
296 PF10443 RNA12: RNA12 protein; 98.5 2.5E-05 5.3E-10 67.4 17.4 75 155-230 148-232 (431)
297 PRK10875 recD exonuclease V su 98.4 1.8E-06 4E-11 79.0 10.8 108 84-194 169-301 (615)
298 PHA02624 large T antigen; Prov 98.4 2.2E-06 4.9E-11 76.8 10.2 115 73-214 421-562 (647)
299 PF03969 AFG1_ATPase: AFG1-lik 98.4 1.5E-06 3.2E-11 74.7 8.4 118 82-214 62-201 (362)
300 PRK04296 thymidine kinase; Pro 98.4 4.2E-06 9.2E-11 65.7 10.2 94 84-194 4-115 (190)
301 PF05970 PIF1: PIF1-like helic 98.4 2.2E-06 4.7E-11 74.3 9.4 111 66-180 6-127 (364)
302 KOG0479 DNA replication licens 98.4 4.8E-06 1E-10 73.5 11.3 156 62-228 302-499 (818)
303 COG1466 HolA DNA polymerase II 98.4 9E-05 1.9E-09 63.6 19.0 198 73-285 6-212 (334)
304 TIGR01447 recD exodeoxyribonuc 98.3 6.6E-06 1.4E-10 75.2 11.5 118 71-194 152-295 (586)
305 TIGR01448 recD_rel helicase, p 98.3 5.8E-06 1.3E-10 77.7 11.4 120 67-194 326-452 (720)
306 PRK13695 putative NTPase; Prov 98.3 1.1E-05 2.3E-10 62.5 11.2 70 155-227 96-172 (174)
307 PRK04132 replication factor C 98.3 6.7E-07 1.4E-11 84.0 4.9 51 48-98 6-56 (846)
308 PF10236 DAP3: Mitochondrial r 98.3 4.6E-05 9.9E-10 64.4 15.0 48 208-255 258-308 (309)
309 KOG4658 Apoptotic ATPase [Sign 98.3 7E-06 1.5E-10 78.4 11.0 193 64-259 161-365 (889)
310 COG3899 Predicted ATPase [Gene 98.3 2.2E-05 4.9E-10 75.0 14.2 107 154-261 153-265 (849)
311 PRK05986 cob(I)alamin adenolsy 98.2 4.7E-06 1E-10 64.4 7.6 51 154-207 114-167 (191)
312 PTZ00202 tuzin; Provisional 98.2 4.4E-05 9.5E-10 66.2 14.0 52 55-106 256-310 (550)
313 PF05272 VirE: Virulence-assoc 98.2 1.5E-05 3.3E-10 62.7 10.5 99 85-213 55-169 (198)
314 cd01120 RecA-like_NTPases RecA 98.2 1.5E-05 3.2E-10 60.7 10.0 23 85-107 2-24 (165)
315 PF12780 AAA_8: P-loop contain 98.2 8.9E-05 1.9E-09 61.2 14.9 156 72-244 22-226 (268)
316 PF06309 Torsin: Torsin; Inte 98.2 4.4E-06 9.5E-11 59.7 5.8 53 61-113 25-84 (127)
317 TIGR02768 TraA_Ti Ti-type conj 98.2 9.2E-06 2E-10 76.6 9.5 113 67-192 355-474 (744)
318 PRK12723 flagellar biosynthesi 98.2 4E-05 8.8E-10 66.4 12.6 149 83-232 175-340 (388)
319 PRK15455 PrkA family serine pr 98.2 3E-06 6.4E-11 75.7 5.6 94 13-106 15-127 (644)
320 KOG1051 Chaperone HSP104 and r 98.2 1.9E-05 4.1E-10 74.2 11.0 194 60-264 185-410 (898)
321 PF13207 AAA_17: AAA domain; P 98.2 2E-06 4.4E-11 62.3 3.7 22 85-106 2-23 (121)
322 TIGR00708 cobA cob(I)alamin ad 98.2 2.2E-05 4.8E-10 59.8 9.4 51 154-207 96-149 (173)
323 PRK14532 adenylate kinase; Pro 98.1 0.00012 2.5E-09 57.5 13.8 23 84-106 2-24 (188)
324 PF02562 PhoH: PhoH-like prote 98.1 8E-06 1.7E-10 64.2 7.0 36 156-194 120-155 (205)
325 PF09848 DUF2075: Uncharacteri 98.1 1.2E-05 2.6E-10 69.5 8.6 23 84-106 3-25 (352)
326 PRK08118 topology modulation p 98.1 3.8E-05 8.2E-10 58.9 10.3 23 84-106 3-25 (167)
327 KOG3347 Predicted nucleotide k 98.1 3E-06 6.5E-11 61.7 3.7 33 81-119 6-38 (176)
328 PRK05703 flhF flagellar biosyn 98.1 4.2E-05 9.2E-10 67.4 11.5 147 83-233 222-386 (424)
329 TIGR02858 spore_III_AA stage I 98.1 3.8E-05 8.2E-10 63.4 10.5 29 78-106 107-135 (270)
330 PF13671 AAA_33: AAA domain; P 98.1 8.6E-06 1.9E-10 60.8 6.1 22 85-106 2-23 (143)
331 COG1419 FlhF Flagellar GTP-bin 98.1 6.8E-05 1.5E-09 64.2 12.0 135 82-217 203-351 (407)
332 cd00046 DEXDc DEAD-like helica 98.1 2E-05 4.4E-10 58.1 7.9 24 84-107 2-25 (144)
333 PF04851 ResIII: Type III rest 98.1 1.8E-05 4E-10 61.5 8.0 43 65-107 7-50 (184)
334 PRK14974 cell division protein 98.1 3.6E-05 7.7E-10 65.5 10.1 24 84-107 142-165 (336)
335 cd01128 rho_factor Transcripti 98.1 1.4E-05 2.9E-10 65.3 7.2 29 80-108 14-42 (249)
336 PRK07261 topology modulation p 98.1 2.6E-05 5.5E-10 60.2 8.3 23 84-106 2-24 (171)
337 PRK14722 flhF flagellar biosyn 98.1 2.2E-05 4.9E-10 67.4 8.6 24 83-106 138-161 (374)
338 TIGR01359 UMP_CMP_kin_fam UMP- 98.1 7.6E-05 1.6E-09 58.2 11.0 22 85-106 2-23 (183)
339 COG3854 SpoIIIAA ncharacterize 98.0 3.3E-05 7.2E-10 60.7 8.5 34 73-106 128-161 (308)
340 PRK13889 conjugal transfer rel 98.0 4.1E-05 8.8E-10 73.7 10.5 114 67-193 349-469 (988)
341 PF00448 SRP54: SRP54-type pro 98.0 8.6E-06 1.9E-10 64.1 5.0 146 84-231 3-167 (196)
342 PRK13826 Dtr system oriT relax 98.0 5.3E-05 1.2E-09 73.4 10.9 104 82-193 397-504 (1102)
343 PRK12727 flagellar biosynthesi 98.0 6.5E-05 1.4E-09 67.0 10.3 24 83-106 351-374 (559)
344 PRK14528 adenylate kinase; Pro 98.0 0.00028 6.1E-09 55.2 12.9 24 83-106 2-25 (186)
345 COG2842 Uncharacterized ATPase 98.0 8.4E-05 1.8E-09 60.8 9.9 160 84-267 96-282 (297)
346 COG2884 FtsE Predicted ATPase 98.0 0.00024 5.2E-09 54.4 11.5 57 154-210 154-211 (223)
347 PF13245 AAA_19: Part of AAA d 97.9 1.6E-05 3.4E-10 52.2 4.4 25 83-107 11-35 (76)
348 TIGR00767 rho transcription te 97.9 2.6E-05 5.5E-10 67.1 6.4 28 80-107 166-193 (415)
349 cd03216 ABC_Carb_Monos_I This 97.9 0.00017 3.6E-09 55.2 10.4 110 82-196 26-143 (163)
350 COG4088 Predicted nucleotide k 97.9 0.00011 2.4E-09 56.9 9.1 24 84-107 3-26 (261)
351 PF08303 tRNA_lig_kinase: tRNA 97.9 0.001 2.2E-08 49.8 14.0 124 85-230 2-146 (168)
352 TIGR01618 phage_P_loop phage n 97.9 1.6E-05 3.4E-10 63.3 4.8 22 83-104 13-34 (220)
353 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 0.00017 3.7E-09 53.9 9.9 95 83-196 27-128 (144)
354 cd01428 ADK Adenylate kinase ( 97.9 0.00019 4.2E-09 56.4 10.6 22 85-106 2-23 (194)
355 PRK09376 rho transcription ter 97.9 1.4E-05 3E-10 68.4 4.2 29 80-108 167-195 (416)
356 cd03213 ABCG_EPDR ABCG transpo 97.9 7.1E-05 1.5E-09 59.0 7.9 43 154-196 128-172 (194)
357 PRK00625 shikimate kinase; Pro 97.9 1.7E-05 3.8E-10 61.0 4.1 31 84-120 2-32 (173)
358 PRK00771 signal recognition pa 97.9 9E-05 2E-09 65.3 9.0 25 83-107 96-120 (437)
359 cd03222 ABC_RNaseL_inhibitor T 97.9 0.00023 5E-09 55.0 10.2 102 81-195 24-132 (177)
360 cd02020 CMPK Cytidine monophos 97.9 0.00094 2E-08 49.9 13.5 30 85-120 2-31 (147)
361 PF01745 IPT: Isopentenyl tran 97.8 0.00019 4.2E-09 56.0 9.6 143 85-246 4-160 (233)
362 PF13337 Lon_2: Putative ATP-d 97.8 0.00013 2.8E-09 63.6 9.5 171 83-279 209-430 (457)
363 PRK00131 aroK shikimate kinase 97.8 2.3E-05 4.9E-10 60.6 4.6 25 82-106 4-28 (175)
364 cd03247 ABCC_cytochrome_bd The 97.8 0.00025 5.5E-09 55.1 10.4 44 154-197 115-159 (178)
365 PRK06547 hypothetical protein; 97.8 3.8E-05 8.3E-10 59.1 5.6 32 75-106 8-39 (172)
366 cd03228 ABCC_MRP_Like The MRP 97.8 0.00032 7E-09 54.1 10.8 44 154-197 113-157 (171)
367 PF00519 PPV_E1_C: Papillomavi 97.8 6.3E-05 1.4E-09 63.9 7.2 131 70-229 249-411 (432)
368 COG1126 GlnQ ABC-type polar am 97.8 0.00031 6.8E-09 54.9 10.5 51 154-205 153-205 (240)
369 PRK13900 type IV secretion sys 97.8 0.00027 5.8E-09 60.3 11.2 24 83-106 161-184 (332)
370 PRK03839 putative kinase; Prov 97.8 1.9E-05 4.1E-10 61.5 3.9 23 84-106 2-24 (180)
371 COG4178 ABC-type uncharacteriz 97.8 7.2E-05 1.6E-09 67.6 8.0 43 153-195 531-574 (604)
372 PRK05800 cobU adenosylcobinami 97.8 0.00024 5.2E-09 54.6 9.9 23 84-106 3-25 (170)
373 PRK11889 flhF flagellar biosyn 97.8 0.00013 2.9E-09 62.7 9.1 145 83-231 242-404 (436)
374 PRK13947 shikimate kinase; Pro 97.8 2.1E-05 4.6E-10 60.6 4.1 30 84-119 3-32 (171)
375 cd00267 ABC_ATPase ABC (ATP-bi 97.8 0.00028 6.1E-09 53.5 10.1 108 83-196 26-141 (157)
376 cd03214 ABC_Iron-Siderophores_ 97.8 0.00025 5.4E-09 55.2 10.0 43 154-196 114-159 (180)
377 COG0703 AroK Shikimate kinase 97.8 2.3E-05 4.9E-10 59.4 3.9 32 83-120 3-34 (172)
378 PRK13808 adenylate kinase; Pro 97.8 0.00068 1.5E-08 57.4 13.0 23 84-106 2-24 (333)
379 PRK06762 hypothetical protein; 97.8 0.00041 8.8E-09 53.2 11.0 23 84-106 4-26 (166)
380 cd03238 ABC_UvrA The excision 97.8 0.00047 1E-08 53.3 11.1 41 156-196 108-150 (176)
381 PRK02496 adk adenylate kinase; 97.8 0.00035 7.5E-09 54.6 10.5 23 84-106 3-25 (184)
382 COG1936 Predicted nucleotide k 97.8 2.3E-05 4.9E-10 58.9 3.5 22 84-106 2-23 (180)
383 smart00487 DEXDc DEAD-like hel 97.8 0.00026 5.7E-09 55.4 9.9 24 83-106 25-48 (201)
384 cd01131 PilT Pilus retraction 97.8 0.00039 8.4E-09 55.0 10.7 24 84-107 3-26 (198)
385 TIGR00150 HI0065_YjeE ATPase, 97.8 7.8E-05 1.7E-09 54.4 6.0 24 84-107 24-47 (133)
386 COG0563 Adk Adenylate kinase a 97.8 0.00052 1.1E-08 53.1 10.9 23 84-106 2-24 (178)
387 cd03246 ABCC_Protease_Secretio 97.8 0.00063 1.4E-08 52.6 11.4 43 154-196 113-157 (173)
388 PF13086 AAA_11: AAA domain; P 97.8 3.4E-05 7.5E-10 62.5 4.6 37 68-106 5-41 (236)
389 cd03223 ABCD_peroxisomal_ALDP 97.8 0.00012 2.7E-09 56.1 7.4 112 83-196 28-149 (166)
390 PLN02674 adenylate kinase 97.7 0.00099 2.1E-08 54.1 12.7 25 82-106 31-55 (244)
391 PRK13949 shikimate kinase; Pro 97.7 3.2E-05 6.9E-10 59.5 4.0 23 84-106 3-25 (169)
392 PHA02530 pseT polynucleotide k 97.7 0.00083 1.8E-08 56.8 13.0 23 84-106 4-26 (300)
393 PRK14712 conjugal transfer nic 97.7 0.00037 8E-09 70.0 12.2 124 66-194 837-967 (1623)
394 cd03230 ABC_DR_subfamily_A Thi 97.7 6.6E-05 1.4E-09 58.1 5.8 43 154-196 112-156 (173)
395 cd00464 SK Shikimate kinase (S 97.7 3.5E-05 7.6E-10 58.3 4.2 23 84-106 1-23 (154)
396 TIGR02788 VirB11 P-type DNA tr 97.7 0.0007 1.5E-08 57.4 12.3 24 83-106 145-168 (308)
397 TIGR02782 TrbB_P P-type conjug 97.7 0.00058 1.3E-08 57.5 11.6 37 68-106 120-156 (299)
398 PF00437 T2SE: Type II/IV secr 97.7 0.00032 6.9E-09 58.4 10.0 49 59-107 102-152 (270)
399 PRK13709 conjugal transfer nic 97.7 0.00024 5.3E-09 72.0 10.7 124 66-194 969-1099(1747)
400 PF01443 Viral_helicase1: Vira 97.7 4.5E-05 9.8E-10 62.0 4.8 21 85-105 1-21 (234)
401 cd02019 NK Nucleoside/nucleoti 97.7 4.1E-05 8.9E-10 49.3 3.5 22 85-106 2-23 (69)
402 PRK14530 adenylate kinase; Pro 97.7 4.3E-05 9.4E-10 61.3 4.3 24 83-106 4-27 (215)
403 COG1485 Predicted ATPase [Gene 97.7 4.9E-05 1.1E-09 63.6 4.6 25 83-107 66-90 (367)
404 cd03215 ABC_Carb_Monos_II This 97.7 0.00013 2.8E-09 56.9 6.8 42 154-195 121-164 (182)
405 PRK06217 hypothetical protein; 97.7 4.4E-05 9.4E-10 59.6 4.0 23 84-106 3-25 (183)
406 PRK00279 adk adenylate kinase; 97.7 0.0007 1.5E-08 54.3 11.1 23 84-106 2-24 (215)
407 cd01124 KaiC KaiC is a circadi 97.7 0.00032 7E-09 54.8 9.0 23 85-107 2-24 (187)
408 PF13238 AAA_18: AAA domain; P 97.7 3.3E-05 7.2E-10 56.3 3.1 22 85-106 1-22 (129)
409 PF08433 KTI12: Chromatin asso 97.7 0.00053 1.1E-08 56.7 10.4 93 84-191 3-105 (270)
410 cd03232 ABC_PDR_domain2 The pl 97.7 0.00022 4.8E-09 56.1 7.8 43 154-196 125-169 (192)
411 PRK12724 flagellar biosynthesi 97.7 0.00013 2.8E-09 63.4 6.8 145 84-232 225-387 (432)
412 cd01129 PulE-GspE PulE/GspE Th 97.7 0.0014 3.1E-08 54.2 12.6 49 58-107 57-105 (264)
413 COG2804 PulE Type II secretory 97.7 0.0015 3.3E-08 57.7 13.2 53 56-109 233-285 (500)
414 TIGR03574 selen_PSTK L-seryl-t 97.7 0.00039 8.4E-09 57.1 9.3 22 85-106 2-23 (249)
415 KOG1808 AAA ATPase containing 97.7 0.00016 3.4E-09 72.7 8.0 146 72-227 431-599 (1856)
416 COG1119 ModF ABC-type molybden 97.6 0.00081 1.8E-08 53.7 10.3 54 154-207 188-245 (257)
417 COG1102 Cmk Cytidylate kinase 97.6 5.5E-05 1.2E-09 56.1 3.5 22 85-106 3-24 (179)
418 cd00227 CPT Chloramphenicol (C 97.6 6.5E-05 1.4E-09 58.2 4.1 24 83-106 3-26 (175)
419 cd02021 GntK Gluconate kinase 97.6 5.8E-05 1.3E-09 56.8 3.7 22 85-106 2-23 (150)
420 TIGR02237 recomb_radB DNA repa 97.6 0.00062 1.3E-08 54.3 9.8 45 84-132 14-58 (209)
421 PRK12726 flagellar biosynthesi 97.6 0.00023 5E-09 61.0 7.5 95 83-181 207-313 (407)
422 KOG0922 DEAH-box RNA helicase 97.6 0.00098 2.1E-08 60.2 11.7 37 68-106 54-90 (674)
423 TIGR01313 therm_gnt_kin carboh 97.6 5.4E-05 1.2E-09 57.9 3.5 22 85-106 1-22 (163)
424 PRK13948 shikimate kinase; Pro 97.6 8.6E-05 1.9E-09 57.6 4.6 33 82-120 10-42 (182)
425 cd03229 ABC_Class3 This class 97.6 9.6E-05 2.1E-09 57.4 4.8 43 154-196 117-162 (178)
426 PRK06696 uridine kinase; Valid 97.6 0.00013 2.8E-09 58.9 5.7 42 66-107 3-47 (223)
427 TIGR01613 primase_Cterm phage/ 97.6 0.00024 5.3E-09 60.1 7.7 131 61-212 48-202 (304)
428 TIGR03499 FlhF flagellar biosy 97.6 0.00015 3.3E-09 60.5 6.3 24 84-107 196-219 (282)
429 cd03115 SRP The signal recogni 97.6 0.0003 6.5E-09 54.3 7.5 23 85-107 3-25 (173)
430 PRK14531 adenylate kinase; Pro 97.6 8.1E-05 1.8E-09 58.1 4.3 23 84-106 4-26 (183)
431 PF00406 ADK: Adenylate kinase 97.6 0.001 2.2E-08 50.1 10.1 20 87-106 1-20 (151)
432 TIGR01420 pilT_fam pilus retra 97.6 0.0009 1.9E-08 57.6 11.0 25 83-107 123-147 (343)
433 COG1643 HrpA HrpA-like helicas 97.6 0.001 2.2E-08 62.9 12.1 121 68-193 53-203 (845)
434 PRK13851 type IV secretion sys 97.6 0.0011 2.5E-08 56.7 11.4 24 83-106 163-186 (344)
435 PRK12608 transcription termina 97.6 0.00013 2.8E-09 62.4 5.6 28 80-107 131-158 (380)
436 PRK05057 aroK shikimate kinase 97.6 9.3E-05 2E-09 57.1 4.4 24 83-106 5-28 (172)
437 cd03283 ABC_MutS-like MutS-lik 97.6 0.0013 2.9E-08 51.9 10.8 24 83-106 26-49 (199)
438 PRK14721 flhF flagellar biosyn 97.6 0.00066 1.4E-08 59.5 9.7 23 84-106 193-215 (420)
439 cd03233 ABC_PDR_domain1 The pl 97.6 0.0012 2.5E-08 52.5 10.4 25 83-107 34-58 (202)
440 PRK09361 radB DNA repair and r 97.5 0.00061 1.3E-08 55.1 8.9 36 84-122 25-60 (225)
441 PTZ00088 adenylate kinase 1; P 97.5 9.4E-05 2E-09 59.7 4.1 23 84-106 8-30 (229)
442 TIGR00174 miaA tRNA isopenteny 97.5 0.0017 3.7E-08 54.0 11.6 22 85-106 2-23 (287)
443 KOG3928 Mitochondrial ribosome 97.5 0.0053 1.1E-07 52.7 14.4 54 205-258 402-458 (461)
444 TIGR00064 ftsY signal recognit 97.5 0.00059 1.3E-08 56.6 8.9 24 84-107 74-97 (272)
445 PRK05973 replicative DNA helic 97.5 0.00058 1.2E-08 55.2 8.5 23 84-106 66-88 (237)
446 PRK13946 shikimate kinase; Pro 97.5 0.00011 2.4E-09 57.4 4.2 32 83-120 11-42 (184)
447 TIGR01360 aden_kin_iso1 adenyl 97.5 0.00011 2.5E-09 57.4 4.3 24 83-106 4-27 (188)
448 PF13479 AAA_24: AAA domain 97.5 8.7E-05 1.9E-09 59.4 3.6 20 84-103 5-24 (213)
449 cd03243 ABC_MutS_homologs The 97.5 0.0012 2.6E-08 52.3 10.2 22 83-104 30-51 (202)
450 PRK06067 flagellar accessory p 97.5 0.0021 4.4E-08 52.3 11.7 23 84-106 27-49 (234)
451 cd00544 CobU Adenosylcobinamid 97.5 0.00087 1.9E-08 51.4 8.8 32 85-122 2-33 (169)
452 PRK11823 DNA repair protein Ra 97.5 0.0011 2.3E-08 59.2 10.4 36 84-122 82-117 (446)
453 TIGR02760 TraI_TIGR conjugativ 97.5 0.00095 2E-08 69.4 11.3 121 66-193 431-565 (1960)
454 PRK03731 aroL shikimate kinase 97.5 0.00015 3.1E-09 56.0 4.3 30 84-119 4-33 (171)
455 KOG3354 Gluconate kinase [Carb 97.5 0.0011 2.3E-08 49.0 8.3 23 84-106 14-36 (191)
456 PRK00091 miaA tRNA delta(2)-is 97.5 0.00039 8.4E-09 58.6 7.0 23 84-106 6-28 (307)
457 PRK10867 signal recognition pa 97.5 0.00078 1.7E-08 59.4 9.0 24 84-107 102-125 (433)
458 cd03281 ABC_MSH5_euk MutS5 hom 97.4 0.0017 3.7E-08 51.9 10.2 22 83-104 30-51 (213)
459 COG2274 SunT ABC-type bacterio 97.4 0.00079 1.7E-08 63.0 9.3 44 153-196 625-669 (709)
460 cd03239 ABC_SMC_head The struc 97.4 0.0033 7.2E-08 48.7 11.4 55 155-211 116-172 (178)
461 cd01121 Sms Sms (bacterial rad 97.4 0.0012 2.5E-08 57.3 9.7 24 84-107 84-107 (372)
462 COG1061 SSL2 DNA or RNA helica 97.4 0.0011 2.4E-08 59.1 9.8 39 66-106 41-79 (442)
463 cd03282 ABC_MSH4_euk MutS4 hom 97.4 0.0025 5.4E-08 50.6 10.7 23 83-105 30-52 (204)
464 PF05707 Zot: Zonular occluden 97.4 0.00038 8.1E-09 54.8 6.0 53 155-207 79-138 (193)
465 TIGR01425 SRP54_euk signal rec 97.4 0.0026 5.5E-08 55.9 11.6 24 84-107 102-125 (429)
466 cd03227 ABC_Class2 ABC-type Cl 97.4 0.0029 6.3E-08 48.3 10.7 23 84-106 23-45 (162)
467 PF08298 AAA_PrkA: PrkA AAA do 97.4 0.00031 6.7E-09 59.4 5.6 46 61-106 61-112 (358)
468 cd01125 repA Hexameric Replica 97.4 0.0037 8.1E-08 51.0 12.0 39 85-123 4-51 (239)
469 TIGR02322 phosphon_PhnN phosph 97.4 0.00014 3.1E-09 56.5 3.4 23 84-106 3-25 (179)
470 PRK14529 adenylate kinase; Pro 97.4 0.0019 4.2E-08 51.7 9.9 23 84-106 2-24 (223)
471 TIGR01351 adk adenylate kinase 97.4 0.00017 3.6E-09 57.7 3.8 22 85-106 2-23 (210)
472 COG1116 TauB ABC-type nitrate/ 97.4 0.00012 2.7E-09 58.5 3.0 25 82-106 29-53 (248)
473 PRK08233 hypothetical protein; 97.4 0.00014 3E-09 56.6 3.3 23 84-106 5-27 (182)
474 cd01130 VirB11-like_ATPase Typ 97.4 0.00034 7.3E-09 54.7 5.4 37 68-106 13-49 (186)
475 PRK08154 anaerobic benzoate ca 97.4 0.00031 6.6E-09 59.6 5.5 31 83-119 134-164 (309)
476 TIGR01967 DEAH_box_HrpA ATP-de 97.4 0.0021 4.4E-08 63.7 11.7 37 68-106 70-106 (1283)
477 COG4608 AppF ABC-type oligopep 97.4 0.0017 3.7E-08 52.8 9.4 110 81-194 38-169 (268)
478 PRK08533 flagellar accessory p 97.4 0.0025 5.5E-08 51.6 10.5 23 84-106 26-48 (230)
479 PRK14527 adenylate kinase; Pro 97.4 0.00019 4.1E-09 56.4 3.8 25 82-106 6-30 (191)
480 PLN02200 adenylate kinase fami 97.4 0.00022 4.8E-09 57.8 4.2 23 84-106 45-67 (234)
481 TIGR02868 CydC thiol reductant 97.4 0.002 4.4E-08 59.0 11.0 40 154-193 487-527 (529)
482 cd01394 radB RadB. The archaea 97.4 0.0041 8.8E-08 50.0 11.6 36 84-122 21-56 (218)
483 TIGR00643 recG ATP-dependent D 97.4 0.0013 2.8E-08 61.5 9.8 37 65-101 239-275 (630)
484 PTZ00293 thymidine kinase; Pro 97.4 0.00022 4.8E-09 56.2 4.1 23 84-106 6-29 (211)
485 PRK05541 adenylylsulfate kinas 97.4 0.00022 4.8E-09 55.3 4.0 25 83-107 8-32 (176)
486 COG3839 MalK ABC-type sugar tr 97.4 0.00014 3E-09 61.5 3.1 23 84-106 31-53 (338)
487 TIGR02533 type_II_gspE general 97.4 0.0063 1.4E-07 54.9 13.6 49 58-107 219-267 (486)
488 COG4619 ABC-type uncharacteriz 97.4 0.00019 4.2E-09 53.8 3.4 24 83-106 30-53 (223)
489 PRK11176 lipid transporter ATP 97.4 0.0018 3.9E-08 60.1 10.6 42 154-195 497-539 (582)
490 KOG2383 Predicted ATPase [Gene 97.4 0.0016 3.5E-08 55.5 9.2 25 82-106 114-138 (467)
491 PRK04040 adenylate kinase; Pro 97.3 0.00018 3.8E-09 56.3 3.3 23 84-106 4-26 (188)
492 cd03240 ABC_Rad50 The catalyti 97.3 0.0013 2.8E-08 52.2 8.3 43 154-196 138-184 (204)
493 PF13521 AAA_28: AAA domain; P 97.3 0.00014 3E-09 55.6 2.7 21 85-105 2-22 (163)
494 COG1067 LonB Predicted ATP-dep 97.3 0.003 6.5E-08 58.3 11.6 227 53-279 96-398 (647)
495 PRK13833 conjugal transfer pro 97.3 0.00045 9.7E-09 58.5 5.8 36 69-106 133-168 (323)
496 TIGR02524 dot_icm_DotB Dot/Icm 97.3 0.00043 9.3E-09 59.7 5.8 26 82-107 134-159 (358)
497 COG1121 ZnuC ABC-type Mn/Zn tr 97.3 0.00081 1.8E-08 54.5 7.0 46 153-198 155-202 (254)
498 TIGR02203 MsbA_lipidA lipid A 97.3 0.0021 4.5E-08 59.6 10.7 42 154-195 486-528 (571)
499 cd01878 HflX HflX subfamily. 97.3 0.016 3.5E-07 45.9 14.5 24 83-106 42-65 (204)
500 TIGR00376 DNA helicase, putati 97.3 0.00058 1.3E-08 63.5 6.9 40 66-107 159-198 (637)
No 1
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=4.8e-40 Score=261.53 Aligned_cols=229 Identities=57% Similarity=0.910 Sum_probs=207.7
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcch
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 127 (294)
.+.|+++|+|+.++++.|++.++..|...+.....|+++|+||||||||+.|.+++++++|++...+.+.+.++++.++.
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi 102 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI 102 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc
Confidence 34599999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhcccc
Q 022641 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~ 207 (294)
...+..+..+........ .........+.++||||+|.|+.++++.|++.|+.++...++|++||....+.+.+.+||.
T Consensus 103 svvr~Kik~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 103 SVVREKIKNFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred cchhhhhcCHHHHhhccc-cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 999988888877655443 3334455667899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhcc
Q 022641 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278 (294)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~ 278 (294)
.+.|+++..+.+...|+.++.++|+.++++++..|++.++||+|.|+++||.++. .++.||...+.+.++
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~-~gk~It~~~~~e~~~ 251 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL-LGKRITTSLVNEELA 251 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhc-cCcccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998 477788544444444
No 2
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=2.3e-35 Score=249.92 Aligned_cols=226 Identities=46% Similarity=0.719 Sum_probs=196.0
Q ss_pred chhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchh
Q 022641 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (294)
.||.++|+|..+++++|+++++..|..++..+..++++|+||||||||++|++++++++|+.+ ...++++++++..+.+
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~eln~sd~~~~~ 79 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-KEAVLELNASDDRGID 79 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-ccceeeecccccccHH
Confidence 489999999999999999999999999999988899999999999999999999999977542 3457788888888888
Q ss_pred HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccE
Q 022641 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~ 208 (294)
.++..+..+....... ..++..+++|||+|.++...++.|++.++.++....+|++||....+.+++.+||..
T Consensus 80 ~vr~~i~~~~~~~~~~-------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 80 VVRNKIKMFAQKKVTL-------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHHHHHHHhccccC-------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 7777766654332111 113467999999999999999999999998888888999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhcccccCC
Q 022641 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~ 283 (294)
+.|.+++.+++..++.++++++|+.+++++++.+++.++||+|.+++.||.+.. ....||.+++.++++...++
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~-~~~~i~~~~v~~~~~~~~~~ 226 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHS-GFGFVNQENVFKVCDQPHPL 226 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHcCCCCHH
Confidence 999999999999999999999999999999999999999999999999995543 24579999999887765544
No 3
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3e-35 Score=253.84 Aligned_cols=228 Identities=29% Similarity=0.464 Sum_probs=197.1
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc-------------
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~------------- 111 (294)
....||.++|+|..|++++|+++++..|..++..++.++ ++|+||+|||||++|+.+++.+.|...
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 346799999999999999999999999999999998776 899999999999999999999987531
Q ss_pred -----cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcc
Q 022641 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (294)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~ 186 (294)
....++++++....+.+.++.....+..... .+++.|+||||+|+++...++.|++.+++++.++
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~----------~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~v 152 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPM----------GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHI 152 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhh----------cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCce
Confidence 1224666776666667777766555443221 1345799999999999999999999999999999
Q ss_pred eEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 022641 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (294)
Q Consensus 187 ~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~ 266 (294)
.+|++|+.+..+.+++++||+.+.|.+++.+++..++++++..+|+.++++++..|++.++|++|.++++|+.+..+.+.
T Consensus 153 iFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~ 232 (484)
T PRK14956 153 VFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDS 232 (484)
T ss_pred EEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987766666
Q ss_pred CCChhhhhhhcccccCC
Q 022641 267 SITSKDLISVSGYPTGG 283 (294)
Q Consensus 267 ~it~~~v~~~~~~~~~~ 283 (294)
.||.+.|.++++....+
T Consensus 233 ~it~~~V~~~lg~~~~~ 249 (484)
T PRK14956 233 KLTGVKIRKMIGYHGIE 249 (484)
T ss_pred CcCHHHHHHHhCCCCHH
Confidence 79999999988765433
No 4
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-35 Score=226.09 Aligned_cols=229 Identities=45% Similarity=0.711 Sum_probs=207.9
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
....||+++|+|..+.+++|+++.+..|.-....+.-||++|.|||||||||.+.++|+++.++. +...+.++|+++.+
T Consensus 12 ~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~-~ke~vLELNASdeR 90 (333)
T KOG0991|consen 12 KYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDS-YKEAVLELNASDER 90 (333)
T ss_pred cccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChh-hhhHhhhccCcccc
Confidence 45678999999999999999999999999999999999999999999999999999999996543 34578899999999
Q ss_pred chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhcc
Q 022641 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r 205 (294)
+.+.++..++.+...... .+.++..+||+||+|.+...+++.|.+.|+-+....+++++||....+..++.+|
T Consensus 91 GIDvVRn~IK~FAQ~kv~-------lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSR 163 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVT-------LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSR 163 (333)
T ss_pred ccHHHHHHHHHHHHhhcc-------CCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhh
Confidence 999999999998876544 3345677999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhcccccCC
Q 022641 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~ 283 (294)
|.++.|..+++.++...+..+++.+++.++++.++.+.--+.||.|+++|.||..... -.-++.+.|.++++.+.+.
T Consensus 164 CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g-~g~Vn~enVfKv~d~PhP~ 240 (333)
T KOG0991|consen 164 CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNG-FGLVNQENVFKVCDEPHPL 240 (333)
T ss_pred hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhcc-ccccchhhhhhccCCCChH
Confidence 9999999999999999999999999999999999999999999999999999966543 3458888998888887664
No 5
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.5e-34 Score=258.28 Aligned_cols=226 Identities=26% Similarity=0.381 Sum_probs=198.1
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
++.|.+||+|.+|++++||+++++.|.+++..++.++ +||+||+|||||++++.+++.++|....
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 5689999999999999999999999999999988777 5999999999999999999999875321
Q ss_pred ----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
...+++++..+..+.+.++..+........ .+++.|+||||+|+|+...++.|++.|++.+.++.|
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~----------~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPV----------DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccc----------cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 124677777777777777777765443221 234679999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++||+...+.+.+++||..+.|.+++.+++..+|++++..+++.++++.+..|++.++|++|.++++++.+..+....|
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~I 232 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEV 232 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887777789
Q ss_pred ChhhhhhhcccccCC
Q 022641 269 TSKDLISVSGYPTGG 283 (294)
Q Consensus 269 t~~~v~~~~~~~~~~ 283 (294)
+.+.|..+++.....
T Consensus 233 t~~~V~~~LG~~d~~ 247 (830)
T PRK07003 233 TETAVSGMLGALDQT 247 (830)
T ss_pred CHHHHHHHhCCCCHH
Confidence 999999888776443
No 6
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.3e-34 Score=253.89 Aligned_cols=228 Identities=23% Similarity=0.346 Sum_probs=201.2
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc-------------
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~------------- 112 (294)
..++|.++|+|..|++++|++.++..|..++..++.++ ++|+||+|||||++|+++++.+.|....
T Consensus 2 ~y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 2 AHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred CchhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 35689999999999999999999999999999998888 7999999999999999999999875422
Q ss_pred -----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcce
Q 022641 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (294)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ 187 (294)
...++++++.+..+.+.++..+......+. .+++.|+||||+|+++...++.|++.+++++.++.
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~----------~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPT----------KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhccc----------cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 224677787777788888877665443321 23567999999999999999999999999999999
Q ss_pred EEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCC
Q 022641 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (294)
Q Consensus 188 ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~ 267 (294)
+|++|+++..+++.+.+||..+.|.+++.+++..++.++++.+|+.++++++..+++.++|++|.+++.++.++.+.++.
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~ 231 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGK 231 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776678
Q ss_pred CChhhhhhhcccccCCC
Q 022641 268 ITSKDLISVSGYPTGGS 284 (294)
Q Consensus 268 it~~~v~~~~~~~~~~~ 284 (294)
||.++|..+++...++.
T Consensus 232 It~~~V~~~lg~~~~~~ 248 (509)
T PRK14958 232 VLIADVKTMLGTIEPLL 248 (509)
T ss_pred cCHHHHHHHHCCCCHHH
Confidence 99999999998876553
No 7
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5e-34 Score=251.93 Aligned_cols=224 Identities=26% Similarity=0.395 Sum_probs=197.7
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc---------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (294)
+++|.+||+|..|++++|++++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 5689999999999999999999999999999999888 699999999999999999999988321
Q ss_pred --------cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc
Q 022641 112 --------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183 (294)
Q Consensus 112 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~ 183 (294)
....+++++..+..+++.+++.+........ .+++.|+||||+|+|+...+|.|++.||+.+
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~----------~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPT----------AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchh----------cCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 1125667777777778888877766544321 2346799999999999999999999999999
Q ss_pred CcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 022641 184 KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (294)
Q Consensus 184 ~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 263 (294)
.++.||++|+.+..+++.+++||..+.|.+++.+++..++.+++..+++.++++++..|++.++|++|.++++++.+..+
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~ 232 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAY 232 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred hCCCCChhhhhhhccccc
Q 022641 264 FGSSITSKDLISVSGYPT 281 (294)
Q Consensus 264 ~~~~it~~~v~~~~~~~~ 281 (294)
....||.+.|..+++...
T Consensus 233 ~~~~It~~~V~~~LG~~d 250 (700)
T PRK12323 233 SAGNVSEEAVRGMLGAID 250 (700)
T ss_pred ccCCcCHHHHHHHhCCCC
Confidence 667799998888887765
No 8
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-33 Score=250.10 Aligned_cols=226 Identities=24% Similarity=0.373 Sum_probs=197.1
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc---------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (294)
..++.++|+|..|++++|++.+++.|..++..++.++ ++|+||+|+|||++|+++|+.+.|...
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 4689999999999999999999999999999988766 699999999999999999999977431
Q ss_pred ---cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
....++.+++.+..+.+.++..+......+. .+++.++||||+|+|+....+.|++.+++.+..+.+
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~----------~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPT----------QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhh----------cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 2235667777766677777777665443321 134679999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++|+.+..++..+++||..+.|.+++.+++..++.+++..+++.++++++..|++.++|++|.+++++..+..+.++.|
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~I 231 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAV 231 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999988777767789
Q ss_pred ChhhhhhhcccccCC
Q 022641 269 TSKDLISVSGYPTGG 283 (294)
Q Consensus 269 t~~~v~~~~~~~~~~ 283 (294)
|.++|..+++.....
T Consensus 232 T~edV~~lLG~~d~e 246 (702)
T PRK14960 232 HHQDVKEMLGLIDRT 246 (702)
T ss_pred CHHHHHHHhccCCHH
Confidence 999999998865443
No 9
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.7e-33 Score=245.70 Aligned_cols=224 Identities=25% Similarity=0.433 Sum_probs=200.1
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc-----------------
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~----------------- 111 (294)
.|..+|+|..|++++||+.+++.|.+++..++.++ ++|+||+|+||||+|+.+|+.+.|...
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 47889999999999999999999999999988875 999999999999999999999876432
Q ss_pred -cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEE
Q 022641 112 -YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (294)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~ 190 (294)
....++++++.+..+.+.++..+......+. .+++.++||||+|.++...++.|++.+++++.++.+|+
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~----------~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPI----------SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccc----------cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 3456788888888888888887766544332 24567999999999999999999999999999999999
Q ss_pred EecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCCh
Q 022641 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270 (294)
Q Consensus 191 ~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~ 270 (294)
+|+....+.+.+.+||..+.|.+++.+++..++.++++++|+.+++++++.|++.++|++|.+++.++.++.+.++.||.
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~ 231 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISE 231 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999888788999
Q ss_pred hhhhhhcccccCC
Q 022641 271 KDLISVSGYPTGG 283 (294)
Q Consensus 271 ~~v~~~~~~~~~~ 283 (294)
++|..+++....+
T Consensus 232 e~V~~llg~~~~~ 244 (491)
T PRK14964 232 KSVRDLLGCVDKH 244 (491)
T ss_pred HHHHHHHccCCHH
Confidence 9999988765443
No 10
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.8e-33 Score=252.49 Aligned_cols=224 Identities=24% Similarity=0.378 Sum_probs=192.8
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
..+|.++|+|..|++++|+++++..|.+++..++.++ ++|+||+|||||++|+.+++.+.|....
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 5789999999999999999999999999999998888 4899999999999999999999885321
Q ss_pred ----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
...++++++.+....+.++..+..+..... .+++.|+||||+|+|+...++.|++.|++++.++++
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~----------~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS----------RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhh----------cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 112344555544566777776655433221 235679999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++|+.+..+.+.+++||..+.|.+++.+++..+|.+++..+++.++++++..|++.++|++|.+++++..+..+..+.+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~I 232 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQV 232 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776666778
Q ss_pred Chhhhhhhccccc
Q 022641 269 TSKDLISVSGYPT 281 (294)
Q Consensus 269 t~~~v~~~~~~~~ 281 (294)
+.+.+..+++...
T Consensus 233 t~~~V~~llG~iD 245 (944)
T PRK14949 233 MLTQVQTMLGSID 245 (944)
T ss_pred cHHHHHHHhCCCC
Confidence 8888888776653
No 11
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1e-32 Score=247.43 Aligned_cols=223 Identities=25% Similarity=0.379 Sum_probs=194.1
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
++++.++|+|..|++++|++.++..|.+.+..++.++ ++|+||+|||||++|+.+++.+.|....
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 5789999999999999999999999999999998888 6899999999999999999999885321
Q ss_pred ----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
...++++++.+....+.++..+..+..... .+++.|+||||+|+|+...++.|++.|++++.++.+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~----------~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~F 152 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA----------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhh----------cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEE
Confidence 124456666655567777776665443322 235679999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++|+.+..+++.+++||..+.|.+++.+++..+|.+++..+++.++++++..|+..++|++|.++++++.+....+..|
T Consensus 153 IL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~i 232 (647)
T PRK07994 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQV 232 (647)
T ss_pred EEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776656679
Q ss_pred Chhhhhhhcccc
Q 022641 269 TSKDLISVSGYP 280 (294)
Q Consensus 269 t~~~v~~~~~~~ 280 (294)
+.+++..+++..
T Consensus 233 t~~~v~~~lg~~ 244 (647)
T PRK07994 233 TTDDVSAMLGTL 244 (647)
T ss_pred CHHHHHHHHccC
Confidence 999998887753
No 12
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.4e-32 Score=243.14 Aligned_cols=223 Identities=25% Similarity=0.399 Sum_probs=194.0
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
.+||.++|+|..|++++|++.++..|..++..++.++ ++|+||+|+|||++|+.+++.+.|....
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 5799999999999999999999999999999988777 7899999999999999999999874221
Q ss_pred ----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
...++++++....+.+.++..+..+...+. .+++.|+||||+|+++...++.|++.+++++..+.+
T Consensus 83 ~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~----------~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 83 NNNSFIDLIEIDAASRTGVEETKEILDNIQYMPS----------QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred hcCCCCceEEeecccccCHHHHHHHHHHHHhhhh----------cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 124455555555566666666655443321 235679999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++|++...+++.+.+||..+.|.+++.+++..++.++++.+|+.++++++..+++.++||+|.++++++.++.+.++.|
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~I 232 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGEL 232 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCC
Confidence 99999999899899999999999999999999999999999999999999999999999999999999999988877889
Q ss_pred Chhhhhhhcccc
Q 022641 269 TSKDLISVSGYP 280 (294)
Q Consensus 269 t~~~v~~~~~~~ 280 (294)
+.++++++++..
T Consensus 233 t~~~V~~~l~~~ 244 (546)
T PRK14957 233 KQAQIKQMLGII 244 (546)
T ss_pred CHHHHHHHHccC
Confidence 999999988764
No 13
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.6e-32 Score=235.99 Aligned_cols=226 Identities=24% Similarity=0.367 Sum_probs=190.0
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
.+++.++|+|..|++++||++.++.+..++..++.++ ++|+||+|+|||++|+.+++.+.|....
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 5689999999999999999999999999999988777 6899999999999999999999764321
Q ss_pred ----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
...++.+++......+.++..+......+ ..+++.++||||+|.++...++.|++.+++++....+
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p----------~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSP----------SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCc----------ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11334444443344555554444332211 1234579999999999999999999999999889999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++|+....+.+++.+||..+.|.|++.+++.+++.++++.+|..+++++++.+++.++||+|.+++.++.++.+....|
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~I 232 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNI 232 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999887777789
Q ss_pred ChhhhhhhcccccCC
Q 022641 269 TSKDLISVSGYPTGG 283 (294)
Q Consensus 269 t~~~v~~~~~~~~~~ 283 (294)
|.++|.++++...++
T Consensus 233 t~~~v~~~l~~~~~~ 247 (363)
T PRK14961 233 NIKNVTDMLGLLNEK 247 (363)
T ss_pred CHHHHHHHHCCCCHH
Confidence 999999988865443
No 14
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.1e-32 Score=240.75 Aligned_cols=229 Identities=27% Similarity=0.384 Sum_probs=199.0
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCC-cEEEECCCCCCHHHHHHHHHHHhcCCCc-------------
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~-~ill~Gp~G~GKT~la~~la~~~~~~~~------------- 111 (294)
....||.++|+|..|++++|++.++..|...+..++.+ .++|+||+|||||++|+.+++.+.|...
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 56789999999999999999999999999988887764 5999999999999999999999987532
Q ss_pred ---------cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 022641 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (294)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~ 182 (294)
....++++++.+..+.+.++..+......+ ..+++.++||||+|.++...++.|++.++++
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P----------~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep 155 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP----------LQGKHKIFIIDEVHMLSKGAFNALLKTLEEP 155 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc----------ccCCcEEEEEEChhhcCHHHHHHHHHHHhhc
Confidence 123566677766677888887776644332 2245679999999999999999999999999
Q ss_pred cCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 022641 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (294)
Q Consensus 183 ~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~ 262 (294)
+..+.+|++|+....+++.+.+||..+.|.+++.+++..++.++++.+|+.++++++..|++.++|++|.+++.++.++.
T Consensus 156 p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 156 PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HhC---CCCChhhhhhhcccccCCC
Q 022641 263 LFG---SSITSKDLISVSGYPTGGS 284 (294)
Q Consensus 263 ~~~---~~it~~~v~~~~~~~~~~~ 284 (294)
+.+ ..||.++|..+++......
T Consensus 236 ~~~~~~~~It~~~V~~llg~~~~~~ 260 (507)
T PRK06645 236 MSAKSDNIISPQVINQMLGLVDSSV 260 (507)
T ss_pred hhccCCCCcCHHHHHHHHCCCCHHH
Confidence 653 3699999999998866553
No 15
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.2e-32 Score=244.16 Aligned_cols=223 Identities=25% Similarity=0.372 Sum_probs=195.3
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc-----------------
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~----------------- 111 (294)
.|.++|+|..|++++||+++++.|..++..++.+| ++|+||+|||||++|+.+++.++|...
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 46799999999999999999999999999999888 699999999999999999999987431
Q ss_pred ---cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
....++++++....+.+.+++........+. .+++.|+||||+|+++...++.|++.|++.+.++.+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~----------~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~f 151 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPA----------QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIF 151 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhh----------cCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEE
Confidence 1235666777666677777776555433321 235679999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh-CCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSS 267 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~-~~~ 267 (294)
|++|+.+..+.+.+.+||..+.|.+++.+++..++.++++.+|+.++++++..+++.++|++|.++++|+.++.+. +..
T Consensus 152 IL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~ 231 (584)
T PRK14952 152 IFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTH 231 (584)
T ss_pred EEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988776 567
Q ss_pred CChhhhhhhcccccC
Q 022641 268 ITSKDLISVSGYPTG 282 (294)
Q Consensus 268 it~~~v~~~~~~~~~ 282 (294)
||.+++..+++....
T Consensus 232 It~~~v~~llg~~~~ 246 (584)
T PRK14952 232 VTYQRALGLLGATDV 246 (584)
T ss_pred cCHHHHHHHHCCCCH
Confidence 999999999887543
No 16
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.5e-32 Score=246.02 Aligned_cols=226 Identities=24% Similarity=0.383 Sum_probs=197.7
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc---------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (294)
++.|.+||+|..|++++|++.++..|.+++..++.++ ++|+||+|+|||++|+.+++.++|...
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 5689999999999999999999999999999998877 599999999999999999999987431
Q ss_pred --------cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc
Q 022641 112 --------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183 (294)
Q Consensus 112 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~ 183 (294)
....++++++....+.+.+++.+........ .+++.|+||||+|+|+...++.|++.+++.+
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~----------~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP 152 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPV----------QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP 152 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcc----------cCCceEEEEEChhhCCHHHHHHHHHhcccCC
Confidence 1224666777666777778777765433221 2356799999999999999999999999999
Q ss_pred CcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 022641 184 KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (294)
Q Consensus 184 ~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 263 (294)
.++.+|++|+++..++..+++||..+.|.+++.+++..++++++..+|+.++++++..|++.++|++|.++++++.+..+
T Consensus 153 ~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~ 232 (618)
T PRK14951 153 EYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAF 232 (618)
T ss_pred CCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred hCCCCChhhhhhhcccccCC
Q 022641 264 FGSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 264 ~~~~it~~~v~~~~~~~~~~ 283 (294)
..+.||.++|.++++....+
T Consensus 233 ~~~~It~~~V~~~Lg~~~~~ 252 (618)
T PRK14951 233 GSGQLQEAAVRQMLGSVDRS 252 (618)
T ss_pred cCCCcCHHHHHHHHcCCCHH
Confidence 77789999999998875443
No 17
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3e-32 Score=239.85 Aligned_cols=225 Identities=29% Similarity=0.443 Sum_probs=196.7
Q ss_pred chhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc----------------
Q 022641 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL---------------- 111 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~---------------- 111 (294)
++|.++|+|..|++++|++.++..|..++..++.++ ++|+||+|+|||++|+.+++.+.|...
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 478999999999999999999999999999998887 589999999999999999999987543
Q ss_pred --cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEE
Q 022641 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (294)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii 189 (294)
.+..++.+++.+..+.+.++..+......+ ..+++.|+||||+|.++...++.|++.+++++..+.+|
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P----------~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKP----------SMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCc----------ccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 233566666666567777777765533221 12356799999999999999999999999999999999
Q ss_pred EEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC
Q 022641 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (294)
Q Consensus 190 ~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it 269 (294)
++|+.+..+.+++.+||..+.|.|++.+++..++.+++..+|+.++++++..+++.++||+|.+++.++.+..+....||
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It 231 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAIT 231 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777899
Q ss_pred hhhhhhhcccccCC
Q 022641 270 SKDLISVSGYPTGG 283 (294)
Q Consensus 270 ~~~v~~~~~~~~~~ 283 (294)
.++|..+++...+.
T Consensus 232 ~~~V~~~lg~~~~~ 245 (535)
T PRK08451 232 ESKVADMLGLLDPS 245 (535)
T ss_pred HHHHHHHhCCCCHH
Confidence 99999988765443
No 18
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.3e-32 Score=244.09 Aligned_cols=226 Identities=26% Similarity=0.416 Sum_probs=196.2
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
+++|.+||+|..|++++|++++++.|..++..++.++ ++|+||+|||||++|+.+++.+.|....
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 5689999999999999999999999999999988776 7999999999999999999999875321
Q ss_pred ----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
...+++++.....+.+.++..+........ .+++.|+||||+|.++...++.|++.|++.+..+.+
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~----------~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPT----------AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhh----------hCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 123456666666777777777665433221 134579999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++|+++..++..+++||..+.|.+++.+++..+|.+++..+|+.++++++..|++.++||+|.++++|+.+..+....|
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~I 232 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKV 232 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887766679
Q ss_pred ChhhhhhhcccccCC
Q 022641 269 TSKDLISVSGYPTGG 283 (294)
Q Consensus 269 t~~~v~~~~~~~~~~ 283 (294)
+.++|..+++....+
T Consensus 233 t~e~V~~lLG~~d~~ 247 (709)
T PRK08691 233 AENDVRQMIGAVDKQ 247 (709)
T ss_pred CHHHHHHHHcccCHH
Confidence 999999998876543
No 19
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.4e-32 Score=241.16 Aligned_cols=226 Identities=30% Similarity=0.449 Sum_probs=193.6
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc-----------------
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~----------------- 111 (294)
.|.++|+|..|++++|+++++..|..++..+..++ ++|+|||||||||+|+++++.+.|...
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 58899999999999999999999999999988876 899999999999999999999976432
Q ss_pred -cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEE
Q 022641 112 -YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (294)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~ 190 (294)
....++.+++....+.+.++.........+ ..+++.+|||||+|.++...++.|+..++..+..+.+|+
T Consensus 83 g~~~dv~el~aa~~~gid~iR~i~~~~~~~p----------~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 83 GTFMDVIELDAASNRGIDEIRKIRDAVGYRP----------MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred CCCCccEEEeCcccCCHHHHHHHHHHHhhCh----------hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 122567777776667777765443332211 123467999999999999999999999999888888888
Q ss_pred EecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCCh
Q 022641 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270 (294)
Q Consensus 191 ~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~ 270 (294)
+|+.+..+.+++.+||..+.|.|++.+++..+++++++.+++.++++++..|++.++||+|.+++.|+.++.+.+..||.
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~ 232 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITL 232 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999988776667999
Q ss_pred hhhhhhcccccCCCC
Q 022641 271 KDLISVSGYPTGGSG 285 (294)
Q Consensus 271 ~~v~~~~~~~~~~~~ 285 (294)
+++..+++...++..
T Consensus 233 e~V~~~l~~~~~~~i 247 (472)
T PRK14962 233 ETVHEALGLIPIEVV 247 (472)
T ss_pred HHHHHHHcCCCHHHH
Confidence 999999987765433
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-32 Score=225.10 Aligned_cols=214 Identities=30% Similarity=0.378 Sum_probs=182.5
Q ss_pred chhhhhcCCCcchhhcccHHHH---HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
.|+..+++|.++++++||++++ ..|.+++..+..++++|||||||||||+|+.++... +..|..+++...
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~------~~~f~~~sAv~~- 84 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT------NAAFEALSAVTS- 84 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh------CCceEEeccccc-
Confidence 4999999999999999999999 688999999999999999999999999999999998 888888887764
Q ss_pred chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEe--cCCcccchHhh
Q 022641 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLA 203 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~--~~~~~~~~~l~ 203 (294)
++..++..+......... +++-||||||+|++++.+|+.|+..+++ ..+.+|.+| |+.+.+.++++
T Consensus 85 gvkdlr~i~e~a~~~~~~----------gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 85 GVKDLREIIEEARKNRLL----------GRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPSFELNPALL 152 (436)
T ss_pred cHHHHHHHHHHHHHHHhc----------CCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCCCeeecHHHh
Confidence 677788777776444321 3346999999999999999999999987 444455554 67788999999
Q ss_pred ccccEEEecCCCHHHHHHHHHHHHHH--hCCC-----CCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC--CCChhhhh
Q 022641 204 SRCAKFRFKPLSEEVMSSRVLHICNE--EGLN-----LDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLI 274 (294)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~~--~~~~-----~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~--~it~~~v~ 274 (294)
+||.++.|.|++.+++..++.+.+.. .++. +++++++.++..++||.|.++|.|+.+....+. .++.+.+.
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~ 232 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLE 232 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 99999999999999999999995543 3444 789999999999999999999999999988733 45688888
Q ss_pred hhccccc
Q 022641 275 SVSGYPT 281 (294)
Q Consensus 275 ~~~~~~~ 281 (294)
++++...
T Consensus 233 ~~l~~~~ 239 (436)
T COG2256 233 EILQRRS 239 (436)
T ss_pred HHHhhhh
Confidence 8888744
No 21
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.4e-32 Score=238.33 Aligned_cols=225 Identities=26% Similarity=0.451 Sum_probs=193.7
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
..+|.++|+|..|++++|++..+..|.+++..++.++ ++|+||+|+|||++|+.+++.+.|....
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999998887776 8899999999999999999999875432
Q ss_pred ----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
...++.+++....+.+.++..+......+. .+++.++||||+|.++...++.|++.+++++....+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~----------~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvf 152 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPT----------TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVF 152 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchh----------hCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEE
Confidence 124455665555667777776655443322 134679999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++|+.+..+.+.+++||..+.|.+++.+++..++..++..+|+.+++++++.+++.++|++|.+++.++.++.+.+..|
T Consensus 153 IL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~I 232 (605)
T PRK05896 153 IFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEI 232 (605)
T ss_pred EEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888876669
Q ss_pred ChhhhhhhcccccC
Q 022641 269 TSKDLISVSGYPTG 282 (294)
Q Consensus 269 t~~~v~~~~~~~~~ 282 (294)
+.+++..+++....
T Consensus 233 t~e~V~ellg~~~~ 246 (605)
T PRK05896 233 DIEDINKTFGLVDN 246 (605)
T ss_pred CHHHHHHHhccCCH
Confidence 99999887765443
No 22
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.3e-31 Score=247.53 Aligned_cols=224 Identities=26% Similarity=0.389 Sum_probs=193.8
Q ss_pred chhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc----------------
Q 022641 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL---------------- 111 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~---------------- 111 (294)
..|.+||+|..|++++||+.+++.|..++..++.+| +||+||+|||||++|+.|++.++|...
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 457899999999999999999999999999998888 799999999999999999999987532
Q ss_pred ----cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcce
Q 022641 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (294)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ 187 (294)
....+++++..+..+++.++++........ ...+++|+||||+|+|+...++.|+++|++.+.+++
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p----------~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~ 152 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAP----------AESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLK 152 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhch----------hcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeE
Confidence 123456666656566777776554433221 124567999999999999999999999999999999
Q ss_pred EEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh-CC
Q 022641 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GS 266 (294)
Q Consensus 188 ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~-~~ 266 (294)
||++|+....+.+.|++||..+.|.+++.+++..+|.++++.+++.++++++..++..++||+|.++++|+.+..+. .+
T Consensus 153 fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~ 232 (824)
T PRK07764 153 FIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPE 232 (824)
T ss_pred EEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999988764 46
Q ss_pred CCChhhhhhhcccccC
Q 022641 267 SITSKDLISVSGYPTG 282 (294)
Q Consensus 267 ~it~~~v~~~~~~~~~ 282 (294)
.||.+++..+++....
T Consensus 233 ~IT~e~V~allg~~~~ 248 (824)
T PRK07764 233 GVTYERAVALLGVTDS 248 (824)
T ss_pred CCCHHHHHHHhcCCCH
Confidence 7999999988876543
No 23
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.2e-31 Score=237.94 Aligned_cols=226 Identities=28% Similarity=0.447 Sum_probs=197.8
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc---------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--------------- 111 (294)
.+.|.++|+|..|++++|+++++..|.+++..++.++ ++|+||+|||||++|+.+++.+.|...
T Consensus 3 y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred cHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 4678899999999999999999999999999988777 788999999999999999999987542
Q ss_pred ---cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
....++++++....+.+.++.........+ ..+++.++||||+|.|+...++.|++.+++++.++.+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p----------~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~if 152 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAP----------SEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIF 152 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCc----------ccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEE
Confidence 234566777766667777776665544322 1345679999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++|+.+..+++.+.+||..+.|.+++..++..++..+++++|+.+++++++.++..++|++|.+++.|+.+..+.+..|
T Consensus 153 Ilatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~I 232 (559)
T PRK05563 153 ILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKV 232 (559)
T ss_pred EEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887777789
Q ss_pred ChhhhhhhcccccCC
Q 022641 269 TSKDLISVSGYPTGG 283 (294)
Q Consensus 269 t~~~v~~~~~~~~~~ 283 (294)
|.++|..+++.....
T Consensus 233 t~~~V~~vlg~~~~~ 247 (559)
T PRK05563 233 TYEDALEVTGSVSQE 247 (559)
T ss_pred CHHHHHHHhCCCCHH
Confidence 999999988876554
No 24
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.9e-31 Score=240.55 Aligned_cols=226 Identities=26% Similarity=0.457 Sum_probs=197.6
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
++-+.++|+|..|++++|+++++..|.+++..++.++ ++|+||+|+|||++|+.+++.+.|....
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 4568899999999999999999999999999988877 6999999999999999999999876432
Q ss_pred ----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
...++++++....+.+.++.........+ ..+++.++||||+|+++...++.|++.|++++.++.+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p----------~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~f 152 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLP----------SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKF 152 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhcc----------ccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEE
Confidence 23456666666667777777665543322 1245679999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++|+.+..+++.+++||..+.|.+++.+++..++..+++++|+.++++++..+++.++||+|.+++.++.+..+.++.|
T Consensus 153 Il~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~I 232 (576)
T PRK14965 153 IFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAV 232 (576)
T ss_pred EEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887789
Q ss_pred ChhhhhhhcccccCC
Q 022641 269 TSKDLISVSGYPTGG 283 (294)
Q Consensus 269 t~~~v~~~~~~~~~~ 283 (294)
|.+++..+++.....
T Consensus 233 t~edV~~llG~~~~~ 247 (576)
T PRK14965 233 GDDDVAELLGVVDRR 247 (576)
T ss_pred CHHHHHHHhCCCCHH
Confidence 999999987765443
No 25
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.8e-31 Score=237.96 Aligned_cols=224 Identities=28% Similarity=0.424 Sum_probs=193.9
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
.+++.++|+|..|++++|++++++.|..++..++.++ ++|+||+|+|||++|+.+++.+.|....
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 5689999999999999999999999999999988887 6899999999999999999999875321
Q ss_pred ----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
...++++++......+.++..+......+ ..+++.|+||||+|.++...++.|++.+++++..+.+
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p----------~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAP----------TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCc----------ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 11345555555556677776665543222 1245679999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++|+++..+++.+++||..+.|.+++.+++..++.++++.+|+.++++++..+++.++|++|.++++++.+..+..+.|
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I 232 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTV 232 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999988888899999999999999999999999999999999999999999999999999999999999888877789
Q ss_pred Chhhhhhhccccc
Q 022641 269 TSKDLISVSGYPT 281 (294)
Q Consensus 269 t~~~v~~~~~~~~ 281 (294)
+.+++..+++...
T Consensus 233 ~~~~v~~~~~~~~ 245 (527)
T PRK14969 233 NESEVRAMLGAID 245 (527)
T ss_pred CHHHHHHHHCCCC
Confidence 9999999887653
No 26
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.2e-31 Score=237.97 Aligned_cols=227 Identities=28% Similarity=0.457 Sum_probs=197.6
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc------------
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------ 112 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~------------ 112 (294)
...++|.++|+|..|++++|++.+++.|.+++..++.++ ++|+||+|+|||++|+.+++.+.|....
T Consensus 9 ~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 9 TPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred ccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 456789999999999999999999999999999998876 9999999999999999999999875321
Q ss_pred -----------CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh
Q 022641 113 -----------KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181 (294)
Q Consensus 113 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~ 181 (294)
+..++++++....+.+.+++.+......+. .+++.|+||||+|.++....+.|++.|++
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~----------~a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPV----------SARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchh----------cCCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 123455665666677788777665543322 24567999999999999999999999999
Q ss_pred hcCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHH
Q 022641 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (294)
Q Consensus 182 ~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~ 261 (294)
++..+.+|++++....+.+.+.+||..+.|.+++.+++..++.++++++++.++++++..|++.++|++|.+++.++.++
T Consensus 159 Pp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli 238 (598)
T PRK09111 159 PPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAI 238 (598)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999988888899999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHhCCCCChhhhhhhcccccC
Q 022641 262 RLFGSSITSKDLISVSGYPTG 282 (294)
Q Consensus 262 ~~~~~~it~~~v~~~~~~~~~ 282 (294)
.+..+.||.++|..+++....
T Consensus 239 ~~g~g~It~e~V~~llg~~~~ 259 (598)
T PRK09111 239 AHGAGEVTAEAVRDMLGLADR 259 (598)
T ss_pred hhcCCCcCHHHHHHHhCCCCH
Confidence 776678999999999886443
No 27
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.3e-31 Score=238.94 Aligned_cols=227 Identities=28% Similarity=0.463 Sum_probs=193.9
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc------------
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------ 112 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~------------ 112 (294)
....+|.++|+|..|++++|++.+++.|..++..++.++ ++|+||+|+|||++|+.+++.+.|....
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 456799999999999999999999999999999988777 6899999999999999999999885421
Q ss_pred ---CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEE
Q 022641 113 ---KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (294)
Q Consensus 113 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii 189 (294)
...++.+++....+.+.++.....+...+. .+++.|+||||+|.++...++.|++.|++++..+.+|
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~----------~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPT----------QSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchh----------cCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 112334444444456667666655443322 2456799999999999999999999999999999999
Q ss_pred EEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC
Q 022641 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (294)
Q Consensus 190 ~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it 269 (294)
++|+.+..+++.+++||..+.|.+++.+++..++..++.++|+.+++++++.++..++|++|.++++++.++.+....|+
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It 232 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKIT 232 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877666699
Q ss_pred hhhhhhhcccccC
Q 022641 270 SKDLISVSGYPTG 282 (294)
Q Consensus 270 ~~~v~~~~~~~~~ 282 (294)
.+++..+++....
T Consensus 233 ~e~V~ellg~~~~ 245 (725)
T PRK07133 233 LKNVEELFGLVSN 245 (725)
T ss_pred HHHHHHHHcCCCH
Confidence 9999888776444
No 28
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.1e-31 Score=235.91 Aligned_cols=227 Identities=27% Similarity=0.405 Sum_probs=191.2
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCC-CcEEEECCCCCCHHHHHHHHHHHhcCCCc--------------
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~-------------- 111 (294)
...||.++|+|..|++++|++.++..|.+++..++. +.++|+||+|||||++|+.+++.+.|...
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 356999999999999999999999999999998874 55889999999999999999999987521
Q ss_pred ----cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcce
Q 022641 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (294)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ 187 (294)
....++++++......+.++.....+..... .+++.||||||+|.++...++.|++.+++.+....
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~----------~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~i 151 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPM----------EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVT 151 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhh----------cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEE
Confidence 1234566666555566666654443332221 23457999999999999999999999999888899
Q ss_pred EEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCC
Q 022641 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (294)
Q Consensus 188 ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~ 267 (294)
+|++|+.+..+...+.+||..+.|.+++.+++..+|..++..+++.++++++..|++.++||+|.++++|+.++...+..
T Consensus 152 fILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~ 231 (624)
T PRK14959 152 FVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESR 231 (624)
T ss_pred EEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999876554667
Q ss_pred CChhhhhhhcccccCC
Q 022641 268 ITSKDLISVSGYPTGG 283 (294)
Q Consensus 268 it~~~v~~~~~~~~~~ 283 (294)
||.++|..+++.....
T Consensus 232 It~d~V~~~lg~~~~e 247 (624)
T PRK14959 232 LTIDGARGVLGLAGQE 247 (624)
T ss_pred cCHHHHHHHhCCCCHH
Confidence 9999998888765433
No 29
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.1e-32 Score=234.63 Aligned_cols=226 Identities=32% Similarity=0.477 Sum_probs=204.2
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc-c-------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-Y------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~-~------------- 112 (294)
.+++..+|+|..|++++|++.+...|...+..++..| .+|+||.|||||++|+.+|+.+.|... .
T Consensus 3 yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 3 YQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred hHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 4578899999999999999999999999999988766 999999999999999999999988641 1
Q ss_pred ----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
...++++++.+..+++.++.........+. .+++.|.||||+|+|+....+.|++.+++++.++.+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~----------~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~F 152 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPS----------EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKF 152 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCc----------cccceEEEEecHHhhhHHHHHHHhcccccCccCeEE
Confidence 235566677777788888887777655543 356789999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++|..+.+++..+++||+.+.|..++.+++...|..++.++++.++++++..+++.++|++|.++.+|+.+..+.++.|
T Consensus 153 IlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~I 232 (515)
T COG2812 153 ILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEI 232 (515)
T ss_pred EEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999878889
Q ss_pred ChhhhhhhcccccCC
Q 022641 269 TSKDLISVSGYPTGG 283 (294)
Q Consensus 269 t~~~v~~~~~~~~~~ 283 (294)
|.+.+..+++.....
T Consensus 233 t~~~v~~~lG~~~~~ 247 (515)
T COG2812 233 TLESVRDMLGLTDIE 247 (515)
T ss_pred cHHHHHHHhCCCCHH
Confidence 999999999987654
No 30
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.2e-31 Score=231.09 Aligned_cols=227 Identities=32% Similarity=0.460 Sum_probs=193.3
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc-------------
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~------------- 112 (294)
+..||.++|+|..|.+++|++.++..|..++..+..++ ++|+||+|+|||++|+.+++.+.|....
T Consensus 2 ~y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred CchHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 35699999999999999999999999999999988777 6789999999999999999999763211
Q ss_pred -----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcce
Q 022641 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (294)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ 187 (294)
...++.+++....+.+.++.........+ ..+++.++||||+|.++...++.|++.+++++....
T Consensus 82 i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P----------~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 82 IDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTP----------IKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred HhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCc----------ccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 12344455555556666665544433222 124567999999999999999999999999988999
Q ss_pred EEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCC
Q 022641 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (294)
Q Consensus 188 ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~ 267 (294)
+|++++....+++++.+||..+.|.|++.+++..++..+++.+|+.+++++++.+++.++||+|.+++.++.++.+.+..
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~ 231 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGK 231 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999888888899999999999999999999999999999999999999999999999999999999999998877778
Q ss_pred CChhhhhhhcccccCC
Q 022641 268 ITSKDLISVSGYPTGG 283 (294)
Q Consensus 268 it~~~v~~~~~~~~~~ 283 (294)
||.++|..+++.....
T Consensus 232 It~~~V~~~lg~~~~~ 247 (486)
T PRK14953 232 VTIKVVEEFLGIVSQE 247 (486)
T ss_pred cCHHHHHHHhCCCCHH
Confidence 9999999988876554
No 31
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-30 Score=231.12 Aligned_cols=222 Identities=30% Similarity=0.409 Sum_probs=190.8
Q ss_pred hhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcE-EEECCCCCCHHHHHHHHHHHhcCCC-----------------cc
Q 022641 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPE-----------------LY 112 (294)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~i-ll~Gp~G~GKT~la~~la~~~~~~~-----------------~~ 112 (294)
+.++|+|..|++++||++++..|..++..+..++. +|+||||||||++|+++++.+.|.. ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 44899999999999999999999999999988875 9999999999999999999997643 12
Q ss_pred CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEe
Q 022641 113 KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (294)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~ 192 (294)
...++.+++.+..+.+.++.........+ ..+++.++||||+|.++...++.|++.+++.+..+.+|+++
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p----------~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t 153 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAP----------LRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILAT 153 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhcc----------ccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 33566777766666666666544333221 12345799999999999999999999999988888899999
Q ss_pred cCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhh
Q 022641 193 NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272 (294)
Q Consensus 193 ~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~ 272 (294)
+.+..+.+.+.+||..+.|.+++.+++..++.++++.+|+.+++++++.|++.++||+|.+++.|+.+..+ +..||.++
T Consensus 154 ~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~-~~~It~~~ 232 (504)
T PRK14963 154 TEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL-GTPVTRKQ 232 (504)
T ss_pred CChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHH
Confidence 98888999999999999999999999999999999999999999999999999999999999999998765 66799999
Q ss_pred hhhhcccccCC
Q 022641 273 LISVSGYPTGG 283 (294)
Q Consensus 273 v~~~~~~~~~~ 283 (294)
|..+++.....
T Consensus 233 V~~~l~~~~~~ 243 (504)
T PRK14963 233 VEEALGLPPQE 243 (504)
T ss_pred HHHHHCCCcHH
Confidence 99998876654
No 32
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.98 E-value=3.5e-30 Score=219.64 Aligned_cols=227 Identities=49% Similarity=0.834 Sum_probs=191.7
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (294)
...||.++|+|..+++++|++.++..+..++..+..++++|+||+|+|||++++.+++++.+... ...++.++.++...
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~~~~ 81 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASDERG 81 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEeccccccc
Confidence 45799999999999999999999999999999888888999999999999999999999866543 34566676666555
Q ss_pred hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccc
Q 022641 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~ 206 (294)
...+...+..+...... ......+|+|||++.++...++.|+..++..+....+|++++....+.+++.+||
T Consensus 82 ~~~~~~~i~~~~~~~~~--------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 82 IDVIRNKIKEFARTAPV--------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred hHHHHHHHHHHHhcCCC--------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 54444444443322111 0123569999999999998889999999988888889999998888889999999
Q ss_pred cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhcccccCC
Q 022641 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~ 283 (294)
..+.|.|++.+++..++..+++.+++.+++++++.+++.++||+|.+++.++.++.. ++.||.++|..++....+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~-~~~it~~~v~~~~~~~~~~ 229 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT-GKEVTEEAVYKITGTARPE 229 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999999999999999999999999988775 6679999999998776544
No 33
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.98 E-value=2.6e-30 Score=223.52 Aligned_cols=224 Identities=29% Similarity=0.472 Sum_probs=189.8
Q ss_pred chhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc---------------
Q 022641 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY--------------- 112 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~--------------- 112 (294)
+||.++|+|..|++++|++..+..|..++..+..++ ++|+||||+|||++|+.+++.+.|....
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 599999999999999999999999999999888776 7899999999999999999999765321
Q ss_pred ---CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEE
Q 022641 113 ---KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (294)
Q Consensus 113 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii 189 (294)
...++.+++......+.++..+......+ ..+++.+++|||++.++...++.|++.+++.+..+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p----------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAP----------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCc----------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 23455555554445555555555433221 12345799999999999999999999999988888889
Q ss_pred EEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC
Q 022641 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (294)
Q Consensus 190 ~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it 269 (294)
++++.+..+.+.+.+||..+.|.|++.+++..++..+++.+|+.+++++++.+++.++||+|.+++.++.++.+.++.||
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it 231 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNIT 231 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCC
Confidence 99988888889999999999999999999999999999999999999999999999999999999999999888777799
Q ss_pred hhhhhhhcccccC
Q 022641 270 SKDLISVSGYPTG 282 (294)
Q Consensus 270 ~~~v~~~~~~~~~ 282 (294)
.++|++++.....
T Consensus 232 ~~~v~~~~~~~~~ 244 (355)
T TIGR02397 232 YEDVNELLGLVDD 244 (355)
T ss_pred HHHHHHHhCCCCH
Confidence 9999888765443
No 34
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=3.4e-30 Score=225.98 Aligned_cols=226 Identities=31% Similarity=0.449 Sum_probs=191.4
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
.+++.++|+|..|++++|++.++..|..++..++.++ ++|+||+|+|||++|+.+++.+.|....
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~ 83 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE 83 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence 5689999999999999999999999999999888766 8999999999999999999999875311
Q ss_pred -----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcce
Q 022641 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (294)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ 187 (294)
...++.+++....+.+.++.......... ..+++.++||||+|.++...++.|++.+++.+..+.
T Consensus 84 i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~----------~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 84 ISSGTSLDVLEIDGASHRGIEDIRQINETVLFTP----------SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred HhcCCCCceEEeeccccCCHHHHHHHHHHHHhhh----------hcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 22455565555555666665443332221 123467999999999999999999999999888999
Q ss_pred EEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCC
Q 022641 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (294)
Q Consensus 188 ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~ 267 (294)
+|++++....+.+.+.+||..+.|.+++.+++..++..+++.+|+.+++++++.|+..++||+|.+++.++.++.+.+..
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~ 233 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKS 233 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999988776667
Q ss_pred CChhhhhhhcccccCC
Q 022641 268 ITSKDLISVSGYPTGG 283 (294)
Q Consensus 268 it~~~v~~~~~~~~~~ 283 (294)
|+.++|..+++....+
T Consensus 234 It~~~V~~l~~~~~~~ 249 (451)
T PRK06305 234 LDPDSVAKALGLLSQD 249 (451)
T ss_pred cCHHHHHHHHCCCCHH
Confidence 9999998887764433
No 35
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=7e-30 Score=229.58 Aligned_cols=226 Identities=26% Similarity=0.429 Sum_probs=192.1
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
.+...++|+|..|++++||+.++..|.+++..++.++ ++|+||+|||||++|+.+++.+.|....
T Consensus 3 ~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 3 YQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred cHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 4567899999999999999999999999999988877 8999999999999999999999885321
Q ss_pred ------------CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH
Q 022641 113 ------------KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (294)
Q Consensus 113 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~ 180 (294)
+..+..+++....+.+.++.....+...+ ..+++.++||||+|.++...++.|++.++
T Consensus 83 ~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P----------~~~~~KVvIIdEad~Lt~~a~naLLK~LE 152 (620)
T PRK14954 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGP----------QKGRYRVYIIDEVHMLSTAAFNAFLKTLE 152 (620)
T ss_pred cCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhh----------hcCCCEEEEEeChhhcCHHHHHHHHHHHh
Confidence 12344454444455667766655543222 12356799999999999999999999999
Q ss_pred hhcCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHH
Q 022641 181 TYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (294)
Q Consensus 181 ~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~ 260 (294)
+++....+|++++....+.+.+.+||..+.|.+++.+++..++.++++.+|+.+++++++.+++.++||+|.+++.++.+
T Consensus 153 ePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL 232 (620)
T PRK14954 153 EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQV 232 (620)
T ss_pred CCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHh-----CCCCChhhhhhhcccccCC
Q 022641 261 ARLF-----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 261 ~~~~-----~~~it~~~v~~~~~~~~~~ 283 (294)
+.+. ++.||.++|.+++....++
T Consensus 233 ~~y~~~~~~~~~It~~~V~~lv~~~~e~ 260 (620)
T PRK14954 233 IAFSVGSEAEKVIAYQGVAELLNYIDDE 260 (620)
T ss_pred HHhccccccCCccCHHHHHHHHcCCCHH
Confidence 8886 5679999998888665443
No 36
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.97 E-value=7.2e-30 Score=228.33 Aligned_cols=226 Identities=26% Similarity=0.388 Sum_probs=192.4
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
...+..+|+|..|++++||+.++..|..++..++.++ ++|+||+|+|||++|+++++.+.|....
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 4568899999999999999999999999999988877 8999999999999999999999875211
Q ss_pred ----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceE
Q 022641 113 ----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~i 188 (294)
...++.+++....+.+.++.........+ ..+++.++||||+|.++...++.|++.+++++..+.+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p----------~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vf 152 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPP----------ASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVF 152 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhch----------hcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEE
Confidence 22445555544455566665544433322 1245679999999999999999999999999999999
Q ss_pred EEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 022641 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~i 268 (294)
|++++.+..+.+++.+||..+.|.+++.+++..++..++..+++.++++++..|++.++||+|.++++++.++.+.+..|
T Consensus 153 I~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~I 232 (563)
T PRK06647 153 IFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDI 232 (563)
T ss_pred EEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCC
Confidence 99998888899999999999999999999999999999999999999999999999999999999999998888777789
Q ss_pred ChhhhhhhcccccCC
Q 022641 269 TSKDLISVSGYPTGG 283 (294)
Q Consensus 269 t~~~v~~~~~~~~~~ 283 (294)
|.+++..+++.....
T Consensus 233 t~e~V~~llg~~~~~ 247 (563)
T PRK06647 233 TLEQIRSKMGLTGDE 247 (563)
T ss_pred CHHHHHHHhCCCCHH
Confidence 999999988765443
No 37
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.97 E-value=2.3e-30 Score=200.67 Aligned_cols=196 Identities=24% Similarity=0.314 Sum_probs=144.3
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHc-----CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
....|+.+.++|..+++++||++++..+.-++.. ...++++|+||||+||||||..+|+++ +..+..++
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~------~~~~~~~s 82 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL------GVNFKITS 82 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC------T--EEEEE
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc------CCCeEecc
Confidence 3455888999999999999999999887666542 345689999999999999999999999 77777787
Q ss_pred CCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------------
Q 022641 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------------- 183 (294)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~----------------- 183 (294)
++.......+...+..+. ++.||||||+|++++.+++.|+..||++.
T Consensus 83 g~~i~k~~dl~~il~~l~----------------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 83 GPAIEKAGDLAAILTNLK----------------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp CCC--SCHHHHHHHHT------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred chhhhhHHHHHHHHHhcC----------------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 765444444544443321 24599999999999999999999999643
Q ss_pred -CcceEEEEecCCcccchHhhccccE-EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHH
Q 022641 184 -KVTRFFFICNYISRIIEPLASRCAK-FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (294)
Q Consensus 184 -~~~~ii~~~~~~~~~~~~l~~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~ 261 (294)
.++.+|.+|+....+..++++||.+ ..+..++.+++..++.+.+...++.++++...+|+..|.|.||-+.++|+.+.
T Consensus 147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 2355777788888889999999996 58999999999999999998899999999999999999999999999999775
Q ss_pred HH
Q 022641 262 RL 263 (294)
Q Consensus 262 ~~ 263 (294)
.+
T Consensus 227 D~ 228 (233)
T PF05496_consen 227 DF 228 (233)
T ss_dssp CC
T ss_pred HH
Confidence 44
No 38
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=9.1e-30 Score=221.27 Aligned_cols=225 Identities=27% Similarity=0.440 Sum_probs=189.2
Q ss_pred chhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc---------------
Q 022641 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY--------------- 112 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~--------------- 112 (294)
..+.++|+|..|++++||+.++..|..++..++.++ ++|+||+|+|||++|+++++.+.|....
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 467899999999999999999999999999998887 8999999999999999999999885311
Q ss_pred -----------CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh
Q 022641 113 -----------KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181 (294)
Q Consensus 113 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~ 181 (294)
+..++.+++....+.+.++.....+...+ ..+++.++||||+|.++...++.|++.+++
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p----------~~~~~kvvIIdea~~l~~~~~~~LLk~LEe 153 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGP----------QKGRYRVYIIDEVHMLSIAAFNAFLKTLEE 153 (397)
T ss_pred CHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhch----------hcCCeEEEEEeChhhCCHHHHHHHHHHHhc
Confidence 11334444444445666665544443222 123567999999999999999999999999
Q ss_pred hcCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHH
Q 022641 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (294)
Q Consensus 182 ~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~ 261 (294)
++....+|++++....+.+.+.+||..+.|.|++.+++..++...++.++..+++++++.+++.++||+|.+++.++.+.
T Consensus 154 p~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~ 233 (397)
T PRK14955 154 PPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVI 233 (397)
T ss_pred CCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88888899999888888899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHh-----CCCCChhhhhhhcccccCC
Q 022641 262 RLF-----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 262 ~~~-----~~~it~~~v~~~~~~~~~~ 283 (294)
.+. ++.||.++|..+++...+.
T Consensus 234 ~~~~~~~~~~~It~~~v~~~v~~~~~~ 260 (397)
T PRK14955 234 AFSVESEGEGSIRYDKVAELLNYIDDE 260 (397)
T ss_pred HhccccCCCCccCHHHHHHHHCCCCHH
Confidence 774 3479999998887665443
No 39
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=1.6e-29 Score=228.62 Aligned_cols=223 Identities=26% Similarity=0.424 Sum_probs=193.6
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc--------------
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~-------------- 111 (294)
....|.++|+|..|++++|+++++..|..++..++.++ ++|+||+|+|||++|+.+++.+.|...
T Consensus 3 ~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~ 82 (614)
T PRK14971 3 NYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCV 82 (614)
T ss_pred hhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHH
Confidence 35689999999999999999999999999999998888 899999999999999999999976432
Q ss_pred -----cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcc
Q 022641 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (294)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~ 186 (294)
....++.+++.+..+.+.++..+......+. .+++.++||||+|.++...++.|++.|++++...
T Consensus 83 ~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~----------~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 83 AFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQ----------IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcc----------cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 1345566666655566777766655433322 2356799999999999999999999999999999
Q ss_pred eEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 022641 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (294)
Q Consensus 187 ~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~ 266 (294)
.+|++++....+.+.+++||..+.|.+++.+++..++.+++..+|+.+++++++.|++.++||+|.+++.++.++.+.+.
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~ 232 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGG 232 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999998888766
Q ss_pred CCChhhhhhhccc
Q 022641 267 SITSKDLISVSGY 279 (294)
Q Consensus 267 ~it~~~v~~~~~~ 279 (294)
.|+.+++.+.+..
T Consensus 233 ~It~~~V~~~l~~ 245 (614)
T PRK14971 233 NITYKSVIENLNI 245 (614)
T ss_pred CccHHHHHHHhCC
Confidence 6999888777654
No 40
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.97 E-value=4.7e-29 Score=214.26 Aligned_cols=224 Identities=34% Similarity=0.542 Sum_probs=178.3
Q ss_pred chhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcch-
Q 022641 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI- 127 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~- 127 (294)
.+|.++|+|..+++++|++..+..|..++..+..++++|+||||||||++|+++++.+.+... ...++.+++.+....
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-ENNFTEFNVADFFDQG 81 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-ccceEEechhhhhhcc
Confidence 489999999999999999999999999999988788999999999999999999999865431 223455554432100
Q ss_pred -hH--------------------HHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcc
Q 022641 128 -NV--------------------VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (294)
Q Consensus 128 -~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~ 186 (294)
.. ....+.......... ........+|||||++.++...++.|+.+++..+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~ 156 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASY-----RPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTC 156 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhc-----CCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCC
Confidence 00 001111111000000 0011335699999999999988999999999888778
Q ss_pred eEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 022641 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (294)
Q Consensus 187 ~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~ 266 (294)
.+|++++.+..+.+.+.+||..+.|.|++.+++..++.+++..+++.+++++++.+++.++||+|.+++.++.++. ..+
T Consensus 157 ~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~-~~~ 235 (337)
T PRK12402 157 RFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAAL-AAG 235 (337)
T ss_pred eEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH-cCC
Confidence 8999988877888899999999999999999999999999999999999999999999999999999999998773 345
Q ss_pred CCChhhhhhhccc
Q 022641 267 SITSKDLISVSGY 279 (294)
Q Consensus 267 ~it~~~v~~~~~~ 279 (294)
.||.+++.+++..
T Consensus 236 ~It~~~v~~~~~~ 248 (337)
T PRK12402 236 EITMEAAYEALGD 248 (337)
T ss_pred CCCHHHHHHHhCC
Confidence 7999999998886
No 41
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=4.9e-29 Score=215.81 Aligned_cols=226 Identities=26% Similarity=0.433 Sum_probs=190.0
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCC-cEEEECCCCCCHHHHHHHHHHHhcCCCc------cCCcceee
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPEL------YKSRVLEL 119 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~-~ill~Gp~G~GKT~la~~la~~~~~~~~------~~~~~~~~ 119 (294)
.+.+|.++|+|..|++++|++..++.+.+++..+..+ +++|+||||+|||++++++++.+.|... ....++++
T Consensus 3 ~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l 82 (367)
T PRK14970 3 NFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL 82 (367)
T ss_pred chHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe
Confidence 4578999999999999999999999999999988765 5999999999999999999999876421 22334445
Q ss_pred cCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccc
Q 022641 120 NASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199 (294)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~ 199 (294)
+.........++..+......+ ..+++.+|+|||++.++...++.|++.+++++....+|++++....+.
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~p----------~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIPP----------QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhcc----------ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 5444444556655555432221 123467999999999999889999999998878888889998888999
Q ss_pred hHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhccc
Q 022641 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279 (294)
Q Consensus 200 ~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~ 279 (294)
+++.+||..+.|.+++.+++..++...+.++|+.+++++++.+++.++||+|.+++.++.++.+.+..||.+++..++..
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~ 232 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNI 232 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999887666999999988876
Q ss_pred ccC
Q 022641 280 PTG 282 (294)
Q Consensus 280 ~~~ 282 (294)
..+
T Consensus 233 ~~~ 235 (367)
T PRK14970 233 LDY 235 (367)
T ss_pred CCH
Confidence 543
No 42
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=4.1e-29 Score=225.86 Aligned_cols=224 Identities=29% Similarity=0.457 Sum_probs=190.2
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCC-CcEEEECCCCCCHHHHHHHHHHHhcCCCcc-------------
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~------------- 112 (294)
...||.++|+|..|.+++|++.++..|..++..++. +.++|+||+|+|||++|+++++.+.|....
T Consensus 2 ~~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred CcchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 356999999999999999999999999999998865 569999999999999999999999875321
Q ss_pred -------CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCc
Q 022641 113 -------KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185 (294)
Q Consensus 113 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~ 185 (294)
+..+++++.......+.+++.+........ .+++.|+||||+|.|+...++.|++.+++.+..
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~----------~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~ 151 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV----------QARWKVYVIDECHMLSTAAFNALLKTLEEPPPR 151 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh----------cCCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence 123445555555566777776655433221 234579999999999999999999999999899
Q ss_pred ceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhC
Q 022641 186 TRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265 (294)
Q Consensus 186 ~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~ 265 (294)
+.+|++++++..+.+.+++||..+.|.+++.+++..++..++.++++.++++++..+++.++|++|.++++++..+.+.
T Consensus 152 tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~- 230 (620)
T PRK14948 152 VVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLP- 230 (620)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc-
Confidence 9999999988889999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred CCCChhhhhhhccccc
Q 022641 266 SSITSKDLISVSGYPT 281 (294)
Q Consensus 266 ~~it~~~v~~~~~~~~ 281 (294)
..||.+++..+++...
T Consensus 231 ~~It~e~V~~lvg~~~ 246 (620)
T PRK14948 231 GPITPEAVWDLLGAVP 246 (620)
T ss_pred CCCCHHHHHHHhcCCC
Confidence 4699988887776543
No 43
>PRK04195 replication factor C large subunit; Provisional
Probab=99.97 E-value=3.6e-29 Score=222.93 Aligned_cols=214 Identities=33% Similarity=0.451 Sum_probs=177.6
Q ss_pred chhhhhcCCCcchhhcccHHHHHHHHHHHHcCC----CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN----CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~----~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
.+|+++|+|..+++++|++..+..|..|+.... .++++|+||||||||++|+++++++ +..++++++++.
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el------~~~~ielnasd~ 75 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY------GWEVIELNASDQ 75 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEEccccc
Confidence 489999999999999999999999999986432 4569999999999999999999998 788999999887
Q ss_pred cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH----HHHHHHHHHHHhhcCcceEEEEecCCcccch
Q 022641 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----DAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~----~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~ 200 (294)
.....+...+........-. ..++.+|||||+|.++. ...+.|+..++. ....+|+++|.+..+..
T Consensus 76 r~~~~i~~~i~~~~~~~sl~--------~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 76 RTADVIERVAGEAATSGSLF--------GARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSL 145 (482)
T ss_pred ccHHHHHHHHHHhhccCccc--------CCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccch
Confidence 77666665555433221100 02467999999999975 557788888875 44568889998877766
Q ss_pred -HhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhccc
Q 022641 201 -PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGY 279 (294)
Q Consensus 201 -~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~ 279 (294)
.+.++|..+.|++|+..++..++..++..+++.+++++++.|++.++||+|.+++.|+.++. ....|+.+++..+...
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~-~~~~it~~~v~~~~~~ 224 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE-GYGKLTLEDVKTLGRR 224 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCCcHHHHHHhhcC
Confidence 88999999999999999999999999999999999999999999999999999999998443 2456999999877643
No 44
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.97 E-value=8.1e-29 Score=224.60 Aligned_cols=225 Identities=28% Similarity=0.428 Sum_probs=190.4
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--------------
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------- 112 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------- 112 (294)
++-|.++|+|..|++++|+++++..|..++..++.++ ++|+||+|+|||++|+.+++.+.|....
T Consensus 3 ~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 3 VQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred cHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 4568899999999999999999999999999887766 6999999999999999999999764321
Q ss_pred -----CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcce
Q 022641 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (294)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ 187 (294)
+..++.++.......+.++..+..+.... ..+++.|+||||+|.++...++.|++.+++.+....
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p----------~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv 152 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP----------ALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAI 152 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc----------ccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeE
Confidence 12344555545556666666554432221 124567999999999999999999999999888889
Q ss_pred EEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCC
Q 022641 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (294)
Q Consensus 188 ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~ 267 (294)
+|++++....+.+.+.+||..+.|.+++..++..++..++..+|+.++++++..|++.++||+|.+++.++.++.+.+..
T Consensus 153 ~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~ 232 (585)
T PRK14950 153 FILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGE 232 (585)
T ss_pred EEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999888888899999999999999999999999999999999999999999999999999999999999988877778
Q ss_pred CChhhhhhhcccccC
Q 022641 268 ITSKDLISVSGYPTG 282 (294)
Q Consensus 268 it~~~v~~~~~~~~~ 282 (294)
||.+++..+++...+
T Consensus 233 It~e~V~~ll~~s~~ 247 (585)
T PRK14950 233 ISLSQVQSLLGISGD 247 (585)
T ss_pred CCHHHHHHHhcCCCH
Confidence 999999988876543
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.96 E-value=9.3e-28 Score=210.09 Aligned_cols=211 Identities=31% Similarity=0.404 Sum_probs=173.7
Q ss_pred hhhhhcCCCcchhhcccHHHHHH---HHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRV---LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~---l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (294)
||.++|+|..+++++|+++.+.. +..++..+..++++|+||||||||++|+.+++.. +..++.+++... +
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~------~~~~~~l~a~~~-~ 73 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT------DAPFEALSAVTS-G 73 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEecccc-c
Confidence 79999999999999999999766 9999998888899999999999999999999988 667777776643 4
Q ss_pred hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEe--cCCcccchHhhc
Q 022641 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLAS 204 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~--~~~~~~~~~l~~ 204 (294)
...++..+........ .+++.+|+|||+|.++...++.|+..++. ....+|.++ |....+.+++.+
T Consensus 74 ~~~ir~ii~~~~~~~~----------~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 74 VKDLREVIEEARQRRS----------AGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HHHHHHHHHHHHHhhh----------cCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhccHHHhc
Confidence 4445555444332211 12456999999999999999999999986 334444444 334578899999
Q ss_pred cccEEEecCCCHHHHHHHHHHHHHHh--CC-CCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhcccc
Q 022641 205 RCAKFRFKPLSEEVMSSRVLHICNEE--GL-NLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYP 280 (294)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~ 280 (294)
||..+.|.|++.+++..++.+.+... ++ .+++++++.+++.++||+|.++++++.++.. +..|+.+++..+++..
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~-~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG-VDSITLELLEEALQKR 219 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCCCHHHHHHHHhhh
Confidence 99999999999999999999988653 44 7999999999999999999999999998876 6779999999988763
No 46
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.96 E-value=1.1e-26 Score=197.56 Aligned_cols=214 Identities=33% Similarity=0.459 Sum_probs=171.3
Q ss_pred ccCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEE-ECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF-YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill-~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
.....+|.++|+|..+++++|++.....+..++..+..++++| +||||+|||++++++++++ +..+..+++.+
T Consensus 5 ~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~------~~~~~~i~~~~ 78 (316)
T PHA02544 5 NPNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV------GAEVLFVNGSD 78 (316)
T ss_pred CCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CccceEeccCc
Confidence 3556799999999999999999999999999999888777655 8999999999999999987 55677788776
Q ss_pred CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCC-CHHHHHHHHHHHHhhcCcceEEEEecCCcccchHh
Q 022641 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l-~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l 202 (294)
. ....++..+..+..... ....+++|+|||+|.+ ....++.|...++..+..+.+|+++|....+.+++
T Consensus 79 ~-~~~~i~~~l~~~~~~~~---------~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 79 C-RIDFVRNRLTRFASTVS---------LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred c-cHHHHHHHHHHHHHhhc---------ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHH
Confidence 3 24444443433322211 1124579999999999 66677888888999888889999999998999999
Q ss_pred hccccEEEecCCCHHHHHHHHH-------HHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhh
Q 022641 203 ASRCAKFRFKPLSEEVMSSRVL-------HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275 (294)
Q Consensus 203 ~~r~~~i~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~ 275 (294)
.+||..+.|++|+.++...++. .++..+++.++++++..+++.+.||.|.+++.++..+. ...++.+++..
T Consensus 149 ~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~--~~~i~~~~l~~ 226 (316)
T PHA02544 149 RSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS--TGKIDAGILSE 226 (316)
T ss_pred HhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc--cCCCCHHHHHH
Confidence 9999999999999888775544 34556789999999999999999999999999996653 34577666554
Q ss_pred h
Q 022641 276 V 276 (294)
Q Consensus 276 ~ 276 (294)
.
T Consensus 227 ~ 227 (316)
T PHA02544 227 V 227 (316)
T ss_pred h
Confidence 3
No 47
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.95 E-value=1e-27 Score=192.39 Aligned_cols=236 Identities=42% Similarity=0.614 Sum_probs=206.8
Q ss_pred cccCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
.....+||+++|+|..+.++++++..+..+.+....++.++++++||||+|||+...+.++.+.++......+.++++++
T Consensus 24 ~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd 103 (360)
T KOG0990|consen 24 SPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD 103 (360)
T ss_pred CcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC
Confidence 34678899999999999999999999999999988899999999999999999999999999988877777789999999
Q ss_pred CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhh
Q 022641 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~ 203 (294)
.++.+..+..+..+.........+. .....++|+||+|.+...+++.|.+.++.+..+.+|++++|.+..+.++++
T Consensus 104 ~rgid~vr~qi~~fast~~~~~fst----~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~q 179 (360)
T KOG0990|consen 104 DRGIDPVRQQIHLFASTQQPTTYST----HAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQ 179 (360)
T ss_pred ccCCcchHHHHHHHHhhccceeccc----cCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhh
Confidence 9999998888887766543211111 124569999999999999999999999999999999999999999999999
Q ss_pred ccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh----CCCCChhhhhhhccc
Q 022641 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSITSKDLISVSGY 279 (294)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~ 279 (294)
+||..+.|.|++..+....+.+++..+....+++....++..+.||.|.++|.|+-...+. ...++-+.+..+.+.
T Consensus 180 sRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~ 259 (360)
T KOG0990|consen 180 SRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGA 259 (360)
T ss_pred cccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999877665 233556667887777
Q ss_pred ccCC
Q 022641 280 PTGG 283 (294)
Q Consensus 280 ~~~~ 283 (294)
+.+.
T Consensus 260 p~~~ 263 (360)
T KOG0990|consen 260 PQPS 263 (360)
T ss_pred CChh
Confidence 6655
No 48
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.95 E-value=1.4e-26 Score=188.86 Aligned_cols=218 Identities=24% Similarity=0.344 Sum_probs=173.1
Q ss_pred CCchhhhhcCCCcchhhcccHHHH---HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
...|+.++++|+.+++++||++++ ..|+..++.++.+.++||||||||||+||+.++.....+ ...|+++++..
T Consensus 124 qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~---SyrfvelSAt~ 200 (554)
T KOG2028|consen 124 QHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH---SYRFVELSATN 200 (554)
T ss_pred ccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC---ceEEEEEeccc
Confidence 466999999999999999999988 467888899999999999999999999999999876221 24577777665
Q ss_pred CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEe--cCCcccchH
Q 022641 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEP 201 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~--~~~~~~~~~ 201 (294)
. ....+++.+........ ...++-||||||+|+++..+++.++..++. ..+.+|.+| |..+.+..+
T Consensus 201 a-~t~dvR~ife~aq~~~~---------l~krkTilFiDEiHRFNksQQD~fLP~VE~--G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 201 A-KTNDVRDIFEQAQNEKS---------LTKRKTILFIDEIHRFNKSQQDTFLPHVEN--GDITLIGATTENPSFQLNAA 268 (554)
T ss_pred c-chHHHHHHHHHHHHHHh---------hhcceeEEEeHHhhhhhhhhhhcccceecc--CceEEEecccCCCccchhHH
Confidence 4 44556666666544322 223456999999999999999999999986 444455554 667889999
Q ss_pred hhccccEEEecCCCHHHHHHHHHHHHHH----h----C-----CCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh----
Q 022641 202 LASRCAKFRFKPLSEEVMSSRVLHICNE----E----G-----LNLDAEALSTLSSISQGDLRRAITYLQGAARLF---- 264 (294)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~----~-----~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---- 264 (294)
+++||.++.+.+++.+.+..+|.+.... + + +.+++.++++++..|.||-|.++|.|+......
T Consensus 269 LlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~ 348 (554)
T KOG2028|consen 269 LLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRS 348 (554)
T ss_pred HHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999985541 1 1 236788999999999999999999999774333
Q ss_pred ----CCCCChhhhhhhccc
Q 022641 265 ----GSSITSKDLISVSGY 279 (294)
Q Consensus 265 ----~~~it~~~v~~~~~~ 279 (294)
+..++.+++++.+..
T Consensus 349 g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 349 GQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred CCcccceecHHHHHHHHhh
Confidence 235899999887754
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.95 E-value=5.9e-26 Score=193.36 Aligned_cols=210 Identities=20% Similarity=0.242 Sum_probs=167.4
Q ss_pred chhhhhcCCCcchhhcccHHHHHHHHHHHHc-----CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
..|..+|+|..|++++|+++.+..+..++.. ...++++|+||||||||++|+++++++ +..+...+...
T Consensus 13 ~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l------~~~~~~~~~~~ 86 (328)
T PRK00080 13 DEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM------GVNIRITSGPA 86 (328)
T ss_pred chhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh------CCCeEEEeccc
Confidence 4567899999999999999999988877753 233579999999999999999999998 44444444433
Q ss_pred CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc------------------Cc
Q 022641 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KV 185 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~------------------~~ 185 (294)
......+...+..+ ...++|+|||+|.++....+.|+..++.+. ..
T Consensus 87 ~~~~~~l~~~l~~l----------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 87 LEKPGDLAAILTNL----------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ccChHHHHHHHHhc----------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 22222222222211 124599999999999888888888887643 23
Q ss_pred ceEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh
Q 022641 186 TRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264 (294)
Q Consensus 186 ~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~ 264 (294)
..+|++|+....+.+++++||. .+.|.+++.+++.+++++.+...++.++++++..|++.|+|++|.+.++++.+..++
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a 230 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFA 230 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 5678888888888899999995 799999999999999999999999999999999999999999999999999766554
Q ss_pred ----CCCCChhhhhhhcccc
Q 022641 265 ----GSSITSKDLISVSGYP 280 (294)
Q Consensus 265 ----~~~it~~~v~~~~~~~ 280 (294)
...|+.+++..++...
T Consensus 231 ~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 231 QVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHcCCCCCCHHHHHHHHHHh
Confidence 4579999999888664
No 50
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.95 E-value=5.8e-26 Score=178.65 Aligned_cols=208 Identities=37% Similarity=0.619 Sum_probs=174.8
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCcc-----------------
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY----------------- 112 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~----------------- 112 (294)
.|.++|+|+.+..+.++++....+......+..||++++||+|+||.|.+.++.+++++....
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl 81 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL 81 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence 599999999999999999999999888887778999999999999999999999999763211
Q ss_pred ------CCcceeecCCCCcc--hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcC
Q 022641 113 ------KSRVLELNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184 (294)
Q Consensus 113 ------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~ 184 (294)
....+++++++.-. ...+.+.++.......-.. .......+++|.|+|.|+.+++..|...|+.+..
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~-----~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-----QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-----ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 22344555555433 2345555555544322111 1112457999999999999999999999999999
Q ss_pred cceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 022641 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (294)
Q Consensus 185 ~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~ 262 (294)
.+++|++||..+.+.+++++||..+.++.|+++++..++..+++++++.++.+.+..|++.++||+|.++.+++.+..
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996654
No 51
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.95 E-value=1.8e-26 Score=211.26 Aligned_cols=215 Identities=24% Similarity=0.348 Sum_probs=167.1
Q ss_pred CCchhhhhcCCCcchhhcccHHHH---HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~---~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
...||.++|+|.++++++|+++.+ ..+.+.+..+..++++|+|||||||||+|+++++.. ...++.+++..
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~------~~~f~~lna~~ 87 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT------RAHFSSLNAVL 87 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh------cCcceeehhhh
Confidence 345999999999999999999988 468888888888899999999999999999999987 45566666653
Q ss_pred CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEe--cCCcccchH
Q 022641 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEP 201 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~--~~~~~~~~~ 201 (294)
. +...++..+........ ...+..+|||||+|.++...++.|+..++. ....+|.++ |..+.+.++
T Consensus 88 ~-~i~dir~~i~~a~~~l~---------~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 88 A-GVKDLRAEVDRAKERLE---------RHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTENPYFEVNKA 155 (725)
T ss_pred h-hhHHHHHHHHHHHHHhh---------hcCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecCCChHhhhhhH
Confidence 2 33333333333221111 012346999999999999999999998875 233344433 334568899
Q ss_pred hhccccEEEecCCCHHHHHHHHHHHHH-------HhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhC------CCC
Q 022641 202 LASRCAKFRFKPLSEEVMSSRVLHICN-------EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG------SSI 268 (294)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~------~~i 268 (294)
+.+||..+.|+|++.+++..++++.+. .+++.+++++++.|++.++||+|.+++.|+.++.... ..|
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~I 235 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDI 235 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceec
Confidence 999999999999999999999999987 4567899999999999999999999999998775431 127
Q ss_pred Chhhhhhhccc
Q 022641 269 TSKDLISVSGY 279 (294)
Q Consensus 269 t~~~v~~~~~~ 279 (294)
|.+.+.+++..
T Consensus 236 t~~~~~e~l~~ 246 (725)
T PRK13341 236 TLAIAEESIQQ 246 (725)
T ss_pred cHHHHHHHHHH
Confidence 77777776654
No 52
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.94 E-value=1.7e-25 Score=196.65 Aligned_cols=225 Identities=29% Similarity=0.399 Sum_probs=182.8
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHc--------------------------------CC--CCcEEEECCCCCCH
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET--------------------------------AN--CPHMLFYGPPGTGK 95 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~--------------------------------~~--~~~ill~Gp~G~GK 95 (294)
.|+++|+|..|.++.|.+..-+.+..||.. ++ ...++|+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 899999999999999999999999999853 01 12399999999999
Q ss_pred HHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHH
Q 022641 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175 (294)
Q Consensus 96 T~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L 175 (294)
||||+.+|++. ++.++++|+++.++...+.+.+..........+ ...++.+|||||||..+....+.+
T Consensus 340 TTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~------adsrP~CLViDEIDGa~~~~Vdvi 407 (877)
T KOG1969|consen 340 TTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNHSVLD------ADSRPVCLVIDEIDGAPRAAVDVI 407 (877)
T ss_pred hHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhccccc------cCCCcceEEEecccCCcHHHHHHH
Confidence 99999999999 999999999999999999988888766543221 113456999999999998889999
Q ss_pred HHHHHh------hc---------------CcceEEEEecCCc-ccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCC
Q 022641 176 RRTMET------YS---------------KVTRFFFICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233 (294)
Q Consensus 176 ~~~l~~------~~---------------~~~~ii~~~~~~~-~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 233 (294)
+.++.. ++ -...||++||+.. .-+..|+..+.++.|.||+..-+.+.|+.+|..+++.
T Consensus 408 lslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr 487 (877)
T KOG1969|consen 408 LSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR 487 (877)
T ss_pred HHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC
Confidence 888861 11 1234899998754 4456677788899999999999999999999999999
Q ss_pred CCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC---CCChhhhhhhcccccCCCCC
Q 022641 234 LDAEALSTLSSISQGDLRRAITYLQGAARLFGS---SITSKDLISVSGYPTGGSGG 286 (294)
Q Consensus 234 ~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~---~it~~~v~~~~~~~~~~~~~ 286 (294)
.+..++..|++++.+|+|.++|.||+++.-..+ .|++.++-+......++..+
T Consensus 488 ~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~s 543 (877)
T KOG1969|consen 488 ADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKNVGAKSNSDS 543 (877)
T ss_pred CCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhhhcccccccc
Confidence 999999999999999999999999999976533 36666654444433444333
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.5e-25 Score=177.19 Aligned_cols=206 Identities=21% Similarity=0.260 Sum_probs=168.8
Q ss_pred hhhcCCCcchhhcccHHHHHHHHHHHHcCC-----CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc
Q 022641 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (294)
Q Consensus 52 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~-----~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (294)
...++|+.+.+++||+++++.|.-.+...+ ..|++|+||||.||||||..+|+++ +..+...++.....
T Consensus 17 e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em------gvn~k~tsGp~leK 90 (332)
T COG2255 17 ERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL------GVNLKITSGPALEK 90 (332)
T ss_pred hcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh------cCCeEecccccccC
Confidence 346789999999999999999988776533 3469999999999999999999999 66666665555444
Q ss_pred hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc------------------CcceE
Q 022641 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRF 188 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~------------------~~~~i 188 (294)
...+...+..+ ..++|+||||||++++...+.|+..|+++. .++.+
T Consensus 91 ~gDlaaiLt~L----------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 91 PGDLAAILTNL----------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred hhhHHHHHhcC----------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 44444444432 234799999999999999999999999654 34446
Q ss_pred EEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---
Q 022641 189 FFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--- 264 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~--- 264 (294)
|.+|.....+...+++||. ..++..++.+++..++.+.+...++.++++....|++.+.|.||-+.++|....-++
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVK 234 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHh
Confidence 7777777778899999998 789999999999999999999999999999999999999999999999999887776
Q ss_pred -CCCCChhhhhhhccc
Q 022641 265 -GSSITSKDLISVSGY 279 (294)
Q Consensus 265 -~~~it~~~v~~~~~~ 279 (294)
...|+.+-...++..
T Consensus 235 ~~~~I~~~ia~~aL~~ 250 (332)
T COG2255 235 GDGDIDRDIADKALKM 250 (332)
T ss_pred cCCcccHHHHHHHHHH
Confidence 455777766666654
No 54
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.94 E-value=2.9e-25 Score=198.89 Aligned_cols=247 Identities=24% Similarity=0.331 Sum_probs=183.0
Q ss_pred chHHHHhhccccccCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCC---
Q 022641 33 SEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP--- 109 (294)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~--- 109 (294)
.+.+..++++.. .-..||.++|+|..|++++|++..++.+...+......+++|+||||||||++|+++.+.+...
T Consensus 38 ~~~~~~~~~~~~-~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s 116 (531)
T TIGR02902 38 KELEKLNKMRAI-RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPAS 116 (531)
T ss_pred HHHHHHHHhhhh-hhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 334444555532 3367999999999999999999999999988887777889999999999999999998765321
Q ss_pred -CccCCcceeecCCCCc-chhHHH-HHHHHHHhh------hcc----cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHH
Q 022641 110 -ELYKSRVLELNASDDR-GINVVR-TKIKTFAAV------AVG----SGQRRGGYPCPPYKIIILDEADSMTEDAQNALR 176 (294)
Q Consensus 110 -~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~------~~~----~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~ 176 (294)
.....+++.+++.... ....+. ..+...... ..+ ...+.+....+.+++|+|||++.|++..++.|+
T Consensus 117 ~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL 196 (531)
T TIGR02902 117 PFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLL 196 (531)
T ss_pred CcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHH
Confidence 1124577888875321 111111 111100000 000 001222333556789999999999999999999
Q ss_pred HHHHhhc----------------------------CcceEEEEe-cCCcccchHhhccccEEEecCCCHHHHHHHHHHHH
Q 022641 177 RTMETYS----------------------------KVTRFFFIC-NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227 (294)
Q Consensus 177 ~~l~~~~----------------------------~~~~ii~~~-~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~ 227 (294)
+.+++.. ..+++|++| +.+..+++++++||..+.|+|++.+++..++++.+
T Consensus 197 ~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 197 KVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred HHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHH
Confidence 9997531 123555554 56788999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh----CCCCChhhhhhhccccc
Q 022641 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSITSKDLISVSGYPT 281 (294)
Q Consensus 228 ~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~ 281 (294)
++.++.+++++++.|..++. |.|.+.++++.++..+ ...|+.+++..++....
T Consensus 277 ~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 277 EKIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGN 333 (531)
T ss_pred HHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCcc
Confidence 99999999999999888765 8999999999988766 23699999999987543
No 55
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.94 E-value=3.6e-25 Score=187.38 Aligned_cols=200 Identities=20% Similarity=0.242 Sum_probs=158.0
Q ss_pred CcchhhcccHHHHHHHHHHHHc-----CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHH
Q 022641 58 KQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (294)
++|++++|+++.+..|..++.. ...++++|+||||||||++|+++++++ ...+.............+..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~------~~~~~~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM------GVNLKITSGPALEKPGDLAA 74 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCCEEEeccchhcCchhHHH
Confidence 3688999999999999988863 344579999999999999999999998 44444444333222233322
Q ss_pred HHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc------------------CcceEEEEecC
Q 022641 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRFFFICNY 194 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~------------------~~~~ii~~~~~ 194 (294)
.+... ....+|+|||++.++...++.|+.+++... .+..+|.+++.
T Consensus 75 ~l~~~----------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~ 138 (305)
T TIGR00635 75 ILTNL----------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR 138 (305)
T ss_pred HHHhc----------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCC
Confidence 22221 123599999999999988888988887544 22567777788
Q ss_pred CcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh----CCCCC
Q 022641 195 ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSIT 269 (294)
Q Consensus 195 ~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~----~~~it 269 (294)
+..+.+++++||. .+.|.+++.+++.+++++.+...++.++++++..|++.++|++|.+.+++..+..++ ...|+
T Consensus 139 ~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it 218 (305)
T TIGR00635 139 AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIIN 218 (305)
T ss_pred ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcC
Confidence 8888899999996 689999999999999999999999999999999999999999999999998776554 34599
Q ss_pred hhhhhhhccc
Q 022641 270 SKDLISVSGY 279 (294)
Q Consensus 270 ~~~v~~~~~~ 279 (294)
.+.+..++..
T Consensus 219 ~~~v~~~l~~ 228 (305)
T TIGR00635 219 RDIALKALEM 228 (305)
T ss_pred HHHHHHHHHH
Confidence 9999888876
No 56
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=1.3e-23 Score=178.40 Aligned_cols=194 Identities=25% Similarity=0.414 Sum_probs=153.5
Q ss_pred hcCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc-----c--C-----C------
Q 022641 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-----Y--K-----S------ 114 (294)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~-----~--~-----~------ 114 (294)
...|..+.+++|++++...|...+..++.++ ++|+||+|+|||++|..+++.+.|... . . +
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 3679999999999999999999999999887 999999999999999999999987310 0 0 0
Q ss_pred ------cceeecCC---------CCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHH
Q 022641 115 ------RVLELNAS---------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179 (294)
Q Consensus 115 ------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l 179 (294)
.+..+... ...+.+.++.....+.... ..+++.|+||||+|.++....+.|++.+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~----------~~g~~rVviIDeAd~l~~~aanaLLk~L 165 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS----------GDGNWRIVIIDPADDMNRNAANAILKTL 165 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc----------ccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence 11112111 0112344443333222211 2245679999999999999999999999
Q ss_pred HhhcCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHH
Q 022641 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (294)
Q Consensus 180 ~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~ 259 (294)
++++....+|++++.+..+.+.+++||..+.|.|++.+++..++.+.....+ ++++.+..+++.++|++|.++++++.
T Consensus 166 EEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 166 EEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred hcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 9998999999999999999999999999999999999999999987543322 77999999999999999999999864
No 57
>PRK04132 replication factor C small subunit; Provisional
Probab=99.92 E-value=7.2e-24 Score=195.18 Aligned_cols=188 Identities=48% Similarity=0.750 Sum_probs=164.3
Q ss_pred EEEEC--CCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEe
Q 022641 85 MLFYG--PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (294)
Q Consensus 85 ill~G--p~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD 162 (294)
-+..| |.+.||||+|.++++++++. ..+..++++|+++.++.+.++..+..+.....-. ..++.++|||
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~--------~~~~KVvIID 637 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIREKVKEFARTKPIG--------GASFKIIFLD 637 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC--------CCCCEEEEEE
Confidence 45668 99999999999999998764 3456899999999999999998887765432211 1235799999
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 022641 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTL 242 (294)
Q Consensus 163 ei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l 242 (294)
|+|.|+..+++.|++.|+.++..+.+|++||++..+.+++++||..+.|.|++.+++...+.+++..+++.++++++..+
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~I 717 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI 717 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhcccccC
Q 022641 243 SSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTG 282 (294)
Q Consensus 243 ~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~ 282 (294)
+..++||+|.++++|+.++.. ...||.+++..+.+.+.+
T Consensus 718 a~~s~GDlR~AIn~Lq~~~~~-~~~It~~~V~~~~~~~~~ 756 (846)
T PRK04132 718 LYIAEGDMRRAINILQAAAAL-DDKITDENVFLVASRARP 756 (846)
T ss_pred HHHcCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHhCCCCH
Confidence 999999999999999987754 456999998887766544
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.92 E-value=2e-23 Score=179.47 Aligned_cols=184 Identities=26% Similarity=0.377 Sum_probs=146.4
Q ss_pred cchhhcccHHHHHHHHHHHHcCC---------CCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc----------------
Q 022641 59 QVKDVAHQEEVVRVLTNTLETAN---------CPH-MLFYGPPGTGKTTTALAIAHQLFGPELY---------------- 112 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~---------~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~---------------- 112 (294)
.|++++|++.++..|.+++..+. .++ ++|+||+|+|||++|+.+++.+.|....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 57899999999999999998875 444 9999999999999999999999886421
Q ss_pred -CCcceeecCC-CCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEE
Q 022641 113 -KSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (294)
Q Consensus 113 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~ 190 (294)
...+..+... .....+.++..+......+ ..+++.|+||||+|.++...++.|++.+++++....+|+
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p----------~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRP----------STGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCc----------ccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 1122222222 2234556665555443322 123567999999999999999999999999999999999
Q ss_pred EecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHH
Q 022641 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (294)
Q Consensus 191 ~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l 257 (294)
+|+.+..+++.+++||..+.|.+|+.+++..++.+ .. .++++.+..++..++|+++.++.++
T Consensus 153 ~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~--~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 153 CAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RD--GVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred EECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hc--CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999999999999999999999888852 22 3678889999999999999887664
No 59
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.91 E-value=6.6e-23 Score=166.07 Aligned_cols=199 Identities=15% Similarity=0.161 Sum_probs=146.2
Q ss_pred cchhhc--ccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHH
Q 022641 59 QVKDVA--HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (294)
Q Consensus 59 ~~~~~~--g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
+|++++ ++..++..+.++......++++|+||+||||||+++++++++... +..+..+....... ...+....
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~---~~~v~y~~~~~~~~--~~~~~~~~ 94 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR---GRAVGYVPLDKRAW--FVPEVLEG 94 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEEHHHHhh--hhHHHHHH
Confidence 455555 467788888888877766789999999999999999999987422 12223332221100 01111111
Q ss_pred HHhhhcccCccCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhhcC--cceEEEEecCCc-c---cchHhhccc--
Q 022641 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK--VTRFFFICNYIS-R---IIEPLASRC-- 206 (294)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--~~~~~~L~~~l~~~~~--~~~ii~~~~~~~-~---~~~~l~~r~-- 206 (294)
+. +.++|+|||++.+. +..+..|+.+++.... ...+|++++.+. . +.+.+.+|+
T Consensus 95 ~~----------------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~ 158 (235)
T PRK08084 95 ME----------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDW 158 (235)
T ss_pred hh----------------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhC
Confidence 11 12499999999985 3445667777765543 346788876542 2 578999999
Q ss_pred -cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHH---hCCCCChhhhhhhcc
Q 022641 207 -AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL---FGSSITSKDLISVSG 278 (294)
Q Consensus 207 -~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~---~~~~it~~~v~~~~~ 278 (294)
.++.+.||+.+++..++++.+...|+.++++++++|++.++||+|.+++.++.+... .+..||.+.++++++
T Consensus 159 g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 159 GQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred CceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 599999999999999999989889999999999999999999999999999986533 257799999988764
No 60
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=1.3e-22 Score=173.21 Aligned_cols=190 Identities=24% Similarity=0.403 Sum_probs=150.6
Q ss_pred cCCCcchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCccCC-------------------
Q 022641 55 YRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKS------------------- 114 (294)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~~~------------------- 114 (294)
..|..+.+++|++.++..|.+.+..++.++ ++|+||+|+||+++|.++++.++|......
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 679999999999999999999999999888 999999999999999999999987542110
Q ss_pred ---------cceeecCC--C-------CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHH
Q 022641 115 ---------RVLELNAS--D-------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALR 176 (294)
Q Consensus 115 ---------~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~ 176 (294)
.+..+... . ...++.++.....+... ...+.+.|+||||+|.++....+.|+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~----------~~~~~~kVviIDead~m~~~aanaLL 162 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT----------AAEGGWRVVIVDTADEMNANAANALL 162 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC----------cccCCCEEEEEechHhcCHHHHHHHH
Confidence 11222110 1 11234444433332211 12245679999999999999999999
Q ss_pred HHHHhhcCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHH
Q 022641 177 RTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (294)
Q Consensus 177 ~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~ 256 (294)
+.+++.+....+|++|+.+..+.+.+++||..+.|.|++.+++..++... +...+++.+..++..++|+++.++.+
T Consensus 163 K~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 163 KVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999888899999999998999999999999999999999999998653 34456666688899999999999988
Q ss_pred HH
Q 022641 257 LQ 258 (294)
Q Consensus 257 l~ 258 (294)
++
T Consensus 239 l~ 240 (365)
T PRK07471 239 AG 240 (365)
T ss_pred hc
Confidence 86
No 61
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.2e-22 Score=165.73 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=150.9
Q ss_pred CcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
.+++++-|.+..++.+++.+.- ..+..++||||||||||.||+++|++. +..|+.+.++..
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T------~AtFIrvvgSEl 221 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT------DATFIRVVGSEL 221 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CceEEEeccHHH
Confidence 4678889999999999998754 233459999999999999999999998 888998887764
Q ss_pred cc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh-----h
Q 022641 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET-----Y 182 (294)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~-----~ 182 (294)
.. ...+++.+.-.... .+.+|||||+|.+. .+.|..+++++.+ .
T Consensus 222 VqKYiGEGaRlVRelF~lArek--------------aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREK--------------APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhc--------------CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 32 22333433332222 24599999999873 3456666666653 2
Q ss_pred cCcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCc-HHHHHHHHH
Q 022641 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQ 258 (294)
Q Consensus 183 ~~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~-~r~~~~~l~ 258 (294)
..++.+|++||.+..++|++++ |+. .|+|+.|+.+...++++-+.++..+. ++-.++.|++.+.|- --.+..++.
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICT 366 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHH
Confidence 3578899999999999999987 887 89999999999999998888764432 223377777776552 233344555
Q ss_pred HHHHHh----CCCCChhhhhhhcccccCC
Q 022641 259 GAARLF----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 259 ~~~~~~----~~~it~~~v~~~~~~~~~~ 283 (294)
.|..++ +..+|++|+.++...+...
T Consensus 367 EAGm~AiR~~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 367 EAGMFAIRERRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred HHhHHHHHhccCeecHHHHHHHHHHHHhc
Confidence 555555 5679999999998886654
No 62
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.90 E-value=2e-22 Score=157.64 Aligned_cols=215 Identities=25% Similarity=0.265 Sum_probs=156.3
Q ss_pred hhcCCCcchhhcccHHHHH---HHHHHHHcC------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 53 EKYRPKQVKDVAHQEEVVR---VLTNTLETA------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~---~l~~~l~~~------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
+......+++++||+.+++ .+...|.+. .+.|++|+||||||||++|+++++++ ..+++.+.+..
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~------kvp~l~vkat~ 186 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA------KVPLLLVKATE 186 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc------CCceEEechHH
Confidence 4455668899999998885 455555542 45689999999999999999999998 78888887766
Q ss_pred Ccchh--HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHHHHhhc--Ccce
Q 022641 124 DRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMETYS--KVTR 187 (294)
Q Consensus 124 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~------------~~~~~L~~~l~~~~--~~~~ 187 (294)
..+.+ .....+..+..... ...++++||||+|.+.. ...|.|+.-|+... ..++
T Consensus 187 liGehVGdgar~Ihely~rA~----------~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 187 LIGEHVGDGARRIHELYERAR----------KAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHhhhHHHHHHHHHHHHH----------hcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 44332 22222333322211 12246999999998732 35677887777544 4567
Q ss_pred EEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC----cHHH--HHHHHHHH
Q 022641 188 FFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----DLRR--AITYLQGA 260 (294)
Q Consensus 188 ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G----~~r~--~~~~l~~~ 260 (294)
.|.+||.+..+++++++||. .|+|.-|+.+++.++++++++..-++++.. ++++++.++| |+.. +-..|..+
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~A 335 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRA 335 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHH
Confidence 88889999999999999998 899999999999999999998876666555 7788877655 4332 22345555
Q ss_pred HHHhCCCCChhhhhhhcccccCCC
Q 022641 261 ARLFGSSITSKDLISVSGYPTGGS 284 (294)
Q Consensus 261 ~~~~~~~it~~~v~~~~~~~~~~~ 284 (294)
..-..+.|+.+|+..++.....+.
T Consensus 336 i~ed~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 336 IAEDREKVEREDIEKALKKERKRR 359 (368)
T ss_pred HHhchhhhhHHHHHHHHHhhcccc
Confidence 555577899999999998644443
No 63
>PRK06893 DNA replication initiation factor; Validated
Probab=99.90 E-value=3.6e-22 Score=161.29 Aligned_cols=202 Identities=13% Similarity=0.182 Sum_probs=139.1
Q ss_pred CCCcchhhcccHHHH--HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH
Q 022641 56 RPKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~--~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (294)
.+.+|+++++.+... ..+.+.......+.++|+||||||||||++++++++.... ....++.++...... ...
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~y~~~~~~~~~~----~~~ 85 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ-RTAIYIPLSKSQYFS----PAV 85 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CCeEEeeHHHhhhhh----HHH
Confidence 456788888554332 2333333333445689999999999999999999974322 122222222111111 111
Q ss_pred HHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhhcCc--ceEEEEecCCc-c---cchHhhcc
Q 022641 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKV--TRFFFICNYIS-R---IIEPLASR 205 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--~~~~~~L~~~l~~~~~~--~~ii~~~~~~~-~---~~~~l~~r 205 (294)
+.. ..+.++|+|||++.+. ......|+.+++..... ..++++++... . ..+.+.+|
T Consensus 86 ~~~----------------~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sR 149 (229)
T PRK06893 86 LEN----------------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASR 149 (229)
T ss_pred Hhh----------------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHH
Confidence 111 1133599999999874 33445688888766543 23455565432 2 34789999
Q ss_pred cc---EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhhhcc
Q 022641 206 CA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (294)
Q Consensus 206 ~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~ 278 (294)
+. .+.+.+|+.+++..++++.+..+++.++++++++|++.++||+|.+.+.++...... ++.||.+.++++++
T Consensus 150 l~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 150 LTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred HhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 86 899999999999999999999999999999999999999999999999988664322 56799999988765
No 64
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=8.7e-22 Score=165.14 Aligned_cols=188 Identities=22% Similarity=0.340 Sum_probs=143.9
Q ss_pred cchhhcccHHHHHHHHHHHHcCCCC-cEEEECCCCCCHHHHHHHHHHHhcCCCc------------cCCcceeecCCC--
Q 022641 59 QVKDVAHQEEVVRVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPEL------------YKSRVLELNASD-- 123 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~-~ill~Gp~G~GKT~la~~la~~~~~~~~------------~~~~~~~~~~~~-- 123 (294)
.|++++|++.++..|...+..++.+ .++|+||+|+||+++|.++++.+.|... ....+..+.+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 4789999999999999999998864 5999999999999999999999987641 111222222110
Q ss_pred ---------------------CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 022641 124 ---------------------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (294)
Q Consensus 124 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~ 182 (294)
....+.+++....+... ...+.+.|+|||+++.++....+.|++.++++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~----------p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP 151 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRP----------PLEAPRKVVVIEDAETMNEAAANALLKTLEEP 151 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccC----------cccCCceEEEEEchhhcCHHHHHHHHHHHhCC
Confidence 01122333322222211 12345779999999999999999999999998
Q ss_pred cCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHH
Q 022641 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (294)
Q Consensus 183 ~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~ 260 (294)
+ +..+|++++.+..+.+.+++||..+.|.|++.+++..+|.+....++. +.....++..++|+++.+++.++..
T Consensus 152 p-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---~~~~~~l~~~a~Gs~~~al~~l~~~ 225 (314)
T PRK07399 152 G-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---NINFPELLALAQGSPGAAIANIEQL 225 (314)
T ss_pred C-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc---hhHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8 788999999999999999999999999999999999999876532221 2235678899999999999988754
No 65
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=9.2e-22 Score=166.60 Aligned_cols=185 Identities=22% Similarity=0.371 Sum_probs=149.8
Q ss_pred cchhhcccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc--cCCcceeecC--CCCcchhHHHHH
Q 022641 59 QVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--YKSRVLELNA--SDDRGINVVRTK 133 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~ 133 (294)
.|++++|++.+++.+..++..++.++ ++|+||+|+|||++|+.+++.+.|... ....+..+.. ......+.+++.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 57899999999999999999988877 689999999999999999999987532 2233434433 223345566665
Q ss_pred HHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEecC
Q 022641 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~ 213 (294)
...+...+ ..+++.++|||++|.++....+.|++.+++++..+.+|++|+.+..+.+.+++||..+.|.+
T Consensus 82 ~~~~~~~p----------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~ 151 (313)
T PRK05564 82 IEEVNKKP----------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNR 151 (313)
T ss_pred HHHHhcCc----------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCC
Confidence 55433322 12456799999999999999999999999999999999999989999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHH
Q 022641 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (294)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l 257 (294)
++.+++..++.+.+. .++++.+..++.+++|++..+...+
T Consensus 152 ~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~ 191 (313)
T PRK05564 152 LSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFI 191 (313)
T ss_pred cCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 999999998865442 5788889999999999888776543
No 66
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=9.2e-22 Score=177.14 Aligned_cols=205 Identities=22% Similarity=0.324 Sum_probs=136.6
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCC-----cEEEECCCCCCHHHHHHHHHHHhcCCCccCCccee-e
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP-----HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE-L 119 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~-----~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~-~ 119 (294)
....||.++|+|..+++++|+++.+..+..|+...... .++|+||+|||||++++.+++.+. ..+.+ .
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~------~~~~Ew~ 142 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG------IQVQEWS 142 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh------hHHHHHh
Confidence 45679999999999999999999999999998764332 299999999999999999999872 22211 1
Q ss_pred cCC------C---------------CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH---HHHHH
Q 022641 120 NAS------D---------------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED---AQNAL 175 (294)
Q Consensus 120 ~~~------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~---~~~~L 175 (294)
+.. + ..........+.... ......+.....+..||+|||++.+... .+..+
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~----~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~l 218 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRAT----NKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEI 218 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHH----hhhcccccccCCceeEEEeecchhhchhhHHHHHHH
Confidence 100 0 001111222222211 0000001111245679999999766432 23333
Q ss_pred HH--HHHhhcCcceEEEEecCC-----------cc----cchHhhc--cccEEEecCCCHHHHHHHHHHHHHHhCCC---
Q 022641 176 RR--TMETYSKVTRFFFICNYI-----------SR----IIEPLAS--RCAKFRFKPLSEEVMSSRVLHICNEEGLN--- 233 (294)
Q Consensus 176 ~~--~l~~~~~~~~ii~~~~~~-----------~~----~~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--- 233 (294)
+. ..+ ...+.+|++++.. +. +.+++++ |+..|.|+|++..++.+.|.+++..++..
T Consensus 219 Lr~~~~e--~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 219 LRWKYVS--IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHHHhhc--CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 33 222 2344555555421 11 3368887 55689999999999999999999876432
Q ss_pred ---C-CHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 022641 234 ---L-DAEALSTLSSISQGDLRRAITYLQGAAR 262 (294)
Q Consensus 234 ---~-~~~~l~~l~~~~~G~~r~~~~~l~~~~~ 262 (294)
+ +++++..|+..++||+|.|+++|++++.
T Consensus 297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSGDIRSAINSLQFSSS 329 (637)
T ss_pred ccccCCHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 2 5689999999999999999999999864
No 67
>PRK08727 hypothetical protein; Validated
Probab=99.89 E-value=2.4e-21 Score=156.76 Aligned_cols=200 Identities=18% Similarity=0.228 Sum_probs=142.1
Q ss_pred cchhhcc-cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHH
Q 022641 59 QVKDVAH-QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (294)
Q Consensus 59 ~~~~~~g-~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
+|+++++ .......+...........++|+||+||||||+++++++++.... ..+..++..... ..+...+..+
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~~~~~~--~~~~~~~~~l 91 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLPLQAAA--GRLRDALEAL 91 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEeHHHhh--hhHHHHHHHH
Confidence 5666654 444444444443333333499999999999999999999874332 233333322211 1111111111
Q ss_pred HhhhcccCccCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhhcC-cceEEEEecCCcc----cchHhhcc---cc
Q 022641 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYISR----IIEPLASR---CA 207 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--~~~~~~L~~~l~~~~~-~~~ii~~~~~~~~----~~~~l~~r---~~ 207 (294)
.+.++|+|||++.+. ...+..++.+++.... ...+|++++.+.. +.+.+.+| +.
T Consensus 92 ----------------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~ 155 (233)
T PRK08727 92 ----------------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCI 155 (233)
T ss_pred ----------------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCc
Confidence 123599999999985 3455678888776544 3458888875432 46899999 56
Q ss_pred EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHH---HhCCCCChhhhhhhccc
Q 022641 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR---LFGSSITSKDLISVSGY 279 (294)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~---~~~~~it~~~v~~~~~~ 279 (294)
.+.++||+.+++..++++++...++.++++++++|++.++||+|.++++++.+.. ..++.||.+.+++++..
T Consensus 156 ~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 156 RIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRRVLEE 230 (233)
T ss_pred eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999988886643 33677999999988764
No 68
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.89 E-value=2.4e-21 Score=156.92 Aligned_cols=200 Identities=17% Similarity=0.192 Sum_probs=147.6
Q ss_pred CCCcchhhc--ccHHHHHHHHHHHHc-CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHH
Q 022641 56 RPKQVKDVA--HQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (294)
Q Consensus 56 ~~~~~~~~~--g~~~~~~~l~~~l~~-~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (294)
.|.+|++++ ++...+..+..+... ...++++|+||+||||||+|+++++++... +..++.+++.....
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~---~~~~~~i~~~~~~~------ 83 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG---GRNARYLDAASPLL------ 83 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEehHHhHH------
Confidence 345667666 346677777777653 234569999999999999999999987332 33445554433211
Q ss_pred HHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcc--eEEEEecCCc---ccchHhhccc-
Q 022641 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT--RFFFICNYIS---RIIEPLASRC- 206 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~--~ii~~~~~~~---~~~~~l~~r~- 206 (294)
.+ . .....++|+|||++.++...+..|+.+++...... .++++++... .+.+.+.+|+
T Consensus 84 ~~----~------------~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 84 AF----D------------FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred HH----h------------hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 00 0 01123599999999999888888988887654332 3555554322 2456778786
Q ss_pred --cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhhhcccc
Q 022641 207 --AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGYP 280 (294)
Q Consensus 207 --~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~~~ 280 (294)
..+.++||+.++...++...+...++.+++++++.|++.++||+|.+.++++....++ +..||.+.++++++.+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~~~ 226 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQP 226 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Confidence 5899999999999999999998999999999999999999999999999888876544 6779999999998753
No 69
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=3.4e-21 Score=158.94 Aligned_cols=193 Identities=21% Similarity=0.235 Sum_probs=134.7
Q ss_pred cchhhcccHHHHHHHHHHHHc---------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCc-cCCcceeecCC
Q 022641 59 QVKDVAHQEEVVRVLTNTLET---------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNAS 122 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~---------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~-~~~~~~~~~~~ 122 (294)
.+.+++|.+.++..+.+.... +...+++|+||||||||++|+++++.+..... ....++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 356788998888776544311 13346999999999999999999998743221 22345555544
Q ss_pred CCcchhH--HHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHHHhhcCcceEEEEe
Q 022641 123 DDRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFIC 192 (294)
Q Consensus 123 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--------~~~~~~L~~~l~~~~~~~~ii~~~ 192 (294)
+..+... ....+...... ...++|||||+|.+. ...++.|++.++.......+|+++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~-------------a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKK-------------ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HhhhhhccchHHHHHHHHHh-------------ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 3222110 01111111111 112499999999875 346788888988876676666665
Q ss_pred cCC-----cccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh----------ccCcHHHHHHH
Q 022641 193 NYI-----SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI----------SQGDLRRAITY 256 (294)
Q Consensus 193 ~~~-----~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~----------~~G~~r~~~~~ 256 (294)
... ..+.+++.+||. .+.|++++.+++.+++++++...+..++++++..+++. +.||.|.+.|+
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 432 235789999995 79999999999999999999998889999998888543 46999999999
Q ss_pred HHHHHHHh
Q 022641 257 LQGAARLF 264 (294)
Q Consensus 257 l~~~~~~~ 264 (294)
++.+....
T Consensus 231 ~e~a~~~~ 238 (261)
T TIGR02881 231 IEKAIRRQ 238 (261)
T ss_pred HHHHHHHH
Confidence 99876543
No 70
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.89 E-value=1.5e-21 Score=153.53 Aligned_cols=166 Identities=28% Similarity=0.444 Sum_probs=128.5
Q ss_pred HHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc------------------CCcceeecCC-CCcchhHHH
Q 022641 72 VLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNAS-DDRGINVVR 131 (294)
Q Consensus 72 ~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~------------------~~~~~~~~~~-~~~~~~~~~ 131 (294)
.|.+.+..++.++ ++|+||+|+|||++++.+++.+.|.... ...+..+... ...+.+.++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~ 82 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVR 82 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHH
Confidence 4667777777655 9999999999999999999999774111 1112222221 123445555
Q ss_pred HHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEe
Q 022641 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211 (294)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~ 211 (294)
..+..+...+ ..+.+.++||||+|.++...++.|++.+++.+....+|++++....+.+++.+||..+.|
T Consensus 83 ~i~~~~~~~~----------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~ 152 (188)
T TIGR00678 83 ELVEFLSRTP----------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPF 152 (188)
T ss_pred HHHHHHccCc----------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeC
Confidence 5444433222 124567999999999999999999999999888899999998888899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHH
Q 022641 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRA 253 (294)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~ 253 (294)
.|++.+++..++.+. | +++++++.+++.++|++|.+
T Consensus 153 ~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred CCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 999999999999654 4 78999999999999999864
No 71
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.88 E-value=4.8e-21 Score=169.60 Aligned_cols=211 Identities=23% Similarity=0.363 Sum_probs=140.0
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCC-----CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~-----~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
....||.++|+|...+++..+++.+.+++.|+.... .+.++|+||+||||||+++.+++++ +..+.+-.
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el------g~~v~Ew~ 77 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL------GFEVQEWI 77 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh------CCeeEEec
Confidence 467799999999999999999999999999997632 2348999999999999999999998 33333321
Q ss_pred CCCC-----------cc----hhHHHHHHHHHHhhhcccCc-----cCCCCCCCCcEEEEEeCCCCCCHH----HHHHHH
Q 022641 121 ASDD-----------RG----INVVRTKIKTFAAVAVGSGQ-----RRGGYPCPPYKIIILDEADSMTED----AQNALR 176 (294)
Q Consensus 121 ~~~~-----------~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~lliiDei~~l~~~----~~~~L~ 176 (294)
.+.. .+ ..........+......... ..+.....+..||+|||+..+... ..+.|.
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~ 157 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALR 157 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHH
Confidence 1110 00 00001111222222111111 112223356789999999876432 334455
Q ss_pred HHHHhhcC-cceEEEEe-c------CCc--------ccchHhhcc--ccEEEecCCCHHHHHHHHHHHHHHh-----CC-
Q 022641 177 RTMETYSK-VTRFFFIC-N------YIS--------RIIEPLASR--CAKFRFKPLSEEVMSSRVLHICNEE-----GL- 232 (294)
Q Consensus 177 ~~l~~~~~-~~~ii~~~-~------~~~--------~~~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~-----~~- 232 (294)
+++..... +.++|++- . ... .+.+.+... +..|.|+|.....+++.|.+++..+ +.
T Consensus 158 ~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~ 237 (519)
T PF03215_consen 158 QYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKN 237 (519)
T ss_pred HHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCc
Confidence 55554334 44444441 1 111 245666664 4589999999999999999999987 22
Q ss_pred CCC--HHHHHHHHhhccCcHHHHHHHHHHHHH
Q 022641 233 NLD--AEALSTLSSISQGDLRRAITYLQGAAR 262 (294)
Q Consensus 233 ~~~--~~~l~~l~~~~~G~~r~~~~~l~~~~~ 262 (294)
..+ .+.++.|++.++||||.|++.||+++.
T Consensus 238 ~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 238 KVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 222 346999999999999999999999997
No 72
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.88 E-value=2.4e-21 Score=157.11 Aligned_cols=199 Identities=17% Similarity=0.177 Sum_probs=145.0
Q ss_pred Ccchhhc--ccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHH
Q 022641 58 KQVKDVA--HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (294)
Q Consensus 58 ~~~~~~~--g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (294)
.+|++++ ++...+..+.+++......+++|+||+|||||++|+.+++.+... +..++.+++...... ....+.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~---~~~~~~i~~~~~~~~--~~~~~~ 86 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER---GKSAIYLPLAELAQA--DPEVLE 86 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEeHHHHHHh--HHHHHh
Confidence 3455554 467788999998877666789999999999999999999987422 234444544332211 011111
Q ss_pred HHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHHhhc-CcceEEEEecCCc-c--cc-hHhhcccc-
Q 022641 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALRRTMETYS-KVTRFFFICNYIS-R--II-EPLASRCA- 207 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~--~~~~L~~~l~~~~-~~~~ii~~~~~~~-~--~~-~~l~~r~~- 207 (294)
. ..+.++|+|||++.++.. .++.|+.+++... ....+|++++... . .. +.+.+|+.
T Consensus 87 ~----------------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 87 G----------------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred h----------------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 1 012349999999999763 3777887776533 2346777776432 2 22 67777763
Q ss_pred --EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhhhc
Q 022641 208 --KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVS 277 (294)
Q Consensus 208 --~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~~~ 277 (294)
.+.++|++.++...+++.++...++.+++++++.|++.++||+|.+.+.++.+...+ ++.||.+.+.+++
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 799999999999999999988889999999999999999999999999988766433 6779999988775
No 73
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.4e-21 Score=165.72 Aligned_cols=185 Identities=40% Similarity=0.607 Sum_probs=149.9
Q ss_pred hhcccHHHHHHHHHHHH-cCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc------------------cCCcceeecC
Q 022641 62 DVAHQEEVVRVLTNTLE-TANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNA 121 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~-~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~------------------~~~~~~~~~~ 121 (294)
++++++.....+..+.. .++.++ ++|+||||+|||++|.++++.+.|... ....++++++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 46778888888888887 566777 999999999999999999999987553 3468888999
Q ss_pred CCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchH
Q 022641 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201 (294)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~ 201 (294)
++....+...+.+..+.......+. .++..+++|||+|.++.+.++.|++.+++++....+|++||.+..+.+.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccch
Confidence 9887755445555555544332221 2456799999999999999999999999999999999999999999999
Q ss_pred hhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 022641 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (294)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 263 (294)
+.+||..+.|.|++........ + ++.+..+...+.||.|.+++.++..+..
T Consensus 156 I~SRc~~i~f~~~~~~~~i~~~------e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 156 IRSRCQRIRFKPPSRLEAIAWL------E-----DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred hhhcceeeecCCchHHHHHHHh------h-----ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999999995544433333 2 6778899999999999999999988875
No 74
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=1.3e-20 Score=160.02 Aligned_cols=183 Identities=27% Similarity=0.394 Sum_probs=141.9
Q ss_pred cchhhcc-cHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc------------------CCccee
Q 022641 59 QVKDVAH-QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLE 118 (294)
Q Consensus 59 ~~~~~~g-~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~------------------~~~~~~ 118 (294)
.|+.+.| ++.+++.|...+..++.++ ++|+||+|+||+++|+.+++.+.|.... ...+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 3677888 8999999999999998888 5999999999999999999999886421 112222
Q ss_pred ecCC-CCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcc
Q 022641 119 LNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (294)
Q Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~ 197 (294)
+... .....+.+++....+...+ ..+.+.++||||++.++...++.|++.+++++..+.+|++|+.+..
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~----------~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSG----------VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCC----------cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 2221 1233455555554433222 1234579999999999999999999999999999999999999999
Q ss_pred cchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHH
Q 022641 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (294)
Q Consensus 198 ~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~ 258 (294)
+.+.+++||..+.|.+++.+++..++. .+| ++++....++..+ |+++.++.++.
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~~-g~~~~A~~l~~ 206 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGLT-NSVEEALALSE 206 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHHc-CCHHHHHHHhc
Confidence 999999999999999999999988774 445 5666666666654 68888887654
No 75
>PRK06620 hypothetical protein; Validated
Probab=99.87 E-value=1.4e-20 Score=149.81 Aligned_cols=192 Identities=13% Similarity=0.154 Sum_probs=131.2
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHcC-C-C--CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-N-C--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~-~-~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
++..+|...+|-.-..+..+...+..|.... . . +.++|+||||+|||||++++++.. +..+ +.....
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~------~~~~--~~~~~~- 78 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS------NAYI--IKDIFF- 78 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc------CCEE--cchhhh-
Confidence 4444444333322223566777777776532 1 1 459999999999999999988765 2111 110000
Q ss_pred chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcC-cceEEEEecCC---cccchH
Q 022641 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK-VTRFFFICNYI---SRIIEP 201 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~---~~~~~~ 201 (294)
. ... ....++|+|||+|.+... .|+.+++.... ...++++++.+ ..+ ++
T Consensus 79 ~--------~~~---------------~~~~d~lliDdi~~~~~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~ 131 (214)
T PRK06620 79 N--------EEI---------------LEKYNAFIIEDIENWQEP---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PD 131 (214)
T ss_pred c--------hhH---------------HhcCCEEEEeccccchHH---HHHHHHHHHHhcCCEEEEEcCCCccccch-HH
Confidence 0 000 012359999999977432 34444433222 23455555422 234 88
Q ss_pred hhcccc---EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhh
Q 022641 202 LASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLIS 275 (294)
Q Consensus 202 l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~ 275 (294)
+++|+. ++.+.+|+.+++..++++.+...++.++++++++|++.++||+|.+++.++.+...+ ++.||.+.+++
T Consensus 132 L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~~~ 211 (214)
T PRK06620 132 LSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKE 211 (214)
T ss_pred HHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999998 899999999999999999999889999999999999999999999999999865432 56699999887
Q ss_pred hc
Q 022641 276 VS 277 (294)
Q Consensus 276 ~~ 277 (294)
++
T Consensus 212 ~l 213 (214)
T PRK06620 212 VL 213 (214)
T ss_pred Hh
Confidence 75
No 76
>PRK05642 DNA replication initiation factor; Validated
Probab=99.87 E-value=3e-20 Score=150.35 Aligned_cols=199 Identities=15% Similarity=0.161 Sum_probs=139.8
Q ss_pred cchhhc-c-cHHHHHHHHHHHHcC---CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH
Q 022641 59 QVKDVA-H-QEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (294)
Q Consensus 59 ~~~~~~-g-~~~~~~~l~~~l~~~---~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (294)
+|++++ | +..++..+.++.... ..++++|+||+|+|||||++++++++... +..++.++..+.... ....
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~---~~~v~y~~~~~~~~~--~~~~ 91 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR---GEPAVYLPLAELLDR--GPEL 91 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEeeHHHHHhh--hHHH
Confidence 555555 3 234444555444321 12458999999999999999999887322 234444443321110 0111
Q ss_pred HHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhhcC-cceEEEEecCCc----ccchHhhccc
Q 022641 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYIS----RIIEPLASRC 206 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--~~~~~~L~~~l~~~~~-~~~ii~~~~~~~----~~~~~l~~r~ 206 (294)
...+ .+.++|+|||++.+. +...+.|+.+++.... ...++++++... ...+.+.+|+
T Consensus 92 ~~~~----------------~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl 155 (234)
T PRK05642 92 LDNL----------------EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRL 155 (234)
T ss_pred HHhh----------------hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHH
Confidence 1111 122599999999875 3446778888887655 456777776432 2368899999
Q ss_pred ---cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhhhcc
Q 022641 207 ---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (294)
Q Consensus 207 ---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~ 278 (294)
..+.+.+|+.+++..+++..+...++.++++++++|++.++||+|.+.+.++.....+ ++.||.+.++++++
T Consensus 156 ~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 156 TLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHhc
Confidence 5899999999999999998888889999999999999999999999999888775433 57799999998875
No 77
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.86 E-value=7.4e-20 Score=166.59 Aligned_cols=233 Identities=21% Similarity=0.240 Sum_probs=166.7
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC----ccCCcceeecCCC
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD 123 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~~~ 123 (294)
..|..+.++|..|++++|+...+..+...+.....++++|+||+|||||++|+.+.+...... .....++.+++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 457788899999999999999998888888777777899999999999999999987763211 1245677777654
Q ss_pred Ccc-hhHHHH-HHH-----------HHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-------
Q 022641 124 DRG-INVVRT-KIK-----------TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------- 183 (294)
Q Consensus 124 ~~~-~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~------- 183 (294)
... ...+.. .+. .............+.......++|||||++.|+...++.|+..+++..
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~ 300 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSY 300 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecce
Confidence 311 111100 000 000000000011111223345699999999999999999999997532
Q ss_pred -------------------Cc--ceEEEE-ecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 022641 184 -------------------KV--TRFFFI-CNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241 (294)
Q Consensus 184 -------------------~~--~~ii~~-~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 241 (294)
.. +.+|.+ ++.+..+.+++++||..+.|.|++.+++..++++.+...++.+++++++.
T Consensus 301 ~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~ 380 (615)
T TIGR02903 301 YDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEEL 380 (615)
T ss_pred eccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 11 223333 34566788999999999999999999999999999998888899999999
Q ss_pred HHhhccCcHHHHHHHHHHHHHHh------------CCCCChhhhhhhccccc
Q 022641 242 LSSISQGDLRRAITYLQGAARLF------------GSSITSKDLISVSGYPT 281 (294)
Q Consensus 242 l~~~~~G~~r~~~~~l~~~~~~~------------~~~it~~~v~~~~~~~~ 281 (294)
|.+++. +.|.+++.|+.+..+. ...|+.+++.++++...
T Consensus 381 L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 381 IARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 998865 6699999998765442 12589999999998765
No 78
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9.3e-21 Score=165.73 Aligned_cols=209 Identities=21% Similarity=0.220 Sum_probs=160.2
Q ss_pred hcCCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 54 KYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
.....+|+++-|++++++.|.+.+.- ..+..++|+||||||||++|+++|++. +.+|+.+.
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~------~~nFlsvk 500 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA------GMNFLSVK 500 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh------cCCeeecc
Confidence 44556899999999999999877632 233459999999999999999999999 78888886
Q ss_pred CCCC------cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhhc
Q 022641 121 ASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS 183 (294)
Q Consensus 121 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~~ 183 (294)
+... .+...++..+........ .|||+||+|.+. ....+.|+.-|+...
T Consensus 501 gpEL~sk~vGeSEr~ir~iF~kAR~~aP--------------~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 501 GPELFSKYVGESERAIREVFRKARQVAP--------------CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE 566 (693)
T ss_pred CHHHHHHhcCchHHHHHHHHHHHhhcCC--------------eEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc
Confidence 6543 334456665555444332 499999999873 235677777777544
Q ss_pred --CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHhhccC-cHHHHHHH
Q 022641 184 --KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITY 256 (294)
Q Consensus 184 --~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~l~~~~~G-~~r~~~~~ 256 (294)
.++.+|.+||.+..+++++++ |+. .|++++|+.+-..++++..+++ ++++++ .++.|++.|.| +-..+..+
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~l 644 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAV 644 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChHHHHHH
Confidence 356678888999999999999 888 8999999999999999887754 666666 68899998765 45667778
Q ss_pred HHHHHHHh------CCCCChhhhhhhcccccCCC
Q 022641 257 LQGAARLF------GSSITSKDLISVSGYPTGGS 284 (294)
Q Consensus 257 l~~~~~~~------~~~it~~~v~~~~~~~~~~~ 284 (294)
++.|+..+ ...|+.+|+.+++.......
T Consensus 645 Cq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 645 CQEAALLALRESIEATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHhhcccC
Confidence 88888777 34688999988887766543
No 79
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.86 E-value=3.1e-20 Score=156.99 Aligned_cols=178 Identities=23% Similarity=0.330 Sum_probs=144.1
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc------------------cCCcceeecCC---C
Q 022641 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNAS---D 123 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~------------------~~~~~~~~~~~---~ 123 (294)
+....+.+.+.+..++.++ ++|+||+|+||+++|.++|+.+.|... .+..+..+... .
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 4566778888888888877 889999999999999999999988532 12233444332 2
Q ss_pred CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhh
Q 022641 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~ 203 (294)
...++.++.....+...+. .+++.|+|||++|.|+....|.|++.+|+++.+..+|++|+.+..+++.++
T Consensus 87 ~I~idqiR~l~~~~~~~~~----------~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHAR----------LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred cCCHHHHHHHHHHHhhccc----------cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 3456677776665554432 245679999999999999999999999999999999999999999999999
Q ss_pred ccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHH
Q 022641 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (294)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~ 258 (294)
|||+.+.|+|++.+++..+|.. ...++++....++..++|++..++.+++
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~-----~~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSR-----EVTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred hccccccCCCCCHHHHHHHHHH-----ccCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999999999999999998852 2346777788889999999999988764
No 80
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.86 E-value=4.4e-20 Score=158.30 Aligned_cols=211 Identities=22% Similarity=0.315 Sum_probs=144.8
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHH-----cCCCC--cEEEECCCCCCHHHHHHHHHHHhcCCCccCCccee
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-----TANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~-----~~~~~--~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (294)
....+|.++|+|...+++..+++.+.++..|+. ..+.+ .++|+||+||||||+++.|++++ +..+++
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel------g~~~~E 140 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL------GYQLIE 140 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh------Cceeee
Confidence 566799999999999999999999999999998 44433 49999999999999999999999 444444
Q ss_pred ecCC-------C------Ccc--hhHHHHHHHHHHhhh--cccCccCCCCCCCCcEEEEEeCCCCCCHH-----HHHHHH
Q 022641 119 LNAS-------D------DRG--INVVRTKIKTFAAVA--VGSGQRRGGYPCPPYKIIILDEADSMTED-----AQNALR 176 (294)
Q Consensus 119 ~~~~-------~------~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lliiDei~~l~~~-----~~~~L~ 176 (294)
-..+ . ... ...--..+..+.... .+.-+..+.....++.+|+|||+...... .++.|.
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~ 220 (634)
T KOG1970|consen 141 WSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLR 220 (634)
T ss_pred ecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHH
Confidence 3311 0 001 111111222232222 22223344455566779999999876432 234444
Q ss_pred HHHHhhcCcceEEEEecCC--------cccchH--hhccccEEEecCCCHHHHHHHHHHHHHHhCCCCC------HHHHH
Q 022641 177 RTMETYSKVTRFFFICNYI--------SRIIEP--LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD------AEALS 240 (294)
Q Consensus 177 ~~l~~~~~~~~ii~~~~~~--------~~~~~~--l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~l~ 240 (294)
.+......+ .|+++|+.. ...... ...|...|.|+|....-+++.|.++|..++...+ ...++
T Consensus 221 ~y~s~g~~P-lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 221 LYVSIGRCP-LIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred HHHhcCCCc-EEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 333333334 445555221 112222 3346669999999999999999999998887666 67789
Q ss_pred HHHhhccCcHHHHHHHHHHHHHH
Q 022641 241 TLSSISQGDLRRAITYLQGAARL 263 (294)
Q Consensus 241 ~l~~~~~G~~r~~~~~l~~~~~~ 263 (294)
.++..++||+|.|++.||+.+..
T Consensus 300 ~i~~~s~GDIRsAInsLQlsssk 322 (634)
T KOG1970|consen 300 LICQGSGGDIRSAINSLQLSSSK 322 (634)
T ss_pred HHHHhcCccHHHHHhHhhhhccc
Confidence 99999999999999999998743
No 81
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.86 E-value=3.9e-20 Score=155.97 Aligned_cols=170 Identities=22% Similarity=0.288 Sum_probs=133.5
Q ss_pred HHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc------------------CCcceeecCC---CCcchhHHHH
Q 022641 75 NTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNAS---DDRGINVVRT 132 (294)
Q Consensus 75 ~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~------------------~~~~~~~~~~---~~~~~~~~~~ 132 (294)
+++..++.++ ++|+||+|+|||++|..+++.+.|.... +..+..+... ....++.++.
T Consensus 14 ~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 14 QLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred HHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 3444566666 8999999999999999999999885321 2233444332 2346677777
Q ss_pred HHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEec
Q 022641 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~ 212 (294)
....+...+. .+++.|+|||++|.++....+.|++.+|+++.++.+|++|+.+..+++.+++||..+.|.
T Consensus 94 l~~~~~~~~~----------~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 94 LVSFVVQTAQ----------LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred HHHHHhhccc----------cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 6655544332 234679999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHH
Q 022641 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (294)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~ 258 (294)
|++.+++..++.... ...+++....++..++|++..++.+++
T Consensus 164 ~~~~~~~~~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 164 LPSNEESLQWLQQAL----PESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred CcCHHHHHHHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 999999999986432 135667777888999999998887654
No 82
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.86 E-value=3.2e-20 Score=163.45 Aligned_cols=209 Identities=17% Similarity=0.106 Sum_probs=150.2
Q ss_pred CCcchhhcccHHHHHHHHHHHHc----------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc-
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLET----------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR- 125 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~----------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~- 125 (294)
+..|+++.|.+.++..+...... ..+..++|+||||||||.+|++++.++ +.+++.++.+...
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~~ 297 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLFG 297 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhcc
Confidence 45688999998888766553211 123459999999999999999999998 7778877765422
Q ss_pred -----chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHHHHhhcCcceE
Q 022641 126 -----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 126 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~------------~~~~~L~~~l~~~~~~~~i 188 (294)
+...++..+...... .+.||+|||+|.+.. .....++..+++....+.+
T Consensus 298 ~~vGese~~l~~~f~~A~~~--------------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 298 GIVGESESRMRQMIRIAEAL--------------SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred cccChHHHHHHHHHHHHHhc--------------CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 222333333322221 235999999997632 1344566777766667778
Q ss_pred EEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHhhccC----cHHHHHHHHHHH
Q 022641 189 FFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSISQG----DLRRAITYLQGA 260 (294)
Q Consensus 189 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~l~~~~~G----~~r~~~~~l~~~ 260 (294)
|.|||.+..+++++.+ ||. .+.++.|+.+++.++++.++.+.+.. .++..+..+++.+.| +++.++......
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~ 443 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYI 443 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 8999999999999986 887 79999999999999999999875543 345567788877544 666665554444
Q ss_pred HHHhCCCCChhhhhhhcccccCCCC
Q 022641 261 ARLFGSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 261 ~~~~~~~it~~~v~~~~~~~~~~~~ 285 (294)
+...+..++.+++..++....+...
T Consensus 444 A~~~~~~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 444 AFYEKREFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred HHHcCCCcCHHHHHHHHHhcCCCcc
Confidence 4444778999999999998887654
No 83
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=5.3e-20 Score=152.72 Aligned_cols=191 Identities=23% Similarity=0.208 Sum_probs=132.7
Q ss_pred hhhcccHHHHHHHHHHHH--------c-------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCcc-CCcceeecCCCC
Q 022641 61 KDVAHQEEVVRVLTNTLE--------T-------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDD 124 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~--------~-------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~-~~~~~~~~~~~~ 124 (294)
.+++|.+.+++.+.++.. . ....+++|+||||||||++|+++++.+...... ...++.++..+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 478899888876665531 0 123359999999999999999999987432221 223555553321
Q ss_pred cchhHH--HHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhhcCcceEEEEec
Q 022641 125 RGINVV--RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 125 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l---------~~~~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
.+.... .......... ..+++|||||++.+ ....++.|+..|+.....+++|++++
T Consensus 103 ~~~~~g~~~~~~~~~l~~-------------a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~ 169 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKK-------------AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGY 169 (287)
T ss_pred HHHHhccchHHHHHHHHH-------------ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 111100 0000111110 12359999999987 35578889999988777777777765
Q ss_pred CCc-----ccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh--------ccCcHHHHHHHHHH
Q 022641 194 YIS-----RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITYLQG 259 (294)
Q Consensus 194 ~~~-----~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~--------~~G~~r~~~~~l~~ 259 (294)
... ...+++.+||. .+.|+|++.+++..++..++++.+..++++....+.+. ..||.|.+.++++.
T Consensus 170 ~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 170 KDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred cHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 321 23589999998 89999999999999999999999999998887766664 34899999999998
Q ss_pred HHHHh
Q 022641 260 AARLF 264 (294)
Q Consensus 260 ~~~~~ 264 (294)
+....
T Consensus 250 ~~~~~ 254 (287)
T CHL00181 250 ARMRQ 254 (287)
T ss_pred HHHHH
Confidence 77554
No 84
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.85 E-value=6.7e-20 Score=158.94 Aligned_cols=209 Identities=21% Similarity=0.248 Sum_probs=142.8
Q ss_pred CCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
...++++.|.+..++.+...+.. ..+.+++|+||||||||++|+++++++ +..++.++++.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~ 200 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSE 200 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHH
Confidence 34678999999999888877632 233469999999999999999999998 56677776554
Q ss_pred Ccc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhh----
Q 022641 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY---- 182 (294)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~---- 182 (294)
... ...++..+..... ..+.+|+|||+|.+. ...+..+.+++...
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~--------------~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELARE--------------KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHh--------------cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 321 1112222221111 123599999999872 33444555555332
Q ss_pred -cCcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHH
Q 022641 183 -SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYL 257 (294)
Q Consensus 183 -~~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l 257 (294)
...+.+|++||.+..+++++++ ||. .|.+++|+.+++.++++.++....+. .+..+..+++.+.| +.+.+..++
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~ 345 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAIC 345 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHH
Confidence 2367789999999999999986 776 79999999999999999887654332 12346667776654 233344444
Q ss_pred HHHHHHh----CCCCChhhhhhhcccccCCCCC
Q 022641 258 QGAARLF----GSSITSKDLISVSGYPTGGSGG 286 (294)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~~~~~~~~ 286 (294)
..++..+ ...|+.+++.+++....+....
T Consensus 346 ~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 346 TEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHhccccc
Confidence 4444443 4579999999999988776543
No 85
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.85 E-value=1.7e-19 Score=150.90 Aligned_cols=178 Identities=21% Similarity=0.286 Sum_probs=140.0
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc------------------CCcceeecC--CCC
Q 022641 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNA--SDD 124 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~------------------~~~~~~~~~--~~~ 124 (294)
+......+.+.+..++.+| ++|+||+|+||+++|..+++.+.|.... +..+..+.+ ...
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 4566778888898888777 7899999999999999999999885421 223333433 223
Q ss_pred cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhc
Q 022641 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~ 204 (294)
.+++.+++....+...+. .+++.|+|||++|.|+....|.|++.+|+++.++.+|++|+.+..+++.++|
T Consensus 87 I~id~iR~l~~~~~~~~~----------~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQ----------QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred CCHHHHHHHHHHHhhccc----------cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 456677766555444332 2346799999999999999999999999999999999999999999999999
Q ss_pred cccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHH
Q 022641 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (294)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~ 258 (294)
||..+.|.|++.+++..+|.... ..++..+..++..++|++..++.++.
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLE 205 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhh
Confidence 99999999999999999986532 23444566778889999988777654
No 86
>PRK09087 hypothetical protein; Validated
Probab=99.85 E-value=4.6e-20 Score=148.07 Aligned_cols=190 Identities=16% Similarity=0.163 Sum_probs=136.7
Q ss_pred cchhhcc---cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHH
Q 022641 59 QVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (294)
Q Consensus 59 ~~~~~~g---~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (294)
+|++++. +..+...+.++. ....+.++|+||+|+|||||++++++.. +..+ ++... .... .+.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~------~~~~--i~~~~-~~~~----~~~ 84 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS------DALL--IHPNE-IGSD----AAN 84 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc------CCEE--ecHHH-cchH----HHH
Confidence 5666663 445555555544 2233459999999999999999998765 2222 22211 1111 111
Q ss_pred HHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcC-cceEEEEecCCc---c-cchHhhccc---c
Q 022641 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK-VTRFFFICNYIS---R-IIEPLASRC---A 207 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~---~-~~~~l~~r~---~ 207 (294)
... .++|+|||++.+.. .+..|+.+++.... ...++++++... . ..+.+++|+ .
T Consensus 85 ~~~-----------------~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl 146 (226)
T PRK09087 85 AAA-----------------EGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT 146 (226)
T ss_pred hhh-----------------cCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCc
Confidence 100 13899999998853 35668888876555 455777776432 2 368899999 5
Q ss_pred EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHH---HHhCCCCChhhhhhhcccc
Q 022641 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA---RLFGSSITSKDLISVSGYP 280 (294)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~---~~~~~~it~~~v~~~~~~~ 280 (294)
.+.+.+|+.+++..++++.++..++.++++++++|++.+.|++|.++..+..+. ...++.||.+.+++++...
T Consensus 147 ~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 147 VVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998666554 3337789999999998765
No 87
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=1.3e-19 Score=150.65 Aligned_cols=191 Identities=21% Similarity=0.186 Sum_probs=134.4
Q ss_pred hhhcccHHHHHHHHHHHH----------cC-----CCCcEEEECCCCCCHHHHHHHHHHHhcCCCcc-CCcceeecCCCC
Q 022641 61 KDVAHQEEVVRVLTNTLE----------TA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDD 124 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~----------~~-----~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~-~~~~~~~~~~~~ 124 (294)
.+++|.+.+++.+..+.. .+ ...+++|+||||||||++|+++++.+...... ..+++.+++++.
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 468888888877655431 11 12369999999999999999999988433221 224565554322
Q ss_pred cchhHH--HHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhhcCcceEEEEec
Q 022641 125 RGINVV--RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 125 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l---------~~~~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
...... ...+...... ...++|||||++.+ +...++.|++.|+......++|++++
T Consensus 102 ~~~~~g~~~~~~~~~~~~-------------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~ 168 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKR-------------AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGY 168 (284)
T ss_pred hHhhcccchHHHHHHHHH-------------ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 110000 0001111110 12359999999987 24567889999998777777777765
Q ss_pred CC-----cccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh--------ccCcHHHHHHHHHH
Q 022641 194 YI-----SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITYLQG 259 (294)
Q Consensus 194 ~~-----~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~--------~~G~~r~~~~~l~~ 259 (294)
.. ..+.+++.+||. .|.|++++.+++..++.+++++.+..+++++++.+.++ +.||.|.+.|+++.
T Consensus 169 ~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 169 KDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred cHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 32 124689999997 89999999999999999999998888999998888775 46999999999998
Q ss_pred HHHHh
Q 022641 260 AARLF 264 (294)
Q Consensus 260 ~~~~~ 264 (294)
+....
T Consensus 249 ~~~~~ 253 (284)
T TIGR02880 249 ARLRQ 253 (284)
T ss_pred HHHHH
Confidence 77554
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.85 E-value=3e-20 Score=173.30 Aligned_cols=223 Identities=19% Similarity=0.210 Sum_probs=166.9
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC----ccCCcceeecC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~ 121 (294)
....|+.++.+|..++.++|+++.+..+.+.+......|++|+||||||||++++++++.+.... ..+..++.++.
T Consensus 167 ~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 167 KYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred HHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 46679999999999999999999999999999998888999999999999999999999974322 22455666654
Q ss_pred CCCc----chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhhcCcceE
Q 022641 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~---------~~~~~~L~~~l~~~~~~~~i 188 (294)
+... ....+...+..+...... ..+.||||||+|.+. .+..+.|+..++. ....+
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~----------~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~ 314 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEK----------EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRC 314 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhc----------cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEE
Confidence 3321 112233333333322111 113599999999884 2356778888764 55678
Q ss_pred EEEecC-----CcccchHhhccccEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHhhccC------cHHHH
Q 022641 189 FFICNY-----ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRA 253 (294)
Q Consensus 189 i~~~~~-----~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~l~~~~~G------~~r~~ 253 (294)
|.+|+. ....++++.+||..+.+++|+.++...+++..... +++.++++++..+++.+.. -|+.+
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 888875 24568899999999999999999999999987754 4578999999999988753 38889
Q ss_pred HHHHHHHHHHh--------CCCCChhhhhhhcccc
Q 022641 254 ITYLQGAARLF--------GSSITSKDLISVSGYP 280 (294)
Q Consensus 254 ~~~l~~~~~~~--------~~~it~~~v~~~~~~~ 280 (294)
+.+++.++... ...++.+++..++...
T Consensus 395 i~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 395 IDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred HHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 99999877533 1238888888887664
No 89
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.85 E-value=4.4e-20 Score=167.15 Aligned_cols=222 Identities=20% Similarity=0.218 Sum_probs=154.5
Q ss_pred hhhcccHHHHHHHHHHHHc----CCCCc-EEEECCCCCCHHHHHHHHHHHhcCC----CccCCcceeecCCCCcchhHHH
Q 022641 61 KDVAHQEEVVRVLTNTLET----ANCPH-MLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~----~~~~~-ill~Gp~G~GKT~la~~la~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
+.+++++..++.|...+.. ....+ ++|+|+||||||++++.+.+++... ......++.++|........+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 5788999988887776643 23334 5699999999999999999887321 1223567888887655444333
Q ss_pred HHHHHHH-hhhcccCcc----------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh---cCcceEEEEecC---
Q 022641 132 TKIKTFA-AVAVGSGQR----------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---SKVTRFFFICNY--- 194 (294)
Q Consensus 132 ~~~~~~~-~~~~~~~~~----------~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~---~~~~~ii~~~~~--- 194 (294)
..+.... ......+.. ..........||||||+|.|....++.|+.+++.. ...+.+|+++|.
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 3322111 111100000 00011123459999999999876677777777642 234567777775
Q ss_pred CcccchHhhcccc--EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHh---hccCcHHHHHHHHHHHHHHh-CCCC
Q 022641 195 ISRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS---ISQGDLRRAITYLQGAARLF-GSSI 268 (294)
Q Consensus 195 ~~~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~---~~~G~~r~~~~~l~~~~~~~-~~~i 268 (294)
+..+.+++.+|+. .+.|+|++.+++.+||..++......+++++++.+++ ...||.|.|+++|..++... +..|
T Consensus 915 perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskV 994 (1164)
T PTZ00112 915 PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKI 994 (1164)
T ss_pred chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCcc
Confidence 3456678888886 5899999999999999999976545589999999998 67899999999999998765 4469
Q ss_pred ChhhhhhhcccccC
Q 022641 269 TSKDLISVSGYPTG 282 (294)
Q Consensus 269 t~~~v~~~~~~~~~ 282 (294)
+.++|.++......
T Consensus 995 T~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 995 VPRDITEATNQLFD 1008 (1164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999988866533
No 90
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.85 E-value=8e-20 Score=163.78 Aligned_cols=206 Identities=21% Similarity=0.182 Sum_probs=142.4
Q ss_pred cCCCcchhhcccHHHHHHHHHHHH------------cCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 55 YRPKQVKDVAHQEEVVRVLTNTLE------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~------------~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
.....|+++.|.+..+..+.+++. ...+.+++|+||||||||++|++++.++ +.+++.++++
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~------~~~~~~i~~~ 122 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGS 122 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCeeeccHH
Confidence 345689999999988877766553 1223469999999999999999999998 6677776654
Q ss_pred CCc------chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhh
Q 022641 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY 182 (294)
Q Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~ 182 (294)
+.. +...++..+...... .+.+|+|||+|.+.. ...+.|+..++..
T Consensus 123 ~~~~~~~g~~~~~l~~~f~~a~~~--------------~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 123 DFVEMFVGVGASRVRDLFEQAKKN--------------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--------------CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 321 222333333332211 235999999998742 2334555555543
Q ss_pred c--CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHH
Q 022641 183 S--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITY 256 (294)
Q Consensus 183 ~--~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~ 256 (294)
. ..+.+|++||.+..+++++.+ ||. .+.+++|+.+++.++++.++...... ++..+..+++.+.| +.+.+.++
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHH
Confidence 3 346688889999999999987 776 79999999999999999888654433 34557788887655 34444455
Q ss_pred HHHHHHHh----CCCCChhhhhhhccccc
Q 022641 257 LQGAARLF----GSSITSKDLISVSGYPT 281 (294)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~~~~~ 281 (294)
++.++..+ ...|+.+++..++....
T Consensus 268 ~~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 268 LNEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 55444332 45699999999888653
No 91
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.85 E-value=2e-19 Score=150.26 Aligned_cols=178 Identities=23% Similarity=0.325 Sum_probs=138.6
Q ss_pred ccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCccC---------------Ccceee--cCCC---
Q 022641 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYK---------------SRVLEL--NASD--- 123 (294)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~~---------------~~~~~~--~~~~--- 123 (294)
-+......+...+..++.++ ++|+||+|+||+++|.++++.+.|..... ..+..+ .+..
T Consensus 8 W~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~ 87 (319)
T PRK08769 8 WQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD 87 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc
Confidence 45677888999999998888 99999999999999999999998864221 122222 1111
Q ss_pred ----CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccc
Q 022641 124 ----DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199 (294)
Q Consensus 124 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~ 199 (294)
...++.+++....+...+ ..+++.|+|||++|.|+....|.|++.+|+++.++.+|++++.+..++
T Consensus 88 k~~~~I~idqIR~l~~~~~~~p----------~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 88 KLRTEIVIEQVREISQKLALTP----------QYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred cccccccHHHHHHHHHHHhhCc----------ccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 122444444444333222 123467999999999999999999999999999999999999999999
Q ss_pred hHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHH
Q 022641 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (294)
Q Consensus 200 ~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~ 258 (294)
+.++|||..+.|.+|+.+++..+|. ..+ ++++....++..++|+|..++..++
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~----~~~--~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLL----AQG--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHH----HcC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999999999999999999999885 233 5666677788999999998887764
No 92
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.84 E-value=1e-19 Score=138.75 Aligned_cols=141 Identities=38% Similarity=0.612 Sum_probs=107.8
Q ss_pred ccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc-----------------CCcceeecCCCC--
Q 022641 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-----------------KSRVLELNASDD-- 124 (294)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-----------------~~~~~~~~~~~~-- 124 (294)
||+..++.|...+..++.++ ++|+||+|+||+++|.++++.++|.... ...+..+.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 78999999999999999888 7999999999999999999999887644 445555555443
Q ss_pred -cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhh
Q 022641 125 -RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (294)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~ 203 (294)
...+.++.....+..... .+.+.++||||+|.|+..+++.|++.||+++..+.+|++|+.+..+.+.++
T Consensus 81 ~i~i~~ir~i~~~~~~~~~----------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPS----------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-T----------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHHh----------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 456666655554433322 245679999999999999999999999999999999999999999999999
Q ss_pred ccccEEEecCCC
Q 022641 204 SRCAKFRFKPLS 215 (294)
Q Consensus 204 ~r~~~i~~~~~~ 215 (294)
+||..+.|.|++
T Consensus 151 SRc~~i~~~~ls 162 (162)
T PF13177_consen 151 SRCQVIRFRPLS 162 (162)
T ss_dssp TTSEEEEE----
T ss_pred hhceEEecCCCC
Confidence 999999999875
No 93
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.84 E-value=4.3e-19 Score=154.06 Aligned_cols=228 Identities=18% Similarity=0.219 Sum_probs=150.3
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHc----CCCCcEEEECCCCCCHHHHHHHHHHHhcCCC---ccCCcceeecCC
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNAS 122 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~---~~~~~~~~~~~~ 122 (294)
.+...|.|. .++|++..++.|..++.. ...++++|+||||||||++++.+++++.... .....++.+++.
T Consensus 7 ~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 7 LLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred hCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 445566674 688999999888888753 3446799999999999999999999874211 111466777776
Q ss_pred CCcchh-HHHHHHHHHHh--hhcc-cCccC---------CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH-----hhc-
Q 022641 123 DDRGIN-VVRTKIKTFAA--VAVG-SGQRR---------GGYPCPPYKIIILDEADSMTEDAQNALRRTME-----TYS- 183 (294)
Q Consensus 123 ~~~~~~-~~~~~~~~~~~--~~~~-~~~~~---------~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~-----~~~- 183 (294)
...+.. .+......+.. .... .+... ......+..+|+|||+|.+.......|..++. ..+
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~ 163 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDN 163 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCC
Confidence 654432 22233332211 0000 00000 00012345699999999995222223333332 222
Q ss_pred CcceEEEEecCCc---ccchHhhcccc--EEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHh---hccCcHHHH
Q 022641 184 KVTRFFFICNYIS---RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSS---ISQGDLRRA 253 (294)
Q Consensus 184 ~~~~ii~~~~~~~---~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~l~~---~~~G~~r~~ 253 (294)
.++.+|+++|.+. .+.+.+.+|+. .+.|+|++.+++.++++..++. ....+++++++.+++ .+.||+|.+
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 4567888888764 46677788874 7999999999999999998863 223478887776555 457999999
Q ss_pred HHHHHHHHHHh----CCCCChhhhhhhcccc
Q 022641 254 ITYLQGAARLF----GSSITSKDLISVSGYP 280 (294)
Q Consensus 254 ~~~l~~~~~~~----~~~it~~~v~~~~~~~ 280 (294)
++++..++..+ ...||.+++..++...
T Consensus 244 l~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 244 IDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 99999888665 3469999999877654
No 94
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=5.7e-19 Score=147.36 Aligned_cols=175 Identities=16% Similarity=0.284 Sum_probs=136.9
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc-----------------CCcceeecCC---CC
Q 022641 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-----------------KSRVLELNAS---DD 124 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-----------------~~~~~~~~~~---~~ 124 (294)
+....+.+...+..++.++ ++|+||.|+||+++|..+++.+.|.... +..+..+... ..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 4566778888888888877 8999999999999999999999886421 2234444332 22
Q ss_pred cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhc
Q 022641 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~ 204 (294)
..++.++.......... ..+.+.|+|||++|.++....|.|++.+|+++.++.+|++|+.+..+++.++|
T Consensus 88 I~vdqiR~l~~~~~~~~----------~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 88 ITVEQIRQCNRLAQESS----------QLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CCHHHHHHHHHHHhhCc----------ccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 45566665544333222 22346799999999999999999999999999999999999999999999999
Q ss_pred cccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHH
Q 022641 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (294)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~ 258 (294)
||..+.|++|+.+++..++. .++.. ....++..++|+|..++.+++
T Consensus 158 RCq~~~~~~~~~~~~~~~L~----~~~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLK----GQGIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred cceeEeCCCCCHHHHHHHHH----HcCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 99999999999999999884 34443 234667889999998888764
No 95
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.83 E-value=4.2e-19 Score=153.28 Aligned_cols=206 Identities=21% Similarity=0.225 Sum_probs=140.2
Q ss_pred CCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
...|.++.|.+..+..+.+.+.. ..+.+++|+||||||||++|+++++++ ...++.+.++.
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~ 214 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSE 214 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHH
Confidence 45788999999999888877632 123469999999999999999999988 55666654432
Q ss_pred Cc------chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHH---HHhh-
Q 022641 124 DR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRT---METY- 182 (294)
Q Consensus 124 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~---l~~~- 182 (294)
.. +...++..+.... ...+.+|+|||+|.+. ...+..+..+ ++..
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~--------------~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLAR--------------ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHH--------------hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 21 1111222222111 1234699999999762 1223334444 4332
Q ss_pred -cCcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHH
Q 022641 183 -SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYL 257 (294)
Q Consensus 183 -~~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l 257 (294)
...+.+|++||.+..+++++++ |+. .|.|++|+.+++..+++.++...++. .+-.+..++..+.| +...+..++
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~ 359 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAIC 359 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHH
Confidence 2456789999999999999887 776 79999999999999999888765543 22346677777644 455555666
Q ss_pred HHHHHHh----CCCCChhhhhhhcccccCC
Q 022641 258 QGAARLF----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~~~~~ 283 (294)
+.++..+ ...|+.+|+.+++......
T Consensus 360 ~eA~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 360 QEAGMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 6665544 3569999999998876443
No 96
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.83 E-value=6.3e-19 Score=154.56 Aligned_cols=231 Identities=22% Similarity=0.266 Sum_probs=155.2
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHc----CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~----~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (294)
....++...+.| +.++|++..++.|...+.. ...++++|+||||+|||++++.+++++.... ....++.+++
T Consensus 18 ~~~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~ 93 (394)
T PRK00411 18 KDEEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINC 93 (394)
T ss_pred CChhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEEC
Confidence 334455555555 5678999888888777633 3446799999999999999999999874322 2356677777
Q ss_pred CCCcchhH-HHHHHHHHHhhhc-ccCccCC---------CCCCCCcEEEEEeCCCCCC----HHHHHHHHHHHHhhcC-c
Q 022641 122 SDDRGINV-VRTKIKTFAAVAV-GSGQRRG---------GYPCPPYKIIILDEADSMT----EDAQNALRRTMETYSK-V 185 (294)
Q Consensus 122 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~lliiDei~~l~----~~~~~~L~~~l~~~~~-~ 185 (294)
....+... +......+..... ..+.... .....++.+|+|||+|.+. ......|+..++.... +
T Consensus 94 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~ 173 (394)
T PRK00411 94 QIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGAR 173 (394)
T ss_pred CcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCe
Confidence 65444322 2222222211000 0000000 0012345699999999985 3344555555544333 5
Q ss_pred ceEEEEecCCc---ccchHhhcccc--EEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHhhc---cCcHHHHHH
Q 022641 186 TRFFFICNYIS---RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSIS---QGDLRRAIT 255 (294)
Q Consensus 186 ~~ii~~~~~~~---~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~l~~~~---~G~~r~~~~ 255 (294)
..+|+++|... .+.+.+.+++. .+.|+|++.+++.++++..+... ...+++++++.+++.+ .||+|.+++
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ 253 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAID 253 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHH
Confidence 66888887653 35667777774 78999999999999999988643 2358999999999887 899999999
Q ss_pred HHHHHHHHh----CCCCChhhhhhhcccc
Q 022641 256 YLQGAARLF----GSSITSKDLISVSGYP 280 (294)
Q Consensus 256 ~l~~~~~~~----~~~it~~~v~~~~~~~ 280 (294)
++..++..+ ...|+.+++..++...
T Consensus 254 ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 254 LLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 999877665 3569999999888765
No 97
>CHL00176 ftsH cell division protein; Validated
Probab=99.83 E-value=5.7e-19 Score=160.32 Aligned_cols=203 Identities=21% Similarity=0.203 Sum_probs=141.7
Q ss_pred CCcchhhcccHHHHHHHHHHHH---c---------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLE---T---------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
...|+++.|.++.+..+...+. . ..+.+++|+||||||||++|++++.++ +.+++.+++++.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~------~~p~i~is~s~f 252 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------EVPFFSISGSEF 252 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeeeccHHHH
Confidence 3578899999888877766642 1 123459999999999999999999998 667777766542
Q ss_pred cc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH-----------H---HHHHHHHHHHhhc-
Q 022641 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------D---AQNALRRTMETYS- 183 (294)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~-----------~---~~~~L~~~l~~~~- 183 (294)
.. ...++..+..... ..+.+|+|||+|.+.. . ..+.|+..++...
T Consensus 253 ~~~~~g~~~~~vr~lF~~A~~--------------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 253 VEMFVGVGAARVRDLFKKAKE--------------NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HHHhhhhhHHHHHHHHHHHhc--------------CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 21 1122222222111 2245999999998731 2 2334444444322
Q ss_pred -CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHHH
Q 022641 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQ 258 (294)
Q Consensus 184 -~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l~ 258 (294)
....+|++||.+..+++++++ ||. .+.+++|+.+++..+++.+++.... .++..+..+++.+.| +.+.+.+++.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 356788888999889999986 665 7999999999999999999876332 345678889998877 6666666666
Q ss_pred HHHHHh----CCCCChhhhhhhcccc
Q 022641 259 GAARLF----GSSITSKDLISVSGYP 280 (294)
Q Consensus 259 ~~~~~~----~~~it~~~v~~~~~~~ 280 (294)
.++..+ ...||.+++..++...
T Consensus 398 eAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 398 EAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 655433 4569999999998765
No 98
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.6e-19 Score=154.34 Aligned_cols=180 Identities=21% Similarity=0.230 Sum_probs=137.9
Q ss_pred cchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC---
Q 022641 59 QVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD--- 123 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~--- 123 (294)
.|.++-|.+..+.+|...+.. ..++.++|+||||||||.||+++|.++ +.+++.+++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel------~vPf~~isApeivS 261 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL------GVPFLSISAPEIVS 261 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc------CCceEeecchhhhc
Confidence 488999999999888877632 122359999999999999999999999 88999887654
Q ss_pred ---CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH-----------HHHHHHHHHHhhc------
Q 022641 124 ---DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-----------AQNALRRTMETYS------ 183 (294)
Q Consensus 124 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~-----------~~~~L~~~l~~~~------ 183 (294)
+.+...+++.+....... +.++||||||.+.+. ....|+..|++..
T Consensus 262 GvSGESEkkiRelF~~A~~~a--------------PcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNA--------------PCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ccCcccHHHHHHHHHHHhccC--------------CeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 334556666666654433 359999999998642 3456777777543
Q ss_pred CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHH
Q 022641 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (294)
Q Consensus 184 ~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~ 259 (294)
..+.+|.+||.+..++++|++ ||. .|.+.-|+...+.+||+.+|+.-.+.. +=.+..|++++.|-+..-+..|-.
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHH
Confidence 456788889999999999987 787 799999999999999999997543332 233778899999977776655443
No 99
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.82 E-value=6.2e-19 Score=165.68 Aligned_cols=208 Identities=18% Similarity=0.214 Sum_probs=154.6
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCC----CccCCcceeecC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNA 121 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~----~~~~~~~~~~~~ 121 (294)
....++.++.+|..++.++|+++.++.+...+.....+|++|+||||||||++++.+++.+... ...+..++.++.
T Consensus 172 ~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 172 QYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred HHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 5667899999999999999999999999999999988999999999999999999999987422 123344555544
Q ss_pred CCCc----chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhhcCcceEE
Q 022641 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFF 189 (294)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------~~~~~L~~~l~~~~~~~~ii 189 (294)
+... ....+...+..+....... ..+.||||||+|.+.. +..+.|+..++. ....+|
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~---------~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~I 320 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKAS---------PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTI 320 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhc---------CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEE
Confidence 3321 2222333333333322110 1245999999999853 233467777765 566688
Q ss_pred EEecC-----CcccchHhhccccEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHhhccC------cHHHHH
Q 022641 190 FICNY-----ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAI 254 (294)
Q Consensus 190 ~~~~~-----~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~l~~~~~G------~~r~~~ 254 (294)
.+|+. ....+++|.+||..|.+++|+.++...+|+.+... +++.++++++..+++++.+ -|..++
T Consensus 321 gaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAI 400 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAV 400 (852)
T ss_pred EecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHH
Confidence 88764 34578999999999999999999999997666543 5688999999999998764 478899
Q ss_pred HHHHHHHHHh
Q 022641 255 TYLQGAARLF 264 (294)
Q Consensus 255 ~~l~~~~~~~ 264 (294)
.++..++...
T Consensus 401 dlldea~a~~ 410 (852)
T TIGR03345 401 SLLDTACARV 410 (852)
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 100
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.82 E-value=9.4e-19 Score=153.91 Aligned_cols=217 Identities=12% Similarity=0.158 Sum_probs=146.3
Q ss_pred CCCcchhhc-cc--HHHHHHHHHHHHcCC--CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHH
Q 022641 56 RPKQVKDVA-HQ--EEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130 (294)
Q Consensus 56 ~~~~~~~~~-g~--~~~~~~l~~~l~~~~--~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (294)
.+.+|+.++ |. ..+......+....+ ...++|+|++|+|||||++++++.+.... .+..++.+++.+. .
T Consensus 110 ~~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~~~f-----~ 183 (450)
T PRK14087 110 NENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSGDEF-----A 183 (450)
T ss_pred cccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHH-----H
Confidence 346777666 33 334444455544322 23499999999999999999999763211 1234444443321 1
Q ss_pred HHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhhcCc-ceEEEEecCCc----ccchHhh
Q 022641 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKV-TRFFFICNYIS----RIIEPLA 203 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--~~~~~~L~~~l~~~~~~-~~ii~~~~~~~----~~~~~l~ 203 (294)
......+.... .............++|+|||++.+. ...++.|+.+++..... ..+|++++.+. .+.+++.
T Consensus 184 ~~~~~~l~~~~--~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~ 261 (450)
T PRK14087 184 RKAVDILQKTH--KEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLI 261 (450)
T ss_pred HHHHHHHHHhh--hHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHH
Confidence 11111110000 0000000011234699999999986 55678888888765543 35777776543 3568899
Q ss_pred cccc---EEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh--C---CCCChhhh
Q 022641 204 SRCA---KFRFKPLSEEVMSSRVLHICNEEGL--NLDAEALSTLSSISQGDLRRAITYLQGAARLF--G---SSITSKDL 273 (294)
Q Consensus 204 ~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~--~---~~it~~~v 273 (294)
+|+. .+.+.||+.+++..++++.++..|+ .++++++++|++.++||+|.+.+++..+...+ . ..||.+.+
T Consensus 262 SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v 341 (450)
T PRK14087 262 TRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIV 341 (450)
T ss_pred HHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHH
Confidence 9986 8999999999999999999998875 69999999999999999999999998775444 2 57999999
Q ss_pred hhhcccc
Q 022641 274 ISVSGYP 280 (294)
Q Consensus 274 ~~~~~~~ 280 (294)
++++...
T Consensus 342 ~~~l~~~ 348 (450)
T PRK14087 342 SDLFRDI 348 (450)
T ss_pred HHHHhhc
Confidence 9998764
No 101
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.6e-19 Score=151.50 Aligned_cols=206 Identities=21% Similarity=0.204 Sum_probs=147.5
Q ss_pred hhhcCCCcchhhcccHHHHHHHHHHHH---c--------CCC-CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee
Q 022641 52 VEKYRPKQVKDVAHQEEVVRVLTNTLE---T--------ANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (294)
Q Consensus 52 ~~~~~~~~~~~~~g~~~~~~~l~~~l~---~--------~~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (294)
.+......|+++.|-++++.+|.+.+. . |+. ..++|+||||||||.||+++|-++ +.+|+..
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA------~VPFF~~ 368 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA------GVPFFYA 368 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc------CCCeEec
Confidence 344455679999999998887766653 2 222 349999999999999999999999 7888877
Q ss_pred cCCC------CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhh
Q 022641 120 NASD------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETY 182 (294)
Q Consensus 120 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~-----------~~~~~L~~~l~~~ 182 (294)
.++. ..+...+++++....... ++||||||+|.+.. ...+.|+--|+.+
T Consensus 369 sGSEFdEm~VGvGArRVRdLF~aAk~~A--------------PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF 434 (752)
T KOG0734|consen 369 SGSEFDEMFVGVGARRVRDLFAAAKARA--------------PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF 434 (752)
T ss_pred cccchhhhhhcccHHHHHHHHHHHHhcC--------------CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc
Confidence 7664 234455666665544433 35999999998731 2456666666665
Q ss_pred cC--cceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHhhccC-cHHHHHH
Q 022641 183 SK--VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAIT 255 (294)
Q Consensus 183 ~~--~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~l~~~~~G-~~r~~~~ 255 (294)
.. .+.+|.+||.+..++++|.+ ||. .|.++.|+..-+.+||..++++ +.++++ .+..|++-+.| +--.+-|
T Consensus 435 ~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaN 512 (752)
T KOG0734|consen 435 KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLAN 512 (752)
T ss_pred CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHH
Confidence 54 55667778999999999987 887 7899999999999999999864 545533 36667777655 3344455
Q ss_pred HHHHHHHHh----CCCCChhhhhhhccc
Q 022641 256 YLQGAARLF----GSSITSKDLISVSGY 279 (294)
Q Consensus 256 ~l~~~~~~~----~~~it~~~v~~~~~~ 279 (294)
+...++..+ .+.+|+.+++.+=..
T Consensus 513 lVNqAAlkAa~dga~~VtM~~LE~akDr 540 (752)
T KOG0734|consen 513 LVNQAALKAAVDGAEMVTMKHLEFAKDR 540 (752)
T ss_pred HHHHHHHHHHhcCcccccHHHHhhhhhh
Confidence 666666555 566999888765443
No 102
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.82 E-value=8.6e-19 Score=152.27 Aligned_cols=208 Identities=19% Similarity=0.247 Sum_probs=138.8
Q ss_pred hhhcCCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCccee
Q 022641 52 VEKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (294)
Q Consensus 52 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (294)
.++.-+..|.++.|.+..++.+.+++.. ..+.+++|+||||||||++|+++++++ ...++.
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el------~~~fi~ 247 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET------SATFLR 247 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCCEEE
Confidence 3445557889999999999988887742 123459999999999999999999998 556666
Q ss_pred ecCCCCcc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHH--
Q 022641 119 LNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTM-- 179 (294)
Q Consensus 119 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l-- 179 (294)
+..+.... ...++..+..... ..+.+|+|||+|.+. ...+..++.++
T Consensus 248 V~~seL~~k~~Ge~~~~vr~lF~~A~~--------------~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~ 313 (438)
T PTZ00361 248 VVGSELIQKYLGDGPKLVRELFRVAEE--------------NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQ 313 (438)
T ss_pred EecchhhhhhcchHHHHHHHHHHHHHh--------------CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHH
Confidence 66554322 1112222221111 123599999998763 12233344444
Q ss_pred -Hhh--cCcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhc----cCc
Q 022641 180 -ETY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS----QGD 249 (294)
Q Consensus 180 -~~~--~~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~----~G~ 249 (294)
+.. ...+.+|++||....+++++.+ |+. .|.|++|+.+++.++++.++....+. ++-.+..++..+ +++
T Consensus 314 Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAd 392 (438)
T PTZ00361 314 LDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGAD 392 (438)
T ss_pred HhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHH
Confidence 332 3467789999999999999875 776 89999999999999999887654432 122355555444 445
Q ss_pred HHHHHHHHHHHHHHh----CCCCChhhhhhhcccccCC
Q 022641 250 LRRAITYLQGAARLF----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 250 ~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~~ 283 (294)
++.+ +..|+..+ ...|+.+++..+...+...
T Consensus 393 I~~i---~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 393 IKAI---CTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HHHH---HHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 5544 44444443 4579999999998886443
No 103
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.81 E-value=4.6e-18 Score=138.90 Aligned_cols=125 Identities=20% Similarity=0.235 Sum_probs=107.3
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC------------CcccchHhhccccEEEecCCCHHHHHHHH
Q 022641 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY------------ISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (294)
Q Consensus 156 ~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~------------~~~~~~~l~~r~~~i~~~~~~~~~~~~~l 223 (294)
+++|||||+|.|+-.+...|-+.+++-- ...+|++||. |+.++..|++|..+|...|++.+++++++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 5699999999999999999999998733 3446777763 56789999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHhhc-cCcHHHHHHHHHHHHHHh----CCCCChhhhhhhccccc
Q 022641 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVSGYPT 281 (294)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~ 281 (294)
+..++.+++.++++++++|+... .-++|.++++|.-+...+ +..+..+||..+-..+.
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFL 433 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHh
Confidence 99999999999999999999985 568999999999666555 55799999988766543
No 104
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.81 E-value=1.3e-18 Score=152.47 Aligned_cols=211 Identities=14% Similarity=0.156 Sum_probs=144.5
Q ss_pred Ccchhhc-cc--HHHHHHHHHHHHc-----CC-CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchh
Q 022641 58 KQVKDVA-HQ--EEVVRVLTNTLET-----AN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (294)
Q Consensus 58 ~~~~~~~-g~--~~~~~~l~~~l~~-----~~-~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (294)
.+|+.++ |. ..+...+..+... +. ...++|+||+|+|||||++++++++... +..++.++....
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f---- 180 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELF---- 180 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHH----
Confidence 3566665 43 3333455555432 11 2349999999999999999999998432 344444443221
Q ss_pred HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhhc-CcceEEEEecCC----cccchH
Q 022641 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI----SRIIEP 201 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--~~~~~L~~~l~~~~-~~~~ii~~~~~~----~~~~~~ 201 (294)
.......+... ............++|+|||++.+.. ..++.|+..++... ....+|++++.+ ..+.++
T Consensus 181 -~~~~~~~l~~~----~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~r 255 (445)
T PRK12422 181 -TEHLVSAIRSG----EMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEER 255 (445)
T ss_pred -HHHHHHHHhcc----hHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHH
Confidence 00111111000 0000000123456999999999853 45677777776543 345677888654 246789
Q ss_pred hhcccc---EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHH---HHh---CCCCChhh
Q 022641 202 LASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA---RLF---GSSITSKD 272 (294)
Q Consensus 202 l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~---~~~---~~~it~~~ 272 (294)
+.+||. .+.+.||+.+++..++++.+...++.++++++++|+....||+|.+.+.+..++ .+. +..||.+.
T Consensus 256 L~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~ 335 (445)
T PRK12422 256 LISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDD 335 (445)
T ss_pred HHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHH
Confidence 999994 899999999999999999999999999999999999999999999999999774 332 56799999
Q ss_pred hhhhcccc
Q 022641 273 LISVSGYP 280 (294)
Q Consensus 273 v~~~~~~~ 280 (294)
+++++...
T Consensus 336 ~~~~l~~~ 343 (445)
T PRK12422 336 IKALLHDV 343 (445)
T ss_pred HHHHHHHh
Confidence 99998764
No 105
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.8e-19 Score=146.61 Aligned_cols=203 Identities=22% Similarity=0.239 Sum_probs=138.6
Q ss_pred CcchhhcccHHHHHHHHHHHH---------cCCC---CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 58 KQVKDVAHQEEVVRVLTNTLE---------TANC---PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~---------~~~~---~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
..|+++.|..++++-|.+++- .+.. ..++++||||||||.||++++.+. +..|+-++.+...
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstlt 282 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLT 282 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhh
Confidence 467899999999988888752 2222 349999999999999999999998 7788888776654
Q ss_pred chh------HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC------------HHHHHHHHHHHHhhcC---
Q 022641 126 GIN------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQNALRRTMETYSK--- 184 (294)
Q Consensus 126 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~------------~~~~~~L~~~l~~~~~--- 184 (294)
++. .++-++....... +..|||||||.|. ...-..|+..|+....
T Consensus 283 SKwRGeSEKlvRlLFemARfyA--------------PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e 348 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYA--------------PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE 348 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhC--------------CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc
Confidence 432 2222222222222 2499999999883 2355677777774331
Q ss_pred --c-ceEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHhhccC----cHHHHHH
Q 022641 185 --V-TRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQG----DLRRAIT 255 (294)
Q Consensus 185 --~-~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~l~~~~~G----~~r~~~~ 255 (294)
. +.|+.+||.++.++.+|++|+. .|.++-|+.+.+..+++..+.. +.. ++-.++.|++.+.| ||+.++
T Consensus 349 ~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~--~~~~~~~~~~~lae~~eGySGaDI~nvC- 425 (491)
T KOG0738|consen 349 NSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS--VELDDPVNLEDLAERSEGYSGADITNVC- 425 (491)
T ss_pred cceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc--ccCCCCccHHHHHHHhcCCChHHHHHHH-
Confidence 2 3355567999999999999999 7999888888888888766643 333 33346666666544 555444
Q ss_pred HHHHHHHHh---------------------CCCCChhhhhhhcccccCCCC
Q 022641 256 YLQGAARLF---------------------GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 256 ~l~~~~~~~---------------------~~~it~~~v~~~~~~~~~~~~ 285 (294)
..++... ...++.++++.++..+.+...
T Consensus 426 --reAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 426 --REASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred --HHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 3333222 123788888888888877765
No 106
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.3e-18 Score=150.94 Aligned_cols=206 Identities=18% Similarity=0.145 Sum_probs=149.4
Q ss_pred cchhhcccHHHHHHHHHHHHcC-------------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 59 QVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
+|+++-+.+++..+|..++... .+..++|+||||||||.||+++|++. +.+|+.+.+....
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa------g~NFisVKGPELl 582 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA------GANFISVKGPELL 582 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc------cCceEeecCHHHH
Confidence 6778888888888877666432 23459999999999999999999999 8899988877654
Q ss_pred chh------HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhhc--Ccc
Q 022641 126 GIN------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS--KVT 186 (294)
Q Consensus 126 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~~--~~~ 186 (294)
+.+ .++..++..... .+.|||+||+|.|. ....+.|+.-|+... ..+
T Consensus 583 NkYVGESErAVR~vFqRAR~s--------------aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV 648 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARAS--------------APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGV 648 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcC--------------CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccce
Confidence 433 344444443333 24699999999984 346788888887653 355
Q ss_pred eEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHhhc------cCcHHHHHHH
Q 022641 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSIS------QGDLRRAITY 256 (294)
Q Consensus 187 ~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~l~~~~------~G~~r~~~~~ 256 (294)
.+|.+||.+..+++++++ |+. .+.+.+|+.++..+||+.+.+..+..+++++ ++.|+..+ +.|+-.++.-
T Consensus 649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 678889999999999987 777 7889999999999999999987777776655 77777653 3455554443
Q ss_pred HHHHHHHh-------C----------CCCChhhhhhhcccccCCC
Q 022641 257 LQGAARLF-------G----------SSITSKDLISVSGYPTGGS 284 (294)
Q Consensus 257 l~~~~~~~-------~----------~~it~~~v~~~~~~~~~~~ 284 (294)
...++.-. + ..+|..|+.+++....+..
T Consensus 729 Asi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 729 ASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 33333221 0 1256678888888777664
No 107
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.81 E-value=1.5e-18 Score=154.61 Aligned_cols=213 Identities=15% Similarity=0.097 Sum_probs=145.3
Q ss_pred Ccchhhc-cc--HHHHHHHHHHHHcC-CC-CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHH
Q 022641 58 KQVKDVA-HQ--EEVVRVLTNTLETA-NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (294)
Q Consensus 58 ~~~~~~~-g~--~~~~~~l~~~l~~~-~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (294)
.+|++++ |. ..+...+..+.... .. ..++|+|++|+|||||++++++.+... ..+..+++++..+... .
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yitaeef~~-----e 358 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSSEEFTN-----E 358 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHHH-----H
Confidence 4667665 33 22333444444432 22 239999999999999999999987321 1123444444332111 1
Q ss_pred HHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhhcC-cceEEEEecCCc----ccchHhhcc
Q 022641 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYIS----RIIEPLASR 205 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--~~~~~L~~~l~~~~~-~~~ii~~~~~~~----~~~~~l~~r 205 (294)
....+...... .......+.++|+|||++.+.. ..++.|+.+++.... ...+|++++... .+.+.|.+|
T Consensus 359 l~~al~~~~~~----~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SR 434 (617)
T PRK14086 359 FINSIRDGKGD----SFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNR 434 (617)
T ss_pred HHHHHHhccHH----HHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhh
Confidence 11110000000 0000112346999999999853 346778888887665 355778887642 467889999
Q ss_pred cc---EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhhhccc
Q 022641 206 CA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGY 279 (294)
Q Consensus 206 ~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~~ 279 (294)
+. .+.+.+|+.+.+..+|++.+...++.++++++++|++...+|+|.+...|..+..++ +..||.+.++.++..
T Consensus 435 f~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~ 514 (617)
T PRK14086 435 FEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRD 514 (617)
T ss_pred hhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 86 799999999999999999999999999999999999999999999998888766554 667999888888875
Q ss_pred c
Q 022641 280 P 280 (294)
Q Consensus 280 ~ 280 (294)
.
T Consensus 515 ~ 515 (617)
T PRK14086 515 L 515 (617)
T ss_pred h
Confidence 4
No 108
>PRK06526 transposase; Provisional
Probab=99.81 E-value=2e-20 Score=152.22 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=134.5
Q ss_pred CCcccccccccccCCCCCcccCCCC--cccCCCCchHHHHhhccccccCCchhhhhcCCCcchhhccc-HHHHHHHHHHH
Q 022641 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ-EEVVRVLTNTL 77 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~l~~~l 77 (294)
|+++|++++..+...++++.+++.. +.|...|.++...++++ .+.+|+.+.+...++....+. +..+..+...-
T Consensus 17 ~~~~~~~~~~~a~~~~~~~~e~l~~ll~~E~~~R~~~~~~~~lk---~a~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~ 93 (254)
T PRK06526 17 LAGAVERLAERARAESWSHEEFLAACLQREVAARESHGGEGRIR---AARFPARKSLEEFDFDHQRSLKRDTIAHLGTLD 93 (254)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCChhhccCccCCCcchHHHHHHhcCc
Confidence 4577888899999999999999887 66777888888888877 788899888888888776653 44555554433
Q ss_pred HcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcE
Q 022641 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (294)
Q Consensus 78 ~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
+....++++|+||||||||+++.+++.++.... ..+..... ...+..+.................+.+
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t~---------~~l~~~l~~~~~~~~~~~~l~~l~~~d 161 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFATA---------AQWVARLAAAHHAGRLQAELVKLGRYP 161 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHCC---CchhhhhH---------HHHHHHHHHHHhcCcHHHHHHHhccCC
Confidence 334556899999999999999999999884221 11111111 111111111100000000001123457
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHHHhhcCcceEEEEecCCcc--------------cchHhhccccEEEecCCCHH
Q 022641 158 IIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYISR--------------IIEPLASRCAKFRFKPLSEE 217 (294)
Q Consensus 158 lliiDei~~l~--~~~~~~L~~~l~~~~~~~~ii~~~~~~~~--------------~~~~l~~r~~~i~~~~~~~~ 217 (294)
+|||||++.++ ....+.|+++++..+....+|++||.+.. +.+++.+.+..+.|...+..
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R 237 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYR 237 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcc
Confidence 99999999875 56677899999887777789999987643 23455566678888876644
No 109
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.81 E-value=8.4e-19 Score=153.77 Aligned_cols=212 Identities=15% Similarity=0.151 Sum_probs=140.9
Q ss_pred cchhhc-ccH--HHHHHHHHHHHcCC--CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH
Q 022641 59 QVKDVA-HQE--EVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (294)
Q Consensus 59 ~~~~~~-g~~--~~~~~l~~~l~~~~--~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (294)
+|++++ |.. .+...+..+..... ...++|+||+|+|||||++++++++... ..+..++.+++.+.. ...
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~~~~~-----~~~ 181 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSSEKFT-----NDF 181 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEHHHHH-----HHH
Confidence 455543 433 23444555544432 2348999999999999999999998432 113445555433211 111
Q ss_pred HHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhhcC-cceEEEEecCCc----ccchHhhccc
Q 022641 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYIS----RIIEPLASRC 206 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--~~~~~L~~~l~~~~~-~~~ii~~~~~~~----~~~~~l~~r~ 206 (294)
...+... ....-.......++|+|||+|.+.. ..++.|+..++.... ...+|++++... .+.+++.+|+
T Consensus 182 ~~~~~~~----~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl 257 (405)
T TIGR00362 182 VNALRNN----KMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRF 257 (405)
T ss_pred HHHHHcC----CHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhc
Confidence 1111000 0000000011235999999998853 356677777776543 345777776432 3567889998
Q ss_pred c---EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhhhcccc
Q 022641 207 A---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGYP 280 (294)
Q Consensus 207 ~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~~~ 280 (294)
. .+.+.+|+.+++..+++..++..++.++++++++|++.+.||+|.+...+..+..++ +..||.+.+.+++...
T Consensus 258 ~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 258 EWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 5 799999999999999999999999999999999999999999999777776655444 6779999998888764
No 110
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.81 E-value=1.1e-18 Score=154.74 Aligned_cols=207 Identities=15% Similarity=0.190 Sum_probs=143.8
Q ss_pred cchhhc-c--cHHHHHHHHHHHHcCC--CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH
Q 022641 59 QVKDVA-H--QEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (294)
Q Consensus 59 ~~~~~~-g--~~~~~~~l~~~l~~~~--~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (294)
+|++++ | +..+...+..+..... ...++|+||+|+|||||++++++++.... .+..++.+++.+... .+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~~~~~--~~~~~ 196 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSEKFTN--DFVNA 196 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHH--HHHHH
Confidence 455544 3 4445556666655432 23499999999999999999999984321 123444444432211 11111
Q ss_pred HH-----HHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhhcCc-ceEEEEecCCc----ccchH
Q 022641 134 IK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSKV-TRFFFICNYIS----RIIEP 201 (294)
Q Consensus 134 ~~-----~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--~~~~~L~~~l~~~~~~-~~ii~~~~~~~----~~~~~ 201 (294)
+. .+.. .....++|+|||+|.+.. ..++.|+.+++..... ..++++++.+. .+.++
T Consensus 197 ~~~~~~~~~~~------------~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 197 LRNNTMEEFKE------------KYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHcCcHHHHHH------------HHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 10 1110 011245999999999853 3466777777665433 34677776542 25678
Q ss_pred hhcccc---EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhh
Q 022641 202 LASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLIS 275 (294)
Q Consensus 202 l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~ 275 (294)
+.+|+. .+.+.+|+.+++..++++.+...++.++++++++|++.+.||+|.+...+..+..++ +..||.+.+++
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~ 344 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKE 344 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 999995 799999999999999999999989999999999999999999999888777666544 67799999999
Q ss_pred hcccc
Q 022641 276 VSGYP 280 (294)
Q Consensus 276 ~~~~~ 280 (294)
++...
T Consensus 345 ~l~~~ 349 (450)
T PRK00149 345 ALKDL 349 (450)
T ss_pred HHHHh
Confidence 98865
No 111
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6e-19 Score=155.99 Aligned_cols=252 Identities=22% Similarity=0.276 Sum_probs=179.9
Q ss_pred cccCCCCchHHHHhhccccccCCchhhhhcCCC-cc--------hhhcccHHHHHHHHHHHHc------CCCCcEEEECC
Q 022641 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPK-QV--------KDVAHQEEVVRVLTNTLET------ANCPHMLFYGP 90 (294)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~g~~~~~~~l~~~l~~------~~~~~ill~Gp 90 (294)
..-++.+++..+-|++-.+ .-..||.++-... ++ .+-.|.+++++++.+.+.. -+.+.+||+||
T Consensus 280 ~~m~~~SaE~~ViRnYlDw-ll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGP 358 (782)
T COG0466 280 ETMSPMSAEATVIRNYLDW-LLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGP 358 (782)
T ss_pred hcCCCCCchHHHHHHHHHH-HHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECC
Confidence 3456777788888887766 4567897654432 11 2445888888888887743 34467999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH
Q 022641 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170 (294)
Q Consensus 91 ~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~ 170 (294)
||+|||+|++.+|+.+ +..|+.++.+..+....++.--..+.....+...+........+.+++|||+|.++.+
T Consensus 359 PGVGKTSLgkSIA~al------~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss 432 (782)
T COG0466 359 PGVGKTSLGKSIAKAL------GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSS 432 (782)
T ss_pred CCCCchhHHHHHHHHh------CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCC
Confidence 9999999999999999 8899999988888877777655555554443332222223345569999999999643
Q ss_pred ----HHHHHHHHHHh-------------hc--CcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHH----
Q 022641 171 ----AQNALRRTMET-------------YS--KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC---- 227 (294)
Q Consensus 171 ----~~~~L~~~l~~-------------~~--~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~---- 227 (294)
-...|+.+++- .+ +.+.||+|+|....++.+|++|+.+|++..++.+|-.++.++++
T Consensus 433 ~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~ 512 (782)
T COG0466 433 FRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQ 512 (782)
T ss_pred CCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHH
Confidence 34567777641 11 35568888899999999999999999999999999999988865
Q ss_pred -HHhC-----CCCCHHHHHHHHhhc--cCcHHHHHHHHHHHHHHh---------CC--CCChhhhhhhcccccCCC
Q 022641 228 -NEEG-----LNLDAEALSTLSSIS--QGDLRRAITYLQGAARLF---------GS--SITSKDLISVSGYPTGGS 284 (294)
Q Consensus 228 -~~~~-----~~~~~~~l~~l~~~~--~G~~r~~~~~l~~~~~~~---------~~--~it~~~v~~~~~~~~~~~ 284 (294)
+.+| +.++++++..|++.. ...+|.+-..+...++-. .. .|+..++.+.++......
T Consensus 513 ~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~ 588 (782)
T COG0466 513 LKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFRY 588 (782)
T ss_pred HHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcccCc
Confidence 3444 458999999988764 233666555555444332 11 478888999998866553
No 112
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.80 E-value=4.6e-18 Score=146.99 Aligned_cols=206 Identities=19% Similarity=0.202 Sum_probs=132.7
Q ss_pred CCcchhhcccHHHHHHHHHHHHcC-------------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
...++++.|.+..++.+...+... .+.+++|+||||||||++|+++++++ ...++.+....
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l------~~~~~~v~~~~ 191 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSE 191 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC------CCCEEecchHH
Confidence 446789999999999888876421 23459999999999999999999998 45555554332
Q ss_pred Ccch--hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhh-----cCc
Q 022641 124 DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY-----SKV 185 (294)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~-----~~~ 185 (294)
.... ......+........ ...+.+|+|||+|.+. ...+..+.+++... ...
T Consensus 192 l~~~~~g~~~~~i~~~f~~a~----------~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 192 LVRKYIGEGARLVREIFELAK----------EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHhhhHHHHHHHHHHHHHH----------hcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 1110 000111111111110 1123599999999873 22344455554332 246
Q ss_pred ceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHHHHHH
Q 022641 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAA 261 (294)
Q Consensus 186 ~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 261 (294)
+.+|++||.+..+++++.+ ||. .+.+++|+.+++.++++.++....+. ++..+..+++.+.| +.+.+..++..++
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7789999999999999886 776 79999999999999998877543332 11246667776654 2233334444444
Q ss_pred HHh----CCCCChhhhhhhccc
Q 022641 262 RLF----GSSITSKDLISVSGY 279 (294)
Q Consensus 262 ~~~----~~~it~~~v~~~~~~ 279 (294)
..+ ...|+.+++.+++..
T Consensus 341 ~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 341 MFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHhCCCccCHHHHHHHHHH
Confidence 333 467999999988765
No 113
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.80 E-value=1.3e-17 Score=140.64 Aligned_cols=170 Identities=21% Similarity=0.281 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc--C-----------------CcceeecCC-----
Q 022641 68 EVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY--K-----------------SRVLELNAS----- 122 (294)
Q Consensus 68 ~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~--~-----------------~~~~~~~~~----- 122 (294)
.....+... .++.++ ++|+||+|+||+++|..+++.+.|.... . ..+..+...
T Consensus 8 ~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~ 85 (342)
T PRK06964 8 DDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAE 85 (342)
T ss_pred HHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccc
Confidence 334444443 334444 8899999999999999999999886421 1 122222211
Q ss_pred ------------------------CCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHH
Q 022641 123 ------------------------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRT 178 (294)
Q Consensus 123 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~ 178 (294)
.....+.++.....+... ...+++.|+|||++|.|+....|.|++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~----------~~~~~~kV~iI~~ae~m~~~AaNaLLKt 155 (342)
T PRK06964 86 APGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVG----------THRGGARVVVLYPAEALNVAAANALLKT 155 (342)
T ss_pred ccccccccccchhhcccccccccccccCHHHHHHHHHHhccC----------CccCCceEEEEechhhcCHHHHHHHHHH
Confidence 112334444443332221 1234567999999999999999999999
Q ss_pred HHhhcCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHH
Q 022641 179 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (294)
Q Consensus 179 l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l 257 (294)
+|+++..+.+|++|+.+..+++.++|||..+.|.||+.+++..+|.. .+ +++. +.+...++|++..++.++
T Consensus 156 LEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~----~~--~~~~--~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 156 LEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAA----QG--VADA--DALLAEAGGAPLAALALA 226 (342)
T ss_pred hcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHH----cC--CChH--HHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999853 23 3332 234677899998887765
No 114
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.79 E-value=3.8e-18 Score=150.00 Aligned_cols=213 Identities=14% Similarity=0.145 Sum_probs=141.4
Q ss_pred cchhhc-cc--HHHHHHHHHHHHcCC-CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHH
Q 022641 59 QVKDVA-HQ--EEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (294)
Q Consensus 59 ~~~~~~-g~--~~~~~~l~~~l~~~~-~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (294)
+|++++ |. ..+......+..... ...++|+||+|+|||||++++++++.... .+..++.+++.+. .....
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~f-----~~~~~ 176 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKF-----LNDLV 176 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHH-----HHHHH
Confidence 566555 43 333345555554332 23599999999999999999999874221 1234444443321 11111
Q ss_pred HHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhhcC-cceEEEEecCC-c---ccchHhhcccc
Q 022641 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYI-S---RIIEPLASRCA 207 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--~~~~~~L~~~l~~~~~-~~~ii~~~~~~-~---~~~~~l~~r~~ 207 (294)
..+...... ..........++|+|||++.+. ...+..|+..++.... ...+|++++.. . .+.+++.+|+.
T Consensus 177 ~~~~~~~~~---~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~ 253 (440)
T PRK14088 177 DSMKEGKLN---EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ 253 (440)
T ss_pred HHHhcccHH---HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHh
Confidence 111000000 0000000124699999999874 2345667777765443 34566766533 2 35678899987
Q ss_pred ---EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhhhcccc
Q 022641 208 ---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGYP 280 (294)
Q Consensus 208 ---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~~~ 280 (294)
.+.+.||+.+.+..++++.+...++.++++++++|++.+.||+|.+...+..+..++ +..||.+.+.+++...
T Consensus 254 ~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 254 MGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred cCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998888765544 6779999998888754
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.78 E-value=5.6e-18 Score=135.55 Aligned_cols=191 Identities=18% Similarity=0.230 Sum_probs=123.8
Q ss_pred Ccchhhc-c--cHHHHHHHHHHHHcCCC--CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHH
Q 022641 58 KQVKDVA-H--QEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (294)
Q Consensus 58 ~~~~~~~-g--~~~~~~~l~~~l~~~~~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (294)
.+|+.++ | ++.+............. ..++|+||+|+|||||++++++++.... .+..++.+++..... ....
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~~~~f~~--~~~~ 81 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLSAEEFIR--EFAD 81 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEEHHHHHH--HHHH
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeecHHHHHH--HHHH
Confidence 3566664 4 45555555555544332 2489999999999999999999873211 133444443322100 0000
Q ss_pred HH-----HHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHHhhcC-cceEEEEecCC----cccch
Q 022641 133 KI-----KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALRRTMETYSK-VTRFFFICNYI----SRIIE 200 (294)
Q Consensus 133 ~~-----~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~--~~~~L~~~l~~~~~-~~~ii~~~~~~----~~~~~ 200 (294)
.+ ..+... ....++|+|||++.+... .++.|+.+++.... ...+|++++.+ ..+.+
T Consensus 82 ~~~~~~~~~~~~~------------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 82 ALRDGEIEEFKDR------------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHTTSHHHHHHH------------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHcccchhhhhh------------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 00 111111 112469999999999754 47888888876543 44677777543 23577
Q ss_pred Hhhcccc---EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 022641 201 PLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (294)
Q Consensus 201 ~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 263 (294)
.+.+|+. .+.+.+|+.+.+..++++.+...++.++++++++|++...+|+|.+...+.....+
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 8999986 89999999999999999999999999999999999999999999999999877655
No 116
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.8e-18 Score=151.35 Aligned_cols=207 Identities=24% Similarity=0.205 Sum_probs=153.5
Q ss_pred CCcchhhcccHHHHHHHHHHHH---c---------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLE---T---------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
+..|+++.|.++++++|.+.+. + .-++.++|+||||||||.||+++|.++ +.+|+.++++..
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------gVPF~svSGSEF 380 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSVSGSEF 380 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------CCceeeechHHH
Confidence 3578999999999987776653 2 123459999999999999999999999 889998887763
Q ss_pred ------cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH---------------HHHHHHHHHHHhhc
Q 022641 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE---------------DAQNALRRTMETYS 183 (294)
Q Consensus 125 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~---------------~~~~~L~~~l~~~~ 183 (294)
.....+++++...... .+.+++|||+|.+.. ...+.|+--|+.+.
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~--------------aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKN--------------APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred HHHhcccchHHHHHHHHHhhcc--------------CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 2233444444443332 345999999997632 23556666666544
Q ss_pred --CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHH-HHHHH
Q 022641 184 --KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR-AITYL 257 (294)
Q Consensus 184 --~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~-~~~~l 257 (294)
..+.++.+||.+..+++++++ ||. .+++..|+...+..|++.+++.-....++..+..++..+.|.... +.|++
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 345667778999999999987 887 799999999999999999998766665666777799998875444 44666
Q ss_pred HHHHHHh----CCCCChhhhhhhcccccCC
Q 022641 258 QGAARLF----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~~~~~ 283 (294)
..++..+ ...|+..++..++......
T Consensus 527 neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 527 NEAALLAARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred hHHHHHHHHhccCccchhhHHHHHHHHhcc
Confidence 6666665 4579999998888854444
No 117
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.78 E-value=1.2e-17 Score=156.53 Aligned_cols=207 Identities=19% Similarity=0.202 Sum_probs=142.4
Q ss_pred CCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
...|+++.|.+..+..|.+.+.. ..+.+++|+||||||||++|++++.++ +.+++.+.+++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~ 522 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPE 522 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHH
Confidence 44788999999999888777642 122359999999999999999999998 67788777654
Q ss_pred Ccc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC------------HHHHHHHHHHHHh--hc
Q 022641 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQNALRRTMET--YS 183 (294)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~------------~~~~~~L~~~l~~--~~ 183 (294)
..+ ...++..+...... .+.+|+|||+|.+. ....+.|+..++. ..
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~--------------~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQA--------------APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhc--------------CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 322 22333333332221 23599999999873 1245566777764 23
Q ss_pred CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHhhccC----cHHHHHH
Q 022641 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQG----DLRRAIT 255 (294)
Q Consensus 184 ~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~l~~~~~G----~~r~~~~ 255 (294)
....+|++||.+..+++++++ ||. .+.+++|+.+++.++++.... +..+++ ..+..+++.+.| |+..+++
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~--~~~~~~~~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR--SMPLAEDVDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc--CCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 467788899999999999986 897 899999999999999986654 344433 347777877654 4544443
Q ss_pred HHHHHHHHh-------------------CCCCChhhhhhhcccccCCCC
Q 022641 256 YLQGAARLF-------------------GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 256 ~l~~~~~~~-------------------~~~it~~~v~~~~~~~~~~~~ 285 (294)
.....+... ...|+.+|+..++....+...
T Consensus 667 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 667 EAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred HHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 222222110 125889999998888776644
No 118
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.77 E-value=1.5e-17 Score=141.49 Aligned_cols=214 Identities=14% Similarity=0.168 Sum_probs=147.7
Q ss_pred cchhhc---ccHHHHHHHHHHHHcCC--CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH
Q 022641 59 QVKDVA---HQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (294)
Q Consensus 59 ~~~~~~---g~~~~~~~l~~~l~~~~--~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (294)
+|+.++ ++.-+......+-...+ .+.++|+||+|.|||||++++++...... ....++.+...+. ....
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~-~~a~v~y~~se~f-----~~~~ 158 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG-PNARVVYLTSEDF-----TNDF 158 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhC-CCceEEeccHHHH-----HHHH
Confidence 455554 44555566666666543 33499999999999999999999984321 1222333322221 1111
Q ss_pred HHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhhcCcc-eEEEEecCC-c---ccchHhhccc
Q 022641 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSKVT-RFFFICNYI-S---RIIEPLASRC 206 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--~~~~~L~~~l~~~~~~~-~ii~~~~~~-~---~~~~~l~~r~ 206 (294)
+...... ....-...+ ..++++|||++.+.. ..++.++..++...... .+++++..+ . .+.+.+.+|+
T Consensus 159 v~a~~~~----~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~ 233 (408)
T COG0593 159 VKALRDN----EMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRL 233 (408)
T ss_pred HHHHHhh----hHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHH
Confidence 1111110 000000112 346999999999864 45778888887665544 566666443 2 3568999998
Q ss_pred c---EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhhhcccc
Q 022641 207 A---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGYP 280 (294)
Q Consensus 207 ~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~~~ 280 (294)
. .+.+.||+.+.+..+|++.+...++.++++++.+++.....|+|++...+..+..++ +..||.+.+++++...
T Consensus 234 ~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~ 313 (408)
T COG0593 234 EWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDL 313 (408)
T ss_pred hceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHh
Confidence 6 899999999999999999999999999999999999999999999998888776666 6689999999988775
Q ss_pred cCC
Q 022641 281 TGG 283 (294)
Q Consensus 281 ~~~ 283 (294)
...
T Consensus 314 ~~~ 316 (408)
T COG0593 314 LRA 316 (408)
T ss_pred hcc
Confidence 443
No 119
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.77 E-value=1.8e-18 Score=162.28 Aligned_cols=216 Identities=22% Similarity=0.252 Sum_probs=138.6
Q ss_pred hhcccHHHHHHHHHHHHc------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHH
Q 022641 62 DVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (294)
++.|++.+++.+..++.. ...++++|+||||||||++|+++++.+ +..++.++.........+.....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l------~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL------NRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh------cCCeEEEeCCCcccHHHHcCCCC
Confidence 577899999888886642 234569999999999999999999998 56666665543222211110000
Q ss_pred HHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH----HHHHHHHHHHhh--------c-------CcceEEEEecCCc
Q 022641 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETY--------S-------KVTRFFFICNYIS 196 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~----~~~~L~~~l~~~--------~-------~~~~ii~~~~~~~ 196 (294)
.+.....+..............+|+|||+|.+... ..+.|+++++.. + .++.+|+|+|...
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~ 474 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID 474 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCch
Confidence 00000000000000000112349999999999653 246788877631 0 3466788999999
Q ss_pred ccchHhhccccEEEecCCCHHHHHHHHHHHH-----HHhC-----CCCCHHHHHHHHhhcc--CcHHHHHHHHH----HH
Q 022641 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHIC-----NEEG-----LNLDAEALSTLSSISQ--GDLRRAITYLQ----GA 260 (294)
Q Consensus 197 ~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~-----~~~~-----~~~~~~~l~~l~~~~~--G~~r~~~~~l~----~~ 260 (294)
.+++++++||.+|.|++++.++...++++++ +..+ +.++++++..|++.+. ...|.+...++ .+
T Consensus 475 ~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~ 554 (775)
T TIGR00763 475 TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKA 554 (775)
T ss_pred hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765 2233 4689999999987532 23444333333 22
Q ss_pred HHH-h-----C------CCCChhhhhhhcccccCC
Q 022641 261 ARL-F-----G------SSITSKDLISVSGYPTGG 283 (294)
Q Consensus 261 ~~~-~-----~------~~it~~~v~~~~~~~~~~ 283 (294)
+.- . . -.|+.+++...++.+...
T Consensus 555 ~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~~~~ 589 (775)
T TIGR00763 555 AVKLVEQGEKKKSEAESVVITPDNLKKYLGKPVFT 589 (775)
T ss_pred HHHHHhccCcccCCcccccCCHHHHHHhcCccccc
Confidence 221 1 1 268888999998876544
No 120
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.77 E-value=1.9e-17 Score=137.29 Aligned_cols=105 Identities=25% Similarity=0.296 Sum_probs=81.2
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC------------CcccchHhhccccEEEecCCCHHHHHHHH
Q 022641 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY------------ISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (294)
Q Consensus 156 ~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~------------~~~~~~~l~~r~~~i~~~~~~~~~~~~~l 223 (294)
++||||||+|.|+-++...|.+.++.. ....+|++||. ++.++..|++||.+|...|++.+++++++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~-~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESE-LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTST-T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCC-CCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 569999999999999999999999873 34457777763 45688999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHhhc-cCcHHHHHHHHHHHH
Q 022641 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAA 261 (294)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~l~~~~-~G~~r~~~~~l~~~~ 261 (294)
+-.|+.+++.+++++++.|.+.. ..++|.+++++.-+.
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 99999999999999999999884 678999999988664
No 121
>PRK08181 transposase; Validated
Probab=99.77 E-value=1.7e-19 Score=147.43 Aligned_cols=199 Identities=16% Similarity=0.231 Sum_probs=129.3
Q ss_pred CCcccccccccccCCCCCcccCCCC--cccCCCCchHHHHhhccccccCCchhhhhcCCCcchhhcc-cHHHHHHHH---
Q 022641 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVLT--- 74 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~l~--- 74 (294)
|+++|+++...+...++++.+++.. +.|...|.++...+.++ .+.+|..+.+..+++....+ .+..+..+.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~e~L~~ll~~E~~~R~~~~~~r~lk---~A~~p~~~tle~fd~~~~~~~~~~~~~~L~~~~ 100 (269)
T PRK08181 24 IKTLWPQFAEQADKEGWPAARFLAAIAEHELAERARRRIERHLA---EAHLPPGKTLDSFDFEAVPMVSKAQVMAIAAGD 100 (269)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHhhCCccCCCCCCHHHHHHHHHHH
Confidence 4567888888888899999999987 56777777777777777 67778766666666665544 344444443
Q ss_pred HHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCC
Q 022641 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154 (294)
Q Consensus 75 ~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (294)
.|+. ...+++|+||||||||||+.++++++... +..++.+...+ +...+.. ...............
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~~~~~------L~~~l~~---a~~~~~~~~~l~~l~ 166 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFTRTTD------LVQKLQV---ARRELQLESAIAKLD 166 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc---CCceeeeeHHH------HHHHHHH---HHhCCcHHHHHHHHh
Confidence 4554 44589999999999999999999988432 22333332211 1111111 000000000000123
Q ss_pred CcEEEEEeCCCCCC--HHHHHHHHHHHHhhcCcceEEEEecCCcc--------------cchHhhccccEEEecCCCH
Q 022641 155 PYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYISR--------------IIEPLASRCAKFRFKPLSE 216 (294)
Q Consensus 155 ~~~lliiDei~~l~--~~~~~~L~~~l~~~~~~~~ii~~~~~~~~--------------~~~~l~~r~~~i~~~~~~~ 216 (294)
+.++|||||++..+ ....+.|+++++..+....+|++||.+.. +.+++.+++..+.|...+.
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~ 244 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESY 244 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccc
Confidence 45699999999875 44567899999988877789999986532 2345555666888877663
No 122
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.77 E-value=1.2e-16 Score=131.73 Aligned_cols=201 Identities=16% Similarity=0.157 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHH---------HHHHH
Q 022641 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT---------KIKTF 137 (294)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 137 (294)
+..++.+..++..+. +++|+||||||||++|+++++.+ +.+++.+++........+.. ....+
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~ 79 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQF 79 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHH
Confidence 345566666776654 79999999999999999999977 67777776655433222111 00111
Q ss_pred Hhhhcc--------cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc----------------CcceEEEEec
Q 022641 138 AAVAVG--------SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFICN 193 (294)
Q Consensus 138 ~~~~~~--------~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~----------------~~~~ii~~~~ 193 (294)
...... ....+.......+.+|+|||++.++++.++.|+.++++.. ..+.+|+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 80 IHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred HHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeC
Confidence 000000 0000000001234699999999999999999999997532 2567888988
Q ss_pred CC-----cccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhc------c----CcHHHHHHHHH
Q 022641 194 YI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS------Q----GDLRRAITYLQ 258 (294)
Q Consensus 194 ~~-----~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~------~----G~~r~~~~~l~ 258 (294)
.. ..+++++.+||..+.+..|+.++..+++...+ .++++.++.+++.. + -.+|..+...+
T Consensus 160 ~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~ 234 (262)
T TIGR02640 160 PVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAE 234 (262)
T ss_pred CccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHH
Confidence 65 24578999999999999999999999987643 35676666665441 1 13888888888
Q ss_pred HHHHHh-CCCCChhhhhhhcccc
Q 022641 259 GAARLF-GSSITSKDLISVSGYP 280 (294)
Q Consensus 259 ~~~~~~-~~~it~~~v~~~~~~~ 280 (294)
.++... ...++.+++.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~ 257 (262)
T TIGR02640 235 VATQQDIPVDVDDEDFVDLCIDI 257 (262)
T ss_pred HHHHcCCCCCCCcHHHHHHHHHH
Confidence 877765 4468888888877554
No 123
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.77 E-value=8e-18 Score=156.57 Aligned_cols=246 Identities=20% Similarity=0.227 Sum_probs=158.2
Q ss_pred CCCCchHHHHhhccccccCCchhhhhcCCCcc----------hhhcccHHHHHHHHHHHHc------CCCCcEEEECCCC
Q 022641 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV----------KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPG 92 (294)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~~~~l~~~l~~------~~~~~ill~Gp~G 92 (294)
.+.+.+..+-+.+..+ ..+.||.+.. +..+ ++..|.+.+++.+..++.. ...+.++|+||||
T Consensus 282 ~~~~~e~~~~~~yl~~-~~~~pw~~~~-~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG 359 (784)
T PRK10787 282 SPMSAEATVVRGYIDW-MVQVPWNARS-KVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPG 359 (784)
T ss_pred CCCCchHHHHHHHHHH-HHhCCCCCCC-cccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCC
Confidence 4445555555555554 3457895543 3222 2577999999999887763 3445699999999
Q ss_pred CCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHH-
Q 022641 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA- 171 (294)
Q Consensus 93 ~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~- 171 (294)
+|||++++.++..+ +..++.++.+.......+......+.....+..............+++|||+|.++...
T Consensus 360 ~GKTtl~~~ia~~l------~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~ 433 (784)
T PRK10787 360 VGKTSLGQSIAKAT------GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMR 433 (784)
T ss_pred CCHHHHHHHHHHHh------CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccC
Confidence 99999999999988 66677676555444333322211111111000000000011123599999999998764
Q ss_pred ---HHHHHHHHHhhc---------------CcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHH----
Q 022641 172 ---QNALRRTMETYS---------------KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE---- 229 (294)
Q Consensus 172 ---~~~L~~~l~~~~---------------~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~---- 229 (294)
.+.|+++++... ..+.+|+|+|.. .++++|++||.++.|.+++.++..++.++++..
T Consensus 434 g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~ 512 (784)
T PRK10787 434 GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIE 512 (784)
T ss_pred CCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHH
Confidence 578998887311 445566666665 699999999999999999999999999887741
Q ss_pred -h-----CCCCCHHHHHHHHhhcc--CcHHHHHHHHHHHHHHh------C-----CCCChhhhhhhcccccCC
Q 022641 230 -E-----GLNLDAEALSTLSSISQ--GDLRRAITYLQGAARLF------G-----SSITSKDLISVSGYPTGG 283 (294)
Q Consensus 230 -~-----~~~~~~~~l~~l~~~~~--G~~r~~~~~l~~~~~~~------~-----~~it~~~v~~~~~~~~~~ 283 (294)
. .+.++++++..|++.+. -..|.+-..++..+... + -.|+.+++.+.++.....
T Consensus 513 ~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~~~ 585 (784)
T PRK10787 513 RNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFD 585 (784)
T ss_pred HhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCCccc
Confidence 1 24589999999987542 11333333333322211 2 259999999999986543
No 124
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=6.5e-17 Score=132.47 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=121.6
Q ss_pred HHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCC----------ccCCcceeecCCC---CcchhHHHHHH
Q 022641 69 VVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE----------LYKSRVLELNASD---DRGINVVRTKI 134 (294)
Q Consensus 69 ~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~~~ 134 (294)
..+.|...+..++.+| ++|+||+|+||+++|..+++.+.|.. ..+..+..+.+.. ..+.+.++...
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~ 84 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIK 84 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHH
Confidence 4567888888888877 78999999999999999999998853 2233444443322 13566666655
Q ss_pred HHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEecCC
Q 022641 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~ 214 (294)
..+...+. .+.+.++|||++|.++....+.|++.+|+++.++.+|++|+.+..+++.++|||+.+.|+|+
T Consensus 85 ~~~~~~p~----------e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 85 KQIWIHPY----------ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred HHHhhCcc----------CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 55444332 24567999999999999999999999999999999999999999999999999999999886
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHH
Q 022641 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLR 251 (294)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r 251 (294)
.. ..++++.+..++..++|+++
T Consensus 155 ~~---------------~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 155 EK---------------TLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred hc---------------cCCCHHHHHHHHHHhCCChh
Confidence 21 13566666666666777663
No 125
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.75 E-value=1.1e-16 Score=134.83 Aligned_cols=229 Identities=16% Similarity=0.110 Sum_probs=143.0
Q ss_pred CCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccC-C--cceeecCC----------
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK-S--RVLELNAS---------- 122 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~-~--~~~~~~~~---------- 122 (294)
.|..|.+++|++..++.+.-.+...+..+++|.|+||+|||++|++++..+.+..... . .+......
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 5788999999999999887655434445799999999999999999999983211100 0 00000000
Q ss_pred ------------CCcchhHHHHHHHHHHhh-hcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc------
Q 022641 123 ------------DDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------ 183 (294)
Q Consensus 123 ------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~------ 183 (294)
...+.+.+...+.--... ........+....+.+++|++||++.+++..++.|++.+++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~ 162 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVERE 162 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEEC
Confidence 000000000000000000 0011122333334566899999999999999999999998643
Q ss_pred -------CcceEEEEecCCc-ccchHhhcccc-EEEecCCCH-HHHHHHHHHHHHH------------------------
Q 022641 184 -------KVTRFFFICNYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICNE------------------------ 229 (294)
Q Consensus 184 -------~~~~ii~~~~~~~-~~~~~l~~r~~-~i~~~~~~~-~~~~~~l~~~~~~------------------------ 229 (294)
..+.++.++|... .+.+++..||. .+.+.++.. ++..+++.+....
T Consensus 163 G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (334)
T PRK13407 163 GLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILG 242 (334)
T ss_pred CeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHH
Confidence 2334444455433 47889999998 678877766 6666666653211
Q ss_pred -----hCCCCCHHHHHHHHhhc---c-CcHHHHHHHHHHHHHHh----CCCCChhhhhhhcccccCCC
Q 022641 230 -----EGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF----GSSITSKDLISVSGYPTGGS 284 (294)
Q Consensus 230 -----~~~~~~~~~l~~l~~~~---~-G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~~~ 284 (294)
..+.++++.++++++.+ + ..+|..+.++..+...+ .+.++.++|..+...+-.+.
T Consensus 243 a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR 310 (334)
T PRK13407 243 ARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMALSHR 310 (334)
T ss_pred HHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhh
Confidence 13558888888887763 2 36788777777666555 56799999988876655443
No 126
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.1e-17 Score=138.24 Aligned_cols=223 Identities=21% Similarity=0.274 Sum_probs=152.2
Q ss_pred hhcCCCcchhhcccHHHHHHHHHH----HHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchh
Q 022641 53 EKYRPKQVKDVAHQEEVVRVLTNT----LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (294)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~l~~~----l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (294)
+.|-|.. +.+++..+..+... +..+.+.|++++||||||||++++.+.+++..+.. ...++.+||....+..
T Consensus 12 ~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-~~~~~yINc~~~~t~~ 87 (366)
T COG1474 12 EDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-NVEVVYINCLELRTPY 87 (366)
T ss_pred CCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-cCceEEEeeeeCCCHH
Confidence 3444533 77777777665544 45667778999999999999999999999953321 1127788887766655
Q ss_pred HHHHHHHHHHhhhcccCccCC---------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH---hhcCcceEEEEecCCc
Q 022641 129 VVRTKIKTFAAVAVGSGQRRG---------GYPCPPYKIIILDEADSMTEDAQNALRRTME---TYSKVTRFFFICNYIS 196 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~lliiDei~~l~~~~~~~L~~~l~---~~~~~~~ii~~~~~~~ 196 (294)
.+...+..........+.... .......-+|+|||+|.|.....+.|+.++. .....+.+|+++|...
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 444333332211111111000 0113456799999999997654455555554 3333456777777653
Q ss_pred ---ccchHhhcccc--EEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHhh---ccCcHHHHHHHHHHHHHHh--
Q 022641 197 ---RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSI---SQGDLRRAITYLQGAARLF-- 264 (294)
Q Consensus 197 ---~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~l~~~---~~G~~r~~~~~l~~~~~~~-- 264 (294)
.+.+.+.+++. .|.|+|++.+|+.+++...+... .-.+++++++.++.. .+||.|.++.+|..++..+
T Consensus 168 ~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 168 FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHh
Confidence 46777888775 68999999999999999988642 234788888877744 6789999999999999888
Q ss_pred --CCCCChhhhhhhccc
Q 022641 265 --GSSITSKDLISVSGY 279 (294)
Q Consensus 265 --~~~it~~~v~~~~~~ 279 (294)
...++.+++..+...
T Consensus 248 ~~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 248 EGSRKVSEDHVREAQEE 264 (366)
T ss_pred hCCCCcCHHHHHHHHHH
Confidence 456999999888443
No 127
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.75 E-value=7.3e-17 Score=152.80 Aligned_cols=208 Identities=18% Similarity=0.206 Sum_probs=152.0
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCC----CccCCcceeecC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNA 121 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~----~~~~~~~~~~~~ 121 (294)
....++.++.++..++.++|+++.++.+...+......|++|+||||||||+++++++..+... ...+..++.++.
T Consensus 158 ~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 158 KYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred HHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 5567899999999999999999999999999999888899999999999999999999987421 112445555543
Q ss_pred CCCc----chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhhcCcceEE
Q 022641 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFF 189 (294)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------~~~~~L~~~l~~~~~~~~ii 189 (294)
.... ........+..+...... ...+.||||||+|.+.. +..+.|...++. ....+|
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~---------~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~I 306 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTK---------SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCI 306 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHh---------cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEE
Confidence 3221 111222222332222110 01245999999998852 245667666653 456777
Q ss_pred EEecCC-----cccchHhhccccEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHhhccC---c---HHHHH
Q 022641 190 FICNYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG---D---LRRAI 254 (294)
Q Consensus 190 ~~~~~~-----~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~l~~~~~G---~---~r~~~ 254 (294)
.+|+.. ...++++.+||..+.+++|+.++...+++.+... +++.++++++..++.++.+ + |..++
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAi 386 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAI 386 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHH
Confidence 777654 3578999999999999999999999999877654 4677899999998887653 3 88999
Q ss_pred HHHHHHHHHh
Q 022641 255 TYLQGAARLF 264 (294)
Q Consensus 255 ~~l~~~~~~~ 264 (294)
.+++.++...
T Consensus 387 dlld~a~a~~ 396 (852)
T TIGR03346 387 DLIDEAAARI 396 (852)
T ss_pred HHHHHHHHHH
Confidence 9999887644
No 128
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.7e-17 Score=125.69 Aligned_cols=213 Identities=22% Similarity=0.256 Sum_probs=144.2
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcc
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV 116 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~ 116 (294)
-.+++.-..+++-+-|.+..++.+.+.+.- ..+..++|+||||+|||.+|+++++.. .+.|
T Consensus 136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~f 209 (404)
T KOG0728|consen 136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTF 209 (404)
T ss_pred HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEE
Confidence 344555555565566778888887777643 234469999999999999999999988 7788
Q ss_pred eeecCCCCcch------hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHH
Q 022641 117 LELNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTM 179 (294)
Q Consensus 117 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l 179 (294)
+.++++..... .-+++.+-...... +.+||+||+|.+. .+.+...+.++
T Consensus 210 irvsgselvqk~igegsrmvrelfvmareha--------------psiifmdeidsigs~r~e~~~ggdsevqrtmlell 275 (404)
T KOG0728|consen 210 IRVSGSELVQKYIGEGSRMVRELFVMAREHA--------------PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELL 275 (404)
T ss_pred EEechHHHHHHHhhhhHHHHHHHHHHHHhcC--------------CceEeeecccccccccccCCCCccHHHHHHHHHHH
Confidence 88877654322 12222222222222 2499999999873 23455555555
Q ss_pred Hh---h--cCcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHhhccC-c
Q 022641 180 ET---Y--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-D 249 (294)
Q Consensus 180 ~~---~--~~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~l~~~~~G-~ 249 (294)
+. + ..+..+|++||...-+++++++ |.. .|+|+||+.+...++++-...+.++ +.. .+..+++...| +
T Consensus 276 nqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl--~rgi~l~kiaekm~gas 353 (404)
T KOG0728|consen 276 NQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL--TRGINLRKIAEKMPGAS 353 (404)
T ss_pred HhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch--hcccCHHHHHHhCCCCc
Confidence 43 2 3567899999999999999987 555 7999999999999999877665433 221 25666666443 2
Q ss_pred HHHHHHHHHHHHHHh----CCCCChhhhhhhcccccCCC
Q 022641 250 LRRAITYLQGAARLF----GSSITSKDLISVSGYPTGGS 284 (294)
Q Consensus 250 ~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~~~ 284 (294)
-..+-..+..+..++ .-++|.++++-+++.+...+
T Consensus 354 gaevk~vcteagm~alrerrvhvtqedfemav~kvm~k~ 392 (404)
T KOG0728|consen 354 GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 392 (404)
T ss_pred cchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhcc
Confidence 234445566666666 44699999999888765543
No 129
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.9e-18 Score=148.17 Aligned_cols=222 Identities=20% Similarity=0.269 Sum_probs=150.2
Q ss_pred CCCchHHHHhhccccccCCchhhhhcCCCcc----------hhhcccHHHHHHHHHHHHcCC------CCcEEEECCCCC
Q 022641 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV----------KDVAHQEEVVRVLTNTLETAN------CPHMLFYGPPGT 93 (294)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~~~~l~~~l~~~~------~~~ill~Gp~G~ 93 (294)
+..++-..-|++..+ ..+.||-+ +....+ ++-.|-+++++.+.+.+.-++ ++.++|+||||+
T Consensus 372 ~~~sEfnvtrNYLdw-lt~LPWgk-~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGV 449 (906)
T KOG2004|consen 372 PSSSEFNVTRNYLDW-LTSLPWGK-SSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGV 449 (906)
T ss_pred ccccchhHHHHHHHH-HHhCCCCC-CChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCC
Confidence 334444555555554 56778843 222233 244577888888888886543 345999999999
Q ss_pred CHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH---
Q 022641 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--- 170 (294)
Q Consensus 94 GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~--- 170 (294)
|||++++.+|+.+ +..|+.++.........++.--..+.....+............+.+++|||+|.+...
T Consensus 450 GKTSI~kSIA~AL------nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qG 523 (906)
T KOG2004|consen 450 GKTSIAKSIARAL------NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQG 523 (906)
T ss_pred CcccHHHHHHHHh------CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCC
Confidence 9999999999999 7888888777666666665444443333332222222222344569999999998532
Q ss_pred -HHHHHHHHHHh------------hc---CcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHHHHH-----H
Q 022641 171 -AQNALRRTMET------------YS---KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN-----E 229 (294)
Q Consensus 171 -~~~~L~~~l~~------------~~---~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~-----~ 229 (294)
-...|+.+++- .+ ..+.||+|+|....++++|++|+.+|++..+..+|-.+|.++++- .
T Consensus 524 DPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~ 603 (906)
T KOG2004|consen 524 DPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKD 603 (906)
T ss_pred ChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHH
Confidence 24566666641 11 345688888999999999999999999999999999999888763 2
Q ss_pred -----hCCCCCHHHHHHHHhhcc--CcHHHHHHHHHH
Q 022641 230 -----EGLNLDAEALSTLSSISQ--GDLRRAITYLQG 259 (294)
Q Consensus 230 -----~~~~~~~~~l~~l~~~~~--G~~r~~~~~l~~ 259 (294)
+.+.++++++..|++... ..+|.+-..+..
T Consensus 604 ~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iek 640 (906)
T KOG2004|consen 604 CGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEK 640 (906)
T ss_pred cCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 335689999888777632 235655554443
No 130
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.5e-17 Score=129.70 Aligned_cols=215 Identities=20% Similarity=0.186 Sum_probs=141.1
Q ss_pred CcchhhcccHHHHHHHHHHHH---------cCCC---CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 58 KQVKDVAHQEEVVRVLTNTLE---------TANC---PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~---------~~~~---~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
..|.++.|.+.+++.|.+++- .++. +.++|+||||||||.||+++|.++ +..|+.++.++..
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLv 203 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLV 203 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHH
Confidence 368999999999999988752 2322 349999999999999999999999 7888888887755
Q ss_pred chh--HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH-----------HH-HHHHHHHHH--hhcCcceEE
Q 022641 126 GIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DA-QNALRRTME--TYSKVTRFF 189 (294)
Q Consensus 126 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~-----------~~-~~~L~~~l~--~~~~~~~ii 189 (294)
+.. .-..++..+.... +..++.||||||||.+.. .. -+.|.++-- .....+.++
T Consensus 204 SKWmGESEkLVknLFemA----------Re~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMA----------RENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred HHHhccHHHHHHHHHHHH----------HhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 432 1122333332222 123456999999998731 11 223333322 222456677
Q ss_pred EEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCc--------HHHHHH----H
Q 022641 190 FICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD--------LRRAIT----Y 256 (294)
Q Consensus 190 ~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~--------~r~~~~----~ 256 (294)
.+||-++.++.++++||. .|+++-|...-+...++-.+..-...++++.+.+|+..+.|. +|.++. -
T Consensus 274 gATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred ecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 788999999999999998 788877777766666655554444568999999999987662 233332 2
Q ss_pred HHHHHHHhC--CCCChhhhhhhcccccCCCCCcc
Q 022641 257 LQGAARLFG--SSITSKDLISVSGYPTGGSGGAF 288 (294)
Q Consensus 257 l~~~~~~~~--~~it~~~v~~~~~~~~~~~~~~~ 288 (294)
.|.+..+.. ..-...++..++...++.+.+++
T Consensus 354 vqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~ 387 (439)
T KOG0739|consen 354 VQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAI 387 (439)
T ss_pred hhhhhhhhccCCCCChhhhccccCCCCCCCcchh
Confidence 333333321 11134446667776666655443
No 131
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.74 E-value=6.1e-17 Score=149.69 Aligned_cols=222 Identities=16% Similarity=0.142 Sum_probs=153.8
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC----ccCCcceeecC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~ 121 (294)
.....+.+.-+...++.++|++..+..+.+.+......|++|+||||||||++|+.++....... ..+..++.++.
T Consensus 171 ~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred HHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 34456666667778889999999999999999998888999999999999999999998763221 12334444332
Q ss_pred CCCc----chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhhcCcceE
Q 022641 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRF 188 (294)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~---------~~~~~~L~~~l~~~~~~~~i 188 (294)
.... ........+..+...... ..+.+|||||+|.+- .+..+.|..+++. ....+
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~----------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~v 318 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQ----------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRV 318 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHh----------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEE
Confidence 2211 111222222222211100 123599999999871 2234556666654 45667
Q ss_pred EEEecCC-----cccchHhhccccEEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHhhccC------cHHHH
Q 022641 189 FFICNYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRA 253 (294)
Q Consensus 189 i~~~~~~-----~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~l~~~~~G------~~r~~ 253 (294)
|.+|+.. ...+++|.+||..|.+++|+.++...+|+.+.. .+++.++++++..+++++.. -|..+
T Consensus 319 IgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred EecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 7777754 346899999999999999999999999987654 46788999999988876432 47799
Q ss_pred HHHHHHHHHHh--------CCCCChhhhhhhccc
Q 022641 254 ITYLQGAARLF--------GSSITSKDLISVSGY 279 (294)
Q Consensus 254 ~~~l~~~~~~~--------~~~it~~~v~~~~~~ 279 (294)
+.+++.++... ...++.+++..++..
T Consensus 399 idlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~ 432 (758)
T PRK11034 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_pred HHHHHHHHHhhccCcccccccccChhhHHHHHHH
Confidence 99999887533 223777777777654
No 132
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.3e-16 Score=141.94 Aligned_cols=208 Identities=20% Similarity=0.185 Sum_probs=148.2
Q ss_pred CCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
...|.++.|.+..+..+...+.. .....++|+||||||||++|++++.+. +.+|+.+..++
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~ 311 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSE 311 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHH
Confidence 34677887877777666665421 122359999999999999999999988 78888887764
Q ss_pred Ccc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh--hcC
Q 022641 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET--YSK 184 (294)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~--~~~ 184 (294)
..+ ...++..+..... ..+.+|+|||+|.+. ....+.|+..++. ...
T Consensus 312 l~sk~vGesek~ir~~F~~A~~--------------~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARK--------------LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred HhccccchHHHHHHHHHHHHHc--------------CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 433 2233333333321 123599999999872 2466777777753 334
Q ss_pred cceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHhhccCc-HHHHHHHHHH
Q 022641 185 VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSISQGD-LRRAITYLQG 259 (294)
Q Consensus 185 ~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~l~~~~~G~-~r~~~~~l~~ 259 (294)
.+.+|.+||.+..+++++++ ||. .+.+++|+.++..++++..+...... ..+-.++.+++.+.|- ...+..+++.
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~e 457 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVRE 457 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHH
Confidence 56678889999999999999 998 89999999999999999999765554 3455677778766552 3444455555
Q ss_pred HHHHh-----CCCCChhhhhhhcccccCCC
Q 022641 260 AARLF-----GSSITSKDLISVSGYPTGGS 284 (294)
Q Consensus 260 ~~~~~-----~~~it~~~v~~~~~~~~~~~ 284 (294)
++..+ ...+|.+++..+.....+..
T Consensus 458 a~~~~~~~~~~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 458 AALEALREARRREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHhcCCCC
Confidence 55444 33699999999998866553
No 133
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.73 E-value=9e-16 Score=127.73 Aligned_cols=230 Identities=15% Similarity=0.157 Sum_probs=139.6
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (294)
...|+.....|..+-.-.++..+...+...+.. +.+.++|+||+|+|||++++.+++.+.+... .+..+.... ..
T Consensus 9 ~~~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~---~~~~~~~~~-~~ 83 (269)
T TIGR03015 9 TTKPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQ-REGFILITGEVGAGKTTLIRNLLKRLDQERV---VAAKLVNTR-VD 83 (269)
T ss_pred CCCCCCCCCCHHHhCCCHHHHHHHHHHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCe---EEeeeeCCC-CC
Confidence 344666555555443334445555555555543 2346999999999999999999998742211 111111111 11
Q ss_pred hhHHHHHHHHHHhhhcccCcc-----C------CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh---cCcceEEEEe
Q 022641 127 INVVRTKIKTFAAVAVGSGQR-----R------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---SKVTRFFFIC 192 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~---~~~~~ii~~~ 192 (294)
.......+............. . .....+++.+|+|||++.++....+.|..+.+.. .....+++++
T Consensus 84 ~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g 163 (269)
T TIGR03015 84 AEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVG 163 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcC
Confidence 111111111111100000000 0 0001234569999999999988777766544321 1223345555
Q ss_pred cCCc------ccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHhhccCcHHHHHHHHHHHH
Q 022641 193 NYIS------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEG----LNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (294)
Q Consensus 193 ~~~~------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~ 261 (294)
.... .....+.+|+. .+.++|++.+++.+++...+...+ ..+++++++.|++.|+|++|.+..++..+.
T Consensus 164 ~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 164 QPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLL 243 (269)
T ss_pred CHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 3221 11234666754 789999999999999999887655 368999999999999999999888888775
Q ss_pred HHh----CCCCChhhhhhhccccc
Q 022641 262 RLF----GSSITSKDLISVSGYPT 281 (294)
Q Consensus 262 ~~~----~~~it~~~v~~~~~~~~ 281 (294)
..+ ...|+.++|..++....
T Consensus 244 ~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 244 LSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhh
Confidence 554 56799999999887654
No 134
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.73 E-value=2e-16 Score=139.47 Aligned_cols=171 Identities=20% Similarity=0.203 Sum_probs=114.2
Q ss_pred hhcCCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCc----cCCc
Q 022641 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSR 115 (294)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~----~~~~ 115 (294)
+..-+..|+++.|.+..++.+...+.. ..+++++|+||||||||++++++++++..+.. ....
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 445567899999999999888887632 23346999999999999999999999843211 1122
Q ss_pred ceeecCCCCcc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHH
Q 022641 116 VLELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRR 177 (294)
Q Consensus 116 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~------------~~~~~L~~ 177 (294)
++.+..+...+ ...++..+....... ....+.+|||||+|.+.. ...+.|+.
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a----------~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKA----------SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHh----------hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 23333222111 112222222222111 012345999999998732 12356666
Q ss_pred HHHhhc--CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCC
Q 022641 178 TMETYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNL 234 (294)
Q Consensus 178 ~l~~~~--~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (294)
.++... ..+.+|.+||.+..+++++++ ||. .|.|++|+.+++.++++.++.. .+.+
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l 384 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPL 384 (512)
T ss_pred HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCc
Confidence 666443 456788899999999999998 887 7999999999999999998854 3444
No 135
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.73 E-value=1.3e-16 Score=150.54 Aligned_cols=208 Identities=18% Similarity=0.177 Sum_probs=150.0
Q ss_pred cCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC----ccCCcceeecC
Q 022641 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~ 121 (294)
....|+.++.+|..++.++|+++.++.+.+.|.....+|++|+||||||||+++++++..+.... ..+..++.++.
T Consensus 163 ~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 163 KYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred HHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 56678999999999999999999999999999998888999999999999999999999984321 12455555554
Q ss_pred CCCc----chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhhcCcceEE
Q 022641 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFF 189 (294)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------~~~~~L~~~l~~~~~~~~ii 189 (294)
.... ....+...+..+...... ...+.||||||+|.+.. +..+.|...++. ....+|
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~---------~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~I 311 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAK---------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCV 311 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHH---------cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEE
Confidence 4321 111222222322221110 01235999999999852 256778877764 566778
Q ss_pred EEecCCc-----ccchHhhccccEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHhhccC------cHHHHH
Q 022641 190 FICNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAI 254 (294)
Q Consensus 190 ~~~~~~~-----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~l~~~~~G------~~r~~~ 254 (294)
.+|+... ..++++.+||..|.+..|+.++...+++.+... +++.++++++...+.++.+ -|..++
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi 391 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAI 391 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHH
Confidence 8876543 478999999999999999999999999877653 3567888888777665432 466788
Q ss_pred HHHHHHHHHh
Q 022641 255 TYLQGAARLF 264 (294)
Q Consensus 255 ~~l~~~~~~~ 264 (294)
.++..++...
T Consensus 392 ~LiD~aaa~~ 401 (857)
T PRK10865 392 DLIDEAASSI 401 (857)
T ss_pred HHHHHHhccc
Confidence 8887776543
No 136
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.3e-16 Score=122.64 Aligned_cols=197 Identities=21% Similarity=0.242 Sum_probs=130.5
Q ss_pred cchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 59 QVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
++.++-|.+-.++.+++.+.- ..++.++++||||||||.|++++++.. ...|+.+.++...
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t------~a~firvvgsefv 226 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVVGSEFV 226 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc------chheeeeccHHHH
Confidence 456777777777777666532 345569999999999999999999987 6777777766532
Q ss_pred c------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh---hc--
Q 022641 126 G------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET---YS-- 183 (294)
Q Consensus 126 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~---~~-- 183 (294)
. ..-+++.+.-... +.+.+|||||+|.+. .+.+..|+.++.. +.
T Consensus 227 qkylgegprmvrdvfrlake--------------napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKE--------------NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred HHHhccCcHHHHHHHHHHhc--------------cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 2 2223333332222 224599999999862 3355666666653 22
Q ss_pred CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh----ccCcHHHHHHH
Q 022641 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI----SQGDLRRAITY 256 (294)
Q Consensus 184 ~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~----~~G~~r~~~~~ 256 (294)
.++.+|++||....+++++++ |.. .|+|+-|+..+.+-++..+..+.++.- +-.++.++.. ++.++-.+
T Consensus 293 ~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~-~vdle~~v~rpdkis~adi~ai--- 368 (408)
T KOG0727|consen 293 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSD-EVDLEDLVARPDKISGADINAI--- 368 (408)
T ss_pred cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCc-ccCHHHHhcCccccchhhHHHH---
Confidence 467899999999999999987 555 799999999999999988887755532 2224444433 44455444
Q ss_pred HHHHHHHh----CCCCChhhhhhhccc
Q 022641 257 LQGAARLF----GSSITSKDLISVSGY 279 (294)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~~~ 279 (294)
+|.+...+ .--+...+++++-..
T Consensus 369 cqeagm~avr~nryvvl~kd~e~ay~~ 395 (408)
T KOG0727|consen 369 CQEAGMLAVRENRYVVLQKDFEKAYKT 395 (408)
T ss_pred HHHHhHHHHHhcceeeeHHHHHHHHHh
Confidence 44444443 223666677665544
No 137
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=1.1e-15 Score=125.75 Aligned_cols=173 Identities=21% Similarity=0.293 Sum_probs=130.0
Q ss_pred ccHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc------------------CCcceeecCCC-C
Q 022641 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNASD-D 124 (294)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~------------------~~~~~~~~~~~-~ 124 (294)
.++.++..+.+.+..++.++ ++|+|| +||+++|..+++.+.|.... +..+..+.... .
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 56788899999999998877 799996 68999999999999886431 12223332221 2
Q ss_pred cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhc
Q 022641 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~ 204 (294)
...+.+++....+...+. .+++.|+|||++|.++....|.|++.+|+++.++.+|++|+.+..+++.++|
T Consensus 84 I~idqIR~l~~~~~~~p~----------~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~S 153 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGY----------EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKS 153 (290)
T ss_pred CCHHHHHHHHHHHhhCcc----------cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHH
Confidence 345666666555544332 2446799999999999999999999999999999999999999999999999
Q ss_pred cccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHH
Q 022641 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (294)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l 257 (294)
||+.+.|++ +.+++.+++ ..+|+ +.+....++..+ |++..++.++
T Consensus 154 Rcq~i~f~~-~~~~~~~~L----~~~g~--~~~~a~~la~~~-~s~~~A~~l~ 198 (290)
T PRK07276 154 RTQIFHFPK-NEAYLIQLL----EQKGL--LKTQAELLAKLA-QSTSEAEKLA 198 (290)
T ss_pred cceeeeCCC-cHHHHHHHH----HHcCC--ChHHHHHHHHHC-CCHHHHHHHh
Confidence 999999966 666666666 34554 444444555544 4788888776
No 138
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.72 E-value=1.6e-16 Score=153.75 Aligned_cols=179 Identities=12% Similarity=0.131 Sum_probs=125.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchh----------------------------------
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN---------------------------------- 128 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 128 (294)
+.++|+||||||||.||+++|.+. +.+++.+++++.....
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 359999999999999999999998 6666666554322100
Q ss_pred ---------------HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH-----HHHHHHHHHHhh-----c
Q 022641 129 ---------------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-----AQNALRRTMETY-----S 183 (294)
Q Consensus 129 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~-----~~~~L~~~l~~~-----~ 183 (294)
.++..+... ....++||+|||||.+... ..+.|+..|+.. .
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelA--------------Rk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELA--------------KAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHH--------------HHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCC
Confidence 001111111 1133579999999999643 256677777643 2
Q ss_pred CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHH--HHHHHHhhccC-cHHHHHHHH
Q 022641 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE--ALSTLSSISQG-DLRRAITYL 257 (294)
Q Consensus 184 ~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~l~~l~~~~~G-~~r~~~~~l 257 (294)
..+.||.+||.+..+++++++ ||. .|.++.|+..+..+++.......++.+.++ .++.+++.|.| +.+.+.+++
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence 356788889999999999997 887 789999988888887765555556666543 47888988866 455566666
Q ss_pred HHHHHHh----CCCCChhhhhhhccccc
Q 022641 258 QGAARLF----GSSITSKDLISVSGYPT 281 (294)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~~~ 281 (294)
..|+..+ ...|+.+++..++....
T Consensus 1851 NEAaliAirq~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1851 NEALSISITQKKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 6666655 35699999998887654
No 139
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=2.1e-15 Score=125.23 Aligned_cols=174 Identities=17% Similarity=0.259 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCc-------cCCcceeecC-CCCcchhHHHHHHHHHH
Q 022641 68 EVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------YKSRVLELNA-SDDRGINVVRTKIKTFA 138 (294)
Q Consensus 68 ~~~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 138 (294)
..+..+.+.+..++.++ ++|+|+.|+||+.++..+++.++|... ....+..++. ......+.++.....+.
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 45677888888877766 679999999999999999999977421 1113333431 22244556665555543
Q ss_pred hhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEecCCCHHH
Q 022641 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~ 218 (294)
..+.. .+++.++|||+++.++....+.|++.+++++..+.+|++++.+..+.+.+.+||..+.|.|++.++
T Consensus 83 ~~~~~---------~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 83 FSSFV---------QSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred cCCcc---------cCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 33211 135679999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHH
Q 022641 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (294)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l 257 (294)
+..++.. .+ ++++....++..++| +..++.++
T Consensus 154 l~~~l~~----~~--~~~~~a~~~a~~~~~-~~~a~~~~ 185 (299)
T PRK07132 154 ILAKLLS----KN--KEKEYNWFYAYIFSN-FEQAEKYI 185 (299)
T ss_pred HHHHHHH----cC--CChhHHHHHHHHcCC-HHHHHHHH
Confidence 9988853 23 676777777777774 88777665
No 140
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.71 E-value=3.9e-16 Score=143.39 Aligned_cols=204 Identities=19% Similarity=0.135 Sum_probs=139.3
Q ss_pred CCCcchhhcccHHHHHHHHHHHHc------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
....+.++.|.+..+..+.+.+.. ..+++++|+||||||||+++++++.++ +.+++.+++++
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~------~~~f~~is~~~ 220 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSD 220 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCEEEEehHH
Confidence 345678888988877766655421 113459999999999999999999998 66777776654
Q ss_pred Cc------chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhhc
Q 022641 124 DR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS 183 (294)
Q Consensus 124 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~~ 183 (294)
.. ....++..+..... ..+.+|||||+|.+.. ...+.|+..++.+.
T Consensus 221 ~~~~~~g~~~~~~~~~f~~a~~--------------~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~ 286 (644)
T PRK10733 221 FVEMFVGVGASRVRDMFEQAKK--------------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 286 (644)
T ss_pred hHHhhhcccHHHHHHHHHHHHh--------------cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc
Confidence 21 22233333332211 1235999999998732 13455665566544
Q ss_pred --CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC----cHHHHH
Q 022641 184 --KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----DLRRAI 254 (294)
Q Consensus 184 --~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G----~~r~~~ 254 (294)
..+.+|.+||.+..+++++.+ ||. .+.++.|+.+++.++++.+++...+. .+..+..+++.+.| |+..++
T Consensus 287 ~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~ 365 (644)
T PRK10733 287 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLV 365 (644)
T ss_pred CCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHH
Confidence 346678889999999999986 886 89999999999999999988654332 22336678888776 666665
Q ss_pred HHHHHHHHHh-CCCCChhhhhhhcccc
Q 022641 255 TYLQGAARLF-GSSITSKDLISVSGYP 280 (294)
Q Consensus 255 ~~l~~~~~~~-~~~it~~~v~~~~~~~ 280 (294)
+.....+... ...|+.+++..+....
T Consensus 366 ~eAa~~a~r~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 366 NEAALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 5554433322 4569999998887644
No 141
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.71 E-value=6.4e-16 Score=123.46 Aligned_cols=127 Identities=24% Similarity=0.272 Sum_probs=107.8
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC-------------CcccchHhhccccEEEecCCCHHHHHHH
Q 022641 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY-------------ISRIIEPLASRCAKFRFKPLSEEVMSSR 222 (294)
Q Consensus 156 ~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~-------------~~~~~~~l~~r~~~i~~~~~~~~~~~~~ 222 (294)
+++|||||+|+|+-++...|.+.++..-.+ .+|+++|. ++.+++.+++|..+|...+++.++++.+
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPIAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCCCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 569999999999999999999999874444 46777753 4668899999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHh----CCCCChhhhhhhcccccCC
Q 022641 223 VLHICNEEGLNLDAEALSTLSSI-SQGDLRRAITYLQGAARLF----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 223 l~~~~~~~~~~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~~ 283 (294)
++..++.+++.++++++..+++. +..++|.++++|.-+...+ ++.|..++++++...+-+.
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Da 441 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDA 441 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhc
Confidence 99999999999999999999997 5678999999998555444 4579999998887665443
No 142
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.71 E-value=6.9e-16 Score=139.96 Aligned_cols=217 Identities=20% Similarity=0.224 Sum_probs=150.3
Q ss_pred hcCCCcchhhcccHHHHHHHHHHHHcC--CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHH
Q 022641 54 KYRPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
+.....++.++|....+..+.+.+..- ...+++|+|++||||+++|+++..... ....+++.++|..... ..+.
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~---r~~~pfv~i~c~~~~~-~~~~ 264 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP---RAKRPFVKVNCAALSE-TLLE 264 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC---CCCCCeEEeecCCCCH-HHHH
Confidence 344457889999988888777766543 334699999999999999999988642 2356889999887533 2222
Q ss_pred HHHHHHHhh-hcc-cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc--
Q 022641 132 TKIKTFAAV-AVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-- 196 (294)
Q Consensus 132 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~-- 196 (294)
..+...... ..+ .....+....+..+.|+|||++.++...+..|+..++... ..+++|++++...
T Consensus 265 ~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~ 344 (534)
T TIGR01817 265 SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEE 344 (534)
T ss_pred HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHH
Confidence 111100000 000 0111222334567899999999999999999999997643 1357888776432
Q ss_pred -----ccchHhhcccc--EEEecCCC--HHHHHHHHHHHHHH----hC--CCCCHHHHHHHHhh-ccCcHHHHHHHHHHH
Q 022641 197 -----RIIEPLASRCA--KFRFKPLS--EEVMSSRVLHICNE----EG--LNLDAEALSTLSSI-SQGDLRRAITYLQGA 260 (294)
Q Consensus 197 -----~~~~~l~~r~~--~i~~~~~~--~~~~~~~l~~~~~~----~~--~~~~~~~l~~l~~~-~~G~~r~~~~~l~~~ 260 (294)
.+...|..|+. .|.++|+. .+++..++.+++.. .+ +.+++++++.|..+ ++||+|++.++++.+
T Consensus 345 ~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a 424 (534)
T TIGR01817 345 AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERT 424 (534)
T ss_pred HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 24456777775 67888886 46676666666543 22 56899999999998 699999999999998
Q ss_pred HHHh-CCCCChhhhh
Q 022641 261 ARLF-GSSITSKDLI 274 (294)
Q Consensus 261 ~~~~-~~~it~~~v~ 274 (294)
+... +..|+.+++.
T Consensus 425 ~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 425 ATLSRSGTITRSDFS 439 (534)
T ss_pred HHhCCCCcccHHHCc
Confidence 8765 4568888875
No 143
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.71 E-value=3.6e-16 Score=130.15 Aligned_cols=149 Identities=15% Similarity=0.207 Sum_probs=110.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc------chhHHHHHHHHHHhhhcccCccCCCCCCCCc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
..++|+||||||||.+|+++++++ +..++.++++... +...++..+........ ...++
T Consensus 149 lgllL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~---------~~~aP 213 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIK---------KKGKM 213 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhh---------ccCCC
Confidence 349999999999999999999999 7888888876533 34455555554433210 11245
Q ss_pred EEEEEeCCCCCCHH-----------H-HHHHHHHHHh--------------hcCcceEEEEecCCcccchHhhc--cccE
Q 022641 157 KIIILDEADSMTED-----------A-QNALRRTMET--------------YSKVTRFFFICNYISRIIEPLAS--RCAK 208 (294)
Q Consensus 157 ~lliiDei~~l~~~-----------~-~~~L~~~l~~--------------~~~~~~ii~~~~~~~~~~~~l~~--r~~~ 208 (294)
.+|+|||+|.+... . ...|+.+++. ....+.||+|||.+..++++|++ ||..
T Consensus 214 cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk 293 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK 293 (413)
T ss_pred eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc
Confidence 69999999976321 1 2456666543 23457789999999999999999 8875
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCc
Q 022641 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (294)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~ 249 (294)
+ +..|+.+++.+|++.+++..+ ++...+..|++...|.
T Consensus 294 ~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 294 F-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred e-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 4 457999999999999987754 5688899999988775
No 144
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.71 E-value=2e-16 Score=149.49 Aligned_cols=206 Identities=17% Similarity=0.150 Sum_probs=149.8
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCC----CccCCcceeecCC
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNAS 122 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~----~~~~~~~~~~~~~ 122 (294)
....+.+.-+...++.++|++..++.+.+++.....+|++|+||||||||++|+.++..+... ...+..++.++..
T Consensus 165 ~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~ 244 (821)
T CHL00095 165 FGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG 244 (821)
T ss_pred HHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH
Confidence 344566666677788999999999999999999888899999999999999999999987421 2234567777654
Q ss_pred CCc----chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhhcCcceEEE
Q 022641 123 DDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFF 190 (294)
Q Consensus 123 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------~~~~~L~~~l~~~~~~~~ii~ 190 (294)
... ....+...+..+...... .+..||||||+|.+.. ...+.|...+.. ....+|.
T Consensus 245 ~l~ag~~~~ge~e~rl~~i~~~~~~----------~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~Ig 312 (821)
T CHL00095 245 LLLAGTKYRGEFEERLKRIFDEIQE----------NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIG 312 (821)
T ss_pred HHhccCCCccHHHHHHHHHHHHHHh----------cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEE
Confidence 321 122233333433332211 1235999999997742 245667777764 5566777
Q ss_pred EecCC-----cccchHhhccccEEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHhhccC------cHHHHHH
Q 022641 191 ICNYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAIT 255 (294)
Q Consensus 191 ~~~~~-----~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~l~~~~~G------~~r~~~~ 255 (294)
+|+.. ....+++.+||..+.+.+|+.++...+++.+.. ..++.++++++..+++++.| -|+.++.
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaid 392 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAID 392 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHH
Confidence 77654 246789999999999999999998888876553 35677999999999988765 3888999
Q ss_pred HHHHHHHHh
Q 022641 256 YLQGAARLF 264 (294)
Q Consensus 256 ~l~~~~~~~ 264 (294)
++..++...
T Consensus 393 lld~a~a~~ 401 (821)
T CHL00095 393 LLDEAGSRV 401 (821)
T ss_pred HHHHHHHHH
Confidence 999887643
No 145
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.70 E-value=1.3e-15 Score=128.37 Aligned_cols=135 Identities=24% Similarity=0.331 Sum_probs=106.3
Q ss_pred CCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCcc-------------------CCcceeecCCC----------CcchhH
Q 022641 80 ANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------------KSRVLELNASD----------DRGINV 129 (294)
Q Consensus 80 ~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~-------------------~~~~~~~~~~~----------~~~~~~ 129 (294)
++.++ ++|+||+|+|||++|..+++.+.|.... +..++.+.+.. ...++.
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 34455 8999999999999999999999875421 23455554421 134566
Q ss_pred HHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEE
Q 022641 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i 209 (294)
++.........+. .+++.|++||+++.++...++.|++.+++++....+|++|+.+..+.+.+.+||..+
T Consensus 98 iR~l~~~~~~~p~----------~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~ 167 (325)
T PRK08699 98 VREIIDNVYLTSV----------RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKM 167 (325)
T ss_pred HHHHHHHHhhCcc----------cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhh
Confidence 6665544433221 234679999999999999999999999998878889999999999999999999999
Q ss_pred EecCCCHHHHHHHHH
Q 022641 210 RFKPLSEEVMSSRVL 224 (294)
Q Consensus 210 ~~~~~~~~~~~~~l~ 224 (294)
.|.|++.+++..+|.
T Consensus 168 ~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 168 VLPAPSHEEALAYLR 182 (325)
T ss_pred cCCCCCHHHHHHHHH
Confidence 999999999999885
No 146
>PRK09183 transposase/IS protein; Provisional
Probab=99.70 E-value=4.6e-18 Score=139.32 Aligned_cols=201 Identities=11% Similarity=0.140 Sum_probs=130.2
Q ss_pred CCcccccccccccCCCCCcccCCCC--cccCCCCchHHHHhhccccccCCchhhhhcCCCcchhhccc-HHHHHHHHHHH
Q 022641 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ-EEVVRVLTNTL 77 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~l~~~l 77 (294)
|+++|++++.++...++++.+++.. +.|...|.++...++++ .+.+|+.+.+..++|....+. ...+..|..+-
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~e~l~~ll~~E~~~R~~~~~~~~~k---~a~~p~~~~l~~fd~~~~~~~~~~~i~~L~~~~ 97 (259)
T PRK09183 21 LISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTR---MAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLS 97 (259)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCcHhhcccccCCCCCHHHHHHHhcCC
Confidence 3567778888888999999999987 56777777777777777 788899888888888877664 55666665543
Q ss_pred HcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcE
Q 022641 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (294)
Q Consensus 78 ~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
......+++|+||+||||||++.+++..+... +..+..++..+ +...+....... .... .........+
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~---G~~v~~~~~~~------l~~~l~~a~~~~-~~~~-~~~~~~~~~d 166 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGYEAVRA---GIKVRFTTAAD------LLLQLSTAQRQG-RYKT-TLQRGVMAPR 166 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeHHH------HHHHHHHHHHCC-cHHH-HHHHHhcCCC
Confidence 34445689999999999999999999886321 22333332211 110110000000 0000 0000012346
Q ss_pred EEEEeCCCCC--CHHHHHHHHHHHHhhcCcceEEEEecCCcc---------------cchHhhccccEEEecCCC
Q 022641 158 IIILDEADSM--TEDAQNALRRTMETYSKVTRFFFICNYISR---------------IIEPLASRCAKFRFKPLS 215 (294)
Q Consensus 158 lliiDei~~l--~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~---------------~~~~l~~r~~~i~~~~~~ 215 (294)
+++|||++.. +....+.|+++++..+....+|+|||.+.. +.+++.+.+..|.|...+
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~s 241 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGES 241 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEEeecCCC
Confidence 9999999985 455667899999887777778999986532 223444455678877655
No 147
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.70 E-value=2.2e-15 Score=127.07 Aligned_cols=228 Identities=19% Similarity=0.132 Sum_probs=147.2
Q ss_pred CCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccC-CcceeecCCC------------
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK-SRVLELNASD------------ 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~-~~~~~~~~~~------------ 123 (294)
.+.|.+++|+++.+..|...+...+..+++|.|++|||||++++.+.+.+.+..... .+|. .++.+
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~~~~~~~ 91 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSDEVREAI 91 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhchhhhhhh
Confidence 347899999999999999998888877899999999999999999988875332111 1111 11100
Q ss_pred --------------------CcchhHHHHHHHHHHhhhccc-CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 022641 124 --------------------DRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (294)
Q Consensus 124 --------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~ 182 (294)
....+.+..-+........+. ....+....+.+++|++||++.+++..+..|++.+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~ 171 (350)
T CHL00081 92 QNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASG 171 (350)
T ss_pred cccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 000000000000000000000 01233344566789999999999999999999999762
Q ss_pred c-------------CcceEEEEecCCc-ccchHhhcccc-EEEecCCC-HHHHHHHHHHHHH------------------
Q 022641 183 S-------------KVTRFFFICNYIS-RIIEPLASRCA-KFRFKPLS-EEVMSSRVLHICN------------------ 228 (294)
Q Consensus 183 ~-------------~~~~ii~~~~~~~-~~~~~l~~r~~-~i~~~~~~-~~~~~~~l~~~~~------------------ 228 (294)
. ..+.++.+.|... .+.+++..||. .+.+..++ .+...+++++...
T Consensus 172 ~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T CHL00081 172 WNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEE 251 (350)
T ss_pred CeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhcccccc
Confidence 2 2222333334333 47889999998 78888887 4666666665321
Q ss_pred -----------HhCCCCCHHHHHHHHhhc---c-CcHHHHHHHHHHHHHHh----CCCCChhhhhhhcccccCCCC
Q 022641 229 -----------EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF----GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 229 -----------~~~~~~~~~~l~~l~~~~---~-G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~~~~ 285 (294)
-..+.++++.++++++.+ + -.+|..+.+++.+-..+ ...++.+||..+...+-.+..
T Consensus 252 ~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 252 LRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred CHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 023568899988888764 2 25888888777655555 567999999988776555533
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.70 E-value=5.9e-16 Score=145.77 Aligned_cols=194 Identities=23% Similarity=0.340 Sum_probs=135.3
Q ss_pred hhhcccHHHHHHHHHHHHcC-------CCC--cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHH
Q 022641 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
+.++||+.++..+.+.+... ..| .++|+||+|||||.+|+++++.++... ..++.++++.........
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~---~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE---QNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC---cceEEEeHHHhhhhhhhc
Confidence 47789999999888887531 122 389999999999999999999986432 244555544322111111
Q ss_pred HHHHHHHhhhccc-CccC-----CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecC
Q 022641 132 TKIKTFAAVAVGS-GQRR-----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (294)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~-----~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~ 194 (294)
..+ ..+.+. +... .......+.||+|||++.+++..++.|++++++.. .+..+|+|||.
T Consensus 643 ~l~----g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 643 RLK----GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred ccc----CCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 110 000000 0000 00112345799999999999999999999999765 56778899874
Q ss_pred Cc-----------------------------ccchHhhccccEEEecCCCHHHHHHHHHHHHHH-------h-C--CCCC
Q 022641 195 IS-----------------------------RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE-------E-G--LNLD 235 (294)
Q Consensus 195 ~~-----------------------------~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~-------~-~--~~~~ 235 (294)
.. .+.++|++|+.+|.|.|++.+++..++...+.. . + +.++
T Consensus 719 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~ 798 (852)
T TIGR03345 719 GSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYS 798 (852)
T ss_pred chHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEEC
Confidence 21 145788899999999999999999999887643 1 4 3589
Q ss_pred HHHHHHHHhhccC---cHHHHHHHHHHHH
Q 022641 236 AEALSTLSSISQG---DLRRAITYLQGAA 261 (294)
Q Consensus 236 ~~~l~~l~~~~~G---~~r~~~~~l~~~~ 261 (294)
+++++.|++.+.+ ..|.+.+.++...
T Consensus 799 d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 799 EALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 9999999999876 6888888887644
No 149
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6e-16 Score=137.74 Aligned_cols=213 Identities=23% Similarity=0.247 Sum_probs=143.2
Q ss_pred hhhhcCCCcchhhcccHHHHHHHHHHHHcC------------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCccee
Q 022641 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETA------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (294)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (294)
...+.-.-.|+++-|.++++..+++.+... +...|+||||||||||.+|+++|.++ ...|+.
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc------sL~FlS 735 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC------SLNFLS 735 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc------eeeEEe
Confidence 333444457899999999999998887541 12359999999999999999999998 667776
Q ss_pred ecCCC------CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH-------------HHHHHHHHHH
Q 022641 119 LNASD------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-------------DAQNALRRTM 179 (294)
Q Consensus 119 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~-------------~~~~~L~~~l 179 (294)
+.++. +.+..++++.+..... +.+.|||+||+|.+.+ +....|+.-|
T Consensus 736 VKGPELLNMYVGqSE~NVR~VFerAR~--------------A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAEL 801 (953)
T KOG0736|consen 736 VKGPELLNMYVGQSEENVREVFERARS--------------AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAEL 801 (953)
T ss_pred ecCHHHHHHHhcchHHHHHHHHHHhhc--------------cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHh
Confidence 65554 3345556666655433 3456999999999843 2456677666
Q ss_pred Hhhc----CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHhhc-----
Q 022641 180 ETYS----KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSIS----- 246 (294)
Q Consensus 180 ~~~~----~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~l~~~~----- 246 (294)
+... ..+-+|.+||.+..+++++++ ||. .+++.+....+-+..+-+.+.+ ...+++++ +..|++.|
T Consensus 802 Dgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr-kFkLdedVdL~eiAk~cp~~~T 880 (953)
T KOG0736|consen 802 DGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR-KFKLDEDVDLVEIAKKCPPNMT 880 (953)
T ss_pred hcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHH-HccCCCCcCHHHHHhhCCcCCc
Confidence 6544 355678889999999999987 898 6788888776666555444432 34455544 77778765
Q ss_pred cCcHHHHHHHHHHHH--HHh-----C-----------CCCChhhhhhhcccccCCC
Q 022641 247 QGDLRRAITYLQGAA--RLF-----G-----------SSITSKDLISVSGYPTGGS 284 (294)
Q Consensus 247 ~G~~r~~~~~l~~~~--~~~-----~-----------~~it~~~v~~~~~~~~~~~ 284 (294)
+.|+-.++.-.-.+| +.. + -.++++|+-+.+.+..+..
T Consensus 881 GADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 881 GADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 445544442221111 111 1 1278888888877766653
No 150
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.69 E-value=3.1e-15 Score=126.29 Aligned_cols=225 Identities=15% Similarity=0.102 Sum_probs=140.3
Q ss_pred cchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc-------CCCc---cCCcceeec--------
Q 022641 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-------GPEL---YKSRVLELN-------- 120 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~-------~~~~---~~~~~~~~~-------- 120 (294)
.|..++|+++++..|.-.+-.+...+++|.|++|+|||+++++++..+. ++.. ....+++.+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 4678999999999887777776666899999999999999999998772 1110 000000000
Q ss_pred --------------CCCCcchhHHHHHHHHHHhh-hcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc--
Q 022641 121 --------------ASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-- 183 (294)
Q Consensus 121 --------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-- 183 (294)
.......+.+...+.-.... ........+....+.+++|+|||++.+++..++.|++.+++..
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~ 161 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNV 161 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeE
Confidence 00000000110000000000 0001112333334567899999999999999999999997642
Q ss_pred -----------CcceEEEEecCCc-ccchHhhcccc-EEEecCCCH-HHHHHHHHHHHH---------------------
Q 022641 184 -----------KVTRFFFICNYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICN--------------------- 228 (294)
Q Consensus 184 -----------~~~~ii~~~~~~~-~~~~~l~~r~~-~i~~~~~~~-~~~~~~l~~~~~--------------------- 228 (294)
..+.++.+.|... .+.+++.+||. .+.+.++.. ++..+++++...
T Consensus 162 v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~ 241 (337)
T TIGR02030 162 VEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQA 241 (337)
T ss_pred EEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHH
Confidence 2233344444333 57889999998 678888865 666666665211
Q ss_pred --------HhCCCCCHHHHHHHHhhc---cC-cHHHHHHHHHHHHHHh----CCCCChhhhhhhcccccCC
Q 022641 229 --------EEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 229 --------~~~~~~~~~~l~~l~~~~---~G-~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~~ 283 (294)
-..+.++++.++++++.+ +. .+|..+.++..+..++ ...++.+||..++..+-.+
T Consensus 242 ~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 242 KIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred HHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 023558888888877753 33 4788888777665555 4579999999877654444
No 151
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.4e-16 Score=127.35 Aligned_cols=189 Identities=23% Similarity=0.220 Sum_probs=127.6
Q ss_pred CcchhhcccHHHHHHHHHHHHc--------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 58 KQVKDVAHQEEVVRVLTNTLET--------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
.+|.++-|.+.+++.+.+.+-- ....+++|+||||||||.+|++++++. +..++-+..+.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~ 162 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSN 162 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccc
Confidence 4678999999999888777532 122359999999999999999999999 88888888877
Q ss_pred CcchhHHH--HHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH-------HHHHH----HHHHHH----hhcCcc
Q 022641 124 DRGINVVR--TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-------DAQNA----LRRTME----TYSKVT 186 (294)
Q Consensus 124 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~-------~~~~~----L~~~l~----~~~~~~ 186 (294)
..+..... .....+...+. .-.+.+|+|||++.+-. +.... +...=+ .....+
T Consensus 163 lt~KWfgE~eKlv~AvFslAs----------Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rV 232 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLAS----------KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERV 232 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhh----------hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceE
Confidence 65533211 11111111111 11345999999997631 11111 111111 112235
Q ss_pred eEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcH-HHHHHHHHHHHHH
Q 022641 187 RFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDL-RRAITYLQGAARL 263 (294)
Q Consensus 187 ~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~-r~~~~~l~~~~~~ 263 (294)
.|+.+||.++.++.++.+|+. .++++-|+..++.+|++-+++.+.+. ++=.+..++..+.|-- +.+.+++..++.+
T Consensus 233 lVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~~ 310 (386)
T KOG0737|consen 233 LVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAALR 310 (386)
T ss_pred EEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhHh
Confidence 566778999999999999987 89999999999999999999988876 4445777888877743 3344444444433
No 152
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.69 E-value=2e-15 Score=128.05 Aligned_cols=205 Identities=18% Similarity=0.178 Sum_probs=135.7
Q ss_pred cccHHHHHHHHHHHHcC--CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhh
Q 022641 64 AHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141 (294)
Q Consensus 64 ~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (294)
+|....+..+.+.+..- ...+|+|+|++||||+++|+++.... .....+++.++|..... ..+...+.......
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s---~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS---KRWQGPLVKLNCAALSE-NLLDSELFGHEAGA 77 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc---CccCCCeEEEeCCCCCh-HHHHHHHhcccccc
Confidence 45554555444444332 22359999999999999999998654 22356889999886532 22221111100000
Q ss_pred -cc-cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCC-------cccchH
Q 022641 142 -VG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRIIEP 201 (294)
Q Consensus 142 -~~-~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~-------~~~~~~ 201 (294)
.+ .....+....+..+.|+|||++.|+...+..|+.+++... .++++|++++.. ..+.+.
T Consensus 78 ~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~d 157 (329)
T TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRAD 157 (329)
T ss_pred ccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHH
Confidence 00 0112233445667899999999999999999999997643 345788888643 234567
Q ss_pred hhcccc--EEEecCCC--HHHHHHHHHHHHH----HhC----CCCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHh-CCC
Q 022641 202 LASRCA--KFRFKPLS--EEVMSSRVLHICN----EEG----LNLDAEALSTLSSI-SQGDLRRAITYLQGAARLF-GSS 267 (294)
Q Consensus 202 l~~r~~--~i~~~~~~--~~~~~~~l~~~~~----~~~----~~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~-~~~ 267 (294)
|..|+. .|.++|+. .+++..++.+++. +.+ ..+++++++.|..+ +.||+|++.++++.++... +..
T Consensus 158 L~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~~~~ 237 (329)
T TIGR02974 158 LLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEE 237 (329)
T ss_pred HHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCc
Confidence 788885 68888887 4666666665543 323 35899999999998 5999999999999988765 334
Q ss_pred CChhh
Q 022641 268 ITSKD 272 (294)
Q Consensus 268 it~~~ 272 (294)
++.++
T Consensus 238 ~~~~~ 242 (329)
T TIGR02974 238 APIDE 242 (329)
T ss_pred cchhh
Confidence 55554
No 153
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.7e-16 Score=138.49 Aligned_cols=205 Identities=22% Similarity=0.201 Sum_probs=148.8
Q ss_pred CcchhhcccHHHHHHHHHHH---HcC---------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC--
Q 022641 58 KQVKDVAHQEEVVRVLTNTL---ETA---------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-- 123 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l---~~~---------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~-- 123 (294)
..|.++.|.+++++.+.+.+ ..+ -+..++++||||||||.||++++-++ +.+++.+++++
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA------~VPFf~iSGS~FV 220 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDFV 220 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc------CCCceeccchhhh
Confidence 57889999999988776665 322 12349999999999999999999999 78888887765
Q ss_pred ----CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhhcC-
Q 022641 124 ----DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYSK- 184 (294)
Q Consensus 124 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~~~- 184 (294)
..+...+++.+....... +++|+|||+|.+.. ...+.|+.-++.+..
T Consensus 221 emfVGvGAsRVRdLF~qAkk~a--------------P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKNA--------------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhccC--------------CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 345566777766655443 24999999998742 256777777777663
Q ss_pred -cceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCc-HHHHHHHHHH
Q 022641 185 -VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQG 259 (294)
Q Consensus 185 -~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~-~r~~~~~l~~ 259 (294)
.+.++.+||.+.-+++++++ ||. .|.++.|+...+.++++-+++...+. .+-.+..+++.+.|- --...|++..
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHH
Confidence 45566677888888899987 776 78999999999999998666544333 222255588887663 3345566666
Q ss_pred HHHHh----CCCCChhhhhhhcccccCC
Q 022641 260 AARLF----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 260 ~~~~~----~~~it~~~v~~~~~~~~~~ 283 (294)
++..+ ...|++.++.++.......
T Consensus 366 Aal~aar~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 366 AALLAARRNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred HHHHHHHhcCeeEeccchHHHHHHHhcC
Confidence 66665 5569999998887775444
No 154
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.3e-16 Score=121.26 Aligned_cols=205 Identities=20% Similarity=0.260 Sum_probs=134.8
Q ss_pred cchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC-
Q 022641 59 QVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~- 124 (294)
.+.++-|.++.++.|.+++-- ..+..+++|||||||||.+|++.+.+. ...|..+.++..
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT------~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT------NATFLKLAGPQLV 242 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc------cchHHHhcchHHH
Confidence 567888999999888877632 223359999999999999999999987 455554443321
Q ss_pred -----cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHH---Hhhc--
Q 022641 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTM---ETYS-- 183 (294)
Q Consensus 125 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l---~~~~-- 183 (294)
.+...+++.+.-... ..+.+|||||+|.+. .+++...+.++ +.++
T Consensus 243 QMfIGdGAkLVRDAFaLAKE--------------kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKE--------------KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred hhhhcchHHHHHHHHHHhhc--------------cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc
Confidence 122333333322211 234599999999873 23444444444 4444
Q ss_pred CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC-cHHHHHHHHHH
Q 022641 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQG 259 (294)
Q Consensus 184 ~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G-~~r~~~~~l~~ 259 (294)
..+.+|.+||...-++|++++ |.. .|+|+.|+.+.+..+++-...+..+. ++-.++.+++.+++ |-.++--.+-.
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcVE 387 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCVE 387 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeehh
Confidence 356789999999999999987 554 79999999988888887766554432 33347788877643 33444444444
Q ss_pred HHHHh----CCCCChhhhhhhcccccCCC
Q 022641 260 AARLF----GSSITSKDLISVSGYPTGGS 284 (294)
Q Consensus 260 ~~~~~----~~~it~~~v~~~~~~~~~~~ 284 (294)
+...+ ..+++.+++.+.+.++....
T Consensus 388 AGMiALRr~atev~heDfmegI~eVqakK 416 (424)
T KOG0652|consen 388 AGMIALRRGATEVTHEDFMEGILEVQAKK 416 (424)
T ss_pred hhHHHHhcccccccHHHHHHHHHHHHHhh
Confidence 44444 45689898877766655443
No 155
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.68 E-value=5.1e-16 Score=143.64 Aligned_cols=176 Identities=22% Similarity=0.294 Sum_probs=123.4
Q ss_pred hhhcccHHHHHHHHHHHHcC-------CC--CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHH
Q 022641 61 KDVAHQEEVVRVLTNTLETA-------NC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
..++||+.++..+...+... .. .+++|+||||||||.+|+.+|+.+ +.+++.++++.........
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l------~~~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVS 531 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh------CCCcEEeechhhcccccHH
Confidence 35789999999998888631 11 249999999999999999999998 5667777765543322222
Q ss_pred HHHHHHHhhhcccC-ccCCC-----CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecC
Q 022641 132 TKIKTFAAVAVGSG-QRRGG-----YPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (294)
Q Consensus 132 ~~~~~~~~~~~~~~-~~~~~-----~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~ 194 (294)
..+. .+.+.. ...++ .....+++|+|||++.+++..++.|++++++.. .++.+|+|||.
T Consensus 532 ~LiG----~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 532 RLIG----APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred HHcC----CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 1111 110000 00000 012345799999999999999999999998542 34558888873
Q ss_pred C-------------------------cccchHhhcccc-EEEecCCCHHHHHHHHHHHHH-------HhCC--CCCHHHH
Q 022641 195 I-------------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEGL--NLDAEAL 239 (294)
Q Consensus 195 ~-------------------------~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~-------~~~~--~~~~~~l 239 (294)
. ..+.|+|++|+. ++.|+|++.+++..++...+. ..++ .++++++
T Consensus 608 g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~ 687 (758)
T PRK11034 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEAR 687 (758)
T ss_pred CHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHH
Confidence 2 124588999997 899999999999999887654 2344 4799999
Q ss_pred HHHHhhc
Q 022641 240 STLSSIS 246 (294)
Q Consensus 240 ~~l~~~~ 246 (294)
+.|++..
T Consensus 688 ~~l~~~~ 694 (758)
T PRK11034 688 DWLAEKG 694 (758)
T ss_pred HHHHHhC
Confidence 9999763
No 156
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.67 E-value=7.7e-15 Score=116.03 Aligned_cols=190 Identities=20% Similarity=0.254 Sum_probs=134.3
Q ss_pred hhcCCCcchhhcccHHHHHHHHHH----HHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchh
Q 022641 53 EKYRPKQVKDVAHQEEVVRVLTNT----LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (294)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~l~~~----l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (294)
+...+..+++++|.+..++.|.+- +......|++|+|++|||||++++++..++... +..++++...+.....
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~---GLRlIev~k~~L~~l~ 95 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ---GLRLIEVSKEDLGDLP 95 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc---CceEEEECHHHhccHH
Confidence 556678899999988888766543 444445679999999999999999999987433 3667777666655555
Q ss_pred HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-HHHHHHHHHHHH----hhcCcceEEEEecCCcccc----
Q 022641 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTME----TYSKVTRFFFICNYISRII---- 199 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-~~~~~~L~~~l~----~~~~~~~ii~~~~~~~~~~---- 199 (294)
.+...+.. . ..+-||++||+..=. ...-..|..+|+ ..+.++.+..|+|..+.+.
T Consensus 96 ~l~~~l~~---~-------------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~ 159 (249)
T PF05673_consen 96 ELLDLLRD---R-------------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFS 159 (249)
T ss_pred HHHHHHhc---C-------------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhh
Confidence 44444332 1 113499999976432 233455666665 5667888888887544322
Q ss_pred -------------------hHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-----HHHHHhhccCcHHHHH
Q 022641 200 -------------------EPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-----LSTLSSISQGDLRRAI 254 (294)
Q Consensus 200 -------------------~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----l~~l~~~~~G~~r~~~ 254 (294)
-+|..||. .+.|.|++.++..++++.++...|+.++++. ++......+.+.|.|.
T Consensus 160 d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~ 239 (249)
T PF05673_consen 160 DREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTAR 239 (249)
T ss_pred hccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 13456787 8999999999999999999999999999644 4444445556788888
Q ss_pred HHHHHHH
Q 022641 255 TYLQGAA 261 (294)
Q Consensus 255 ~~l~~~~ 261 (294)
+.+...+
T Consensus 240 QF~~~l~ 246 (249)
T PF05673_consen 240 QFIDDLA 246 (249)
T ss_pred HHHHHHh
Confidence 7776554
No 157
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.67 E-value=8.3e-15 Score=126.71 Aligned_cols=213 Identities=23% Similarity=0.240 Sum_probs=151.1
Q ss_pred CcchhhcccHHHHHHHHHHHHcCCC--CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHH-HH
Q 022641 58 KQVKDVAHQEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-KI 134 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 134 (294)
....+++|+...+..+.+.+..-.. -+++|+|++||||-.+|++|.+.- ...+.+|+.+||..... ..+.. ++
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S---~R~~~PFVavNcaAip~-~l~ESELF 213 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQAS---PRAKGPFIAVNCAAIPE-NLLESELF 213 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhC---cccCCCceeeecccCCH-HHHHHHhh
Confidence 3567899999999988888865433 359999999999999999998753 44467999999988643 22222 22
Q ss_pred HHHHhhhcccCc-cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc------
Q 022641 135 KTFAAVAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------ 196 (294)
Q Consensus 135 ~~~~~~~~~~~~-~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~------ 196 (294)
..-.....+... +.+....+..+.||||||..++...|..|+.++++.. .+++||.+||..-
T Consensus 214 GhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~ 293 (464)
T COG2204 214 GHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAA 293 (464)
T ss_pred cccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHc
Confidence 222211122222 3445556788999999999999999999999998533 3566888887542
Q ss_pred -ccchHhhccccE--EEecCCCH--HHHH----HHHHHHHHHhCC---CCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHH
Q 022641 197 -RIIEPLASRCAK--FRFKPLSE--EVMS----SRVLHICNEEGL---NLDAEALSTLSSI-SQGDLRRAITYLQGAARL 263 (294)
Q Consensus 197 -~~~~~l~~r~~~--i~~~~~~~--~~~~----~~l~~~~~~~~~---~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~ 263 (294)
.....|..|+.+ |.++|+.+ +++- .++++.++..+. .+++++++.|..+ +.||+|++.|.++.++..
T Consensus 294 G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il 373 (464)
T COG2204 294 GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVIL 373 (464)
T ss_pred CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence 245667778875 55555542 3444 444445555543 5899999999988 799999999999988877
Q ss_pred h-CCCCChhhhh
Q 022641 264 F-GSSITSKDLI 274 (294)
Q Consensus 264 ~-~~~it~~~v~ 274 (294)
. +..|+.+++.
T Consensus 374 ~~~~~i~~~~l~ 385 (464)
T COG2204 374 SEGPEIEVEDLP 385 (464)
T ss_pred CCccccchhhcc
Confidence 6 4557777765
No 158
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.67 E-value=3.1e-15 Score=127.12 Aligned_cols=213 Identities=18% Similarity=0.203 Sum_probs=145.2
Q ss_pred cCCCcchhhcccHHHHHHHHHHHHcCC--CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHH
Q 022641 55 YRPKQVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (294)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~~~--~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (294)
.....+.+++|.......+++-+.... ..+++++|++||||+.+|+.|...- +.....+++.+||..........+
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s--~r~~~~PFI~~NCa~~~en~~~~e 149 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALS--ARRAEAPFIAFNCAAYSENLQEAE 149 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhh--hcccCCCEEEEEHHHhCcCHHHHH
Confidence 334567899998777777777665532 2359999999999999999998332 222578999999987655433333
Q ss_pred HHHHHHhhhcc-cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-----------hcCcceEEEEecCC--ccc
Q 022641 133 KIKTFAAVAVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET-----------YSKVTRFFFICNYI--SRI 198 (294)
Q Consensus 133 ~~~~~~~~~~~-~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~-----------~~~~~~ii~~~~~~--~~~ 198 (294)
.+........+ ...+.+....+..+.|++||++.+++..+..|+.++++ .+..+++|++|+.. ..+
T Consensus 150 LFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~ 229 (403)
T COG1221 150 LFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAV 229 (403)
T ss_pred HhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHH
Confidence 22222222222 22244445567788999999999999999999999986 34567788887643 334
Q ss_pred ch--Hhhcccc--EEEecCCCH--HHHHHHHHH----HHHHhCCC---CCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHh
Q 022641 199 IE--PLASRCA--KFRFKPLSE--EVMSSRVLH----ICNEEGLN---LDAEALSTLSSI-SQGDLRRAITYLQGAARLF 264 (294)
Q Consensus 199 ~~--~l~~r~~--~i~~~~~~~--~~~~~~l~~----~~~~~~~~---~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~ 264 (294)
.. .+.+|+. .|+++|+.. .++..++.+ .+.+.+.+ .+++++..+..+ +.||+|++.|++++++...
T Consensus 230 ~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 230 LAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 44 5666544 788888764 444444444 44444544 345778887777 6999999999999999877
Q ss_pred -CCCCC
Q 022641 265 -GSSIT 269 (294)
Q Consensus 265 -~~~it 269 (294)
...++
T Consensus 310 ~~~~~~ 315 (403)
T COG1221 310 SGEGQD 315 (403)
T ss_pred ccccCC
Confidence 33344
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.66 E-value=9.7e-16 Score=113.40 Aligned_cols=109 Identities=28% Similarity=0.341 Sum_probs=81.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc------chhHHHHHHHHHHhhhcccCccCCCCCCCCcEE
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (294)
++|+||||||||++++.+++.+ +.+++.+++.... ....+...+....... ++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA-------------KPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS-------------TSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc------ccccccccccccccccccccccccccccccccccc-------------ccee
Confidence 6899999999999999999998 7778888876543 1223333333322211 2469
Q ss_pred EEEeCCCCCCHHH-----------HHHHHHHHHhhcC---cceEEEEecCCcccchHhh-cccc-EEEec
Q 022641 159 IILDEADSMTEDA-----------QNALRRTMETYSK---VTRFFFICNYISRIIEPLA-SRCA-KFRFK 212 (294)
Q Consensus 159 liiDei~~l~~~~-----------~~~L~~~l~~~~~---~~~ii~~~~~~~~~~~~l~-~r~~-~i~~~ 212 (294)
|+|||+|.+.... .+.|+..++.... ...+|++||....+++++. +||. .+.++
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 9999999997664 6788888887665 4789999999999999999 9998 56653
No 160
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-15 Score=129.85 Aligned_cols=180 Identities=22% Similarity=0.220 Sum_probs=130.1
Q ss_pred hhcCCCcchhhcccHHHHHHHHHHHHcC------------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 53 EKYRPKQVKDVAHQEEVVRVLTNTLETA------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
....+..|+++.|.+.++..+...+--+ ....+++.||||+|||.|++++|.+. ...++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~------~atff~iS 218 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES------GATFFNIS 218 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh------cceEeecc
Confidence 3455667889999888887776654321 11249999999999999999999998 78888888
Q ss_pred CCCCcchhHH--HHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH-----------H-HHHHHHHHHH---hhc
Q 022641 121 ASDDRGINVV--RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------D-AQNALRRTME---TYS 183 (294)
Q Consensus 121 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~-----------~-~~~~L~~~l~---~~~ 183 (294)
+++..+...- ...+..+.... ...++.++||||+|.+-. . ..+.|++..- ...
T Consensus 219 assLtsK~~Ge~eK~vralf~vA----------r~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~ 288 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVA----------RSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPD 288 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHH----------HhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCC
Confidence 7765543321 12222221111 122346999999998721 1 2334444442 223
Q ss_pred CcceEEEEecCCcccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC
Q 022641 184 KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248 (294)
Q Consensus 184 ~~~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G 248 (294)
..+.+|.+||.++.+++++++||+ ++.++.|+.+.+..++.+.+...+-.+.+..+..|++.+.|
T Consensus 289 drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 289 DRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred CeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 467788889999999999999998 78899999999999999999988777889999999988654
No 161
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.66 E-value=1.2e-14 Score=123.43 Aligned_cols=211 Identities=18% Similarity=0.174 Sum_probs=140.2
Q ss_pred cchhhcccHHHHHHHHHHHHcC--CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHH
Q 022641 59 QVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
.+++++|....+..+.+.+..- ...+|+|+|++||||+++|+++...- .....+++.++|..... ..+...+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s---~r~~~pfv~v~c~~~~~-~~~~~~lfg 79 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS---SRWQGPFISLNCAALNE-NLLDSELFG 79 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC---CccCCCeEEEeCCCCCH-HHHHHHHcc
Confidence 3456888877777666665442 23459999999999999999997543 22356888899887532 222221111
Q ss_pred HHhh-hcc-cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCC-------c
Q 022641 137 FAAV-AVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (294)
Q Consensus 137 ~~~~-~~~-~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~-------~ 196 (294)
.... ..+ .....+....+..+.|+|||++.|+...+..|+.+++... ..+++|++++.. .
T Consensus 80 ~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g 159 (326)
T PRK11608 80 HEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEG 159 (326)
T ss_pred ccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcC
Confidence 0000 000 0011223344567899999999999999999999997533 236777777643 2
Q ss_pred ccchHhhcccc--EEEecCCCH--HHHHHHHHHHH----HHhC----CCCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHH
Q 022641 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEG----LNLDAEALSTLSSI-SQGDLRRAITYLQGAARL 263 (294)
Q Consensus 197 ~~~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~----~~~~----~~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~ 263 (294)
.+.+.+..|+. .|.++|+.. +++..++.+++ ...+ ..+++++++.|..+ +.||+|++.++++.++..
T Consensus 160 ~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 160 KFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 34567788875 688888864 45666665544 3333 35899999999988 799999999999998875
Q ss_pred h-CCCCChhhh
Q 022641 264 F-GSSITSKDL 273 (294)
Q Consensus 264 ~-~~~it~~~v 273 (294)
. +..++.+++
T Consensus 240 ~~~~~~~~~~l 250 (326)
T PRK11608 240 HGTSEYPLDNI 250 (326)
T ss_pred cCCCCCchhhc
Confidence 5 334544443
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.4e-15 Score=136.71 Aligned_cols=193 Identities=28% Similarity=0.363 Sum_probs=137.3
Q ss_pred hhhcccHHHHHHHHHHHHcC-------CCC--cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHH
Q 022641 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
..++||++++..+.+.+... +.| .++|.||+|||||-||++||..+++.+ ..++.++++.-.....+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e---~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE---QALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC---ccceeechHHHHHHHHHH
Confidence 46789999999998888642 222 399999999999999999999996542 566677776654444333
Q ss_pred HHHHHHHhhhcccCc------cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecC
Q 022641 132 TKIKTFAAVAVGSGQ------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (294)
Q Consensus 132 ~~~~~~~~~~~~~~~------~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~ 194 (294)
.+...+.+.-. -........+.||++||+++.+++..+.|++++++.. .++.+|+|||.
T Consensus 568 ----rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 568 ----RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred ----HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 33333332211 1112234567899999999999999999999998543 35668888863
Q ss_pred Ccc----------------------------cchHhhcccc-EEEecCCCHHHHHHHHHHHHHH-------hCC--CCCH
Q 022641 195 ISR----------------------------IIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE-------EGL--NLDA 236 (294)
Q Consensus 195 ~~~----------------------------~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~~--~~~~ 236 (294)
... ..|+|++|+. +|.|.|++.+.+..++...+.. .++ .+++
T Consensus 644 Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~ 723 (786)
T COG0542 644 GSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSD 723 (786)
T ss_pred chHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECH
Confidence 211 3578889998 9999999999999988876642 343 4799
Q ss_pred HHHHHHHhhcc---CcHHHHHHHHHHH
Q 022641 237 EALSTLSSISQ---GDLRRAITYLQGA 260 (294)
Q Consensus 237 ~~l~~l~~~~~---G~~r~~~~~l~~~ 260 (294)
++...|++.+. ..-|-+.+.++..
T Consensus 724 ~a~~~l~~~gyd~~~GARpL~R~Iq~~ 750 (786)
T COG0542 724 EAKDFLAEKGYDPEYGARPLRRAIQQE 750 (786)
T ss_pred HHHHHHHHhccCCCcCchHHHHHHHHH
Confidence 99999998753 2245555555543
No 163
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.65 E-value=1.4e-14 Score=129.37 Aligned_cols=217 Identities=18% Similarity=0.169 Sum_probs=147.3
Q ss_pred CCcchhhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHH
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (294)
...|++++|....+..+.+.+.. ....+++|+|++||||+++|+.+.+.- .....+++.++|..... ..+...+
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S---~r~~~pfv~inC~~l~e-~lleseL 283 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS---GRRDFPFVAINCGAIAE-SLLEAEL 283 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc---CcCCCCEEEeccccCCh-hHHHHHh
Confidence 35678899998888877777643 333469999999999999999998653 23367899999887542 2222211
Q ss_pred HHHHhhhccc---CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc----
Q 022641 135 KTFAAVAVGS---GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS---- 196 (294)
Q Consensus 135 ~~~~~~~~~~---~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~---- 196 (294)
.......... ....+....+..+.|||||++.|+...+..|+..+++.. .++++|++++...
T Consensus 284 FG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v 363 (526)
T TIGR02329 284 FGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAV 363 (526)
T ss_pred cCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHh
Confidence 1111000000 012222334567899999999999999999999997633 2346888876542
Q ss_pred ---ccchHhhcccc--EEEecCCCH--HHHHHHHHHHHH----HhCCCCCHHHHHH-------HHhh-ccCcHHHHHHHH
Q 022641 197 ---RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEGLNLDAEALST-------LSSI-SQGDLRRAITYL 257 (294)
Q Consensus 197 ---~~~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~~~~~~~~l~~-------l~~~-~~G~~r~~~~~l 257 (294)
.+...+..|+. .|.++|+.. +++..++.+++. ..++.+++++++. |..+ ++||+|++.+++
T Consensus 364 ~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvi 443 (526)
T TIGR02329 364 QQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLV 443 (526)
T ss_pred hhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHH
Confidence 23345666665 678888864 566665555554 3456789999887 7766 799999999999
Q ss_pred HHHHHHh----CCCCChhhhhhhc
Q 022641 258 QGAARLF----GSSITSKDLISVS 277 (294)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~ 277 (294)
+.++... +..|+.+++....
T Consensus 444 er~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 444 ERLALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred HHHHHhcccCCCCccCHHHhhhhc
Confidence 9988753 3568888875443
No 164
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.65 E-value=3.8e-15 Score=129.12 Aligned_cols=173 Identities=21% Similarity=0.236 Sum_probs=112.5
Q ss_pred hhhcccHHHHHHHHHHHHcC----------------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 61 KDVAHQEEVVRVLTNTLETA----------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~----------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
+.++|++.+++.+...+.+. ...+++|+||||||||++|+++++.+ +.+++.++++..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l------~~pf~~id~~~l 144 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL------DVPFAIADATTL 144 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh------CCCceecchhhc
Confidence 35789999999886665321 13569999999999999999999988 667776666542
Q ss_pred cch----hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhhc---
Q 022641 125 RGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS--- 183 (294)
Q Consensus 125 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~~--- 183 (294)
... ......+......... ......+++|+|||+|.++. ..++.|+++|+...
T Consensus 145 ~~~gyvG~d~e~~l~~l~~~~~~------~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v 218 (412)
T PRK05342 145 TEAGYVGEDVENILLKLLQAADY------DVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASV 218 (412)
T ss_pred ccCCcccchHHHHHHHHHHhccc------cHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEe
Confidence 211 1122222222111100 01113456999999999964 37899999997421
Q ss_pred ----------CcceEEEEecCCc----------------------------------------------------ccchH
Q 022641 184 ----------KVTRFFFICNYIS----------------------------------------------------RIIEP 201 (294)
Q Consensus 184 ----------~~~~ii~~~~~~~----------------------------------------------------~~~~~ 201 (294)
....+|.|+|-.+ .+.|+
T Consensus 219 ~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PE 298 (412)
T PRK05342 219 PPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPE 298 (412)
T ss_pred CCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHH
Confidence 1122333332200 13578
Q ss_pred hhcccc-EEEecCCCHHHHHHHHHH----H-------HHHhCC--CCCHHHHHHHHhh
Q 022641 202 LASRCA-KFRFKPLSEEVMSSRVLH----I-------CNEEGL--NLDAEALSTLSSI 245 (294)
Q Consensus 202 l~~r~~-~i~~~~~~~~~~~~~l~~----~-------~~~~~~--~~~~~~l~~l~~~ 245 (294)
|+.|+. ++.|.|++.+++..++.. . +...++ .++++++..|++.
T Consensus 299 flgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~ 356 (412)
T PRK05342 299 FIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKK 356 (412)
T ss_pred HhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHh
Confidence 888987 789999999999999872 2 233444 4899999999986
No 165
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.65 E-value=6.2e-15 Score=127.93 Aligned_cols=214 Identities=15% Similarity=0.108 Sum_probs=128.9
Q ss_pred chhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH--HHHH
Q 022641 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK--IKTF 137 (294)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 137 (294)
-..++|++++++.+..++..+. +++|.||||||||++|++++....... ++....+...... .+... +...
T Consensus 19 ~~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~----~F~~~~~~fttp~-DLfG~l~i~~~ 91 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR----AFEYLMTRFSTPE-EVFGPLSIQAL 91 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccC----cceeeeeeecCcH-HhcCcHHHhhh
Confidence 3578899999999998888776 799999999999999999999873221 1222211110011 11000 0100
Q ss_pred HhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc---------CcceE-EEEecCCc---ccchHhhc
Q 022641 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---------KVTRF-FFICNYIS---RIIEPLAS 204 (294)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~---------~~~~i-i~~~~~~~---~~~~~l~~ 204 (294)
.....-.....+ ......+|++||++.+++..++.|+..|++.. -+.++ ++++|... ....++..
T Consensus 92 ~~~g~f~r~~~G--~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D 169 (498)
T PRK13531 92 KDEGRYQRLTSG--YLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD 169 (498)
T ss_pred hhcCchhhhcCC--ccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh
Confidence 000000000011 11123499999999999999999999997544 12234 44455322 13358999
Q ss_pred ccc-EEEecCCC-HHHHHHHHHHHHH-----------------------HhCCCCCHHHHHHHHhhc------c----Cc
Q 022641 205 RCA-KFRFKPLS-EEVMSSRVLHICN-----------------------EEGLNLDAEALSTLSSIS------Q----GD 249 (294)
Q Consensus 205 r~~-~i~~~~~~-~~~~~~~l~~~~~-----------------------~~~~~~~~~~l~~l~~~~------~----G~ 249 (294)
||. .+.+++++ .++...++..... -..+.+++.+++++.+.. . -+
T Consensus 170 RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~S 249 (498)
T PRK13531 170 RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVS 249 (498)
T ss_pred hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcC
Confidence 997 68888997 4555667654211 023456777777776552 1 36
Q ss_pred HHHHHHHHHHHHHHh----CCCCChhhhhhhcccccCC
Q 022641 250 LRRAITYLQGAARLF----GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 250 ~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~~ 283 (294)
+|..+.++..+...+ +..++.+|+. ++..+--+
T Consensus 250 pR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 250 DRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 787777666544444 5569999998 65554433
No 166
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8.9e-15 Score=129.37 Aligned_cols=184 Identities=22% Similarity=0.197 Sum_probs=133.2
Q ss_pred cchhhcccHHHHHHHHHHHHcCC-------------CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC-
Q 022641 59 QVKDVAHQEEVVRVLTNTLETAN-------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~-------------~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~- 124 (294)
.|+++-|..+++..|.+.+..+. ..+++|+||||||||.||.+++... ...++.+.++..
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~------~~~fisvKGPElL 738 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS------NLRFISVKGPELL 738 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC------CeeEEEecCHHHH
Confidence 57788888888888887775421 1249999999999999999999987 777887776543
Q ss_pred -----cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhhc--Ccc
Q 022641 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS--KVT 186 (294)
Q Consensus 125 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~~--~~~ 186 (294)
.+...++..+..... +++.+||+||+|.+. .++.+.|+..|+... ..+
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~--------------a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQS--------------AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred HHHhcccHHHHHHHHHHhhc--------------cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 233445555554333 345799999999884 347888988887533 345
Q ss_pred eEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccC----cHHHHHHHHHH
Q 022641 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----DLRRAITYLQG 259 (294)
Q Consensus 187 ~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G----~~r~~~~~l~~ 259 (294)
.++.+|..+..+++++++ |+. .+..++|+..++.++++......-. -++-.++.++..+.| |+..++...+.
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 566667888899999987 776 6788888999999999876643222 244557888887654 77777777776
Q ss_pred HHHH
Q 022641 260 AARL 263 (294)
Q Consensus 260 ~~~~ 263 (294)
++..
T Consensus 884 ~avh 887 (952)
T KOG0735|consen 884 AAVH 887 (952)
T ss_pred HHHH
Confidence 6644
No 167
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=1.2e-14 Score=116.72 Aligned_cols=159 Identities=13% Similarity=0.159 Sum_probs=116.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccC----------------CcceeecCC-CCcchhHHHHHHHHHHhhhcccCc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYK----------------SRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQ 146 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 146 (294)
.++|+||.|+||..+|.++++.+.|....+ ..+..+... .....+.+++....+.....
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~---- 84 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV---- 84 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch----
Confidence 389999999999999999999998864221 122222211 12345555555444332211
Q ss_pred cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEecCC----------CH
Q 022641 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL----------SE 216 (294)
Q Consensus 147 ~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~----------~~ 216 (294)
..+.+.|+||+++++++..+.+.|++.+|+++.++.+|++|+.+..+++.++|||+.+.++++ +.
T Consensus 85 -----e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~ 159 (261)
T PRK05818 85 -----ESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESND 159 (261)
T ss_pred -----hcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccCh
Confidence 113467999999999999999999999999999999999999999999999999999999887 44
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHH
Q 022641 217 EVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (294)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~ 260 (294)
.++.+.+.. ...+++ .++...+|+...++.+++..
T Consensus 160 ~~i~~~L~~-----~~~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 160 RYFQYILLS-----FYSVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred HHHHHHHHH-----ccCccH----HHHHHcCCCHHHHHHHHHHH
Confidence 444444321 122444 66777899999999988854
No 168
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.64 E-value=7.8e-15 Score=137.26 Aligned_cols=189 Identities=24% Similarity=0.328 Sum_probs=128.4
Q ss_pred hhhcccHHHHHHHHHHHHcC-------CCC--cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHH
Q 022641 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
+.++||+.+++.+...+... ..+ +++|+||+|||||.+|+++++.+ ...++.++++.........
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKHTVS 527 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcccHH
Confidence 46789999999988887642 112 48999999999999999999998 4556666655432222111
Q ss_pred HHHHHHHhhhccc-CccC-----CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecC
Q 022641 132 TKIKTFAAVAVGS-GQRR-----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (294)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~-----~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~ 194 (294)
..+.. +.+. +... .......+.+|+|||++.+++..++.|++++++.. .++.+|+|||.
T Consensus 528 ~lig~----~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~ 603 (731)
T TIGR02639 528 RLIGA----PPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNA 603 (731)
T ss_pred HHhcC----CCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCc
Confidence 11111 0000 0000 00012345799999999999999999999998642 34568888865
Q ss_pred Cc-------------------------ccchHhhcccc-EEEecCCCHHHHHHHHHHHHHH-------hC--CCCCHHHH
Q 022641 195 IS-------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE-------EG--LNLDAEAL 239 (294)
Q Consensus 195 ~~-------------------------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~l 239 (294)
.. .+.++|++|+. ++.|.|++.+++..+++..+.. .+ +.++++++
T Consensus 604 g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~ 683 (731)
T TIGR02639 604 GASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAK 683 (731)
T ss_pred chhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHH
Confidence 31 14578889997 8999999999999999988753 22 56899999
Q ss_pred HHHHhhc---cCcHHHHHHHHHH
Q 022641 240 STLSSIS---QGDLRRAITYLQG 259 (294)
Q Consensus 240 ~~l~~~~---~G~~r~~~~~l~~ 259 (294)
+.|++.+ .-..|.+...++.
T Consensus 684 ~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 684 KYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHHHHhCCCcccCchHHHHHHHH
Confidence 9999863 1234555555544
No 169
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.1e-15 Score=126.68 Aligned_cols=153 Identities=17% Similarity=0.223 Sum_probs=115.1
Q ss_pred cCCCcchhhcccHHHHHHHHHHH----Hc---------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecC
Q 022641 55 YRPKQVKDVAHQEEVVRVLTNTL----ET---------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (294)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l----~~---------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (294)
-.|.+|+.++-.++.++.+.+-+ .. ...+..||+||||||||+++.|+|+.+ +..++.++.
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L------~ydIydLeL 268 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL------NYDIYDLEL 268 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc------CCceEEeee
Confidence 34567888887766665554433 22 123569999999999999999999999 889999988
Q ss_pred CCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH------------------HHHHHHHHHHHhhc
Q 022641 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------------DAQNALRRTMETYS 183 (294)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~------------------~~~~~L~~~l~~~~ 183 (294)
+.......++.++.... .+.||+|+|||.--. -....|+..++..-
T Consensus 269 t~v~~n~dLr~LL~~t~----------------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw 332 (457)
T KOG0743|consen 269 TEVKLDSDLRHLLLATP----------------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW 332 (457)
T ss_pred ccccCcHHHHHHHHhCC----------------CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccc
Confidence 87777666766655432 235999999997510 13456888887544
Q ss_pred C----cceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHH
Q 022641 184 K----VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNE 229 (294)
Q Consensus 184 ~----~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~ 229 (294)
. ...+|+|||....++|+|++ |.. .|++...+.+..+.+..+++..
T Consensus 333 Sscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 333 SSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred ccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 3 45789999999999999998 665 7999999999999888887753
No 170
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.64 E-value=1.8e-14 Score=128.68 Aligned_cols=216 Identities=19% Similarity=0.203 Sum_probs=144.3
Q ss_pred CcchhhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhc---C--CCccCCcceeecCCCCcchhHH
Q 022641 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLF---G--PELYKSRVLELNASDDRGINVV 130 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~---~--~~~~~~~~~~~~~~~~~~~~~~ 130 (294)
..|++++|....+..+.+.+.. ....+++|+|++||||+.+|+++.+.+. . +.....+|+.++|..... ..+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhH
Confidence 4578899998888888777653 3334699999999999999999988731 0 233467899999987542 222
Q ss_pred HHHHHHHHhhhccc---CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc
Q 022641 131 RTKIKTFAAVAVGS---GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS 196 (294)
Q Consensus 131 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~ 196 (294)
...+.......... ..+.+....+..+.|||||++.|+...+..|+..+++.. .++++|++|+..-
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L 374 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL 374 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH
Confidence 22211111100001 112233345667899999999999999999999998632 2347888876542
Q ss_pred -------ccchHhhcccc--EEEecCCCH--HHHHHHHHHHHHH----hCCCCCHHHH-------HHHHhh-ccCcHHHH
Q 022641 197 -------RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICNE----EGLNLDAEAL-------STLSSI-SQGDLRRA 253 (294)
Q Consensus 197 -------~~~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~~----~~~~~~~~~l-------~~l~~~-~~G~~r~~ 253 (294)
.+...+..|+. .|.++|+.. +++..++.+++.+ .+..++++++ +.|..+ ++||+|++
T Consensus 375 ~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 375 EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 13345666665 677777764 5666666666654 4566787776 455555 79999999
Q ss_pred HHHHHHHHHHhC----CCCChhhhh
Q 022641 254 ITYLQGAARLFG----SSITSKDLI 274 (294)
Q Consensus 254 ~~~l~~~~~~~~----~~it~~~v~ 274 (294)
.|+++.++.+.. ..|+.+++.
T Consensus 455 ~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 455 RNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHHHHHhcCCCCcCccCHHHhh
Confidence 999999887653 346665553
No 171
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.64 E-value=1.3e-14 Score=136.12 Aligned_cols=174 Identities=19% Similarity=0.230 Sum_probs=122.2
Q ss_pred CCCcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
....|+++.|.+..+..+.+++.. ....+++|+||||||||++++++++++ +..++.+++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~ 246 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGP 246 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecH
Confidence 345788999999999888887642 123469999999999999999999998 5666777654
Q ss_pred CCcc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhhcC-
Q 022641 123 DDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSK- 184 (294)
Q Consensus 123 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~~~- 184 (294)
...+ ...++..+..... ..+.+|+|||+|.+. ...++.|+..++....
T Consensus 247 ~i~~~~~g~~~~~l~~lf~~a~~--------------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 247 EIMSKYYGESEERLREIFKEAEE--------------NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred HHhcccccHHHHHHHHHHHHHHh--------------cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 3221 1223333322211 123599999998873 2356678888876543
Q ss_pred -cceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHhhccCcHH
Q 022641 185 -VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLR 251 (294)
Q Consensus 185 -~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~l~~~~~G~~r 251 (294)
...+|.++|.+..+++++.+ ||. .+.+++|+.+++.++++.... +..+. +..++.+++.+.|-..
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCH
Confidence 34566688988889888876 776 799999999999999986554 34443 4457888888877443
No 172
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.64 E-value=2.1e-14 Score=124.36 Aligned_cols=217 Identities=18% Similarity=0.180 Sum_probs=152.1
Q ss_pred hcCCCcchhhcccHHHHHHHHHHHHcCCC--CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHH
Q 022641 54 KYRPKQVKDVAHQEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~~~~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
......|++++|....+..+......... ..++|.|.+||||..+|+++.+. +...+.+|+.+||.... ...+.
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~---S~R~~~PFIaiNCaAiP-e~LlE 313 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNL---SPRANGPFIAINCAAIP-ETLLE 313 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhc---CcccCCCeEEEecccCC-HHHHH
Confidence 55567899999997777776666655433 35999999999999999999654 56668899999998863 33333
Q ss_pred HHHHHHHhhhcccC---ccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh-----------cCcceEEEEecCCc-
Q 022641 132 TKIKTFAAVAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYIS- 196 (294)
Q Consensus 132 ~~~~~~~~~~~~~~---~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~-----------~~~~~ii~~~~~~~- 196 (294)
..+-.+......+. .+++....+..+-||+|||+.|+...|..|++++++. +.++++|.+||..-
T Consensus 314 SELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~ 393 (560)
T COG3829 314 SELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLE 393 (560)
T ss_pred HHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHH
Confidence 32222222211111 1455556688899999999999999999999999753 34677899998642
Q ss_pred ------ccchHhhccccE--EEecCCC--HHHHHHHHHHHHH----HhCC---CCCHHHHHHHHhh-ccCcHHHHHHHHH
Q 022641 197 ------RIIEPLASRCAK--FRFKPLS--EEVMSSRVLHICN----EEGL---NLDAEALSTLSSI-SQGDLRRAITYLQ 258 (294)
Q Consensus 197 ------~~~~~l~~r~~~--i~~~~~~--~~~~~~~l~~~~~----~~~~---~~~~~~l~~l~~~-~~G~~r~~~~~l~ 258 (294)
.+...|..|..+ |.++|+- ++++..+..+.+. +.+. .+++++++.|.++ ++||+|++-|+++
T Consensus 394 ~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviE 473 (560)
T COG3829 394 KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIE 473 (560)
T ss_pred HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHH
Confidence 234455667764 5556653 3455555554444 3332 3899999999988 8999999999999
Q ss_pred HHHHHh--CCCCChhhhh
Q 022641 259 GAARLF--GSSITSKDLI 274 (294)
Q Consensus 259 ~~~~~~--~~~it~~~v~ 274 (294)
.+...+ +.-|+.+++-
T Consensus 474 R~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 474 RAVNLVESDGLIDADDLP 491 (560)
T ss_pred HHHhccCCcceeehhhcc
Confidence 999765 3336666654
No 173
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.64 E-value=1.9e-14 Score=133.45 Aligned_cols=215 Identities=16% Similarity=0.119 Sum_probs=145.3
Q ss_pred CcchhhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHH
Q 022641 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (294)
..|++++|....+..+.+.+.. .....++|+|++||||+++|+++.+... ....+++.++|............+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~---r~~~pfv~vnc~~~~~~~~~~elfg 398 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESE---RAAGPYIAVNCQLYPDEALAEEFLG 398 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCC---ccCCCeEEEECCCCChHHHHHHhcC
Confidence 4678899987777666555543 2223599999999999999999987642 2356888999887643111111111
Q ss_pred HHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------c
Q 022641 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------R 197 (294)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~-------~ 197 (294)
.. . ........+....+..+.|+|||++.++...+..|++++++.. ..+++|++|+... .
T Consensus 399 ~~-~-~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~ 476 (638)
T PRK11388 399 SD-R-TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNR 476 (638)
T ss_pred CC-C-cCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCC
Confidence 11 0 0011112222334567899999999999999999999997532 1456777776531 2
Q ss_pred cchHhhcccc--EEEecCCCH--HHHHHHHHHHHHHh------CCCCCHHHHHHHHhhc-cCcHHHHHHHHHHHHHHh-C
Q 022641 198 IIEPLASRCA--KFRFKPLSE--EVMSSRVLHICNEE------GLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-G 265 (294)
Q Consensus 198 ~~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~~~------~~~~~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~-~ 265 (294)
+...+..|+. .|.++|+.. +++..++.+++... .+.+++++++.|.++. +||+|++.++++.+.... +
T Consensus 477 f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~ 556 (638)
T PRK11388 477 FSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDN 556 (638)
T ss_pred ChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC
Confidence 3455666665 577777764 46666666655432 2468999999999984 999999999999987655 4
Q ss_pred CCCChhhhhhhc
Q 022641 266 SSITSKDLISVS 277 (294)
Q Consensus 266 ~~it~~~v~~~~ 277 (294)
..|+.+++...+
T Consensus 557 ~~i~~~~lp~~~ 568 (638)
T PRK11388 557 GRIRLSDLPEHL 568 (638)
T ss_pred CeecHHHCchhh
Confidence 468888876544
No 174
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.63 E-value=2.4e-14 Score=135.89 Aligned_cols=196 Identities=23% Similarity=0.318 Sum_probs=136.4
Q ss_pred hhhcccHHHHHHHHHHHHcCC-------C--CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHH
Q 022641 61 KDVAHQEEVVRVLTNTLETAN-------C--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-------~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
..++|++.++..+...+.... . ..++|+||+|||||++|++++..+++. ...++.++++.........
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~---~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD---EDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhhcccchHH
Confidence 468899999999988886521 1 248999999999999999999998654 2456666665433222221
Q ss_pred HHHHHHHhhhccc-CccCC-----CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecC
Q 022641 132 TKIKTFAAVAVGS-GQRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (294)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~~-----~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~ 194 (294)
..+ ..+.+. +...+ ......+.+|+|||++.+++..++.|++++++.. .++.+|+|||.
T Consensus 642 ~l~----g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 642 RLI----GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred Hhc----CCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 111 000000 00000 0011234699999999999999999999998653 34568888876
Q ss_pred Ccc-------------------------cchHhhcccc-EEEecCCCHHHHHHHHHHHHHH-------hC--CCCCHHHH
Q 022641 195 ISR-------------------------IIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE-------EG--LNLDAEAL 239 (294)
Q Consensus 195 ~~~-------------------------~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~l 239 (294)
... ..++|..|+. ++.|.|++.+++.+++...+.. .+ +.++++++
T Consensus 718 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~ 797 (852)
T TIGR03346 718 GSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAAL 797 (852)
T ss_pred chHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHH
Confidence 321 3467788886 8999999999999988876642 22 56899999
Q ss_pred HHHHhh-c--cCcHHHHHHHHHHHHHH
Q 022641 240 STLSSI-S--QGDLRRAITYLQGAARL 263 (294)
Q Consensus 240 ~~l~~~-~--~G~~r~~~~~l~~~~~~ 263 (294)
+.|++. + .++.|.+.+.++.....
T Consensus 798 ~~L~~~~~~~~~gaR~L~~~i~~~i~~ 824 (852)
T TIGR03346 798 DFLAEAGYDPVYGARPLKRAIQREIEN 824 (852)
T ss_pred HHHHHhCCCCCCCchhHHHHHHHHHHH
Confidence 999997 3 58899988888876643
No 175
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.62 E-value=4.5e-14 Score=127.13 Aligned_cols=215 Identities=19% Similarity=0.217 Sum_probs=142.7
Q ss_pred CCCcchhhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (294)
....|++++|....+..+...+.. .....++|+|++||||+++|+++.... .....+++.++|..... ..+...
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s---~r~~~pfv~inca~~~~-~~~e~e 274 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS---PRGKKPFLALNCASIPD-DVVESE 274 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC---CCCCCCeEEeccccCCH-HHHHHH
Confidence 456788999987776666555532 233459999999999999999986543 23356888898877542 222211
Q ss_pred HHHHHhhhccc--CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc----
Q 022641 134 IKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS---- 196 (294)
Q Consensus 134 ~~~~~~~~~~~--~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~---- 196 (294)
+-......... ....+....+..+.|+|||++.++...+..|+..+++.. ..+++|++|+...
T Consensus 275 lFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~ 354 (520)
T PRK10820 275 LFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 354 (520)
T ss_pred hcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHH
Confidence 11100000000 011122223567899999999999999999999997632 2346777775432
Q ss_pred ---ccchHhhcccc--EEEecCCCH--HHHHHHHHH----HHHHhCC---CCCHHHHHHHHhh-ccCcHHHHHHHHHHHH
Q 022641 197 ---RIIEPLASRCA--KFRFKPLSE--EVMSSRVLH----ICNEEGL---NLDAEALSTLSSI-SQGDLRRAITYLQGAA 261 (294)
Q Consensus 197 ---~~~~~l~~r~~--~i~~~~~~~--~~~~~~l~~----~~~~~~~---~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~ 261 (294)
...+.+..|+. .|.++|+.. +++..++.. .+.+.+. .+++++++.|..+ ++||+|++.+++..+.
T Consensus 355 ~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~ 434 (520)
T PRK10820 355 QKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL 434 (520)
T ss_pred HcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 23456777765 677888764 345544444 4444443 5899999999998 8999999999999888
Q ss_pred HHh-CCCCChhhhh
Q 022641 262 RLF-GSSITSKDLI 274 (294)
Q Consensus 262 ~~~-~~~it~~~v~ 274 (294)
... +..|+.+++.
T Consensus 435 ~~~~~~~i~~~~~~ 448 (520)
T PRK10820 435 TQLEGYELRPQDIL 448 (520)
T ss_pred HhCCCCcccHHHcC
Confidence 765 4568888753
No 176
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.62 E-value=2.3e-14 Score=135.60 Aligned_cols=179 Identities=25% Similarity=0.366 Sum_probs=123.1
Q ss_pred hhhcccHHHHHHHHHHHHcC-------CCC--cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHH
Q 022641 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
+.++||+.++..+...+... ..| .++|+||+|||||++|+++++.+++.. ..++.++.+.......+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~---~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE---DAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc---cceEEEEchhccccccHH
Confidence 57889999999998887532 112 389999999999999999999997652 345566554432222121
Q ss_pred HHHHHHHhhhccc-CccCC-----CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecC
Q 022641 132 TKIKTFAAVAVGS-GQRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (294)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~~-----~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~ 194 (294)
..+ ..+.+. +...+ ......+.||+|||++.+++..++.|++++++.. .++.+|+|||.
T Consensus 586 ~l~----g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 586 KLI----GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred Hhc----CCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 111 000000 00000 0112345799999999999999999999998642 46678888764
Q ss_pred Ccc-------------------------------------cchHhhcccc-EEEecCCCHHHHHHHHHHHHHH-------
Q 022641 195 ISR-------------------------------------IIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE------- 229 (294)
Q Consensus 195 ~~~-------------------------------------~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~------- 229 (294)
... +.|+|++|+. ++.|.|++.+++..++...+..
T Consensus 662 g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~ 741 (821)
T CHL00095 662 GSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNE 741 (821)
T ss_pred chHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 210 2357889994 8999999999999998887753
Q ss_pred hC--CCCCHHHHHHHHhhc
Q 022641 230 EG--LNLDAEALSTLSSIS 246 (294)
Q Consensus 230 ~~--~~~~~~~l~~l~~~~ 246 (294)
.+ +.+++++.+.|++.+
T Consensus 742 ~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 742 QGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred CCcEEEECHHHHHHHHHhc
Confidence 23 458999999999863
No 177
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.62 E-value=5.9e-14 Score=126.33 Aligned_cols=212 Identities=20% Similarity=0.198 Sum_probs=143.7
Q ss_pred cchhhcccHHHHHHHHHHHHcC--CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHH
Q 022641 59 QVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
.+..++|+...++.+.+.+..- ...+++|+|++||||+++|+++..... ....+++.++|..... ..+...+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~---r~~~p~v~v~c~~~~~-~~~e~~lfG 260 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP---RADKPLVYLNCAALPE-SLAESELFG 260 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC---cCCCCeEEEEcccCCh-HHHHHHhcC
Confidence 5678899988887777766543 234599999999999999999988642 2356888899887542 222211110
Q ss_pred HHhhhc-cc-CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------
Q 022641 137 FAAVAV-GS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------- 196 (294)
Q Consensus 137 ~~~~~~-~~-~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~------- 196 (294)
...... +. ....+....+..+.|||||++.|+...+..|+..+++.. ..+++|++|+...
T Consensus 261 ~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 340 (509)
T PRK05022 261 HVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAG 340 (509)
T ss_pred ccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcC
Confidence 000000 00 011222334567899999999999999999999997533 2557888886542
Q ss_pred ccchHhhcccc--EEEecCCCH--HHHHHHHHHHHH----HhC---CCCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHh
Q 022641 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEG---LNLDAEALSTLSSI-SQGDLRRAITYLQGAARLF 264 (294)
Q Consensus 197 ~~~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~---~~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~ 264 (294)
.+...|..|+. .|.++|+.. +++..++.+++. +.+ +.+++++++.|..+ +.||+|++.++++.++...
T Consensus 341 ~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 341 RFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred CccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 24566777765 577777764 455555554443 322 46899999999998 7999999999999988776
Q ss_pred CC-------CCChhhhh
Q 022641 265 GS-------SITSKDLI 274 (294)
Q Consensus 265 ~~-------~it~~~v~ 274 (294)
.. .|+.+++.
T Consensus 421 ~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 421 RARGAGRIVTLEAQHLD 437 (509)
T ss_pred CCCccCccceecHHHcC
Confidence 32 36666654
No 178
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.8e-15 Score=118.99 Aligned_cols=205 Identities=20% Similarity=0.259 Sum_probs=140.3
Q ss_pred CCcchhhcccHHHHHHHHHHHHcC-------------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
..++.++-|.+..++.+.+.+.-. .+..+++||+||||||.||+++|++. ...|+.+-++.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT------SATFlRvvGse 254 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT------SATFLRVVGSE 254 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc------chhhhhhhhHH
Confidence 346778889999999998887532 23359999999999999999999987 55565554443
Q ss_pred ------CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh---h-
Q 022641 124 ------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET---Y- 182 (294)
Q Consensus 124 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~---~- 182 (294)
..+...++..+........ .++||||||.+. ...+..++.+++. +
T Consensus 255 LiQkylGdGpklvRqlF~vA~e~ap--------------SIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFd 320 (440)
T KOG0726|consen 255 LIQKYLGDGPKLVRELFRVAEEHAP--------------SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 320 (440)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCC--------------ceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcc
Confidence 2233445555554433332 499999999873 1244455555543 2
Q ss_pred -cCcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHH----hhccCcHHHH
Q 022641 183 -SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLS----SISQGDLRRA 253 (294)
Q Consensus 183 -~~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~l~----~~~~G~~r~~ 253 (294)
...+.+|++||....+++++.+ |.. .|.|+.|+....+.++.-.-. ++.+++++ ++.++ +.++.|+..+
T Consensus 321 srgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs--~Mtl~~dVnle~li~~kddlSGAdIkAi 398 (440)
T KOG0726|consen 321 SRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS--RMTLAEDVNLEELIMTKDDLSGADIKAI 398 (440)
T ss_pred ccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeec--ccchhccccHHHHhhcccccccccHHHH
Confidence 3567899999999999999987 555 799999998888877743332 23344333 44433 3477888887
Q ss_pred HHHHHHHHHHh-CCCCChhhhhhhcccccCC
Q 022641 254 ITYLQGAARLF-GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 254 ~~~l~~~~~~~-~~~it~~~v~~~~~~~~~~ 283 (294)
+.-.-..+... +..++.+++.++...+-.+
T Consensus 399 ctEaGllAlRerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 399 CTEAGLLALRERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred HHHHhHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 76666555544 4579999998877665444
No 179
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.61 E-value=5.3e-15 Score=137.23 Aligned_cols=208 Identities=27% Similarity=0.419 Sum_probs=163.0
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCC--------------CC--cEEEECCCCCCHHHHHHHHHHHhcCCCc
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN--------------CP--HMLFYGPPGTGKTTTALAIAHQLFGPEL 111 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~--------------~~--~ill~Gp~G~GKT~la~~la~~~~~~~~ 111 (294)
..-|.++|+|....++.|.......+..|+.... .. .++++||||+|||+.+...+.++
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 3579999999999999999888878888886530 00 15999999999999999999999
Q ss_pred cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCcc----CCCCCCCCcEEEEEeCCCCCCH---HHHHHHHHHHHhhcC
Q 022641 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR----RGGYPCPPYKIIILDEADSMTE---DAQNALRRTMETYSK 184 (294)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lliiDei~~l~~---~~~~~L~~~l~~~~~ 184 (294)
+..+++.|+++.++...+...+..+.....-.... ..........||++||+|.+.. ..+..|-.++.. .
T Consensus 382 -g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~k--s 458 (871)
T KOG1968|consen 382 -GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKK--S 458 (871)
T ss_pred -ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHh--c
Confidence 88999999999998887777666644332211111 0011123345999999999876 345555556553 4
Q ss_pred cceEEEEecCCcc-cchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 022641 185 VTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (294)
Q Consensus 185 ~~~ii~~~~~~~~-~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 263 (294)
...+|++||+... ..+.+.+-|..++|..|+.+.+...+..+|..+++.++++.++.+.+.++||+|.+++++++....
T Consensus 459 ~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 459 SRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred cCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence 5568899987654 345667778899999999999999999999999999999999999999999999999999998554
No 180
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.60 E-value=3.6e-14 Score=117.92 Aligned_cols=198 Identities=17% Similarity=0.174 Sum_probs=126.1
Q ss_pred cCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHH
Q 022641 55 YRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (294)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (294)
+.|..-..+.-.......+..++..++ +++|.||||||||++++.+++.+ +.+++.+++........+....
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l------~~~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARL------NWPCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHH------CCCeEEEEecCCCChhhcCCCc
Confidence 344444456666666777777776544 79999999999999999999999 7778877766554432221110
Q ss_pred HH-HHhhhcccCccCCCC--CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh--------------cCcceEEEEecCCc-
Q 022641 135 KT-FAAVAVGSGQRRGGY--PCPPYKIIILDEADSMTEDAQNALRRTMETY--------------SKVTRFFFICNYIS- 196 (294)
Q Consensus 135 ~~-~~~~~~~~~~~~~~~--~~~~~~lliiDei~~l~~~~~~~L~~~l~~~--------------~~~~~ii~~~~~~~- 196 (294)
.. ............+.. ....+.+|++||++..+++.+..|..+++.. ...+++|.|+|...
T Consensus 111 ~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~ 190 (327)
T TIGR01650 111 AIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGL 190 (327)
T ss_pred eeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCc
Confidence 00 000000000000100 1134568999999999999999999888731 13466788888632
Q ss_pred -----------ccchHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHhh---cc-----------C
Q 022641 197 -----------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLN--LDAEALSTLSSI---SQ-----------G 248 (294)
Q Consensus 197 -----------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~l~~l~~~---~~-----------G 248 (294)
.++.++++||. .+.+..|+.++..+++..... ++. .+++.++++++. +. -
T Consensus 191 Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~--~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~ 268 (327)
T TIGR01650 191 GDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAK--GFDDTEGKDIINAMVRVADMTRNAFINGDISTVM 268 (327)
T ss_pred CCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhcc--CCCccchHHHHHHHHHHHHHHHhhhccCCccccc
Confidence 36899999998 568999999999999876542 221 134555555543 21 1
Q ss_pred cHHHHHHHHHHHHH
Q 022641 249 DLRRAITYLQGAAR 262 (294)
Q Consensus 249 ~~r~~~~~l~~~~~ 262 (294)
++|..+...+.+..
T Consensus 269 SpR~li~w~~~~~~ 282 (327)
T TIGR01650 269 SPRTVITWAENAEI 282 (327)
T ss_pred cHHHHHHHHHHHHh
Confidence 67777777665443
No 181
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.60 E-value=7.4e-14 Score=130.24 Aligned_cols=217 Identities=21% Similarity=0.252 Sum_probs=140.2
Q ss_pred hhhhhcCC--CcchhhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 50 PWVEKYRP--KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 50 ~~~~~~~~--~~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
.+.+.+.. ..|.+++|+...+..+.+.+.. ....+++|+|++|||||++|+++..... ..+.+++.++|....
T Consensus 363 ~lt~~L~~~n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~---r~~~~~v~i~c~~~~ 439 (686)
T PRK15429 363 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG---RNNRRMVKMNCAAMP 439 (686)
T ss_pred HHHHhhhhccccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC---CCCCCeEEEecccCC
Confidence 34444444 4577899998777776655543 2334699999999999999999987652 235688888887653
Q ss_pred chhHHHH-HHHHHHhhhccc-CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEe
Q 022641 126 GINVVRT-KIKTFAAVAVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFIC 192 (294)
Q Consensus 126 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~ 192 (294)
. ..+.. .+........+. ....+......++.|+|||++.++...+..|+..+++.. ..+++|+++
T Consensus 440 ~-~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t 518 (686)
T PRK15429 440 A-GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 518 (686)
T ss_pred h-hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeC
Confidence 2 11111 111100000000 001111223456799999999999999999999997643 345788887
Q ss_pred cCCc-------ccchHhhcccc--EEEecCCCH--HHHHHHHHHHHH----HhCC---CCCHHHHHHHHhh-ccCcHHHH
Q 022641 193 NYIS-------RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEGL---NLDAEALSTLSSI-SQGDLRRA 253 (294)
Q Consensus 193 ~~~~-------~~~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~~---~~~~~~l~~l~~~-~~G~~r~~ 253 (294)
+..- .+...+..|+. .|.++|+.. +++..++++++. +.+. .+++++++.|..+ +.||+|++
T Consensus 519 ~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL 598 (686)
T PRK15429 519 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVREL 598 (686)
T ss_pred CCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHH
Confidence 6542 23345666765 577777754 455555555443 3332 4799999999887 79999999
Q ss_pred HHHHHHHHHHh-CCCCCh
Q 022641 254 ITYLQGAARLF-GSSITS 270 (294)
Q Consensus 254 ~~~l~~~~~~~-~~~it~ 270 (294)
.++++.++... +..|+.
T Consensus 599 ~~~i~~a~~~~~~~~i~~ 616 (686)
T PRK15429 599 ENVIERAVLLTRGNVLQL 616 (686)
T ss_pred HHHHHHHHHhCCCCcccc
Confidence 99999988765 334554
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.59 E-value=1.2e-13 Score=130.64 Aligned_cols=195 Identities=25% Similarity=0.340 Sum_probs=128.8
Q ss_pred cchhhcccHHHHHHHHHHHHcC-------CC--CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhH
Q 022641 59 QVKDVAHQEEVVRVLTNTLETA-------NC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~-------~~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (294)
-.+.++|++.++..+...+... .. ..++|+||+|||||++|+++++.+++.. ..++.++++.......
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~---~~~i~id~se~~~~~~ 642 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD---DAMVRIDMSEFMEKHS 642 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC---CcEEEEEhHHhhhhhh
Confidence 3457889999999888887642 11 2489999999999999999999886432 3455565544322111
Q ss_pred HHHHHHHHHhhhccc-CccCC-----CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEe
Q 022641 130 VRTKIKTFAAVAVGS-GQRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFIC 192 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~ 192 (294)
....+ ..+.+. +...+ ......+++|+|||++.+++..++.|++++++.. .+..+|+||
T Consensus 643 ~~~Li----G~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 643 VSRLV----GAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred HHHHh----CCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 11111 000000 00000 0011234699999999999999999999998642 234578888
Q ss_pred cCCc-------------------------ccchHhhcccc-EEEecCCCHHHHHHHHHHHHHH-------hC--CCCCHH
Q 022641 193 NYIS-------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE-------EG--LNLDAE 237 (294)
Q Consensus 193 ~~~~-------------------------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~ 237 (294)
|... .+.++|.+|+. ++.|.|++.+++..++...+.. .+ +.++++
T Consensus 719 N~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~ 798 (857)
T PRK10865 719 NLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDE 798 (857)
T ss_pred CcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHH
Confidence 7631 13468889994 8999999999999998887754 13 357999
Q ss_pred HHHHHHhhcc---CcHHHHHHHHHHH
Q 022641 238 ALSTLSSISQ---GDLRRAITYLQGA 260 (294)
Q Consensus 238 ~l~~l~~~~~---G~~r~~~~~l~~~ 260 (294)
+++.|++.+- -..|.+.+.++..
T Consensus 799 al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 799 ALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHHHHHHcCCCccCChHHHHHHHHHH
Confidence 9999998642 1245555555543
No 183
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.59 E-value=1.3e-13 Score=118.12 Aligned_cols=212 Identities=23% Similarity=0.218 Sum_probs=148.2
Q ss_pred cchhhcccHHHHHHHHHHHHcCCC--CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHH
Q 022641 59 QVKDVAHQEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~--~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
.+.+++|+...+..+.+.+..-.. .+++|.|.+||||..+|++|.+. +.....+++.+||......-.-.+.+..
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~---S~R~~kPfV~~NCAAlPesLlESELFGH 297 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQL---SPRRDKPFVKLNCAALPESLLESELFGH 297 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhh---CcccCCCceeeeccccchHHHHHHHhcc
Confidence 456899999999888888765433 35999999999999999999765 4455779999999886332211122222
Q ss_pred HHhhhcc-cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------c
Q 022641 137 FAAVAVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------R 197 (294)
Q Consensus 137 ~~~~~~~-~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~-------~ 197 (294)
......+ ...+.+....++.+-||+|||+.++...|..|+.++.+.. -.+++|.+||..- .
T Consensus 298 eKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~ 377 (550)
T COG3604 298 EKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGE 377 (550)
T ss_pred cccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcCc
Confidence 2211111 1234555667888999999999999999999999997532 3567899998642 2
Q ss_pred cchHhhccccE--EEecCCCH--HH----HHHHHHHHHHHhCC---CCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHhC
Q 022641 198 IIEPLASRCAK--FRFKPLSE--EV----MSSRVLHICNEEGL---NLDAEALSTLSSI-SQGDLRRAITYLQGAARLFG 265 (294)
Q Consensus 198 ~~~~l~~r~~~--i~~~~~~~--~~----~~~~l~~~~~~~~~---~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~~ 265 (294)
.-..+..|..+ +.++|+-+ ++ ...++++...+.|. .+++++++.+.++ +.||+|.+.|+++.++..++
T Consensus 378 FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla~ 457 (550)
T COG3604 378 FRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLAG 457 (550)
T ss_pred chhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhc
Confidence 33456667764 45555532 22 23344444444454 5899999999998 69999999999999998876
Q ss_pred CCCChhhh
Q 022641 266 SSITSKDL 273 (294)
Q Consensus 266 ~~it~~~v 273 (294)
..++..++
T Consensus 458 ~~~~~~d~ 465 (550)
T COG3604 458 RLTRRGDL 465 (550)
T ss_pred ccCCCcce
Confidence 66666663
No 184
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.2e-14 Score=114.92 Aligned_cols=205 Identities=20% Similarity=0.218 Sum_probs=137.3
Q ss_pred cchhhcccHHHHHHHHHHHHcC-------------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 59 QVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
++.++-|.++.++.+++.+... .+..++++||||||||.+|+++|+.. +..|+.+-++...
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt------dacfirvigselv 248 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------DACFIRVIGSELV 248 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc------CceEEeehhHHHH
Confidence 4568888999999998887542 33459999999999999999999987 7777777666543
Q ss_pred chhH--HHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh-----hcCcce
Q 022641 126 GINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET-----YSKVTR 187 (294)
Q Consensus 126 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~-----~~~~~~ 187 (294)
-.+. -...+..+.... ...+..+||+||+|.+. .+++...+.++.. ...+..
T Consensus 249 qkyvgegarmvrelf~ma----------rtkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMA----------RTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred HHHhhhhHHHHHHHHHHh----------cccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 3222 112222222221 22345699999999873 3355556666543 335778
Q ss_pred EEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHhhc----cCcHHHHHHHHH-
Q 022641 188 FFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSIS----QGDLRRAITYLQ- 258 (294)
Q Consensus 188 ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~l~~~~----~G~~r~~~~~l~- 258 (294)
++++||.+..+++++++ |.. .++|.-|+.+-...+++-.++.. .++.+. ++.|+.+| +.++|+++...-
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm--sverdir~ellarlcpnstgaeirsvcteagm 396 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM--SVERDIRFELLARLCPNSTGAEIRSVCTEAGM 396 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc--ccccchhHHHHHhhCCCCcchHHHHHHHHhhH
Confidence 99999999999999987 555 79999999888888886655443 333333 44455554 456777665443
Q ss_pred HHHHHhCCCCChhhhhhhccccc
Q 022641 259 GAARLFGSSITSKDLISVSGYPT 281 (294)
Q Consensus 259 ~~~~~~~~~it~~~v~~~~~~~~ 281 (294)
++...-.+..|..++.+++..+.
T Consensus 397 fairarrk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 397 FAIRARRKVATEKDFLDAVNKVV 419 (435)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHH
Confidence 23322255678888877776543
No 185
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.58 E-value=1.9e-13 Score=111.59 Aligned_cols=218 Identities=15% Similarity=0.081 Sum_probs=138.6
Q ss_pred hhhcccHHHH---HHHHHHHHc---CCCCcEEEECCCCCCHHHHHHHHHHHhcC---CCccCCcceeecCCCCcchhHHH
Q 022641 61 KDVAHQEEVV---RVLTNTLET---ANCPHMLFYGPPGTGKTTTALAIAHQLFG---PELYKSRVLELNASDDRGINVVR 131 (294)
Q Consensus 61 ~~~~g~~~~~---~~l~~~l~~---~~~~~ill~Gp~G~GKT~la~~la~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 131 (294)
+..+|.+.+. +.|.+.+.. .+.++++|+|++|.|||++++.+.+.... .+....+++.+......+...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 3445655444 455555544 34478999999999999999999987632 12234577788777776766666
Q ss_pred HHHHHHHhhhcccCccCCC--------CCCCCcEEEEEeCCCCC---CHHHHHHHHHHHHhhc--CcceEEEEecC----
Q 022641 132 TKIKTFAAVAVGSGQRRGG--------YPCPPYKIIILDEADSM---TEDAQNALRRTMETYS--KVTRFFFICNY---- 194 (294)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~lliiDei~~l---~~~~~~~L~~~l~~~~--~~~~ii~~~~~---- 194 (294)
..+......+......... ...-+..+|||||+|.+ +...+..++..+.... -...+|+++..
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~ 193 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYR 193 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHH
Confidence 5555544444332221111 11234569999999986 2333444444443322 23445555432
Q ss_pred CcccchHhhccccEEEecCCCHH-HHHHHHHHHHHHh----CCC-CCHHHHHHHHhhccCcHHHHHHHHHHHHHHh----
Q 022641 195 ISRIIEPLASRCAKFRFKPLSEE-VMSSRVLHICNEE----GLN-LDAEALSTLSSISQGDLRRAITYLQGAARLF---- 264 (294)
Q Consensus 195 ~~~~~~~l~~r~~~i~~~~~~~~-~~~~~l~~~~~~~----~~~-~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---- 264 (294)
....++++.+||..+.+++...+ +...++...-..- .-. -+++...+|.+.|+|.+..+..++..++..+
T Consensus 194 al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 194 ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSG 273 (302)
T ss_pred HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcC
Confidence 23457899999999999888654 4444443322211 111 3567778999999999999999999988887
Q ss_pred CCCCChhhhhhhcc
Q 022641 265 GSSITSKDLISVSG 278 (294)
Q Consensus 265 ~~~it~~~v~~~~~ 278 (294)
.+.||.+.+..+--
T Consensus 274 ~E~It~~~l~~~~~ 287 (302)
T PF05621_consen 274 EERITREILDKIDW 287 (302)
T ss_pred CceecHHHHhhCCC
Confidence 56799998877543
No 186
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.58 E-value=2.7e-14 Score=123.22 Aligned_cols=176 Identities=20% Similarity=0.214 Sum_probs=113.0
Q ss_pred cchhhcccHHHHHHHHHHHHc----------CC--------CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 59 QVKDVAHQEEVVRVLTNTLET----------AN--------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~----------~~--------~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
--+.++||+.+++.+...+.+ .. ..+++|+||||||||++|+++++.+ +.++..++
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l------~~pf~~~d 148 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL------NVPFAIAD 148 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc------CCCeEEec
Confidence 334678999999988766621 11 2469999999999999999999887 55555555
Q ss_pred CCCCcc----hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhh
Q 022641 121 ASDDRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY 182 (294)
Q Consensus 121 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------------~~~~~L~~~l~~~ 182 (294)
+..... .......+........ .......+++|+|||+|.+++ ..++.|+++++..
T Consensus 149 a~~L~~~gyvG~d~e~~L~~~~~~~~------~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~ 222 (413)
T TIGR00382 149 ATTLTEAGYVGEDVENILLKLLQAAD------YDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGT 222 (413)
T ss_pred hhhccccccccccHHHHHHHHHHhCc------ccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhcc
Confidence 443211 1111222222111100 001122346999999999876 5789999999632
Q ss_pred c-------------CcceEEEEecCCc--------------------------------------------------ccc
Q 022641 183 S-------------KVTRFFFICNYIS--------------------------------------------------RII 199 (294)
Q Consensus 183 ~-------------~~~~ii~~~~~~~--------------------------------------------------~~~ 199 (294)
. ....+|.|+|-.+ .+.
T Consensus 223 ~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~ 302 (413)
T TIGR00382 223 VANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLI 302 (413)
T ss_pred ceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhH
Confidence 1 1234555554300 134
Q ss_pred hHhhcccc-EEEecCCCHHHHHHHHHHH----HH-------HhCC--CCCHHHHHHHHhhc
Q 022641 200 EPLASRCA-KFRFKPLSEEVMSSRVLHI----CN-------EEGL--NLDAEALSTLSSIS 246 (294)
Q Consensus 200 ~~l~~r~~-~i~~~~~~~~~~~~~l~~~----~~-------~~~~--~~~~~~l~~l~~~~ 246 (294)
|+|+.|+. ++.|.|++.+++..++..- .+ ..++ .+++++++.|++.+
T Consensus 303 PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 303 PEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred HHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 77888987 7889999999999988752 22 1243 47899999999873
No 187
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.57 E-value=2.8e-14 Score=116.05 Aligned_cols=188 Identities=21% Similarity=0.291 Sum_probs=107.1
Q ss_pred hcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHH--------
Q 022641 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-------- 134 (294)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 134 (294)
++|++..++.|.+++..+..+.++|+||+|+|||++++.+.+.+..... ..+.+..............+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY---KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE---CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC---cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 4689999999999999887778999999999999999999998732221 22222222222222221110
Q ss_pred -HHHHhhhccc-Cc--------cCCC----------CCCCCcEEEEEeCCCCCC------HHHHHHHHHHHHh--hcCcc
Q 022641 135 -KTFAAVAVGS-GQ--------RRGG----------YPCPPYKIIILDEADSMT------EDAQNALRRTMET--YSKVT 186 (294)
Q Consensus 135 -~~~~~~~~~~-~~--------~~~~----------~~~~~~~lliiDei~~l~------~~~~~~L~~~l~~--~~~~~ 186 (294)
.......... .. .... ....+..+|+|||++.+. ......|...++. ...+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 0001110000 00 0000 001223799999999987 4555667777765 23445
Q ss_pred eEEEEecCCcc------cchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHhhccCcHHHHH
Q 022641 187 RFFFICNYISR------IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL--DAEALSTLSSISQGDLRRAI 254 (294)
Q Consensus 187 ~ii~~~~~~~~------~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~l~~l~~~~~G~~r~~~ 254 (294)
.+|+++..... -...+..|+..+.++|++.++..+++...+... ..+ +++.++.+...++|+|+.+.
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 55555544221 123466777789999999999999999987665 544 99999999999999999764
No 188
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.57 E-value=5.7e-14 Score=105.74 Aligned_cols=140 Identities=34% Similarity=0.364 Sum_probs=93.3
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHH-Hhhhcc
Q 022641 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF-AAVAVG 143 (294)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 143 (294)
|++..+..+...+......+++|+||||+|||++++.+++.+.. ....++.+++................ ....
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-- 76 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAELFGHFLVRLL-- 76 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHHHhhhhhHhHH--
Confidence 56777888888887766668999999999999999999998842 13455556554433322222111100 0000
Q ss_pred cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc------CcceEEEEecCCc--ccchHhhcccc-EEEecC
Q 022641 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------KVTRFFFICNYIS--RIIEPLASRCA-KFRFKP 213 (294)
Q Consensus 144 ~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~------~~~~ii~~~~~~~--~~~~~l~~r~~-~i~~~~ 213 (294)
.......+..+|+|||++.+.......+...++... ....+|++++... .+.+.+.+|+. .+.++|
T Consensus 77 ----~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 77 ----FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred ----HHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 000112345699999999997777788888887753 5677888888766 67788999984 666653
No 189
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.57 E-value=3.5e-13 Score=108.25 Aligned_cols=126 Identities=21% Similarity=0.279 Sum_probs=104.1
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEec------------CCcccchHhhccccEEEecCCCHHHHHHHH
Q 022641 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (294)
Q Consensus 156 ~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~------------~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l 223 (294)
+++|||||+|+|+-++...|-+.+++--. ..++++|| .++.++-.|++|..+|...|++.++++++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~-PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMA-PIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccC-cEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 57999999999999999999999986333 33555554 346688999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHhhc-cCcHHHHHHHHHHHHHHh----CCCCChhhhhhhcccccC
Q 022641 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVSGYPTG 282 (294)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~ 282 (294)
+..|..+.+.+++++++.|.... .-++|.+++++..+.... +..+..+++..+...+-+
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLD 431 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhh
Confidence 99999999999999999999874 567999999998777655 455778888777655433
No 190
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.6e-14 Score=123.75 Aligned_cols=204 Identities=16% Similarity=0.155 Sum_probs=147.7
Q ss_pred hhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC----
Q 022641 61 KDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD---- 123 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~---- 123 (294)
..+.|....+..++..+.. ..++.++++||||||||.++++++++. +..++.++++.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~------~a~~~~i~~peli~k 257 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY------GAFLFLINGPELISK 257 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh------CceeEecccHHHHHh
Confidence 3455556666555555422 233459999999999999999999998 67777777653
Q ss_pred --CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH----------HHHHHHHHHHHhhc--CcceEE
Q 022641 124 --DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----------DAQNALRRTMETYS--KVTRFF 189 (294)
Q Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~----------~~~~~L~~~l~~~~--~~~~ii 189 (294)
..+...++..+........ +.+|+|||++.+.+ .....|+.+++... .+.+++
T Consensus 258 ~~gEte~~LR~~f~~a~k~~~-------------psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl 324 (693)
T KOG0730|consen 258 FPGETESNLRKAFAEALKFQV-------------PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVL 324 (693)
T ss_pred cccchHHHHHHHHHHHhccCC-------------CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEE
Confidence 2344455555555443321 45999999999853 34567888888766 667778
Q ss_pred EEecCCcccchHhhc-ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHH-HHHHHHHHHhCC
Q 022641 190 FICNYISRIIEPLAS-RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI-TYLQGAARLFGS 266 (294)
Q Consensus 190 ~~~~~~~~~~~~l~~-r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~-~~l~~~~~~~~~ 266 (294)
.++|.+..+++++++ ||. .+.+.-|+.....++++.+++..+.. ++..+..++..+.|-...-+ .++..++..+-.
T Consensus 325 ~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r 403 (693)
T KOG0730|consen 325 AATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATR 403 (693)
T ss_pred EecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhh
Confidence 888999999999996 887 79999999999999999999887766 67889999999988765544 344444443322
Q ss_pred CCChhhhhhhcccccCCCC
Q 022641 267 SITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 267 ~it~~~v~~~~~~~~~~~~ 285 (294)
. +++++..+.....+...
T Consensus 404 ~-~~~~~~~A~~~i~psa~ 421 (693)
T KOG0730|consen 404 R-TLEIFQEALMGIRPSAL 421 (693)
T ss_pred h-hHHHHHHHHhcCCchhh
Confidence 2 77788888777766644
No 191
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.57 E-value=2.1e-13 Score=125.47 Aligned_cols=221 Identities=14% Similarity=0.073 Sum_probs=138.7
Q ss_pred cchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc-----------CCC-----------------
Q 022641 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-----------GPE----------------- 110 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~-----------~~~----------------- 110 (294)
.|..++|++.++..+.-.+..+...+++|.|++|||||++|+++++.+. |..
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 4678999999999888888776666799999999999999999998872 100
Q ss_pred -ccCCcceeecCCCCcchhHHHHHHHHHHhh-hcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----
Q 022641 111 -LYKSRVLELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----- 183 (294)
Q Consensus 111 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~----- 183 (294)
....+++.+.... ....+...+...... ........+....+..++|+|||++.++...++.|++.++...
T Consensus 82 ~~~~~pfv~~p~~~--t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r 159 (633)
T TIGR02442 82 EQRPVPFVNLPLGA--TEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVER 159 (633)
T ss_pred ccCCCCeeeCCCCC--cHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEE
Confidence 0012222222211 110000000000000 0001112333344567899999999999999999999998642
Q ss_pred --------CcceEEEEecCC-cccchHhhcccc-EEEecCCC-HHHHHHHHHHHHH------------------------
Q 022641 184 --------KVTRFFFICNYI-SRIIEPLASRCA-KFRFKPLS-EEVMSSRVLHICN------------------------ 228 (294)
Q Consensus 184 --------~~~~ii~~~~~~-~~~~~~l~~r~~-~i~~~~~~-~~~~~~~l~~~~~------------------------ 228 (294)
..+.+|.++|.. ..+.+++.+||. .+.+.++. .++..+++.+...
T Consensus 160 ~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 239 (633)
T TIGR02442 160 EGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIA 239 (633)
T ss_pred CCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHH
Confidence 235566666654 346789999997 56676664 3444444443211
Q ss_pred -----HhCCCCCHHHHHHHHhhc---c-CcHHHHHHHHHHHHHHh----CCCCChhhhhhhccccc
Q 022641 229 -----EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF----GSSITSKDLISVSGYPT 281 (294)
Q Consensus 229 -----~~~~~~~~~~l~~l~~~~---~-G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~ 281 (294)
...+.++++.++++++.+ + ..+|..+.+++-+...+ ...++.+||..++..+-
T Consensus 240 ~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 240 RARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 013568888888888764 2 14777777777654444 56799999987665544
No 192
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.1e-13 Score=112.23 Aligned_cols=184 Identities=21% Similarity=0.276 Sum_probs=120.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc---CCCccCCcceeecCCCCcc------hhHHHHHHHHHHhhhcccCccCCCCCCCC
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLF---GPELYKSRVLELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPP 155 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (294)
++++||||||||+|.+++|+.+. ...+.....+++++....+ ...+...++.+.+.... .+.
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d---------~~~ 250 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED---------RGN 250 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC---------CCc
Confidence 89999999999999999999983 3345566778888765433 22333444444433222 112
Q ss_pred cEEEEEeCCCCCCH---------------HHHHHHHHHHHhhc--CcceEEEEecCCcccchHhhcccc-EEEecCCCHH
Q 022641 156 YKIIILDEADSMTE---------------DAQNALRRTMETYS--KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEE 217 (294)
Q Consensus 156 ~~lliiDei~~l~~---------------~~~~~L~~~l~~~~--~~~~ii~~~~~~~~~~~~l~~r~~-~i~~~~~~~~ 217 (294)
.-.++|||++.+.. ++.+.|+..++... .++.++.|+|....++.+|.+|.. +..+.||+..
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHH
Confidence 34789999998731 26788888888644 455566667888899999999999 7888999999
Q ss_pred HHHHHHHHHHHH---hCCCC--------------CHHHHHHHHhhc-cCcHHHHHHHHHHHHHHh---CCCCChhhhhhh
Q 022641 218 VMSSRVLHICNE---EGLNL--------------DAEALSTLSSIS-QGDLRRAITYLQGAARLF---GSSITSKDLISV 276 (294)
Q Consensus 218 ~~~~~l~~~~~~---~~~~~--------------~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~---~~~it~~~v~~~ 276 (294)
-+.++++..+.+ .|+-+ .+.....+.+.+ .|--...+..|-+.+... ...++.+.+..+
T Consensus 331 ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~~~~~v~~~~fl~a 410 (423)
T KOG0744|consen 331 AIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEYFRTFTVDLSNFLLA 410 (423)
T ss_pred HHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhccCCCccChHHHHHH
Confidence 999988876643 23221 122233333332 444445555666655443 235777766554
Q ss_pred c
Q 022641 277 S 277 (294)
Q Consensus 277 ~ 277 (294)
+
T Consensus 411 l 411 (423)
T KOG0744|consen 411 L 411 (423)
T ss_pred H
Confidence 4
No 193
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.6e-14 Score=115.88 Aligned_cols=204 Identities=20% Similarity=0.181 Sum_probs=132.3
Q ss_pred cchhhcccHHHHHHHHHHHHc--------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchh-H
Q 022641 59 QVKDVAHQEEVVRVLTNTLET--------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN-V 129 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~ 129 (294)
.+++++-++.+...+.+.... ...+|++||||||||||..|+-|++.- +..+-.+.+.+..... .
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S------GlDYA~mTGGDVAPlG~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS------GLDYAIMTGGDVAPLGAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc------CCceehhcCCCccccchH
Confidence 477888888877777666532 234579999999999999999999986 6666666666654321 2
Q ss_pred HHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCC---------CHHH---HHHHHHHHHhhcCcceEEEEecCCcc
Q 022641 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDA---QNALRRTMETYSKVTRFFFICNYISR 197 (294)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l---------~~~~---~~~L~~~l~~~~~~~~ii~~~~~~~~ 197 (294)
....+..+.+... ...+.-+|||||+|.+ +... +|.|+----+.+..+.++++||.+..
T Consensus 427 aVTkiH~lFDWak---------kS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 427 AVTKIHKLFDWAK---------KSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD 497 (630)
T ss_pred HHHHHHHHHHHHh---------hcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc
Confidence 2223333333221 1223459999999864 3333 33333222344567788999999999
Q ss_pred cchHhhcccc-EEEecCCCHHHHHHHHHHHHHHh-------C---------------CC----CCHHHHHHHHhhccC-c
Q 022641 198 IIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE-------G---------------LN----LDAEALSTLSSISQG-D 249 (294)
Q Consensus 198 ~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~-------~---------------~~----~~~~~l~~l~~~~~G-~ 249 (294)
++-++.+|+. +++|+-|..++...+|..++.+. + +. ..+..+...++.+.| +
T Consensus 498 lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 498 LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 9999999998 89999999999999998888542 1 11 245667777777765 4
Q ss_pred HHHHHHHHH--HHHHHhCC--CCChhhhhhhc
Q 022641 250 LRRAITYLQ--GAARLFGS--SITSKDLISVS 277 (294)
Q Consensus 250 ~r~~~~~l~--~~~~~~~~--~it~~~v~~~~ 277 (294)
-|.+-.+.. .++.|.+. -++...+++.+
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v 609 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERV 609 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 455544443 34444422 24444444443
No 194
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.8e-14 Score=127.44 Aligned_cols=206 Identities=19% Similarity=0.211 Sum_probs=151.1
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC----ccCCcceeecCC
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNAS 122 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~~ 122 (294)
.....++.-+...++-++|++..++.+.+.|......|-+|+|+||+|||+++..+|......+ ..+..++.++.+
T Consensus 156 y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235 (786)
T ss_pred HhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH
Confidence 3445556666677889999999999999999999999999999999999999999999984322 234556666544
Q ss_pred CCcc----hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhhcCcceEE
Q 022641 123 DDRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFF 189 (294)
Q Consensus 123 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~---------~~~~~~L~~~l~~~~~~~~ii 189 (294)
.... .....+.++.+...... .++-+|||||+|.+- .+..|.|...+.. ....+|
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~----------~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~I 303 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEK----------SKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCI 303 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhc----------CCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEE
Confidence 3221 12222333333322211 113599999999872 3367788888876 445567
Q ss_pred EEecC-----CcccchHhhccccEEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHhhccC------cHHHHH
Q 022641 190 FICNY-----ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAI 254 (294)
Q Consensus 190 ~~~~~-----~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~l~~~~~G------~~r~~~ 254 (294)
.+|+. ...-+++|.+||+.|.+..|+.++...+|+.+.. .+++.++++++...+.++.. -|-.++
T Consensus 304 GATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 76643 3346889999999999999999999999987665 46888999999998887643 467899
Q ss_pred HHHHHHHHHh
Q 022641 255 TYLQGAARLF 264 (294)
Q Consensus 255 ~~l~~~~~~~ 264 (294)
.++..++...
T Consensus 384 DLiDeA~a~~ 393 (786)
T COG0542 384 DLLDEAGARV 393 (786)
T ss_pred HHHHHHHHHH
Confidence 9999888665
No 195
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.55 E-value=2.5e-13 Score=115.97 Aligned_cols=155 Identities=25% Similarity=0.198 Sum_probs=104.2
Q ss_pred hhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhh
Q 022641 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (294)
..++|.+..+..+..++..++ +++|.||||||||++|+.+++.+ +.+++.+.+........+..........
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l------~~~~~~i~~t~~l~p~d~~G~~~~~~~~ 95 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL------GLPFVRIQCTPDLLPSDLLGTYAYAALL 95 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh------CCCeEEEecCCCCCHHHhcCchhHhhhh
Confidence 347788888888877777776 79999999999999999999999 7888888877654443332211111110
Q ss_pred --hcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc------------CcceEEEEec-----CCcccchH
Q 022641 141 --AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------KVTRFFFICN-----YISRIIEP 201 (294)
Q Consensus 141 --~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~------------~~~~ii~~~~-----~~~~~~~~ 201 (294)
........+....+-..++++|||++.++..++.|+..|++.. ..+.++.|+| ....++++
T Consensus 96 ~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA 175 (329)
T COG0714 96 LEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEA 175 (329)
T ss_pred ccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHH
Confidence 0000001111111111599999999999999999999998621 3344555557 34568999
Q ss_pred hhccc-cEEEecCC-CHHHHHHHH
Q 022641 202 LASRC-AKFRFKPL-SEEVMSSRV 223 (294)
Q Consensus 202 l~~r~-~~i~~~~~-~~~~~~~~l 223 (294)
+++|| ..+.++.| +.++...++
T Consensus 176 ~ldRf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 176 LLDRFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred HHhhEEEEEecCCCCchHHHHHHH
Confidence 99999 58888888 444444443
No 196
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.54 E-value=9e-13 Score=118.47 Aligned_cols=219 Identities=16% Similarity=0.149 Sum_probs=138.1
Q ss_pred hhhhcCCCcchhhcccHHHHHHHHHHHHcCCC------------CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCccee
Q 022641 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (294)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~------------~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (294)
+.+.+...-...+.|++..+..+.-.+..+.. .|++|+|+||+|||++|+.+++..... .++.
T Consensus 193 ~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~ 267 (509)
T smart00350 193 IYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTT 267 (509)
T ss_pred HHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcC
Confidence 33444444455788999888888777766532 169999999999999999999876211 1111
Q ss_pred ecCCCCcch--hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-------------
Q 022641 119 LNASDDRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------- 183 (294)
Q Consensus 119 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~------------- 183 (294)
....+..+. ...++. .........+....+..++|+|||++.+++..+..|+..|+...
T Consensus 268 ~~~~~~~~l~~~~~~~~------~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 268 GKGSSAVGLTAAVTRDP------ETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred CCCCCcCCccccceEcc------CcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence 000111010 000000 00001112333445667899999999999999999999997532
Q ss_pred CcceEEEEecCCc-------------ccchHhhcccc--EEEecCCCHHHHHHHHHHHHHH-------------------
Q 022641 184 KVTRFFFICNYIS-------------RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNE------------------- 229 (294)
Q Consensus 184 ~~~~ii~~~~~~~-------------~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~------------------- 229 (294)
..+.+|.++|... .+++++++||. .+...+++.+.-..++++++..
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQE 421 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHH
Confidence 4566888887542 48899999996 3455667766666666554321
Q ss_pred ------------hCCCCCHHHHHHHHhhc-----c-----------CcHHHHHHHHHHHHHHh----CCCCChhhhhhhc
Q 022641 230 ------------EGLNLDAEALSTLSSIS-----Q-----------GDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (294)
Q Consensus 230 ------------~~~~~~~~~l~~l~~~~-----~-----------G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~ 277 (294)
-...+++++.++|.+.+ . -.+|.+..++..+...+ +..++.+|+..++
T Consensus 422 ~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai 501 (509)
T smart00350 422 FLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAI 501 (509)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 11246788877776541 1 14677777776655555 6679999999887
Q ss_pred ccc
Q 022641 278 GYP 280 (294)
Q Consensus 278 ~~~ 280 (294)
.-+
T Consensus 502 ~l~ 504 (509)
T smart00350 502 RLL 504 (509)
T ss_pred HHH
Confidence 654
No 197
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.53 E-value=4e-15 Score=115.04 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=64.5
Q ss_pred cCCchhhhhcCCCcchhhcc-cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 46 QSSQPWVEKYRPKQVKDVAH-QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g-~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
.+.+|....+...++..-.+ .+..+..+...-+.....+++|+||+|||||++|.++++++... +..+..++..
T Consensus 10 ~a~lp~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~---g~~v~f~~~~-- 84 (178)
T PF01695_consen 10 QAGLPPDATLENFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRK---GYSVLFITAS-- 84 (178)
T ss_dssp ------------------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEHH--
T ss_pred ccccccccccccccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccC---CcceeEeecC--
Confidence 56666444454444443322 33444555444444455689999999999999999999998532 2223333211
Q ss_pred cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
+.+..+.................+.++|||||++... ....+.|+++++.++.+..+|+|||...
T Consensus 85 -------~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~~ 151 (178)
T PF01695_consen 85 -------DLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLSP 151 (178)
T ss_dssp -------HHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-H
T ss_pred -------ceeccccccccccchhhhcCccccccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCch
Confidence 1111111110000000000001234599999998764 4466779999998887778999998653
No 198
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.53 E-value=7.8e-13 Score=117.96 Aligned_cols=212 Identities=20% Similarity=0.195 Sum_probs=139.3
Q ss_pred cchhhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHH
Q 022641 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
.+..++|....+..+...+.. ....+++|+|++||||+++|+.+..... ....+++.++|..... ..+...+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~---~~~~~~v~v~c~~~~~-~~~~~~lfg 212 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSD---RKDKRFVAINCAAIPE-NLLESELFG 212 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCC---cCCCCeEEEECCCCCh-HHHHHHhcC
Confidence 344677776666666665543 2334699999999999999999987642 2345788888877532 222221111
Q ss_pred HHhhhccc--CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------
Q 022641 137 FAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------- 196 (294)
Q Consensus 137 ~~~~~~~~--~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~------- 196 (294)
........ ....+....+.++.|+|||++.|+...+..|+++++... ..+++|++++...
T Consensus 213 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 292 (445)
T TIGR02915 213 YEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEG 292 (445)
T ss_pred CCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcC
Confidence 00000000 111222334567899999999999999999999998643 2457888886542
Q ss_pred ccchHhhcccc--EEEecCCCH--HHHHHHHHHHHH----HhC---CCCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHh
Q 022641 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEG---LNLDAEALSTLSSI-SQGDLRRAITYLQGAARLF 264 (294)
Q Consensus 197 ~~~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~---~~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~ 264 (294)
.+.+.|..|+. .|.++|+.. +++..++.+++. ..+ ..+++++++.|..+ ++||+|++.++++.++...
T Consensus 293 ~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 293 TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred CccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 24455667765 677777753 344444444443 323 35899999999988 5999999999999988766
Q ss_pred -CCCCChhhhh
Q 022641 265 -GSSITSKDLI 274 (294)
Q Consensus 265 -~~~it~~~v~ 274 (294)
+..|+.+++.
T Consensus 373 ~~~~i~~~~l~ 383 (445)
T TIGR02915 373 EGNQITAEDLG 383 (445)
T ss_pred CCCcccHHHcC
Confidence 4568877764
No 199
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.53 E-value=8.9e-15 Score=109.27 Aligned_cols=116 Identities=23% Similarity=0.219 Sum_probs=77.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDe 163 (294)
+++|+||||||||++++.+++.+ +..+..+++........+....... ................+..+++|||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAMRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTHHEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHh------hcceEEEEeccccccccceeeeeec-ccccccccccccccccceeEEEECC
Confidence 48999999999999999999999 7788888877766655443211111 0000000011111123678999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc-------------C------cceEEEEecCCc----ccchHhhccc
Q 022641 164 ADSMTEDAQNALRRTMETYS-------------K------VTRFFFICNYIS----RIIEPLASRC 206 (294)
Q Consensus 164 i~~l~~~~~~~L~~~l~~~~-------------~------~~~ii~~~~~~~----~~~~~l~~r~ 206 (294)
++..++..++.|..+++... . ...+|+++|... .+.+++++||
T Consensus 74 in~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 74 INRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp CGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 99999999999999997422 1 277888888877 7889999987
No 200
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.52 E-value=9.2e-13 Score=118.25 Aligned_cols=213 Identities=20% Similarity=0.253 Sum_probs=141.7
Q ss_pred cchhhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHH
Q 022641 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (294)
.+.+++|.......+.+.+.. .....++|+|++|||||++|+++.... .....+++.+++..... ..+...+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s---~~~~~~~i~i~c~~~~~-~~~~~~lfg 211 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS---PRAKAPFIALNMAAIPK-DLIESELFG 211 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC---CCCCCCeEeeeCCCCCH-HHHHHHhcC
Confidence 345678876666666555533 223359999999999999999998764 23356888888877522 222211111
Q ss_pred HH-hhhcc-cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCC-------c
Q 022641 137 FA-AVAVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (294)
Q Consensus 137 ~~-~~~~~-~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~-------~ 196 (294)
.. ....+ .....+....+.++.|+|||++.++...+..|++.+++.. ..+++|++++.. .
T Consensus 212 ~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 291 (469)
T PRK10923 212 HEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 (469)
T ss_pred CCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcC
Confidence 00 00000 0011222334556799999999999999999999998643 234788887643 2
Q ss_pred ccchHhhcccc--EEEecCCCH--HHHHHHHHHHHH----HhCC---CCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHh
Q 022641 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEGL---NLDAEALSTLSSI-SQGDLRRAITYLQGAARLF 264 (294)
Q Consensus 197 ~~~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~~---~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~ 264 (294)
.+.+.+..|+. .|.++|+.. +++..++.+++. ..+. .+++++++.|..+ +.||+|++.++++.++...
T Consensus 292 ~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 34567788875 677777754 555555555543 3232 4899999999988 7999999999999988766
Q ss_pred -CCCCChhhhhh
Q 022641 265 -GSSITSKDLIS 275 (294)
Q Consensus 265 -~~~it~~~v~~ 275 (294)
+..|+.+++..
T Consensus 372 ~~~~i~~~~l~~ 383 (469)
T PRK10923 372 AGQEVLIQDLPG 383 (469)
T ss_pred CCCcccHHHCcH
Confidence 55688888753
No 201
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.4e-13 Score=118.31 Aligned_cols=192 Identities=13% Similarity=0.118 Sum_probs=130.1
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEE
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llii 161 (294)
.++++|.||+|+|||.|++++++++.........++.+...+......+...+..........+ +.+|++
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~----------PSiIvL 500 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYA----------PSIIVL 500 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhC----------CcEEEE
Confidence 3569999999999999999999998633333333333344444455555555555554444333 349999
Q ss_pred eCCCCCCH--------------HHHHHHHHHHHh---hcCcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHH
Q 022641 162 DEADSMTE--------------DAQNALRRTMET---YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSS 221 (294)
Q Consensus 162 Dei~~l~~--------------~~~~~L~~~l~~---~~~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~ 221 (294)
|++|.+.. .....|.+++.. ......+|.+++....+.+.+.+ +|+ ++.+++|..+++.+
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHH
Confidence 99998732 012233344433 23344567777777777777665 555 78999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHhhccCc-HHHHHHHHHHHHHHh--------CCCCChhhhhhhcccccCC
Q 022641 222 RVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQGAARLF--------GSSITSKDLISVSGYPTGG 283 (294)
Q Consensus 222 ~l~~~~~~~~~~~~~~~l~~l~~~~~G~-~r~~~~~l~~~~~~~--------~~~it~~~v~~~~~~~~~~ 283 (294)
+|.+.+++.......+.++.++..|+|- .+.+....+.+...+ .+-+|.+++.+.+..+.+-
T Consensus 581 IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 581 ILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPL 651 (952)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChH
Confidence 9999999887777888899999999884 444444444444333 2358999999888876654
No 202
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.52 E-value=2.4e-14 Score=110.96 Aligned_cols=117 Identities=27% Similarity=0.358 Sum_probs=71.9
Q ss_pred cchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC---------------
Q 022641 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD--------------- 123 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~--------------- 123 (294)
+|.+++||+.+++.+.-+...+ .|++|+||||||||++|+.+..-+- ........++..-.
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lLP--~l~~~e~le~~~i~s~~~~~~~~~~~~~~ 76 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLLP--PLTEEEALEVSKIYSVAGLGPDEGLIRQR 76 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS----CCEECCESS--S-TT---S---EEEE--
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhCC--CCchHHHhhhccccccccCCCCCceecCC
Confidence 4789999999999998777754 4899999999999999999997662 11111111111000
Q ss_pred -CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 022641 124 -DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (294)
Q Consensus 124 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~ 182 (294)
.+....- .....+. ..+...+++....+.++|||+||+..++....+.|++.+++.
T Consensus 77 Pfr~phhs-~s~~~li--Ggg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 77 PFRAPHHS-ASEAALI--GGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp -EEEE-TT---HHHHH--EEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred CcccCCCC-cCHHHHh--CCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 0000000 0001111 112233566777788999999999999999999999999863
No 203
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.51 E-value=1.8e-12 Score=101.11 Aligned_cols=192 Identities=20% Similarity=0.261 Sum_probs=135.3
Q ss_pred hhcCCCcchhhcccHHHHHHHHHH----HHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchh
Q 022641 53 EKYRPKQVKDVAHQEEVVRVLTNT----LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (294)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~l~~~----l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (294)
..+.+..+.+++|-+..++.|.+- +......|++|+|..|||||++++++..++... +...++++..+.....
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~---glrLVEV~k~dl~~Lp 128 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE---GLRLVEVDKEDLATLP 128 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc---CCeEEEEcHHHHhhHH
Confidence 566777889999988888776543 333344569999999999999999999988433 3346777666655544
Q ss_pred HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-HHHHHHHHHHHH----hhcCcceEEEEecCCcccch---
Q 022641 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTME----TYSKVTRFFFICNYISRIIE--- 200 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-~~~~~~L~~~l~----~~~~~~~ii~~~~~~~~~~~--- 200 (294)
.+.+.+... ..+-||++||+-.=. ...-..|...++ ..+.++.+..|+|..+.++.
T Consensus 129 ~l~~~Lr~~----------------~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~ 192 (287)
T COG2607 129 DLVELLRAR----------------PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMK 192 (287)
T ss_pred HHHHHHhcC----------------CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhh
Confidence 444433332 223499999986543 334455666665 56677878888877654431
Q ss_pred -------------------Hhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-----hhccCcHHHHHH
Q 022641 201 -------------------PLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLS-----SISQGDLRRAIT 255 (294)
Q Consensus 201 -------------------~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~-----~~~~G~~r~~~~ 255 (294)
.+..||. .+.|.|++.++...++..+++..++.++++.++.=+ ...+.+-|.+.+
T Consensus 193 dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~Q 272 (287)
T COG2607 193 DNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQ 272 (287)
T ss_pred hCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHH
Confidence 2345776 789999999999999999999999999876655433 334567788888
Q ss_pred HHHHHHHH
Q 022641 256 YLQGAARL 263 (294)
Q Consensus 256 ~l~~~~~~ 263 (294)
.++.++.-
T Consensus 273 F~~~~~g~ 280 (287)
T COG2607 273 FIRDLAGR 280 (287)
T ss_pred HHHHHHhh
Confidence 88877643
No 204
>PHA02244 ATPase-like protein
Probab=99.51 E-value=7.1e-13 Score=111.44 Aligned_cols=132 Identities=16% Similarity=0.109 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCC
Q 022641 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (294)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
..+..|+..+. +++|+||||||||++|+++++.+ +.+++.++... ....+.. ...........+..
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In~l~--d~~~L~G----~i~~~g~~~dgpLl 175 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMNAIM--DEFELKG----FIDANGKFHETPFY 175 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh------CCCEEEEecCh--HHHhhcc----cccccccccchHHH
Confidence 45566666554 69999999999999999999998 66676665321 0000000 00000000000000
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh-----------cCcceEEEEecCC-----------cccchHhhccccE
Q 022641 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI-----------SRIIEPLASRCAK 208 (294)
Q Consensus 151 ~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~-----------~~~~~ii~~~~~~-----------~~~~~~l~~r~~~ 208 (294)
......++|+|||++.+++..+..|..+++.. +..+++|+++|.. ..+.+++++||..
T Consensus 176 ~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~ 255 (383)
T PHA02244 176 EAFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAP 255 (383)
T ss_pred HHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEE
Confidence 00234569999999999999999999998632 3577899999873 4578999999999
Q ss_pred EEecCCCH
Q 022641 209 FRFKPLSE 216 (294)
Q Consensus 209 i~~~~~~~ 216 (294)
+.+..|+.
T Consensus 256 I~~dyp~~ 263 (383)
T PHA02244 256 IEFDYDEK 263 (383)
T ss_pred eeCCCCcH
Confidence 99988874
No 205
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-13 Score=111.41 Aligned_cols=202 Identities=20% Similarity=0.210 Sum_probs=130.6
Q ss_pred CCcchhhcccHHHHHHHHHHHHcC-------------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
..+|+++-|.-..+..+++.+.-+ .+..++||||||+|||.++++++..+ +..++.+.++.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m------g~nfl~v~ss~ 201 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM------GVNFLKVVSSA 201 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc------CCceEEeeHhh
Confidence 347778888888888887776432 22249999999999999999999999 88888887665
Q ss_pred Ccc------hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhhc---
Q 022641 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS--- 183 (294)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~-----------~~~~~~L~~~l~~~~--- 183 (294)
..+ ...+++.+....... +.+|++||+|... ...+..|..+++...
T Consensus 202 lv~kyiGEsaRlIRemf~yA~~~~--------------pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd 267 (388)
T KOG0651|consen 202 LVDKYIGESARLIRDMFRYAREVI--------------PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD 267 (388)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhC--------------ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch
Confidence 433 233444444333332 2599999999762 224455555555332
Q ss_pred --CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHhhccCcHHHHHHH
Q 022641 184 --KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEG--LNLDAEALSTLSSISQGDLRRAITY 256 (294)
Q Consensus 184 --~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~l~~~~~G~~r~~~~~ 256 (294)
..+.+|+++|++..+.++|++ |.. .+.++-|+..-...+++-....-. -.++.+++-.+.+..+| -...+.
T Consensus 268 ~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g--ad~rn~ 345 (388)
T KOG0651|consen 268 TLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG--ADLRNV 345 (388)
T ss_pred hcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh--HHHhhh
Confidence 467799999999999999987 665 677776666666665533222111 13677777777777665 234455
Q ss_pred HHHHHHHh----CCCCChhhhhhhcccc
Q 022641 257 LQGAARLF----GSSITSKDLISVSGYP 280 (294)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~~~~ 280 (294)
++.+..++ ...+-.|++..++.+.
T Consensus 346 ~tEag~Fa~~~~~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 346 CTEAGMFAIPEERDEVLHEDFMKLVRKQ 373 (388)
T ss_pred cccccccccchhhHHHhHHHHHHHHHHH
Confidence 55554443 2335555555555443
No 206
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.49 E-value=1.7e-12 Score=115.39 Aligned_cols=156 Identities=23% Similarity=0.274 Sum_probs=98.9
Q ss_pred CcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc-c---------h
Q 022641 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-G---------I 127 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~-~---------~ 127 (294)
.+|.++.|+...++.+...+..+ .+++|+||||+|||++++.+...+.. .....+++...-... + .
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp~--~~~~~~le~~~i~s~~g~~~~~~~~~~ 264 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILPP--LTNEEAIETARIWSLVGKLIDRKQIKQ 264 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccCC--CCCcEEEeccccccchhhhcccccccc
Confidence 47899999999988877666544 47999999999999999999876521 111111111110000 0 0
Q ss_pred hHHHH---HHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-------------CcceEEEE
Q 022641 128 NVVRT---KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFI 191 (294)
Q Consensus 128 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~ 191 (294)
...+. ..........+...+++....+.+++|||||++.+++..++.|++.|+... ..+.+|.+
T Consensus 265 ~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa 344 (499)
T TIGR00368 265 RPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAA 344 (499)
T ss_pred CCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEe
Confidence 00000 000000001111134455566778899999999999999999999998642 45678888
Q ss_pred ecCC------c-----------------ccchHhhcccc-EEEecCCCHH
Q 022641 192 CNYI------S-----------------RIIEPLASRCA-KFRFKPLSEE 217 (294)
Q Consensus 192 ~~~~------~-----------------~~~~~l~~r~~-~i~~~~~~~~ 217 (294)
+|.- . .+..+|++||. .+.+++++..
T Consensus 345 ~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 345 MNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred cCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 8742 1 36788999998 6788877544
No 207
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.49 E-value=2.6e-14 Score=116.65 Aligned_cols=167 Identities=15% Similarity=0.219 Sum_probs=93.6
Q ss_pred CCCCcccCCCC--cccCCCCchHHHHhhccccccCCchhhhhcCCCcchhhcc-cHHHHHHHHHHH-HcCCCCcEEEECC
Q 022641 15 KSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVLTNTL-ETANCPHMLFYGP 90 (294)
Q Consensus 15 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~l~~~l-~~~~~~~ill~Gp 90 (294)
+.+.+.+++.. ..+..++..+...++++ .+++|..+.+...+++...+ +..+...+.... .-.+..+++|+||
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~a~~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~ 113 (254)
T COG1484 37 KEWGYAEFLEYLLEEEKLAREARKIERRLR---SASFPAKKTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGP 113 (254)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCccCCcccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECC
Confidence 44554444433 22222333344444444 77888875555555554442 344444444333 2225558999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCc-cCCCCCCCCcEEEEEeCCCCCC-
Q 022641 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ-RRGGYPCPPYKIIILDEADSMT- 168 (294)
Q Consensus 91 ~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lliiDei~~l~- 168 (294)
||||||+||.++++++. .. +..+..+..++ .+..+......... ........+.+||||||++..+
T Consensus 114 ~G~GKThLa~Ai~~~l~-~~--g~sv~f~~~~e---------l~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 114 PGVGKTHLAIAIGNELL-KA--GISVLFITAPD---------LLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPF 181 (254)
T ss_pred CCCcHHHHHHHHHHHHH-Hc--CCeEEEEEHHH---------HHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccC
Confidence 99999999999999995 22 23333332222 11111111100000 0000112345699999999865
Q ss_pred -HHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 169 -EDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 169 -~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
....+.++++|..++.....++|+|.+.
T Consensus 182 ~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 182 SQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred CHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 4457788888888777666689998764
No 208
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.48 E-value=1.3e-12 Score=111.40 Aligned_cols=93 Identities=19% Similarity=0.317 Sum_probs=67.4
Q ss_pred CCcEEEEEeCCCCCCH------------HHHHHHHHHHHhhc----------CcceEEEEe----cCCcccchHhhcccc
Q 022641 154 PPYKIIILDEADSMTE------------DAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA 207 (294)
Q Consensus 154 ~~~~lliiDei~~l~~------------~~~~~L~~~l~~~~----------~~~~ii~~~----~~~~~~~~~l~~r~~ 207 (294)
...++|||||+|++.. .+|..|+++++... .+..+|+.+ ..+..+.|+|..|+.
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 325 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP 325 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 4678999999999842 37888999998522 233333333 235567899999999
Q ss_pred -EEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHhhc
Q 022641 208 -KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS 246 (294)
Q Consensus 208 -~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~l~~l~~~~ 246 (294)
++.+.+++.+++..+|.. .++.+|+ .++++++..|++..
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 378 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELA 378 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHH
Confidence 799999999999988822 2344554 47999999998763
No 209
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.47 E-value=3.9e-12 Score=113.88 Aligned_cols=211 Identities=21% Similarity=0.232 Sum_probs=135.0
Q ss_pred hhhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHH
Q 022641 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (294)
..+++.......+...+.. ....++++.|++||||+++|+++.... .....+++.+++..... ..+...+....
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s---~~~~~~~~~i~c~~~~~-~~~~~~lfg~~ 218 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNS---RRAKGPFIKVNCAALPE-SLLESELFGHE 218 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhC---CCCCCCeEEEECCCCCH-HHHHHHhcCCC
Confidence 3466665555544444332 222369999999999999999997754 22356788888877532 22211111100
Q ss_pred hhhc-c-cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------cc
Q 022641 139 AVAV-G-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RI 198 (294)
Q Consensus 139 ~~~~-~-~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~-------~~ 198 (294)
.... + .....+....+..+.|+|||++.++...+..|+..++... ..+++|++++... .+
T Consensus 219 ~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 219 KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred CCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 0000 0 0111223334567899999999999999999999997632 2357888886542 24
Q ss_pred chHhhcccc--EEEecCCCH--HHHHHHHHHHHH----HhC---CCCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHh-C
Q 022641 199 IEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEG---LNLDAEALSTLSSI-SQGDLRRAITYLQGAARLF-G 265 (294)
Q Consensus 199 ~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~---~~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~-~ 265 (294)
.+.+..|+. .|.++|+.. +++..++..++. ..+ ..+++++++.|..+ ++||+|++.+.++.+.... +
T Consensus 299 ~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~ 378 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSG 378 (457)
T ss_pred hHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCC
Confidence 455666665 567777753 445544444433 222 35899999999988 6999999999999988766 4
Q ss_pred CCCChhhhhh
Q 022641 266 SSITSKDLIS 275 (294)
Q Consensus 266 ~~it~~~v~~ 275 (294)
..|+.+++..
T Consensus 379 ~~i~~~~l~~ 388 (457)
T PRK11361 379 PIIFSEDLPP 388 (457)
T ss_pred CcccHHHChH
Confidence 5688888754
No 210
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.47 E-value=4.3e-12 Score=113.81 Aligned_cols=212 Identities=20% Similarity=0.223 Sum_probs=140.5
Q ss_pred hhcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHh
Q 022641 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (294)
.++|.......+...+.. .....+++.|.+||||+++|+++..... ....+++.+++..... ..+...+.....
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~---~~~~~~~~~~c~~~~~-~~~~~~lfg~~~ 210 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP---RANGPFIALNMAAIPK-DLIESELFGHEK 210 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC---CCCCCeEEEeCCCCCH-HHHHHHhcCCCC
Confidence 466665555555544432 2233599999999999999999987642 2356888888877522 222222211000
Q ss_pred hhc-c-cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------ccc
Q 022641 140 VAV-G-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RII 199 (294)
Q Consensus 140 ~~~-~-~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~-------~~~ 199 (294)
... + .....+....+..+.|+|||++.++...+..|++.++... ..+++|++++... .+.
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (463)
T TIGR01818 211 GAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFR 290 (463)
T ss_pred CCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcH
Confidence 000 0 0011122233456789999999999999999999998533 2456788776542 234
Q ss_pred hHhhcccc--EEEecCCC--HHHHHHHHHHHHHH----hC---CCCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHh-CC
Q 022641 200 EPLASRCA--KFRFKPLS--EEVMSSRVLHICNE----EG---LNLDAEALSTLSSI-SQGDLRRAITYLQGAARLF-GS 266 (294)
Q Consensus 200 ~~l~~r~~--~i~~~~~~--~~~~~~~l~~~~~~----~~---~~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~-~~ 266 (294)
+.+..|+. .|.++|+. .+++..++.+++.. .+ ..+++++++.|..+ +.||+|++.++++.++... +.
T Consensus 291 ~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~~ 370 (463)
T TIGR01818 291 EDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGD 370 (463)
T ss_pred HHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 56777765 78888887 56777776665542 23 35899999999988 6999999999999988776 45
Q ss_pred CCChhhhhhhc
Q 022641 267 SITSKDLISVS 277 (294)
Q Consensus 267 ~it~~~v~~~~ 277 (294)
.|+.+++...+
T Consensus 371 ~i~~~~l~~~~ 381 (463)
T TIGR01818 371 EVLVSDLPAEL 381 (463)
T ss_pred cccHHhchHHH
Confidence 68888875433
No 211
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.4e-12 Score=110.74 Aligned_cols=205 Identities=17% Similarity=0.209 Sum_probs=135.3
Q ss_pred cchhhcccHHHHHHHHHHHHcC----CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhH-HHHH
Q 022641 59 QVKDVAHQEEVVRVLTNTLETA----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV-VRTK 133 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~----~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 133 (294)
.-..+.|++.....++.|+... ....+.+.|.||+|||.+...+...+.+.. .....+.+|+........ ....
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEEeeccccchHHHHHHH
Confidence 3457789999998888887653 334599999999999999998887773322 223457778776433332 2233
Q ss_pred HHHHHhhhcccCcc--------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh---hcCcceEEEEecCCc---ccc
Q 022641 134 IKTFAAVAVGSGQR--------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMET---YSKVTRFFFICNYIS---RII 199 (294)
Q Consensus 134 ~~~~~~~~~~~~~~--------~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~---~~~~~~ii~~~~~~~---~~~ 199 (294)
...+.....+.+.. .........-++++||+|+|....+..|+.+++- +.....+|.++|... ..+
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 33332221111110 0001112456999999999987767777666653 334555666667543 345
Q ss_pred hHhhcccc----EEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHhh---ccCcHHHHHHHHHHHHHHh
Q 022641 200 EPLASRCA----KFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSI---SQGDLRRAITYLQGAARLF 264 (294)
Q Consensus 200 ~~l~~r~~----~i~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~l~~~---~~G~~r~~~~~l~~~~~~~ 264 (294)
+.|..++. .+.|+|++.+++.+|+...+..+.... -+.+++.++.. ..||+|.++.+++.+...+
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 56666543 799999999999999999887765543 34577777765 4799999999999777655
No 212
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.46 E-value=4.6e-12 Score=115.39 Aligned_cols=200 Identities=17% Similarity=0.109 Sum_probs=126.4
Q ss_pred HcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcc-cCccCCCCCCCCc
Q 022641 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-SGQRRGGYPCPPY 156 (294)
Q Consensus 78 ~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 156 (294)
-.+...+++|.|+||||||++|+++++.+.. ..+|+.+.... ..+.+..-+........+ .....+....+.+
T Consensus 12 v~p~~g~vLl~G~~GtgKs~lar~l~~~~~~----~~pfv~i~~~~--t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~ 85 (589)
T TIGR02031 12 VDPSLGGVAIRARAGTGKTALARALAEILPP----IMPFVELPLGV--TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPR 85 (589)
T ss_pred cCCCcceEEEEcCCCcHHHHHHHHHHHhCCc----CCCeEecCccc--chhhcccchhhhhhhhcCcccCCCCCeeeCCC
Confidence 3444557999999999999999999997622 12344444211 111110001000000001 1122333444667
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhhc-------------CcceEEEEecCCc---ccchHhhcccc-EEEecC-CCHHH
Q 022641 157 KIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNYIS---RIIEPLASRCA-KFRFKP-LSEEV 218 (294)
Q Consensus 157 ~lliiDei~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~~~~~~---~~~~~l~~r~~-~i~~~~-~~~~~ 218 (294)
++|+|||++.+++..++.|++.|++.. ..+.+|.++|... .+.+++.+||. .+.+.. ++.++
T Consensus 86 GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~e 165 (589)
T TIGR02031 86 GVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDL 165 (589)
T ss_pred CcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHH
Confidence 899999999999999999999998643 3456777777654 58889999998 455544 45555
Q ss_pred HHHHHHHHHH-----------------------HhCCCCCHHHHHHHHhhc---c-CcHHHHHHHHHHHHHHh----CCC
Q 022641 219 MSSRVLHICN-----------------------EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF----GSS 267 (294)
Q Consensus 219 ~~~~l~~~~~-----------------------~~~~~~~~~~l~~l~~~~---~-G~~r~~~~~l~~~~~~~----~~~ 267 (294)
..+++++... ...+.++++.+++|++.+ + ..+|..+.++.-+-..+ ...
T Consensus 166 r~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~ 245 (589)
T TIGR02031 166 RVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTE 245 (589)
T ss_pred HHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCC
Confidence 6666655431 123568899888888763 2 23777777776554444 567
Q ss_pred CChhhhhhhcccccCC
Q 022641 268 ITSKDLISVSGYPTGG 283 (294)
Q Consensus 268 it~~~v~~~~~~~~~~ 283 (294)
++.+|+..++..+-.+
T Consensus 246 V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 246 VTEEDLKLAVELVLLP 261 (589)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999887665443
No 213
>PRK15115 response regulator GlrR; Provisional
Probab=99.46 E-value=8.4e-12 Score=111.31 Aligned_cols=191 Identities=19% Similarity=0.211 Sum_probs=125.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhccc--CccCCCCCCCCcEEEE
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIII 160 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lli 160 (294)
..++|+|++|+|||++|+++.+... ....+++.+++..... ..+...+.......... ....+.......+.|+
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~---r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ 233 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASP---RASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcC---CCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEE
Confidence 4699999999999999999988642 2356788888877532 22222111100000000 0112223345567999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------ccchHhhcccc--EEEecCCCH--HH
Q 022641 161 LDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RIIEPLASRCA--KFRFKPLSE--EV 218 (294)
Q Consensus 161 iDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~-------~~~~~l~~r~~--~i~~~~~~~--~~ 218 (294)
|||++.|+...+..|+..++... ..+++|++++..- .+...+..++. .|.++|+.. ++
T Consensus 234 l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eD 313 (444)
T PRK15115 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTED 313 (444)
T ss_pred EEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhcccc
Confidence 99999999999999999998643 1456777776431 23345555655 566677653 45
Q ss_pred HHHHHHHHHHH----hC---CCCCHHHHHHHHhhc-cCcHHHHHHHHHHHHHHh-CCCCChhhhhhhc
Q 022641 219 MSSRVLHICNE----EG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GSSITSKDLISVS 277 (294)
Q Consensus 219 ~~~~l~~~~~~----~~---~~~~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~-~~~it~~~v~~~~ 277 (294)
+..++.+++.. .+ ..+++++++.|..+. +||+|++.++++.++... +..|+.+++...+
T Consensus 314 i~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~i~~~~l~~~~ 381 (444)
T PRK15115 314 IPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQAL 381 (444)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCccChhhhhhhh
Confidence 55454554432 23 248999999999985 999999999999988755 5568888775444
No 214
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.45 E-value=2.2e-12 Score=110.13 Aligned_cols=92 Identities=22% Similarity=0.328 Sum_probs=66.9
Q ss_pred CcEEEEEeCCCCCC------------HHHHHHHHHHHHhhc----------CcceEEEEe----cCCcccchHhhcccc-
Q 022641 155 PYKIIILDEADSMT------------EDAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA- 207 (294)
Q Consensus 155 ~~~lliiDei~~l~------------~~~~~~L~~~l~~~~----------~~~~ii~~~----~~~~~~~~~l~~r~~- 207 (294)
..++|||||+|++. ..+|..|+++++... .+..||+.+ ..+..+.|+|..|+.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 67899999999984 237888999998522 222233332 234567899999999
Q ss_pred EEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHhhc
Q 022641 208 KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS 246 (294)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~l~~l~~~~ 246 (294)
++.+.+++.+++..+|.. .++.+|+ .+++++++.|++.+
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 380 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIA 380 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHH
Confidence 799999999999988832 2334555 47899999998763
No 215
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.44 E-value=5.3e-12 Score=115.16 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=87.4
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc---------------------CcceEEEEecCC--cccchHhhcccc--
Q 022641 153 CPPYKIIILDEADSMTEDAQNALRRTMETYS---------------------KVTRFFFICNYI--SRIIEPLASRCA-- 207 (294)
Q Consensus 153 ~~~~~lliiDei~~l~~~~~~~L~~~l~~~~---------------------~~~~ii~~~~~~--~~~~~~l~~r~~-- 207 (294)
.+..++|+|||++.|++..+..|++.+++.. ..+++|+++|.. ..+.+.|.+||.
T Consensus 215 ~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y 294 (608)
T TIGR00764 215 RAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGY 294 (608)
T ss_pred ECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCC
Confidence 4567899999999999999999999996422 244577777754 467889999987
Q ss_pred -E-EEec---CCCHHHHH---HHHHHHHHHhC--CCCCHHHHHHHHhhc----------cCcHHHHHHHHHHHHHHh---
Q 022641 208 -K-FRFK---PLSEEVMS---SRVLHICNEEG--LNLDAEALSTLSSIS----------QGDLRRAITYLQGAARLF--- 264 (294)
Q Consensus 208 -~-i~~~---~~~~~~~~---~~l~~~~~~~~--~~~~~~~l~~l~~~~----------~G~~r~~~~~l~~~~~~~--- 264 (294)
. +.|. |.+.+... .++.+.+++.| ..++++++..+.+.+ ..+.|.+-++++.+...+
T Consensus 295 ~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~ 374 (608)
T TIGR00764 295 GYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSS 374 (608)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhc
Confidence 2 3443 33444443 44444444553 358999999888542 245888888888875544
Q ss_pred -CCCCChhhhhhhcc
Q 022641 265 -GSSITSKDLISVSG 278 (294)
Q Consensus 265 -~~~it~~~v~~~~~ 278 (294)
...|+.+||.+++.
T Consensus 375 ~~~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 375 GKVYVTAEHVLKAKK 389 (608)
T ss_pred CCceecHHHHHHHHH
Confidence 35699999987644
No 216
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=2.8e-11 Score=95.35 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=127.0
Q ss_pred HHHHHHHHcCCCCc-EEEECCCC-CCHHHHHHHHHHHhcCCC---ccCCcceeecCC-------CCcchhHHHHHHHHHH
Q 022641 71 RVLTNTLETANCPH-MLFYGPPG-TGKTTTALAIAHQLFGPE---LYKSRVLELNAS-------DDRGINVVRTKIKTFA 138 (294)
Q Consensus 71 ~~l~~~l~~~~~~~-ill~Gp~G-~GKT~la~~la~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 138 (294)
..+...+..++..| .+|.|..+ +||..++..+++.++|.. .....+..+... ...+.+.+++....+.
T Consensus 3 ~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~ 82 (263)
T PRK06581 3 ERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLS 82 (263)
T ss_pred HHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHh
Confidence 45666777776655 89999998 999999999999987642 233445555432 2345667776655544
Q ss_pred hhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEecCCCHHH
Q 022641 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~ 218 (294)
..+. .+++.|++|++++.++..+.+.|++.+|+++....+|++|..+..+++.+++||..+.|..+....
T Consensus 83 ~~p~----------~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~ 152 (263)
T PRK06581 83 KTSA----------ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHA 152 (263)
T ss_pred hCcc----------cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHH
Confidence 4332 245679999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHH
Q 022641 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254 (294)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~ 254 (294)
..++....+. ...+.+.++.|.+.+.-|-....
T Consensus 153 ~~e~~~~~~~---p~~~~~~l~~i~~~~~~d~~~w~ 185 (263)
T PRK06581 153 YNELYSQFIQ---PIADNKTLDFINRFTTKDRELWL 185 (263)
T ss_pred HHHHHHHhcc---cccccHHHHHHHHHhhhhHHHHH
Confidence 7777654442 22455557777666544444333
No 217
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.42 E-value=2.5e-11 Score=110.44 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=85.7
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc---------------------CcceEEEEecCC--cccchHhhcccc--
Q 022641 153 CPPYKIIILDEADSMTEDAQNALRRTMETYS---------------------KVTRFFFICNYI--SRIIEPLASRCA-- 207 (294)
Q Consensus 153 ~~~~~lliiDei~~l~~~~~~~L~~~l~~~~---------------------~~~~ii~~~~~~--~~~~~~l~~r~~-- 207 (294)
.+..++|+|||++.|++..+..|++.|++.. -.+++|++++.. ..+++.|.+||.
T Consensus 224 kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~ 303 (637)
T PRK13765 224 KAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGY 303 (637)
T ss_pred ECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccC
Confidence 4567899999999999999999999996432 134677777764 346788888874
Q ss_pred --EEEecC---CCHHHHHHHHHHHHHHh-----CCCCCHHHHHHHHhhc---cCc-------HHHHHHHHHHHHHHh---
Q 022641 208 --KFRFKP---LSEEVMSSRVLHICNEE-----GLNLDAEALSTLSSIS---QGD-------LRRAITYLQGAARLF--- 264 (294)
Q Consensus 208 --~i~~~~---~~~~~~~~~l~~~~~~~-----~~~~~~~~l~~l~~~~---~G~-------~r~~~~~l~~~~~~~--- 264 (294)
.+.|.. -+.+....+++.+.+.. -..++++++..|++.+ .|+ .|.+.+++..+...+
T Consensus 304 ~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~ 383 (637)
T PRK13765 304 GYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSE 383 (637)
T ss_pred eEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhh
Confidence 355543 34566667776555432 2368999999988763 232 677777777766555
Q ss_pred -CCCCChhhhhhhc
Q 022641 265 -GSSITSKDLISVS 277 (294)
Q Consensus 265 -~~~it~~~v~~~~ 277 (294)
.+.++.+++.++.
T Consensus 384 ~~~~i~~~~v~~a~ 397 (637)
T PRK13765 384 GAELTTAEHVLEAK 397 (637)
T ss_pred ccceecHHHHHHHH
Confidence 3347777776554
No 218
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.42 E-value=1.6e-12 Score=112.20 Aligned_cols=153 Identities=17% Similarity=0.201 Sum_probs=93.9
Q ss_pred chhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCc-cCCcceeecCCCCcchhHHH-------
Q 022641 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDDRGINVVR------- 131 (294)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------- 131 (294)
++++++.+...+.+...+..+. +++|+||||||||++|+.++..+..... ....++.+.... ...+.+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsy-SYeDFI~G~rP~~v 250 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSY-SYEDFIQGYRPNGV 250 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccc-cHHHHhcccCCCCC
Confidence 5577788888888888887654 8999999999999999999998854311 111222222110 0000000
Q ss_pred ------HHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH-HHHHHHHHHHhh----------------------
Q 022641 132 ------TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-AQNALRRTMETY---------------------- 182 (294)
Q Consensus 132 ------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~-~~~~L~~~l~~~---------------------- 182 (294)
..+..+..... ....++.+|||||+++.+.. ....++.+++..
T Consensus 251 gy~~~~G~f~~~~~~A~--------~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~i 322 (459)
T PRK11331 251 GFRRKDGIFYNFCQQAK--------EQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYV 322 (459)
T ss_pred CeEecCchHHHHHHHHH--------hcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccC
Confidence 00111100000 01123569999999999854 466677777631
Q ss_pred cCcceEEEEecCCc----ccchHhhccccEEEecCC-CHHHHHHHH
Q 022641 183 SKVTRFFFICNYIS----RIIEPLASRCAKFRFKPL-SEEVMSSRV 223 (294)
Q Consensus 183 ~~~~~ii~~~~~~~----~~~~~l~~r~~~i~~~~~-~~~~~~~~l 223 (294)
+.++.+|.|+|... .++.++++||..+.+.|. +......++
T Consensus 323 P~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l 368 (459)
T PRK11331 323 PENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFL 368 (459)
T ss_pred CCCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHH
Confidence 23556788887664 578999999999999874 444444443
No 219
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.40 E-value=1.2e-11 Score=109.97 Aligned_cols=221 Identities=19% Similarity=0.212 Sum_probs=147.4
Q ss_pred hhcccHHHHHHHHHHHHc-----CCCCcEEEECCCCCCHHHHHHHHHHHhc----CCCccCCcceeecCCCCcchhHHHH
Q 022641 62 DVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLF----GPELYKSRVLELNASDDRGINVVRT 132 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~-----~~~~~ill~Gp~G~GKT~la~~la~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (294)
.+.+++.....+...+.. +....+.+.|-||||||+++..+.+.+. ....-...++++|+-...+...+..
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYE 476 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHH
Confidence 344566666666655543 2223599999999999999999999885 2233456778888877666655554
Q ss_pred HHHHHHhh-hcccCc--------cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh---cCcceEEEEecCCcc---
Q 022641 133 KIKTFAAV-AVGSGQ--------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---SKVTRFFFICNYISR--- 197 (294)
Q Consensus 133 ~~~~~~~~-~~~~~~--------~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~---~~~~~ii~~~~~~~~--- 197 (294)
.+...... ...+.. ...........||+|||+|.|-...++.|..+++-. .....+|.++|....
T Consensus 477 ~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr 556 (767)
T KOG1514|consen 477 KIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPER 556 (767)
T ss_pred HHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHH
Confidence 44432211 111100 001123345679999999999776777777777643 345666667776442
Q ss_pred -cchHhhcccc--EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh---ccCcHHHHHHHHHHHHHHhCC-----
Q 022641 198 -IIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI---SQGDLRRAITYLQGAARLFGS----- 266 (294)
Q Consensus 198 -~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~---~~G~~r~~~~~l~~~~~~~~~----- 266 (294)
+...+.+|.. .+.|.|++.+++.+++...++.. -.++.++++.+++. ..||.|.+++++..|+..+.+
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~ 635 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG 635 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc
Confidence 2223445554 89999999999999998777543 34678888887765 579999999999999988722
Q ss_pred ------CCChhhhhhhcccccCC
Q 022641 267 ------SITSKDLISVSGYPTGG 283 (294)
Q Consensus 267 ------~it~~~v~~~~~~~~~~ 283 (294)
.++..++..++.++.+.
T Consensus 636 k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 636 KLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred cccccceeehHHHHHHHHHHhhh
Confidence 25777777777665544
No 220
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.39 E-value=3.6e-11 Score=111.55 Aligned_cols=157 Identities=17% Similarity=0.109 Sum_probs=98.1
Q ss_pred hhhhcCCCcchhhcccHHHHHHHHHHHHcCCC---------------------CcEEEECCCCCCHHHHHHHHHHHhcCC
Q 022641 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANC---------------------PHMLFYGPPGTGKTTTALAIAHQLFGP 109 (294)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~---------------------~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (294)
..+.+...-...+.|++.++..+.-.+..|.. .+++|+|+||||||.+|+.+++.....
T Consensus 440 i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~ 519 (915)
T PTZ00111 440 IYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRS 519 (915)
T ss_pred HHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcc
Confidence 33444444445778999999888777765531 159999999999999999998854211
Q ss_pred C-ccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----
Q 022641 110 E-LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----- 183 (294)
Q Consensus 110 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~----- 183 (294)
. ..+..+..+++... ...............+....+..++++|||++.++...+..|+++|+...
T Consensus 520 ~ytsG~~~s~vgLTa~---------~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~K 590 (915)
T PTZ00111 520 IYTSGKSSSSVGLTAS---------IKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAK 590 (915)
T ss_pred ccCCCCCCccccccch---------hhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEec
Confidence 0 01112222211110 00000001111223344455677899999999999999999999997532
Q ss_pred --------CcceEEEEecCCc-------------ccchHhhcccc--EEEecCCCH
Q 022641 184 --------KVTRFFFICNYIS-------------RIIEPLASRCA--KFRFKPLSE 216 (294)
Q Consensus 184 --------~~~~ii~~~~~~~-------------~~~~~l~~r~~--~i~~~~~~~ 216 (294)
..+.+|.++|+.. .+++++++||. .+-+..++.
T Consensus 591 aGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 591 AGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred CCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCCh
Confidence 4567888887632 36789999997 334455544
No 221
>PRK12377 putative replication protein; Provisional
Probab=99.39 E-value=2.8e-12 Score=103.85 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=84.9
Q ss_pred hhcCCCcchhhc----ccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc
Q 022641 53 EKYRPKQVKDVA----HQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (294)
Q Consensus 53 ~~~~~~~~~~~~----g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 126 (294)
+.+...+|+.+. ++..++......... ....+++|+|||||||||||.++++.+... +..+..+...+
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~i~~~~--- 139 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIVVTVPD--- 139 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEHHH---
Confidence 445555676664 333344433333321 223579999999999999999999998532 22233332221
Q ss_pred hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCC--CCHHHHHHHHHHHHhhcC-cceEEEEecCCcc-----c
Q 022641 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS--MTEDAQNALRRTMETYSK-VTRFFFICNYISR-----I 198 (294)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~--l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~~-----~ 198 (294)
+...+....... ...........+.++|||||++. .+...++.|+++++.++. ...+|++||.... +
T Consensus 140 ---l~~~l~~~~~~~--~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~ 214 (248)
T PRK12377 140 ---VMSRLHESYDNG--QSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLL 214 (248)
T ss_pred ---HHHHHHHHHhcc--chHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHh
Confidence 111111110000 00000001123456999999954 466778899999998886 4678999986532 2
Q ss_pred chHhhccc-----cEEEecCCC
Q 022641 199 IEPLASRC-----AKFRFKPLS 215 (294)
Q Consensus 199 ~~~l~~r~-----~~i~~~~~~ 215 (294)
.+++.+|+ ..|.|...|
T Consensus 215 ~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 215 GERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred hHHHHHHHhhCCCeEEEeCCcC
Confidence 33444443 246665544
No 222
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.39 E-value=6e-13 Score=94.73 Aligned_cols=113 Identities=25% Similarity=0.217 Sum_probs=61.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcc-cCccCCCCCCCCcEEEEEe
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-SGQRRGGYPCPPYKIIILD 162 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lliiD 162 (294)
|++|.|+||+|||++|+++|+.+ +..+..+......-...+... .+...... .....+-.. ..++++|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~------~~~f~RIq~tpdllPsDi~G~--~v~~~~~~~f~~~~GPif---~~ill~D 69 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL------GLSFKRIQFTPDLLPSDILGF--PVYDQETGEFEFRPGPIF---TNILLAD 69 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT------T--EEEEE--TT--HHHHHEE--EEEETTTTEEEEEE-TT----SSEEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc------CCceeEEEecCCCCcccceee--eeeccCCCeeEeecChhh---hceeeec
Confidence 58999999999999999999998 666666655432222222111 00000000 000111111 2499999
Q ss_pred CCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-----ccchHhhcccc
Q 022641 163 EADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-----RIIEPLASRCA 207 (294)
Q Consensus 163 ei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~-----~~~~~l~~r~~ 207 (294)
|+++.++..+..|+++|+++. ....+|.+.|... .++.++++||.
T Consensus 70 EiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 70 EINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp TGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 999999999999999998644 3344555666543 57888888874
No 223
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.39 E-value=7.5e-13 Score=101.57 Aligned_cols=106 Identities=24% Similarity=0.318 Sum_probs=68.0
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEe
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD 162 (294)
.+++|+||+|||||.+|+++++.+.. ....+++.++++...........+..+......... .....||+||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~--~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~------~~~~gVVllD 75 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV--GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVG------AEEGGVVLLD 75 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHH------HHHHTEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc--CCccchHHHhhhcccccchHHhhhhhhhhcccceee------ccchhhhhhH
Confidence 36999999999999999999999941 112467777776655422211111211111110000 0112399999
Q ss_pred CCCCCCH-----------HHHHHHHHHHHhhc-----------CcceEEEEecCCc
Q 022641 163 EADSMTE-----------DAQNALRRTMETYS-----------KVTRFFFICNYIS 196 (294)
Q Consensus 163 ei~~l~~-----------~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~ 196 (294)
|+|+.++ ..++.|++++++.. .++.+|+|+|...
T Consensus 76 EidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 76 EIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp TGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred HHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9999999 99999999998532 3556788887543
No 224
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.38 E-value=8.9e-11 Score=99.37 Aligned_cols=222 Identities=15% Similarity=0.077 Sum_probs=134.0
Q ss_pred CcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCcc-CCcc--------------------
Q 022641 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRV-------------------- 116 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~-~~~~-------------------- 116 (294)
..|..++|++..+..|....-......++|.|+.|+||||++++|+..|-..... +++|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccc
Confidence 4567889999999888766656666679999999999999999999988311110 0000
Q ss_pred -----------eeecCCCCcchhHHHHHHHHHHhh-hcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh--
Q 022641 117 -----------LELNASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-- 182 (294)
Q Consensus 117 -----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~-- 182 (294)
-.++.......+.+-..+.-.... .......++....++++|+++||++.|+...++.|++.++..
T Consensus 94 ~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n 173 (423)
T COG1239 94 LEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVN 173 (423)
T ss_pred cccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCc
Confidence 001111111111111000000000 011223455566788999999999999999999999999863
Q ss_pred -----------cCcceEEEEecCC-cccchHhhcccc-EEEecCC-CHHHHHHHHHHHHHHh------------------
Q 022641 183 -----------SKVTRFFFICNYI-SRIIEPLASRCA-KFRFKPL-SEEVMSSRVLHICNEE------------------ 230 (294)
Q Consensus 183 -----------~~~~~ii~~~~~~-~~~~~~l~~r~~-~i~~~~~-~~~~~~~~l~~~~~~~------------------ 230 (294)
+..+.+|.|+|.. ..+.+.|+.||. .+...++ +.++..+++.+...-.
T Consensus 174 ~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR 253 (423)
T COG1239 174 DVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALR 253 (423)
T ss_pred eeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHH
Confidence 2455567777765 457889999987 6666555 4566666666544311
Q ss_pred -----------CCCCCHHHHHHHHhhc-----cCcHHHHHHHHHH----HHHHhCCCCChhhhhhhcccc
Q 022641 231 -----------GLNLDAEALSTLSSIS-----QGDLRRAITYLQG----AARLFGSSITSKDLISVSGYP 280 (294)
Q Consensus 231 -----------~~~~~~~~l~~l~~~~-----~G~~r~~~~~l~~----~~~~~~~~it~~~v~~~~~~~ 280 (294)
.+.++++....+++.| .| -|..+..... ++.....+++.++++.+....
T Consensus 254 ~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g-~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 254 ARIIAARSLLSEVELDDDAETKIAELCARLAVDG-HRADIVVVRAAKALAALRGRTEVEEEDIREAAELA 322 (423)
T ss_pred HHHHHHHhccccccCcHHHHHHHHHHHHHhccCC-CchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhh
Confidence 2346666666666653 22 3333333332 222224567778887766543
No 225
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.4e-11 Score=114.99 Aligned_cols=186 Identities=20% Similarity=0.134 Sum_probs=128.9
Q ss_pred CcchhhcccHHHHHHHHHHHHc-------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC
Q 022641 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 124 (294)
..|+++-|.+..+..|++.+.. ..++.++++||||||||..|++++..+. .......++.-.+.+-
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s-~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACS-RGNRKISFFMRKGADC 340 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhc-ccccccchhhhcCchh
Confidence 3677888888899888887632 2234499999999999999999998872 1222333333333332
Q ss_pred cch------hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhhcC--c
Q 022641 125 RGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYSK--V 185 (294)
Q Consensus 125 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~-----------~~~~~L~~~l~~~~~--~ 185 (294)
.++ ..++-.+.... ...+.+|++||||.|.+ .....|+.+|+.... .
T Consensus 341 lskwvgEaERqlrllFeeA~--------------k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgq 406 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEAQ--------------KTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQ 406 (1080)
T ss_pred hccccCcHHHHHHHHHHHHh--------------ccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCc
Confidence 221 12222222222 22346999999997742 245567888876554 4
Q ss_pred ceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHH
Q 022641 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (294)
Q Consensus 186 ~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~ 258 (294)
+++|.+||.+..+.+++++ ||. .+.|+-|+.+...+++...-.+..-.++...+..+++.+.|..+.-+..|-
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 5567778999999999966 676 788988889999999877666667778999999999998887776665444
No 226
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3e-12 Score=103.80 Aligned_cols=184 Identities=22% Similarity=0.292 Sum_probs=113.3
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHc---------------CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCC
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET---------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKS 114 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~---------------~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~ 114 (294)
|-.+..+..--+.++||+.+++.|.-++.+ -..+|+++.||+|+|||.||+.+|+.+ +.
T Consensus 50 PtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L------nV 123 (408)
T COG1219 50 PTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL------NV 123 (408)
T ss_pred CChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh------CC
Confidence 333333333334567998888655333221 123579999999999999999999999 77
Q ss_pred cceeecCCCCcc----hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC--------------HHHHHHHH
Q 022641 115 RVLELNASDDRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALR 176 (294)
Q Consensus 115 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~--------------~~~~~~L~ 176 (294)
+|...++..... ...+...+..+...... ....+.+++|+|||+|.+. ..+++.|+
T Consensus 124 PFaiADATtLTEAGYVGEDVENillkLlqaady------dV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALL 197 (408)
T COG1219 124 PFAIADATTLTEAGYVGEDVENILLKLLQAADY------DVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALL 197 (408)
T ss_pred CeeeccccchhhccccchhHHHHHHHHHHHccc------CHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHH
Confidence 777666554322 12333333333322110 0122456799999999873 34789999
Q ss_pred HHHHhh-------------cC------cceEEEEe------------------------cC-------------------
Q 022641 177 RTMETY-------------SK------VTRFFFIC------------------------NY------------------- 194 (294)
Q Consensus 177 ~~l~~~-------------~~------~~~ii~~~------------------------~~------------------- 194 (294)
++++.- .. ..-+++++ +.
T Consensus 198 KiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepe 277 (408)
T COG1219 198 KIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPE 277 (408)
T ss_pred HHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChH
Confidence 999731 11 11133332 00
Q ss_pred ---CcccchHhhcccc-EEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHhh
Q 022641 195 ---ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSI 245 (294)
Q Consensus 195 ---~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~l~~l~~~ 245 (294)
.+.+.|+|..|+. +-.+.+++.+.+..+|.. ++...++ .++++++..+++.
T Consensus 278 DLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~ 345 (408)
T COG1219 278 DLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKK 345 (408)
T ss_pred HHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHH
Confidence 0125678888988 568899999888877743 2223343 3789999998876
No 227
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.35 E-value=2.6e-12 Score=98.26 Aligned_cols=143 Identities=19% Similarity=0.205 Sum_probs=83.3
Q ss_pred hcccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhh
Q 022641 63 VAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (294)
Q Consensus 63 ~~g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (294)
++|....+..+.+.+.. ....+++|+|++||||+.+|+++.+. +.....+|+.++|..... ..+...+-.....
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~---s~r~~~pfi~vnc~~~~~-~~~e~~LFG~~~~ 76 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN---SPRKNGPFISVNCAALPE-ELLESELFGHEKG 76 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC---STTTTS-EEEEETTTS-H-HHHHHHHHEBCSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh---hhcccCCeEEEehhhhhc-chhhhhhhccccc
Confidence 35555555555555433 22346999999999999999999873 334467999999987633 2222211111000
Q ss_pred h-cc-cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------ccch
Q 022641 141 A-VG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RIIE 200 (294)
Q Consensus 141 ~-~~-~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~-------~~~~ 200 (294)
. .+ .....+....+..+.|+|||++.|++..|..|++++++.. .++++|++|+..- .+.+
T Consensus 77 ~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~ 156 (168)
T PF00158_consen 77 AFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFRE 156 (168)
T ss_dssp SSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-H
T ss_pred cccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCChH
Confidence 0 00 0011122233567799999999999999999999998532 3667888887542 2345
Q ss_pred HhhccccEE
Q 022641 201 PLASRCAKF 209 (294)
Q Consensus 201 ~l~~r~~~i 209 (294)
.|..|+..+
T Consensus 157 dLy~rL~~~ 165 (168)
T PF00158_consen 157 DLYYRLNVF 165 (168)
T ss_dssp HHHHHHTTE
T ss_pred HHHHHhceE
Confidence 555555443
No 228
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.35 E-value=7e-12 Score=105.34 Aligned_cols=191 Identities=14% Similarity=0.108 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc-hhHHHHHHHHHHhhhc
Q 022641 66 QEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG-INVVRTKIKTFAAVAV 142 (294)
Q Consensus 66 ~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 142 (294)
++..++.|.++|.. .....+.|+|++|+|||++|..+++.......++. ++-++...... ..........+.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~-v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDG-VIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTE-EEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccc-cccccccccccccccccccccccccccc
Confidence 35677888888887 44455999999999999999999988421222222 22223222222 2223332222221111
Q ss_pred cc--Ccc-------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEecC
Q 022641 143 GS--GQR-------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213 (294)
Q Consensus 143 ~~--~~~-------~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~ 213 (294)
.. ... .......++.+||+|+++... ..+.+...+........+|+||+... +..........+.+.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~-v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRS-VAGSLGGTDKVIELEP 156 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGG-GGTTHHSCEEEEECSS
T ss_pred ccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccc-cccccccccccccccc
Confidence 00 000 000112447899999987653 44445555555556778888887643 3333333366899999
Q ss_pred CCHHHHHHHHHHHHHHhC---CCCCHHHHHHHHhhccCcHHHHHHHHHHH
Q 022641 214 LSEEVMSSRVLHICNEEG---LNLDAEALSTLSSISQGDLRRAITYLQGA 260 (294)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~---~~~~~~~l~~l~~~~~G~~r~~~~~l~~~ 260 (294)
++.++..+++.+.+.... ..-.++..+.|++.|+|.|-.+..+....
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998875443 12235667889999999887766655544
No 229
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.33 E-value=1.6e-10 Score=91.34 Aligned_cols=231 Identities=17% Similarity=0.156 Sum_probs=139.3
Q ss_pred hccccccCCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee
Q 022641 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (294)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (294)
.++.......|+....+|..+-....+...+..+...+..++ ..+.++|+.|+|||.+.+++...+.... ..++.+
T Consensus 10 ~l~~~g~~~~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~~~d~---~~~v~i 85 (269)
T COG3267 10 LLNHFGFSRLPFSWDIQPGLDYWAADHNEALLMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASLNEDQ---VAVVVI 85 (269)
T ss_pred HHHHhhhccCCCccchhhhhhhhhhhhhHHHHHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhcCCCc---eEEEEe
Confidence 344444555566666666555555556666666666665544 3689999999999999997776663211 111333
Q ss_pred cCCCCcchhHHHHHHHHHHhhhcccCc----------cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH---hhcCcc
Q 022641 120 NASDDRGINVVRTKIKTFAAVAVGSGQ----------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTME---TYSKVT 186 (294)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~---~~~~~~ 186 (294)
+.............+..+...+..... ........++.++++||++.+..+..+.|+-..+ +.....
T Consensus 86 ~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l 165 (269)
T COG3267 86 DKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLL 165 (269)
T ss_pred cCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCce
Confidence 333322222222222222110000000 0000111233799999999999888887765554 333445
Q ss_pred eEEEEecCC------cccchHhhccccE-EEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHhhccCcHHHHHHH
Q 022641 187 RFFFICNYI------SRIIEPLASRCAK-FRFKPLSEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAITY 256 (294)
Q Consensus 187 ~ii~~~~~~------~~~~~~l~~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~l~~l~~~~~G~~r~~~~~ 256 (294)
.+++++... .....++..|+.+ +.++|++.++...+++..++..+.. ++++++..+...+.|-||.+-++
T Consensus 166 ~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~ 245 (269)
T COG3267 166 SIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNL 245 (269)
T ss_pred eeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHH
Confidence 566666322 1234566779986 9999999999999999999876554 78999999999999988876665
Q ss_pred HHHHHHH---h-CCCCChhhhh
Q 022641 257 LQGAARL---F-GSSITSKDLI 274 (294)
Q Consensus 257 l~~~~~~---~-~~~it~~~v~ 274 (294)
+..|-.- + +..|+...++
T Consensus 246 ~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 246 ATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred HHHHHHHHHHcCCCccchhhcc
Confidence 5543322 2 3446655543
No 230
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=9.6e-12 Score=107.15 Aligned_cols=194 Identities=22% Similarity=0.180 Sum_probs=118.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCC-cceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEe
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD 162 (294)
.++|+||||||||.+|+.+.+-+...+..-. ..-.++..-..+...++.++..........+. .+.-++||+|
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~------~SgLHIIIFD 331 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGA------NSGLHIIIFD 331 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCc------cCCceEEEeh
Confidence 3999999999999999999999854332110 00012222334556677777665544322221 1234699999
Q ss_pred CCCCCC-------------HHHHHHHHHHHHhhc--CcceEEEEecCCcccchHhhc--ccc-EEEecCCCHHHHHHHHH
Q 022641 163 EADSMT-------------EDAQNALRRTMETYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVL 224 (294)
Q Consensus 163 ei~~l~-------------~~~~~~L~~~l~~~~--~~~~ii~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~ 224 (294)
|+|.+. ....+.|+.-|+.-. .+..+|..||....++.+|++ |+. .+++.-|+++-+.++++
T Consensus 332 EiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~ 411 (744)
T KOG0741|consen 332 EIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILK 411 (744)
T ss_pred hhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEE
Confidence 999762 346788887776433 467788889999999999987 776 57888888877776665
Q ss_pred HHHH---HhCCCCCHHHHHHHHhhc----cCcHHHHHHHHHHHHHHh----C------------CCCChhhhhhhccccc
Q 022641 225 HICN---EEGLNLDAEALSTLSSIS----QGDLRRAITYLQGAARLF----G------------SSITSKDLISVSGYPT 281 (294)
Q Consensus 225 ~~~~---~~~~~~~~~~l~~l~~~~----~G~~r~~~~~l~~~~~~~----~------------~~it~~~v~~~~~~~~ 281 (294)
-.-+ .++.-=++-.++.|+..+ +..+..++...+.-|..- + -.++++|+..++.++.
T Consensus 412 IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 412 IHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred hhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 4332 233322233366666653 333333333333222110 1 1378888888877655
Q ss_pred CC
Q 022641 282 GG 283 (294)
Q Consensus 282 ~~ 283 (294)
+.
T Consensus 492 PA 493 (744)
T KOG0741|consen 492 PA 493 (744)
T ss_pred cc
Confidence 54
No 231
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.31 E-value=2.2e-10 Score=102.22 Aligned_cols=191 Identities=19% Similarity=0.212 Sum_probs=126.0
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhccc--CccCCCCCCCCcEEEE
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRGGYPCPPYKIII 160 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lli 160 (294)
..++++|.+|+||+++++++.... .....+++.+++..... ..+...+.......... ....+....+..+.|+
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s---~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ 238 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASS---ARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcC---CCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEE
Confidence 459999999999999999998754 22356888888886532 22222221111000000 0112223445678999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCCc-------ccchHhhcccc--EEEecCCCH--HH
Q 022641 161 LDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RIIEPLASRCA--KFRFKPLSE--EV 218 (294)
Q Consensus 161 iDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~~-------~~~~~l~~r~~--~i~~~~~~~--~~ 218 (294)
|||++.|+...+..|+..++... ..+++|++|+... .+.+.+..++. .+.++|+.. ++
T Consensus 239 ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~D 318 (441)
T PRK10365 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRRED 318 (441)
T ss_pred EeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchh
Confidence 99999999999999999997633 1345777775432 23455556665 566666653 35
Q ss_pred HHHHHHHHHHH----hC---CCCCHHHHHHHHhhc-cCcHHHHHHHHHHHHHHh-CCCCChhhhhhhc
Q 022641 219 MSSRVLHICNE----EG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GSSITSKDLISVS 277 (294)
Q Consensus 219 ~~~~l~~~~~~----~~---~~~~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~-~~~it~~~v~~~~ 277 (294)
+..++.+++.+ .+ ..+++++++.|..+. +||+|++.++++.++... +..|+.+++...+
T Consensus 319 i~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 319 IPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAI 386 (441)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCccchHhCchhh
Confidence 55555555443 23 348999999999985 999999999999988665 5568888876443
No 232
>PRK08116 hypothetical protein; Validated
Probab=99.30 E-value=3.4e-11 Score=99.34 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=86.9
Q ss_pred hhhcCCCcchhhccc---HHHHHHHHHHHHc----C-CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC
Q 022641 52 VEKYRPKQVKDVAHQ---EEVVRVLTNTLET----A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (294)
Q Consensus 52 ~~~~~~~~~~~~~g~---~~~~~~l~~~l~~----~-~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 123 (294)
.+++...+|+.+... ..+.......+.. . ....++|+|++|+||||||.++++.+... +..++.++..+
T Consensus 76 ~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ 152 (268)
T PRK08116 76 DEKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQ 152 (268)
T ss_pred CHHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHH
Confidence 456666777766532 2233333333321 1 22349999999999999999999998432 23344443222
Q ss_pred CcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCC--CCCHHHHHHHHHHHHhhcC-cceEEEEecCCcc---
Q 022641 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD--SMTEDAQNALRRTMETYSK-VTRFFFICNYISR--- 197 (294)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~--~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~~--- 197 (294)
+...+......................++|+|||++ ..+...++.|+.+++.++. ...+|+|||....
T Consensus 153 ------ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 153 ------LLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred ------HHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 111111000000000000000011234699999995 4566678889999987653 4568899987532
Q ss_pred --cchHhhcc----ccEEEecCCCH
Q 022641 198 --IIEPLASR----CAKFRFKPLSE 216 (294)
Q Consensus 198 --~~~~l~~r----~~~i~~~~~~~ 216 (294)
+..++.+| |..+.+..++.
T Consensus 227 ~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 227 NQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 34566666 44677777663
No 233
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.29 E-value=4.3e-10 Score=92.90 Aligned_cols=214 Identities=19% Similarity=0.206 Sum_probs=142.3
Q ss_pred CCcchhhcccHHHHHHHHHHHHcCC--CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHH
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~~--~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (294)
...|+.+++....++.+..-...-. -..++|.|.+||||-.+|++.... +.....+|+.+||........-.+.
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~---S~R~~~pFlalNCA~lPe~~aEsEl- 275 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLA---SPRHSKPFLALNCASLPEDAAESEL- 275 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhc---CcccCCCeeEeecCCCchhHhHHHH-
Confidence 3467788887666655544332211 124999999999999999987543 4455778999998876443222222
Q ss_pred HHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEecCC-------c
Q 022641 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~~~~-------~ 196 (294)
.....+...+.+....+..+-+++|||..+++..+..|+..+.+.. .++++|++|..+ .
T Consensus 276 ---FG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g 352 (511)
T COG3283 276 ---FGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKG 352 (511)
T ss_pred ---hcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcC
Confidence 1222223334455556778899999999999999999999997533 456788887543 1
Q ss_pred ccchHhhccccEE--EecCCCH------HHHHHHHHHHHHHhCCC---CCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHh
Q 022641 197 RIIEPLASRCAKF--RFKPLSE------EVMSSRVLHICNEEGLN---LDAEALSTLSSI-SQGDLRRAITYLQGAARLF 264 (294)
Q Consensus 197 ~~~~~l~~r~~~i--~~~~~~~------~~~~~~l~~~~~~~~~~---~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~ 264 (294)
.....+..|..++ +++|+-+ .-...++.+++.+.++. ++++.+.++.++ +.||+|++-|.+=.++..-
T Consensus 353 ~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 353 KFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred chHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 2345566677654 4455432 23345566667666654 789999999987 7999999999777665444
Q ss_pred -CCCCChhhhhhhc
Q 022641 265 -GSSITSKDLISVS 277 (294)
Q Consensus 265 -~~~it~~~v~~~~ 277 (294)
+..++.+++.-..
T Consensus 433 Eg~~l~i~~i~Lp~ 446 (511)
T COG3283 433 EGYELRIEDILLPD 446 (511)
T ss_pred ccCccchhhcccCC
Confidence 5667777665443
No 234
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.29 E-value=1.6e-10 Score=102.43 Aligned_cols=219 Identities=22% Similarity=0.226 Sum_probs=126.8
Q ss_pred CcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec------CCCC-------
Q 022641 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN------ASDD------- 124 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~------~~~~------- 124 (294)
.++.++.|+...++.+.-.+. ...+++|+||+|+|||++++.+...+... .+...+++. ....
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~--~G~~llliG~~GsGKTtLak~L~gllpp~--~g~e~le~~~i~s~~g~~~~~~~~~~ 263 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAA--GGHNLLLIGPPGTGKTMLASRINGLLPDL--SNEEALESAAILSLVNAESVQKQWRQ 263 (506)
T ss_pred cCeEEEECcHHHHhhhheecc--CCcEEEEECCCCCcHHHHHHHHhccCCCC--CCcEEEecchhhhhhccccccCCcCC
Confidence 367788899888777653333 33589999999999999999998766211 111111110 0000
Q ss_pred cchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh-------------cCcceEEEE
Q 022641 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTRFFFI 191 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~-------------~~~~~ii~~ 191 (294)
+.....-.......-...+....++....+.+++|+|||++.++...++.|++.|++. +..+.+|.+
T Consensus 264 rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa 343 (506)
T PRK09862 264 RPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAA 343 (506)
T ss_pred CCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEe
Confidence 0000000000000001111123445566678899999999999999999999999753 345667888
Q ss_pred ecCCc---------------------ccchHhhcccc-EEEecCCCHHHHH----------HHHHHHHH------Hh---
Q 022641 192 CNYIS---------------------RIIEPLASRCA-KFRFKPLSEEVMS----------SRVLHICN------EE--- 230 (294)
Q Consensus 192 ~~~~~---------------------~~~~~l~~r~~-~i~~~~~~~~~~~----------~~l~~~~~------~~--- 230 (294)
+|... .+..++++||. .+.+++++.+++. .+-+++.+ ..
T Consensus 344 ~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~ 423 (506)
T PRK09862 344 MNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNK 423 (506)
T ss_pred ecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHH
Confidence 77531 36668999998 5788877432211 11111110 00
Q ss_pred -C-----------CCCCHHHHHHHH---hhccCcHHHHHHHHHHHHHHh----CCCCChhhhhhhcccc
Q 022641 231 -G-----------LNLDAEALSTLS---SISQGDLRRAITYLQGAARLF----GSSITSKDLISVSGYP 280 (294)
Q Consensus 231 -~-----------~~~~~~~l~~l~---~~~~G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~ 280 (294)
+ +.++++..+.+. ...+=+.|....+++-+...+ ...|+.+|+.+++.-.
T Consensus 424 ~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 424 LNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred HhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 1 223444433222 223345777777777555444 5679999999988754
No 235
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.27 E-value=2.3e-11 Score=98.31 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=86.9
Q ss_pred hhhcCCCcchhhc----ccHHHHHHHHHHHHcC--CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc
Q 022641 52 VEKYRPKQVKDVA----HQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (294)
Q Consensus 52 ~~~~~~~~~~~~~----g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 125 (294)
.+.+.+.+|+.+. ++..++..+..+.... ...+++|+|++|||||+|+.++++++... +..+..+...+
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~it~~~-- 137 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLIITVAD-- 137 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEHHH--
Confidence 3456677787765 2334555555555432 22469999999999999999999998432 23333332211
Q ss_pred chhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHHhhcC-cceEEEEecCCcc-----
Q 022641 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALRRTMETYSK-VTRFFFICNYISR----- 197 (294)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~--~~~~L~~~l~~~~~-~~~ii~~~~~~~~----- 197 (294)
+...+...... .............+.++|+|||++..... ....|+++++.++. ...+|++||....
T Consensus 138 ----l~~~l~~~~~~-~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~ 212 (244)
T PRK07952 138 ----IMSAMKDTFSN-SETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL 212 (244)
T ss_pred ----HHHHHHHHHhh-ccccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 11111110000 00000000001224569999999887533 45678889987765 6778999987532
Q ss_pred cchHhhccc-----cEEEecCCC
Q 022641 198 IIEPLASRC-----AKFRFKPLS 215 (294)
Q Consensus 198 ~~~~l~~r~-----~~i~~~~~~ 215 (294)
+.+++.+|+ ..+.|...+
T Consensus 213 ~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 213 LGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred hChHHHHHHHHCCceEEEeeCCc
Confidence 334444544 356666544
No 236
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.4e-10 Score=88.80 Aligned_cols=136 Identities=17% Similarity=0.127 Sum_probs=109.7
Q ss_pred CcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEec
Q 022641 114 SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
...+.+-..+...++.++..+........ .. -++|++++.++..+.+.|++.+++++.++.+|++|.
T Consensus 26 ~~~~~~f~~~~i~Vd~iReii~~~~~~~~------------~~-k~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~ 92 (206)
T PRK08485 26 KKNLRFFIKEEFKIEDAKEVIAEAYIAES------------EE-KIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAK 92 (206)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHhhCCC------------Cc-EEEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 33333334446677778777666544321 11 346889999999999999999999999999999999
Q ss_pred CCcccchHhhccccE-------------EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHH
Q 022641 194 YISRIIEPLASRCAK-------------FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (294)
Q Consensus 194 ~~~~~~~~l~~r~~~-------------i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~ 260 (294)
.+..+++.+++||.. +.+.+++.+++.+.+.+ +.+++....+++++.|+....|.+|.++.+.+..
T Consensus 93 ~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~ 171 (206)
T PRK08485 93 SKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEE 171 (206)
T ss_pred ChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHH
Confidence 999999999999985 77899999999999998 6777887888999999999999999997776665
Q ss_pred HHH
Q 022641 261 ARL 263 (294)
Q Consensus 261 ~~~ 263 (294)
..+
T Consensus 172 l~~ 174 (206)
T PRK08485 172 LEY 174 (206)
T ss_pred HHH
Confidence 544
No 237
>PF13173 AAA_14: AAA domain
Probab=99.26 E-value=7.6e-11 Score=86.52 Aligned_cols=120 Identities=26% Similarity=0.354 Sum_probs=77.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHH-HHHHHHhhhcccCccCCCCCCCCcEEEEE
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-KIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~llii 161 (294)
+.++|+||+||||||+++.+++.+. ....++.++..+......... ....+..... .+..+|+|
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~i 67 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPDLLEYFLELIK-----------PGKKYIFI 67 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhhhHHHHHHhhc-----------cCCcEEEE
Confidence 4589999999999999999999883 124556666655433221110 1111111100 12359999
Q ss_pred eCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcc----cchHhhccccEEEecCCCHHHH
Q 022641 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR----IIEPLASRCAKFRFKPLSEEVM 219 (294)
Q Consensus 162 Dei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~----~~~~l~~r~~~i~~~~~~~~~~ 219 (294)
||++.++ .....+..+.+.. ....+++++..... ....+..|...+.+.|++-.|.
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 9999996 4555566565543 45678887765433 3456777888999999998764
No 238
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=99.26 E-value=7.9e-11 Score=101.02 Aligned_cols=228 Identities=18% Similarity=0.191 Sum_probs=148.9
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCC------------CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCc
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~------------~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~ 115 (294)
.-++.+++...-..++.|++++++.|+-.|-.+.. =|++|.|.||+.||.|++.+.+-.. ..
T Consensus 329 ~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlap------Rg 402 (721)
T KOG0482|consen 329 EGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAP------RG 402 (721)
T ss_pred cccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCc------cc
Confidence 34667777777777999999999999888754311 1499999999999999999988761 12
Q ss_pred cee-ecCCCCcchhHHHHHHHHHHhhhcccC--ccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-----------
Q 022641 116 VLE-LNASDDRGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET----------- 181 (294)
Q Consensus 116 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~----------- 181 (294)
++. -.++++.+... ..+. -+.... ..-+....+..++++|||+|++.......+..+|+.
T Consensus 403 vYTTGrGSSGVGLTA--AVmk----DpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~ 476 (721)
T KOG0482|consen 403 VYTTGRGSSGVGLTA--AVMK----DPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGIN 476 (721)
T ss_pred ceecCCCCCccccch--hhhc----CCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccc
Confidence 221 12333333211 1111 111111 111234456788999999999998888888888874
Q ss_pred --hcCcceEEEEecCCc-------------ccchHhhccccEE-------------------------------EecCCC
Q 022641 182 --YSKVTRFFFICNYIS-------------RIIEPLASRCAKF-------------------------------RFKPLS 215 (294)
Q Consensus 182 --~~~~~~ii~~~~~~~-------------~~~~~l~~r~~~i-------------------------------~~~~~~ 215 (294)
....++++.++|+.. .++.+|++||..+ .|.|++
T Consensus 477 TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~ 556 (721)
T KOG0482|consen 477 TTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLD 556 (721)
T ss_pred cchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCC
Confidence 223344555555432 2678899988532 566777
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHhh--------------ccCcHHHHHHHHHHHHHHh----CCCCChhhhhhhc
Q 022641 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSI--------------SQGDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (294)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~--------------~~G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~ 277 (294)
.+.++.++. .|+.....++++..++|... +.-.+|.++.++......+ ...+..++|.+++
T Consensus 557 ~~~mR~yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EAL 635 (721)
T KOG0482|consen 557 PNLMRRYIS-LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEAL 635 (721)
T ss_pred HHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 788888774 45555667888887777643 1346899888888766665 5668899999988
Q ss_pred ccccCCCCCcc
Q 022641 278 GYPTGGSGGAF 288 (294)
Q Consensus 278 ~~~~~~~~~~~ 288 (294)
....-...+.+
T Consensus 636 RLme~sK~sL~ 646 (721)
T KOG0482|consen 636 RLMEMSKDSLY 646 (721)
T ss_pred HHHHhhhcccc
Confidence 77554444333
No 239
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.25 E-value=6.1e-10 Score=100.82 Aligned_cols=210 Identities=13% Similarity=0.092 Sum_probs=132.0
Q ss_pred cHHHHHHHHHHHHcC-CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhccc
Q 022641 66 QEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~-~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (294)
++..+..|.-..-.. ....++|.|++|+|||+++++++..+-. ..+|+.+..+. +.+.+..-+.--.....+.
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~----~~p~r~~p~~~--t~~~L~Gg~Dl~~~l~~g~ 81 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA----GTPLRRLPPGI--ADDRLLGGLDLAATLRAGR 81 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC----CCCcccCCCCC--cHHHccCCchHHhHhhcCC
Confidence 445555544444444 4456999999999999999999988722 12443332221 2222211111111111122
Q ss_pred C-ccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-------------CcceEEEEecC---CcccchHhhcccc
Q 022641 145 G-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNY---ISRIIEPLASRCA 207 (294)
Q Consensus 145 ~-~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-------------~~~~ii~~~~~---~~~~~~~l~~r~~ 207 (294)
. ..++....+.++||||||++.+++..++.|++.+++.. ..+.+|.+-|. ...+..++++||.
T Consensus 82 ~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~ 161 (584)
T PRK13406 82 PVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLA 161 (584)
T ss_pred cCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheE
Confidence 1 45566667788999999999999999999999998632 23334443221 1347888999998
Q ss_pred -EEEecCCCHHHHH-------HHHHHHHHHhCCCCCHHHHHHHHhhc--cC--cHHHHHHHHHHHHHHh----CCCCChh
Q 022641 208 -KFRFKPLSEEVMS-------SRVLHICNEEGLNLDAEALSTLSSIS--QG--DLRRAITYLQGAARLF----GSSITSK 271 (294)
Q Consensus 208 -~i~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~l~~l~~~~--~G--~~r~~~~~l~~~~~~~----~~~it~~ 271 (294)
.+.+.+++..+.. .+......-.++.++++.++++++.+ .| .+|..+.++.-+...+ ...|+.+
T Consensus 162 l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~ 241 (584)
T PRK13406 162 FHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEE 241 (584)
T ss_pred EEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 7888887765432 12211111146789999999887753 12 5688777777655555 5679999
Q ss_pred hhhhhccccc
Q 022641 272 DLISVSGYPT 281 (294)
Q Consensus 272 ~v~~~~~~~~ 281 (294)
||..++..+-
T Consensus 242 dv~~Aa~lvL 251 (584)
T PRK13406 242 DLALAARLVL 251 (584)
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 240
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.25 E-value=3.1e-11 Score=101.19 Aligned_cols=137 Identities=16% Similarity=0.183 Sum_probs=74.2
Q ss_pred cCCchhhhhcCCCcchhhcc----cHHHHHHHHHHHHcC----CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcce
Q 022641 46 QSSQPWVEKYRPKQVKDVAH----QEEVVRVLTNTLETA----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (294)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~g----~~~~~~~l~~~l~~~----~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~ 117 (294)
.+.+|. .+...+|+++.. +..+......++... ...+++|+||+|||||+|+.++++++... +..+.
T Consensus 114 ~a~~p~--~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~---g~~v~ 188 (306)
T PRK08939 114 SIYMPK--DLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK---GVSST 188 (306)
T ss_pred HcCCCH--hHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCEE
Confidence 455553 445556665542 333444445555532 23579999999999999999999998422 22222
Q ss_pred eecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--HHHH-HHHHHHHhh-cCcceEEEEec
Q 022641 118 ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQN-ALRRTMETY-SKVTRFFFICN 193 (294)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--~~~~-~L~~~l~~~-~~~~~ii~~~~ 193 (294)
.+..+. .+. .+.... .............+.++|||||++.-+. -... .|..+++.+ .....+|+|||
T Consensus 189 ~~~~~~-----l~~-~lk~~~---~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 189 LLHFPE-----FIR-ELKNSI---SDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred EEEHHH-----HHH-HHHHHH---hcCcHHHHHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 222211 011 111100 0000000001123456999999987643 3343 344555655 46778999998
Q ss_pred CCc
Q 022641 194 YIS 196 (294)
Q Consensus 194 ~~~ 196 (294)
...
T Consensus 260 l~~ 262 (306)
T PRK08939 260 FDF 262 (306)
T ss_pred CCH
Confidence 764
No 241
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.2e-11 Score=105.94 Aligned_cols=120 Identities=29% Similarity=0.382 Sum_probs=76.4
Q ss_pred CcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec------CCCCcchhHHH
Q 022641 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN------ASDDRGINVVR 131 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 131 (294)
.+|.|+.||+..++.+.-+...+. |++++||||||||.+|+.+..-+ +.......++++ .........+.
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~lL--Ppls~~E~lE~s~I~s~~g~~~~~~~~~~ 251 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPGLL--PPLSIPEALEVSAIHSLAGDLHEGCPLKI 251 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcccC--CCCChHHHHHHHHHhhhcccccccCccce
Confidence 388999999999999886666554 89999999999999999987765 111111111111 00000000000
Q ss_pred --------HHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh
Q 022641 132 --------TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181 (294)
Q Consensus 132 --------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~ 181 (294)
.......-...+....++....+.++||||||+..+.....+.|.+-|++
T Consensus 252 ~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~ 309 (490)
T COG0606 252 HRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLEN 309 (490)
T ss_pred eCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCcccc
Confidence 00000001111233456677788999999999999999999999988875
No 242
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.24 E-value=2.4e-10 Score=96.32 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=65.3
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcC-----------cceEEEEecCC-------cccchHhhccccEEEec
Q 022641 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSK-----------VTRFFFICNYI-------SRIIEPLASRCAKFRFK 212 (294)
Q Consensus 151 ~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~-----------~~~ii~~~~~~-------~~~~~~l~~r~~~i~~~ 212 (294)
...+.++++-++|+...+.+.++.|+.++++... ...+|+++|.. .....+|.+||..+.++
T Consensus 232 l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vp 311 (361)
T smart00763 232 LNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVP 311 (361)
T ss_pred cccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCC
Confidence 3446789999999999999999999999985331 23356666654 24578999999988887
Q ss_pred CC-CHHHHHHHHHHHHHHh---CCCCCHHHHHHHH
Q 022641 213 PL-SEEVMSSRVLHICNEE---GLNLDAEALSTLS 243 (294)
Q Consensus 213 ~~-~~~~~~~~l~~~~~~~---~~~~~~~~l~~l~ 243 (294)
.+ +..+-.++.++.+... +..+.+.+++.++
T Consensus 312 Y~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa 346 (361)
T smart00763 312 YCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAA 346 (361)
T ss_pred CcCCHHHHHHHHHHHhccCcCcccccCchHHHHHH
Confidence 55 5567777777776543 3345555544443
No 243
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.21 E-value=1.7e-10 Score=97.55 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=72.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEe
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD 162 (294)
.+++|+||+|+|||||+.++++++... +..++.+...+. ...+........... ..........++||||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~---g~~V~y~t~~~l------~~~l~~~~~~~~~~~-~~~~~~l~~~DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR---GKSVIYRTADEL------IEILREIRFNNDKEL-EEVYDLLINCDLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEEHHHH------HHHHHHHHhccchhH-HHHHHHhccCCEEEEe
Confidence 679999999999999999999998533 234444433221 111111000000000 0000011234699999
Q ss_pred CCCCC--CHHHHHHHHHHHHhhcC-cceEEEEecCCcc-----cchHhhccc----cEEEecCCC
Q 022641 163 EADSM--TEDAQNALRRTMETYSK-VTRFFFICNYISR-----IIEPLASRC----AKFRFKPLS 215 (294)
Q Consensus 163 ei~~l--~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~~-----~~~~l~~r~----~~i~~~~~~ 215 (294)
|++.. ++...+.|+.+++.+.. ...+|++||.... +.+++.+|+ ..+.|...+
T Consensus 254 DlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 254 DLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcC
Confidence 99765 45667889999988764 4678999986532 234555554 356665544
No 244
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.19 E-value=1.2e-10 Score=105.54 Aligned_cols=219 Identities=19% Similarity=0.142 Sum_probs=132.1
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHcCCC------------CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcce
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~------------~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~ 117 (294)
...+.+...-...+.|++.+++.+.-.|..+.. -|+||+|.||||||.+.+.+.+.+ ..-+
T Consensus 275 ~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a-------Pr~v 347 (682)
T COG1241 275 DIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA-------PRGV 347 (682)
T ss_pred cHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhC-------CceE
Confidence 444555555556788999999988888876432 259999999999999999999876 1222
Q ss_pred eecC--CCCcchh--HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh-----------
Q 022641 118 ELNA--SDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY----------- 182 (294)
Q Consensus 118 ~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~----------- 182 (294)
..++ +...+.. ..++.. . ..+....+....+.+++++|||+|.++......|...|+..
T Consensus 348 ytsgkgss~~GLTAav~rd~~-----t-ge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~a 421 (682)
T COG1241 348 YTSGKGSSAAGLTAAVVRDKV-----T-GEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITA 421 (682)
T ss_pred EEccccccccCceeEEEEccC-----C-CeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceee
Confidence 2222 2211111 010000 0 01112334455677889999999999999999999999852
Q ss_pred --cCcceEEEEecCCcc-------------cchHhhccccEEEe--cCCCHHHHHH------------------------
Q 022641 183 --SKVTRFFFICNYISR-------------IIEPLASRCAKFRF--KPLSEEVMSS------------------------ 221 (294)
Q Consensus 183 --~~~~~ii~~~~~~~~-------------~~~~l~~r~~~i~~--~~~~~~~~~~------------------------ 221 (294)
+..+.++.++|+... ++++|++||..|.+ .-++.+.-..
T Consensus 422 tLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~ 501 (682)
T COG1241 422 TLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVD 501 (682)
T ss_pred ecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccc
Confidence 234456666665542 67889999984433 3333221111
Q ss_pred --------HHHHHH---HH-hCCCCCHHHHHHHHhhcc-----C-----------cHHHHHHHHHHHHHHh----CCCCC
Q 022641 222 --------RVLHIC---NE-EGLNLDAEALSTLSSISQ-----G-----------DLRRAITYLQGAARLF----GSSIT 269 (294)
Q Consensus 222 --------~l~~~~---~~-~~~~~~~~~l~~l~~~~~-----G-----------~~r~~~~~l~~~~~~~----~~~it 269 (294)
+|+++. ++ -...+++++.+.|.+..- + ..|++-.+++.+-..+ +..++
T Consensus 502 ~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~ 581 (682)
T COG1241 502 EVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVE 581 (682)
T ss_pred ccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCC
Confidence 122221 11 113578888888776531 1 1444444444444333 67799
Q ss_pred hhhhhhhccccc
Q 022641 270 SKDLISVSGYPT 281 (294)
Q Consensus 270 ~~~v~~~~~~~~ 281 (294)
.+|+..+.....
T Consensus 582 ~eD~~eAi~lv~ 593 (682)
T COG1241 582 EEDVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHHHH
Confidence 999988876544
No 245
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.6e-10 Score=93.51 Aligned_cols=151 Identities=22% Similarity=0.293 Sum_probs=98.6
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc----hhHHHHHHHHHHhhhcccCccCCCCCCCCcEE
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (294)
.|++|.||+|+|||.||+.||+-+ +.++.-+++....- .+.+...+..+....... ...++.+|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n------VekAQqGI 294 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN------VEKAQQGI 294 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh------CCCeEEecccchhhcccccccHHHHHHHHHHHccCC------HHHHhcCe
Confidence 579999999999999999999999 78888777765321 123333333333222111 11235679
Q ss_pred EEEeCCCCCC--------------HHHHHHHHHHHHhhc-------------Cc------ceEEEEec------------
Q 022641 159 IILDEADSMT--------------EDAQNALRRTMETYS-------------KV------TRFFFICN------------ 193 (294)
Q Consensus 159 liiDei~~l~--------------~~~~~~L~~~l~~~~-------------~~------~~ii~~~~------------ 193 (294)
++|||+|.+. ..+++.|+++++..- .. .-|++++.
T Consensus 295 VflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r 374 (564)
T KOG0745|consen 295 VFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR 374 (564)
T ss_pred EEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH
Confidence 9999999884 347889999997210 00 01222220
Q ss_pred -----------C-----------------------------------CcccchHhhcccc-EEEecCCCHHHHHHHHHH-
Q 022641 194 -----------Y-----------------------------------ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLH- 225 (294)
Q Consensus 194 -----------~-----------------------------------~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~- 225 (294)
. .+.+.|+|..||. ++.|.+++.+++..+|..
T Consensus 375 R~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEP 454 (564)
T KOG0745|consen 375 RLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEP 454 (564)
T ss_pred hhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcc
Confidence 0 0115688999998 689999999988877743
Q ss_pred ----------HHHHhCC--CCCHHHHHHHHhh
Q 022641 226 ----------ICNEEGL--NLDAEALSTLSSI 245 (294)
Q Consensus 226 ----------~~~~~~~--~~~~~~l~~l~~~ 245 (294)
++...++ .+++++++.|++.
T Consensus 455 knaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~ 486 (564)
T KOG0745|consen 455 KNALGKQYKKLFGMDNVELHFTEKALEAIAQL 486 (564)
T ss_pred hhhHHHHHHHHhccCCeeEEecHHHHHHHHHH
Confidence 2222233 4799999999876
No 246
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.19 E-value=1.2e-10 Score=102.36 Aligned_cols=224 Identities=17% Similarity=0.144 Sum_probs=130.0
Q ss_pred hhhhhcCCCcchhhcccHHHHHHHHHHHHcCCC------------CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcce
Q 022641 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (294)
Q Consensus 50 ~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~------------~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~ 117 (294)
...+++...-+..+.|++.++..+.-.+..|-. .|++|+|.||+|||.++++.+.-+ ..-+
T Consensus 334 nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs-------PR~v 406 (764)
T KOG0480|consen 334 NLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS-------PRSV 406 (764)
T ss_pred hHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC-------Ccce
Confidence 334444455566788999999888877765421 259999999999999999998755 2222
Q ss_pred eecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-------------hcC
Q 022641 118 ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET-------------YSK 184 (294)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~-------------~~~ 184 (294)
+.++............... ..........+..-.+.++++.|||+|+++...+..|++.|+. .+.
T Consensus 407 YtsGkaSSaAGLTaaVvkD--~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 407 YTSGKASSAAGLTAAVVKD--EESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred EecCcccccccceEEEEec--CCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecc
Confidence 2222111000000000000 0000001122333456778999999999999889999999984 223
Q ss_pred cceEEEEecCCc-------------ccchHhhcccc--EEEecCC-----------------------------CHHHHH
Q 022641 185 VTRFFFICNYIS-------------RIIEPLASRCA--KFRFKPL-----------------------------SEEVMS 220 (294)
Q Consensus 185 ~~~ii~~~~~~~-------------~~~~~l~~r~~--~i~~~~~-----------------------------~~~~~~ 220 (294)
..+|+.++|+.. .+..++++||. .|-+..+ +.++++
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vr 564 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVR 564 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHH
Confidence 444666666432 25678899987 3444444 445555
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhcc--------C--------cHHHHHHHHH---HHHHHh-CCCCChhhhhhhcccc
Q 022641 221 SRVLHICNEEGLNLDAEALSTLSSISQ--------G--------DLRRAITYLQ---GAARLF-GSSITSKDLISVSGYP 280 (294)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~l~~l~~~~~--------G--------~~r~~~~~l~---~~~~~~-~~~it~~~v~~~~~~~ 280 (294)
.++.... .....++.++-+.|.+... | ..|++-.++. ..|+.. ...+|.+++.++....
T Consensus 565 kYi~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 565 KYIRYAR-NFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred HHHHHHH-hcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 5543322 3334467777666665421 1 2344444443 333333 6779999999888765
Q ss_pred cCC
Q 022641 281 TGG 283 (294)
Q Consensus 281 ~~~ 283 (294)
..+
T Consensus 644 k~S 646 (764)
T KOG0480|consen 644 KKS 646 (764)
T ss_pred Hhh
Confidence 554
No 247
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.18 E-value=6.5e-10 Score=89.77 Aligned_cols=176 Identities=22% Similarity=0.267 Sum_probs=114.6
Q ss_pred hhcccHHHHHHHHHHH----HcCCCCc---EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee----cCCCCcchhHH
Q 022641 62 DVAHQEEVVRVLTNTL----ETANCPH---MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL----NASDDRGINVV 130 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l----~~~~~~~---ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 130 (294)
.+.||.-+++.+...+ .++.++. +-|+|++||||+.+++.+++.++........+..+ +.+.....+..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 5667766666555554 3443322 77899999999999999999986544333333333 23333333333
Q ss_pred HHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-------CcceEEEEecCCcc------
Q 022641 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------KVTRFFFICNYISR------ 197 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-------~~~~ii~~~~~~~~------ 197 (294)
+..+......... ..++.+.|+||+|.|++...+.|...++.++ .+..+|+.+|....
T Consensus 163 k~eL~~~v~~~v~---------~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~a 233 (344)
T KOG2170|consen 163 KEELKNRVRGTVQ---------ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIA 233 (344)
T ss_pred HHHHHHHHHHHHH---------hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHH
Confidence 3333332222211 2345699999999999999999999988433 45668888865331
Q ss_pred -----------------cchHhh-------------cc------c-cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 022641 198 -----------------IIEPLA-------------SR------C-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALS 240 (294)
Q Consensus 198 -----------------~~~~l~-------------~r------~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 240 (294)
+-+.+. ++ . ..|.|.|++...++..++-.+.++|...+++.++
T Consensus 234 L~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~~d~~~~e 313 (344)
T KOG2170|consen 234 LENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLAPDQDFVE 313 (344)
T ss_pred HHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcccccchHHHH
Confidence 001110 11 1 2678889999999999999888999888888888
Q ss_pred HHHhhc
Q 022641 241 TLSSIS 246 (294)
Q Consensus 241 ~l~~~~ 246 (294)
.+++..
T Consensus 314 rva~~l 319 (344)
T KOG2170|consen 314 RVANSL 319 (344)
T ss_pred HHHHhh
Confidence 888763
No 248
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.17 E-value=9.5e-09 Score=82.59 Aligned_cols=167 Identities=20% Similarity=0.209 Sum_probs=106.3
Q ss_pred HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCC
Q 022641 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (294)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
..+..++.... .-.+.||+|||||.+++.+++.+ +..++.++++...+...+...+........
T Consensus 23 ~~l~~al~~~~--~~~~~GpagtGKtetik~La~~l------G~~~~vfnc~~~~~~~~l~ril~G~~~~Ga-------- 86 (231)
T PF12774_consen 23 LTLTQALSLNL--GGALSGPAGTGKTETIKDLARAL------GRFVVVFNCSEQMDYQSLSRILKGLAQSGA-------- 86 (231)
T ss_dssp HHHHHHHCTTT--EEEEESSTTSSHHHHHHHHHHCT------T--EEEEETTSSS-HHHHHHHHHHHHHHT---------
T ss_pred HHHHHHhccCC--CCCCcCCCCCCchhHHHHHHHHh------CCeEEEecccccccHHHHHHHHHHHhhcCc--------
Confidence 34444454332 46789999999999999999999 999999999999998888888877776542
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh--------------------hcCcceEEEEecCC----cccchHhhccc
Q 022641 151 YPCPPYKIIILDEADSMTEDAQNALRRTMET--------------------YSKVTRFFFICNYI----SRIIEPLASRC 206 (294)
Q Consensus 151 ~~~~~~~lliiDei~~l~~~~~~~L~~~l~~--------------------~~~~~~ii~~~~~~----~~~~~~l~~r~ 206 (294)
.+++||+++++.+....+.+.+.. ......+++|.|.. ..+++.+..-|
T Consensus 87 -------W~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF 159 (231)
T PF12774_consen 87 -------WLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF 159 (231)
T ss_dssp -------EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE
T ss_pred -------hhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh
Confidence 899999999998877666555532 11234566676633 46888899999
Q ss_pred cEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-------hh------ccCcHHHHHHHHHHHHHH
Q 022641 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLS-------SI------SQGDLRRAITYLQGAARL 263 (294)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~-------~~------~~G~~r~~~~~l~~~~~~ 263 (294)
..+.+..|+...+.+++ +...|..-.......+. ++ .+-.+|.+..++..+...
T Consensus 160 Rpvam~~PD~~~I~ei~---L~s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~ 226 (231)
T PF12774_consen 160 RPVAMMVPDLSLIAEIL---LLSQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSL 226 (231)
T ss_dssp EEEE--S--HHHHHHHH---HHCCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHH
T ss_pred heeEEeCCCHHHHHHHH---HHHcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHH
Confidence 99999999977777665 34445432222222222 11 234688888888877654
No 249
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.16 E-value=2.1e-10 Score=85.38 Aligned_cols=125 Identities=19% Similarity=0.223 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHHHHc--CCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhc
Q 022641 65 HQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142 (294)
Q Consensus 65 g~~~~~~~l~~~l~~--~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (294)
|....++.+.+.+.. .....++|+|++||||+++|+.+...-.. ....++.+++.... .+.+...
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~---~~~~~~~~~~~~~~-----~~~l~~a----- 68 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR---ANGPFIVIDCASLP-----AELLEQA----- 68 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT---CCS-CCCCCHHCTC-----HHHHHHC-----
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc---cCCCeEEechhhCc-----HHHHHHc-----
Confidence 444444444444433 22346999999999999999999876421 22344444433322 1122221
Q ss_pred ccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh-cCcceEEEEecCCc-------ccchHhhcccc--EEEec
Q 022641 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYIS-------RIIEPLASRCA--KFRFK 212 (294)
Q Consensus 143 ~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~-~~~~~ii~~~~~~~-------~~~~~l~~r~~--~i~~~ 212 (294)
+.+.|+|+|++.++...+..|+..++.. ..+.++|+++.... .+.+.|..++. .|.++
T Consensus 69 ------------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lP 136 (138)
T PF14532_consen 69 ------------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLP 136 (138)
T ss_dssp ------------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE-
T ss_pred ------------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCC
Confidence 2349999999999999999999999864 46778888886432 35567777765 67776
Q ss_pred CC
Q 022641 213 PL 214 (294)
Q Consensus 213 ~~ 214 (294)
|+
T Consensus 137 pL 138 (138)
T PF14532_consen 137 PL 138 (138)
T ss_dssp --
T ss_pred CC
Confidence 64
No 250
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.3e-10 Score=91.23 Aligned_cols=128 Identities=20% Similarity=0.271 Sum_probs=82.3
Q ss_pred CcEEEEEeCCCCCCH------------HHHHHHHHHHHhhc----------CcceEEEEe----cCCcccchHhhcccc-
Q 022641 155 PYKIIILDEADSMTE------------DAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA- 207 (294)
Q Consensus 155 ~~~lliiDei~~l~~------------~~~~~L~~~l~~~~----------~~~~ii~~~----~~~~~~~~~l~~r~~- 207 (294)
+.+++||||||.+.. .++.-|+.+++... .+..+|.++ ..|+.+.|+|..||.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 367999999998732 35666888887422 233233332 456778999999999
Q ss_pred EEEecCCCHHHHHHHHHH-----------HHHHhCCC--CCHHHHHHHHhhc---c---Cc--HHHHHH----HHHHHHH
Q 022641 208 KFRFKPLSEEVMSSRVLH-----------ICNEEGLN--LDAEALSTLSSIS---Q---GD--LRRAIT----YLQGAAR 262 (294)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~~--~~~~~l~~l~~~~---~---G~--~r~~~~----~l~~~~~ 262 (294)
.+++.+++.++...+|.. .++.+++. ++++++..|++.+ + -| .|.+-. +|+..+.
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSF 409 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISF 409 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCc
Confidence 799999999998887743 23345554 7899999998863 1 12 233333 3333333
Q ss_pred Hh----CC--CCChhhhhhhcccccC
Q 022641 263 LF----GS--SITSKDLISVSGYPTG 282 (294)
Q Consensus 263 ~~----~~--~it~~~v~~~~~~~~~ 282 (294)
.+ +. .|+.+.|.+-++....
T Consensus 410 eA~d~~g~~v~Id~~yV~~~l~~l~~ 435 (444)
T COG1220 410 EAPDMSGQKVTIDAEYVEEKLGDLVA 435 (444)
T ss_pred cCCcCCCCeEEEcHHHHHHHHHHHhc
Confidence 33 11 3777777777765433
No 251
>PRK06921 hypothetical protein; Provisional
Probab=99.15 E-value=5.3e-10 Score=92.10 Aligned_cols=122 Identities=18% Similarity=0.184 Sum_probs=69.7
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEE
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lli 160 (294)
...+++|+||+|+|||||+.++++++.... +..++.+...+. ...+...+....... ....+.++||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~--g~~v~y~~~~~l--~~~l~~~~~~~~~~~---------~~~~~~dlLi 182 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK--GVPVLYFPFVEG--FGDLKDDFDLLEAKL---------NRMKKVEVLF 182 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc--CceEEEEEHHHH--HHHHHHHHHHHHHHH---------HHhcCCCEEE
Confidence 345799999999999999999999984321 233333332211 111111111110000 0112346999
Q ss_pred EeCCCC-------CCHHHHHHHHHHHHhhcC-cceEEEEecCCcc----cchHhhc----ccc--EEEecCCC
Q 022641 161 LDEADS-------MTEDAQNALRRTMETYSK-VTRFFFICNYISR----IIEPLAS----RCA--KFRFKPLS 215 (294)
Q Consensus 161 iDei~~-------l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~~----~~~~l~~----r~~--~i~~~~~~ 215 (294)
|||++. .+.-..+.|+.+++.+.. ...+|++||.... +.+.+.+ |+. .+.+...|
T Consensus 183 IDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~~~~~l~sRi~~r~~~~~i~~~g~s 255 (266)
T PRK06921 183 IDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSRIVEMCKDYLVIIKGDS 255 (266)
T ss_pred EeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhhhhhHHHHHHHHhccCeEEEecCcc
Confidence 999944 344456778999987764 4668888886532 1234444 343 56665554
No 252
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.14 E-value=6e-10 Score=98.68 Aligned_cols=187 Identities=24% Similarity=0.248 Sum_probs=126.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccC---ccCCCCCCCCcEEEE
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG---QRRGGYPCPPYKIII 160 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~lli 160 (294)
.+++.|.+||||-.+++++...- . ...+++.+|+..... ..+...+-.+......+. ...+.......+-+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s---~-~~gpfvAvNCaAip~-~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNS---E-AAGPFVAVNCAAIPE-ALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcc---c-ccCCeEEEEeccchH-HhhhHHHhccCccccccchhccccccceecCCCccH
Confidence 49999999999999999997653 3 567888898887533 222222222221111111 123444556778999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhhc----------CcceEEEEecCCc-------ccchHhhcccc--EEEecCCCH-HHHH
Q 022641 161 LDEADSMTEDAQNALRRTMETYS----------KVTRFFFICNYIS-------RIIEPLASRCA--KFRFKPLSE-EVMS 220 (294)
Q Consensus 161 iDei~~l~~~~~~~L~~~l~~~~----------~~~~ii~~~~~~~-------~~~~~l~~r~~--~i~~~~~~~-~~~~ 220 (294)
+|||+.++...+..|+.++.+.. -.+.+|.+|+..- .....+..|.. .|.++|+.. .+..
T Consensus 413 ldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~ 492 (606)
T COG3284 413 LDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRI 492 (606)
T ss_pred HHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccH
Confidence 99999999999999999998532 2345666665432 23345566666 677777753 3444
Q ss_pred HHHHHHHHHh---CCCCCHHHHHHHHhh-ccCcHHHHHHHHHHHHHHh-CCCCChhhhhh
Q 022641 221 SRVLHICNEE---GLNLDAEALSTLSSI-SQGDLRRAITYLQGAARLF-GSSITSKDLIS 275 (294)
Q Consensus 221 ~~l~~~~~~~---~~~~~~~~l~~l~~~-~~G~~r~~~~~l~~~~~~~-~~~it~~~v~~ 275 (294)
..|.++..++ .+.+++++++.|..+ ++||+|++.++++.++... +..|...++-.
T Consensus 493 ~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~dlp~ 552 (606)
T COG3284 493 PLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSDLPP 552 (606)
T ss_pred HHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEcccCCH
Confidence 5555555544 367899999998776 8999999999999998877 34455555433
No 253
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=99.13 E-value=3.8e-09 Score=90.44 Aligned_cols=106 Identities=15% Similarity=0.229 Sum_probs=62.0
Q ss_pred cHHHHHHHHHH-HHcCCCCcEEEECCCCCCHHHHHHHHHHH-hcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcc
Q 022641 66 QEEVVRVLTNT-LETANCPHMLFYGPPGTGKTTTALAIAHQ-LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143 (294)
Q Consensus 66 ~~~~~~~l~~~-l~~~~~~~ill~Gp~G~GKT~la~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (294)
....+..|.+. -......|+++.||+||||||++.+++.. .+ ......+.. .++..+.....
T Consensus 192 ~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~------------~sG~f~T~a---~Lf~~L~~~~l- 255 (449)
T TIGR02688 192 ARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVIL------------ISGGTITVA---KLFYNISTRQI- 255 (449)
T ss_pred hHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHH------------HcCCcCcHH---HHHHHHHHHHH-
Confidence 34444444443 12234458999999999999999999887 31 111111222 22222222111
Q ss_pred cCccCCCCCCCCcEEEEEeCCCCCC----HHHHHHHHHHHHhhc---------CcceEEEEecC
Q 022641 144 SGQRRGGYPCPPYKIIILDEADSMT----EDAQNALRRTMETYS---------KVTRFFFICNY 194 (294)
Q Consensus 144 ~~~~~~~~~~~~~~lliiDei~~l~----~~~~~~L~~~l~~~~---------~~~~ii~~~~~ 194 (294)
....+.++|+|||+.+++ .+..+.+...|+... ...++++++|-
T Consensus 256 -------g~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi 312 (449)
T TIGR02688 256 -------GLVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNV 312 (449)
T ss_pred -------hhhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEccc
Confidence 123456799999999975 235567777776432 35567777764
No 254
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.11 E-value=1.4e-09 Score=96.69 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=99.9
Q ss_pred hcCCCcchhhcccHHHHHHHHHHHHcCCC------------CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecC
Q 022641 54 KYRPKQVKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (294)
Q Consensus 54 ~~~~~~~~~~~g~~~~~~~l~~~l~~~~~------------~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~ 121 (294)
.+...-...+.|+++.++.++-.|+.|.. -||||+|.||||||.+++.+.+-+. .. +..++
T Consensus 422 lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p------Rg-~yTSG 494 (804)
T KOG0478|consen 422 LLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP------RG-VYTSG 494 (804)
T ss_pred HHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC------cc-eeecC
Confidence 33333344777999999888777765422 2599999999999999999998762 11 11111
Q ss_pred --CCCcchhHHHHHHHHHHhhhcc---cCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-------------hc
Q 022641 122 --SDDRGINVVRTKIKTFAAVAVG---SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET-------------YS 183 (294)
Q Consensus 122 --~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~-------------~~ 183 (294)
+...+. ......... .-...+....+.+++++|||+|+|+......|.++|+. .+
T Consensus 495 kGsSavGL-------TayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLN 567 (804)
T KOG0478|consen 495 KGSSAVGL-------TAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLN 567 (804)
T ss_pred Cccchhcc-------eeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeecc
Confidence 111110 000000000 00112333456778999999999999999999999984 34
Q ss_pred CcceEEEEecCCc-------------ccchHhhcccc--EEEecCCCHHHHHHHHHHHH
Q 022641 184 KVTRFFFICNYIS-------------RIIEPLASRCA--KFRFKPLSEEVMSSRVLHIC 227 (294)
Q Consensus 184 ~~~~ii~~~~~~~-------------~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~ 227 (294)
...+|+.++|+.. .+++.|++||. .+-+.++++..=+.+..++.
T Consensus 568 AR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 568 ARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred ccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 5666777776321 27899999999 45567777654444444444
No 255
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.10 E-value=2.2e-09 Score=79.93 Aligned_cols=99 Identities=28% Similarity=0.322 Sum_probs=56.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHH----------------HHHHHHHHhhhcccCc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV----------------RTKIKTFAAVAVGSGQ 146 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 146 (294)
.+++|+||||||||++++.++..+.... ..++.++++........ .............
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK--- 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh---
Confidence 4699999999999999999999984332 13455544432211100 0111111111110
Q ss_pred cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHH--------HHHhhcCcceEEEEecC
Q 022641 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRR--------TMETYSKVTRFFFICNY 194 (294)
Q Consensus 147 ~~~~~~~~~~~lliiDei~~l~~~~~~~L~~--------~l~~~~~~~~ii~~~~~ 194 (294)
....+|+|||++.+.......... ..........+|+++|.
T Consensus 77 -------~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 -------LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred -------cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 013599999999997654443322 22334456778888885
No 256
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.10 E-value=6.1e-10 Score=92.00 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=85.6
Q ss_pred HHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCc-cCCCCC
Q 022641 74 TNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ-RRGGYP 152 (294)
Q Consensus 74 ~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 152 (294)
..++..+ .+++|+||+|||||++++.+.+.+... ......++.+.......+ +........... ..-+..
T Consensus 27 ~~l~~~~--~pvLl~G~~GtGKT~li~~~l~~l~~~---~~~~~~~~~s~~Tts~~~----q~~ie~~l~k~~~~~~gP~ 97 (272)
T PF12775_consen 27 DLLLSNG--RPVLLVGPSGTGKTSLIQNFLSSLDSD---KYLVITINFSAQTTSNQL----QKIIESKLEKRRGRVYGPP 97 (272)
T ss_dssp HHHHHCT--EEEEEESSTTSSHHHHHHHHHHCSTTC---CEEEEEEES-TTHHHHHH----HHCCCTTECECTTEEEEEE
T ss_pred HHHHHcC--CcEEEECCCCCchhHHHHhhhccCCcc---ccceeEeeccCCCCHHHH----HHHHhhcEEcCCCCCCCCC
Confidence 3344443 379999999999999999987765211 112333444443333222 222222111110 011123
Q ss_pred CCCcEEEEEeCCCCCCH------HHHHHHHHHHHhhc------------CcceEEEEecCC---cccchHhhccccEEEe
Q 022641 153 CPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI---SRIIEPLASRCAKFRF 211 (294)
Q Consensus 153 ~~~~~lliiDei~~l~~------~~~~~L~~~l~~~~------------~~~~ii~~~~~~---~~~~~~l~~r~~~i~~ 211 (294)
.+++.+++|||++.-.+ ...+.|.++++... .++.++.+++.. ..+.+++.+.|.++.+
T Consensus 98 ~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~ 177 (272)
T PF12775_consen 98 GGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNI 177 (272)
T ss_dssp SSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE-
T ss_pred CCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEe
Confidence 45777999999986532 24678888887422 234466666653 2478899999999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 022641 212 KPLSEEVMSSRVLHICNE 229 (294)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~ 229 (294)
++|+.+.+..+...++..
T Consensus 178 ~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999999998888764
No 257
>PF05729 NACHT: NACHT domain
Probab=99.10 E-value=1.1e-09 Score=84.18 Aligned_cols=145 Identities=15% Similarity=0.148 Sum_probs=82.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCC---cceeecCCCCcch---hHHHHHHHHHHhhhcccCcc--CCCCCCCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKS---RVLELNASDDRGI---NVVRTKIKTFAAVAVGSGQR--RGGYPCPP 155 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (294)
-++|+|++|+|||++++.++..+........ .++.+........ ..+...+............. ........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3799999999999999999998854433221 1222222221111 12222222211111000000 00011244
Q ss_pred cEEEEEeCCCCCCHHH--------HHHHHHHHHh-hcCcceEEEEecCCcc-cchHhhccccEEEecCCCHHHHHHHHHH
Q 022641 156 YKIIILDEADSMTEDA--------QNALRRTMET-YSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (294)
Q Consensus 156 ~~lliiDei~~l~~~~--------~~~L~~~l~~-~~~~~~ii~~~~~~~~-~~~~l~~r~~~i~~~~~~~~~~~~~l~~ 225 (294)
+-+++||.+|.+.... ...|..++.. ......++++++.... ...........+.+.|++.+++..++++
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRK 161 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHH
Confidence 5699999999986532 2345555554 4566778888865432 1222233335899999999999999988
Q ss_pred HHH
Q 022641 226 ICN 228 (294)
Q Consensus 226 ~~~ 228 (294)
+++
T Consensus 162 ~f~ 164 (166)
T PF05729_consen 162 YFS 164 (166)
T ss_pred Hhh
Confidence 774
No 258
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.10 E-value=7e-09 Score=87.82 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=109.8
Q ss_pred CCcEEEEEeCCCCCC-HHHHHHHHHHHHhhcCcceEEEEecCCcc---cchHhh--ccccEEEecCCCHHHHHHHHHHHH
Q 022641 154 PPYKIIILDEADSMT-EDAQNALRRTMETYSKVTRFFFICNYISR---IIEPLA--SRCAKFRFKPLSEEVMSSRVLHIC 227 (294)
Q Consensus 154 ~~~~lliiDei~~l~-~~~~~~L~~~l~~~~~~~~ii~~~~~~~~---~~~~l~--~r~~~i~~~~~~~~~~~~~l~~~~ 227 (294)
+.+.+++|++++.+. ....+.|..+++..+....+|+.++.... +...+. +++..+.+.+++..++..++...+
T Consensus 45 ~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 124 (302)
T TIGR01128 45 SERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARL 124 (302)
T ss_pred cCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHH
Confidence 345799999999986 45678899999998888777777764322 112233 488999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh-CCCCChhhhhhhcccccCCCC
Q 022641 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 228 ~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~-~~~it~~~v~~~~~~~~~~~~ 285 (294)
++.|+.+++++++.+++.++||++.+.+.++..+.+. ++.||.++|..++....+...
T Consensus 125 ~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~i 183 (302)
T TIGR01128 125 KKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSARFNV 183 (302)
T ss_pred HHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCH
Confidence 9999999999999999999999999999999999886 457999999999987666544
No 259
>PRK05629 hypothetical protein; Validated
Probab=99.09 E-value=7.6e-09 Score=88.06 Aligned_cols=188 Identities=13% Similarity=0.071 Sum_probs=134.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEe
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD 162 (294)
+.++|+|+----.-.....+.+.+.........+..+++.+.. ...+ +. .... ...+.+.+|+++
T Consensus 7 ~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~~~l---~~-~~t~----------slF~~~rlV~v~ 71 (318)
T PRK05629 7 PVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVS-QGEL---LD-ALSP----------SLFGEDRVIVLT 71 (318)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCC-HHHH---HH-hhCc----------CccCCceEEEEe
Confidence 4588998655333334444555554444445566777655432 2222 21 1111 123456799999
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCc---ccchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 022641 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239 (294)
Q Consensus 163 ei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~---~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 239 (294)
+.+.......+.+...+..++....+|+++.... .+.+.+...+..+.+.++...++..++...++..|..++++++
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~ 151 (318)
T PRK05629 72 NMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVV 151 (318)
T ss_pred ChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9877666567778888888777777777664321 1233566667789999999999999999999999999999999
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhcccccCCCC
Q 022641 240 STLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 240 ~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~ 285 (294)
+.+++.+++|+..+.+.++.++.+.++.||.++|..++....+.++
T Consensus 152 ~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~i 197 (318)
T PRK05629 152 HALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSG 197 (318)
T ss_pred HHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchH
Confidence 9999999999999999999988777778999999999887655443
No 260
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.08 E-value=7.4e-09 Score=88.59 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=131.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEe
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD 162 (294)
+.++|+|+-.--+...+..+.+.+..+......+..+++.+.. .+...+......+ ..+.+.+|+++
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~---~~~~~~~~~~t~p----------ff~~~rlVvv~ 68 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDAD---QAIQALNEAMTPP----------FGSGGRLVWLK 68 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccch---HHHHHHHHhcCCC----------CCCCceEEEEe
Confidence 4589999988777777788877664433334445555544321 1223333322221 22346799999
Q ss_pred CCCCC---CHHHHHHHHHHHHhhcCcceEEEEec-CC---cccchHhhccccEEEecCC---CHHHHHHHHHHHHHHhCC
Q 022641 163 EADSM---TEDAQNALRRTMETYSKVTRFFFICN-YI---SRIIEPLASRCAKFRFKPL---SEEVMSSRVLHICNEEGL 232 (294)
Q Consensus 163 ei~~l---~~~~~~~L~~~l~~~~~~~~ii~~~~-~~---~~~~~~l~~r~~~i~~~~~---~~~~~~~~l~~~~~~~~~ 232 (294)
+.+.+ +....+.|..+++.++....+|+++. .. ......+...+....|.++ +.+++..++...+++.|+
T Consensus 69 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~ 148 (326)
T PRK07452 69 NSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGV 148 (326)
T ss_pred CchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCC
Confidence 98654 56677889999998888777777643 22 1233445555666666554 457799999999999999
Q ss_pred CCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCChhhhhhhcccc
Q 022641 233 NLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGYP 280 (294)
Q Consensus 233 ~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~~~ 280 (294)
.+++++++.|++.+++|++.+.+.++..+.+. +..||.++|..++...
T Consensus 149 ~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~ 199 (326)
T PRK07452 149 KLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT 199 (326)
T ss_pred CCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC
Confidence 99999999999999999999999999999884 4579999999998864
No 261
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.02 E-value=2.2e-09 Score=87.70 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=80.2
Q ss_pred cceEEEEe--cCCcccchHhhccccEEEecCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHhhccCcHHHHHHH
Q 022641 185 VTRFFFIC--NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE------GLNLDAEALSTLSSISQGDLRRAITY 256 (294)
Q Consensus 185 ~~~ii~~~--~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~l~~l~~~~~G~~r~~~~~ 256 (294)
...+|.+| |+.+.+.+++++||+++.|.|++.+++..++++.+... .+.+++++++.|++.++||.|.++|.
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~ 87 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNL 87 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHH
Confidence 34455555 67788999999999999999999999999999999752 35799999999999999999999999
Q ss_pred HHHHHHHh--CC--CCChhhhhhhcccc
Q 022641 257 LQGAARLF--GS--SITSKDLISVSGYP 280 (294)
Q Consensus 257 l~~~~~~~--~~--~it~~~v~~~~~~~ 280 (294)
|+.+.... .. .||.+.+++++...
T Consensus 88 LE~a~~~~~~~~~~~it~~~~~~~~~~~ 115 (300)
T PRK14700 88 LERMFLISTRGDEIYLNKELFDQAVGET 115 (300)
T ss_pred HHHHHhhccccCCCccCHHHHHHHHhHH
Confidence 99977533 22 29999999888653
No 262
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.01 E-value=3.8e-08 Score=95.68 Aligned_cols=189 Identities=15% Similarity=0.135 Sum_probs=117.6
Q ss_pred CCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHH
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (294)
.|..-..++-++.....+... ...+-++|+||+|.||||++..+.... . ....+.+...+......+...+.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----~-~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----N-NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----C-CeEEEecCcccCCHHHHHHHHHH
Confidence 355566778888777766532 233569999999999999999988654 1 23334444444333333333333
Q ss_pred HHHhhhcccCc-------cCC--------------CCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHHhhcCcceEEEEec
Q 022641 136 TFAAVAVGSGQ-------RRG--------------GYPCPPYKIIILDEADSMTEDA-QNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 136 ~~~~~~~~~~~-------~~~--------------~~~~~~~~lliiDei~~l~~~~-~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
.+......... ... ......+-+|||||+|.++... .+.|..++...+....+|++++
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 33211111000 000 0012456799999999997444 4567777777778888888886
Q ss_pred CCcccc-hHhhc--cccEEEec--CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHH
Q 022641 194 YISRII-EPLAS--RCAKFRFK--PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255 (294)
Q Consensus 194 ~~~~~~-~~l~~--r~~~i~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~ 255 (294)
....+. ..+.- .+..+... +++.+|...++...+ +..++++.+..+.+.|+|+|-.+.-
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~~l~l 224 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWATALQL 224 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHHHHHH
Confidence 533331 22222 22334443 889999999886433 6778999999999999999976543
No 263
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=8e-09 Score=93.16 Aligned_cols=167 Identities=22% Similarity=0.257 Sum_probs=101.7
Q ss_pred cccHHHHHHHHHHHHcC---------CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcch--hHHHH
Q 022641 64 AHQEEVVRVLTNTLETA---------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI--NVVRT 132 (294)
Q Consensus 64 ~g~~~~~~~l~~~l~~~---------~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 132 (294)
.+.+..+..+...+.-. ..+.++|+|+||||||++++++|+++ +..++++++...... .....
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l------g~h~~evdc~el~~~s~~~~et 477 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL------GLHLLEVDCYELVAESASHTET 477 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh------CCceEeccHHHHhhcccchhHH
Confidence 34555555555555322 22349999999999999999999999 788888776443211 11111
Q ss_pred HHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCC--------CHHHHHHHHHHHH--hh---cCcceEEEEecCCcccc
Q 022641 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM--------TEDAQNALRRTME--TY---SKVTRFFFICNYISRII 199 (294)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l--------~~~~~~~L~~~l~--~~---~~~~~ii~~~~~~~~~~ 199 (294)
.+........ ...+.+|++-++|-+ +...+..+...+. .+ ..+..++.+++....++
T Consensus 478 kl~~~f~~a~----------~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp 547 (953)
T KOG0736|consen 478 KLQAIFSRAR----------RCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLP 547 (953)
T ss_pred HHHHHHHHHh----------hcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCC
Confidence 2222111110 112336666666554 2233333333333 11 23445667777888899
Q ss_pred hHhhcccc-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHhhccC
Q 022641 200 EPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQG 248 (294)
Q Consensus 200 ~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~l~~~~~G 248 (294)
+.+++.+. .|.++.++++++.++++.++.... ++.+. ++.++.++.|
T Consensus 548 ~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 548 ADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSG 596 (953)
T ss_pred HHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCC
Confidence 99998876 899999999999999999986543 44333 4556666543
No 264
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.00 E-value=8.2e-08 Score=82.77 Aligned_cols=191 Identities=16% Similarity=0.107 Sum_probs=132.5
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEE
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lli 160 (294)
..+.++|+|+-.......+..+.+.+.........+..+++.+.. ..+...+..+...+ ..+.+.+|+
T Consensus 19 ~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~--~~~~~~~~~~~t~s----------lF~~~rlVi 86 (343)
T PRK06585 19 KIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLD--ADPARLEDEANAIS----------LFGGRRLIW 86 (343)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhh--cCHHHHHHHHhCCC----------CCCCceEEE
Confidence 446699999999888888888887764332222334444332211 01223333332222 234457999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCc---ccchHhh--ccccEEEecCCCHHHHHHHHHHHHHHhCCCCC
Q 022641 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RIIEPLA--SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD 235 (294)
Q Consensus 161 iDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~---~~~~~l~--~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (294)
+.+.+ ....+.|..+++..+....+|+.+.... .+...+. .....+.+.+++..++..++...++..|+.++
T Consensus 87 v~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~ 163 (343)
T PRK06585 87 VRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEAGLRIT 163 (343)
T ss_pred EECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCCCCC
Confidence 99654 3345567778877666676766553321 1222221 23346888899999999999999999999999
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHh--CCCCChhhhhhhcccccCCCCC
Q 022641 236 AEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKDLISVSGYPTGGSGG 286 (294)
Q Consensus 236 ~~~l~~l~~~~~G~~r~~~~~l~~~~~~~--~~~it~~~v~~~~~~~~~~~~~ 286 (294)
+++++.+++.++||++.+.+.++..+.+. +..||.++|..+++...+.+..
T Consensus 164 ~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if 216 (343)
T PRK06585 164 PDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLD 216 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHH
Confidence 99999999999999999999999999986 3579999999999987776553
No 265
>PRK07914 hypothetical protein; Reviewed
Probab=98.98 E-value=5.6e-08 Score=82.81 Aligned_cols=187 Identities=11% Similarity=0.057 Sum_probs=135.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcC-CCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEE
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llii 161 (294)
+..+|+|+----.......+.+.+.. ++.....+..+++.+... . . +...... ...+.+.+|++
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~-~---~-i~~~~t~----------plF~~rRlV~v 70 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVST-Y---E-LAELLSP----------SLFAEERVVVL 70 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCCH-H---H-HHHhcCC----------CCCCCceEEEE
Confidence 45888988766666666666665543 244455666666654422 1 1 2222211 12355679999
Q ss_pred eCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCc---ccchHhhcc-ccEEEecCC-CHHHHHHHHHHHHHHhCCCCCH
Q 022641 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RIIEPLASR-CAKFRFKPL-SEEVMSSRVLHICNEEGLNLDA 236 (294)
Q Consensus 162 Dei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~---~~~~~l~~r-~~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 236 (294)
++...+.....+.|..+++..+....+|++.+... .+...+... +..+.+.++ +..++..++...++..|+.+++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~ 150 (320)
T PRK07914 71 EAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDD 150 (320)
T ss_pred eChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 99877766667788889988777777777654322 122345544 347899988 9999999999999999999999
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhcccccCCC
Q 022641 237 EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGGS 284 (294)
Q Consensus 237 ~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~ 284 (294)
++++.|++.++||+..+.+.++.++.+.++.||.++|..++......+
T Consensus 151 ~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~ 198 (320)
T PRK07914 151 DTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVK 198 (320)
T ss_pred HHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeech
Confidence 999999999999999999999988766677899999999998765543
No 266
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=98.96 E-value=1.5e-07 Score=81.16 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=130.2
Q ss_pred HHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCC
Q 022641 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (294)
Q Consensus 72 ~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (294)
.+...+..+-.+.++|+|+-=.=+...+..+...+..+......+..+++.+. ... ..+..+...+
T Consensus 7 ~~~~~~~~~~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~~---~l~~~~~t~~---------- 72 (340)
T PRK05574 7 QLEKQLKKGLAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSET-DWD---DVLEACQSLP---------- 72 (340)
T ss_pred HHHHHHhCCCCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCC-CHH---HHHHHhhccC----------
Confidence 34455555544568999976433334444554443222333344555555432 222 2222222221
Q ss_pred CCCCcEEEEEeCCCCCCHHH----HHHHHHHHHhhcC--cceEEEEecCCc---cc---chHhhccccEEEecCCCHHHH
Q 022641 152 PCPPYKIIILDEADSMTEDA----QNALRRTMETYSK--VTRFFFICNYIS---RI---IEPLASRCAKFRFKPLSEEVM 219 (294)
Q Consensus 152 ~~~~~~lliiDei~~l~~~~----~~~L~~~l~~~~~--~~~ii~~~~~~~---~~---~~~l~~r~~~i~~~~~~~~~~ 219 (294)
..+.+.+++|++++.+.... ...|...+ .... ...+++..+... .+ .+.+..++..+.+.+++..++
T Consensus 73 lF~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~ 151 (340)
T PRK05574 73 LFSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAEL 151 (340)
T ss_pred ccccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHH
Confidence 22345799999999986542 23333333 2232 233444433221 22 456667888999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh-CCCCChhhhhhhcccccCCCC
Q 022641 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 220 ~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~-~~~it~~~v~~~~~~~~~~~~ 285 (294)
..++...++..|+.+++++++.+++.++||+..+.+.++..+.+. +..||.++|..++....+.+.
T Consensus 152 ~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~ 218 (340)
T PRK05574 152 PQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDV 218 (340)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCH
Confidence 999999999999999999999999999999999999999999887 344999999999888666544
No 267
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.5e-09 Score=96.71 Aligned_cols=154 Identities=23% Similarity=0.319 Sum_probs=100.7
Q ss_pred hhhcccHHHHHHHHHHHHcCCC------Cc--EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc------
Q 022641 61 KDVAHQEEVVRVLTNTLETANC------PH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG------ 126 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~------~~--ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~------ 126 (294)
+.++||++++..+..++...+. +. ++|.||.|+|||-+|+++|..+++. ...++.++.+....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs---e~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS---EENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC---ccceEEechhhhhhhhhccC
Confidence 4678999999999888865321 22 8999999999999999999999654 34555555543100
Q ss_pred ---hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----------CcceEEEEe
Q 022641 127 ---INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFIC 192 (294)
Q Consensus 127 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----------~~~~ii~~~ 192 (294)
.+........+... .....+.||++|||+..++..++.|+++++.+. .++.||+|+
T Consensus 639 sp~gyvG~e~gg~Ltea----------vrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTs 708 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEA----------VKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTS 708 (898)
T ss_pred CCcccccchhHHHHHHH----------HhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEec
Confidence 00001111111111 122445799999999999999999999998644 356678886
Q ss_pred cCC--------c--------------------------------ccchHhhcccc-EEEecCCCHHHHHHHHHHHH
Q 022641 193 NYI--------S--------------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHIC 227 (294)
Q Consensus 193 ~~~--------~--------------------------------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~ 227 (294)
|.. . ...+++.+|+. .+.|.|++.+++.+++....
T Consensus 709 n~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~ 784 (898)
T KOG1051|consen 709 NVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQL 784 (898)
T ss_pred ccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHH
Confidence 431 1 01234455555 66778888777776665544
No 268
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.93 E-value=1e-08 Score=90.31 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=91.8
Q ss_pred CCchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCC------------cEEEECCCCCCHHHHHHHHHHHhcCCCccCC
Q 022641 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP------------HMLFYGPPGTGKTTTALAIAHQLFGPELYKS 114 (294)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~------------~ill~Gp~G~GKT~la~~la~~~~~~~~~~~ 114 (294)
.+.|..++.-..---.+.|+..++..+.-.+..|... |+||+|.||||||..++.+++.. ..
T Consensus 435 kd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s------~R 508 (854)
T KOG0477|consen 435 KDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS------PR 508 (854)
T ss_pred cCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcC------cc
Confidence 3445555533333346779999999998888765332 49999999999999999998875 22
Q ss_pred cceeecCCC-Ccch--hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh----------
Q 022641 115 RVLELNASD-DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET---------- 181 (294)
Q Consensus 115 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~---------- 181 (294)
.++....+. ..+. +..+. .....+....+....+.+++++|||+|.++......+...|+.
T Consensus 509 AV~tTGqGASavGLTa~v~Kd------PvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGI 582 (854)
T KOG0477|consen 509 AVFTTGQGASAVGLTAYVRKD------PVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGI 582 (854)
T ss_pred eeEeccCCccccceeEEEeeC------CccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhH
Confidence 222221111 0110 00000 0001112223345567788999999999987766666666653
Q ss_pred ---hcCcceEEEEecCCc-------------ccchHhhccccEE
Q 022641 182 ---YSKVTRFFFICNYIS-------------RIIEPLASRCAKF 209 (294)
Q Consensus 182 ---~~~~~~ii~~~~~~~-------------~~~~~l~~r~~~i 209 (294)
....+.+|.++|+.. .+...+++||.++
T Consensus 583 VtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiL 626 (854)
T KOG0477|consen 583 VTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDIL 626 (854)
T ss_pred HHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhccee
Confidence 334566777776521 2557788998754
No 269
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.93 E-value=2.2e-08 Score=98.94 Aligned_cols=195 Identities=15% Similarity=0.084 Sum_probs=108.2
Q ss_pred CCcchhhcccHHHHHHHHHHHHcC--CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCccee---ecCCC--------
Q 022641 57 PKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE---LNASD-------- 123 (294)
Q Consensus 57 ~~~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~---~~~~~-------- 123 (294)
+..+++++|.+..++.+..++... ..+.+.|+|++|+||||+|+++++.+.... .+..++. +....
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F-~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF-QSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC-CeEEEeeccccccchhhcccccc
Confidence 346778999999999998887533 334599999999999999999988873322 1111110 00000
Q ss_pred -Ccc--hhHHHHHHHHHHhhhcccC---ccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcc
Q 022641 124 -DRG--INVVRTKIKTFAAVAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (294)
Q Consensus 124 -~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~ 197 (294)
... .......+..+........ .........++-+|+|||++.. ...+.|............||+||.+..-
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 000 0000111111111000000 0000112345679999998753 4455555444433455678888876432
Q ss_pred cchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHhhccCcHHHHHHH
Q 022641 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD--AEALSTLSSISQGDLRRAITY 256 (294)
Q Consensus 198 ~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l~~l~~~~~G~~r~~~~~ 256 (294)
+.. ..-..++.+..++.++..+++.+.+-......+ .+....++++|+|.|=.+..+
T Consensus 337 l~~--~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl 395 (1153)
T PLN03210 337 LRA--HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL 395 (1153)
T ss_pred HHh--cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 211 011247888999999999999887754332211 234566888899977554433
No 270
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.91 E-value=5.7e-10 Score=82.26 Aligned_cols=110 Identities=21% Similarity=0.297 Sum_probs=60.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCc--cCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCC--------CCC
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPEL--YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--------GYP 152 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 152 (294)
..++++||+|+|||+++..+++.+..... ....++.+++........+...+............... ...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 35999999999999999999998731100 02344444443333322222222222221111100000 000
Q ss_pred CCCcEEEEEeCCCCC-CHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 153 CPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 153 ~~~~~lliiDei~~l-~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
.....+|+|||+|.+ +....+.|..+.+ ...+.+|+++.+
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 012259999999999 8888888877766 466677777765
No 271
>PRK05907 hypothetical protein; Provisional
Probab=98.88 E-value=5.7e-07 Score=75.72 Aligned_cols=191 Identities=13% Similarity=0.105 Sum_probs=133.5
Q ss_pred HHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCC
Q 022641 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (294)
Q Consensus 70 ~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (294)
...+.+.+..+. +.++++|..- ......+.+.+..++. ..+++.+. . +...+......+
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~-----~~fdg~~~-~---~~~ii~~aetlP-------- 65 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK-----SEFDGQGL-L---QQELLSWTEHFG-------- 65 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc-----ceecCCCC-C---HHHHHHHHhcCC--------
Confidence 345555677777 8899999877 5555666555532221 22322221 2 233333333332
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEE-EEecCCcccchHhhc---cccEE----EecCCCHHHHHH
Q 022641 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF-FICNYISRIIEPLAS---RCAKF----RFKPLSEEVMSS 221 (294)
Q Consensus 150 ~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii-~~~~~~~~~~~~l~~---r~~~i----~~~~~~~~~~~~ 221 (294)
..+.+.+|++.+.+.+.....+.|..+++++++...+| ++.+ ..-.+.+.. ....+ .+.++...++..
T Consensus 66 --fFaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~--~d~~kkl~K~i~k~~~v~~~~e~~~l~e~~L~~ 141 (311)
T PRK05907 66 --LFASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTK--QECFSSLSKKLSSALCLSLFGEWFADRDKRIAQ 141 (311)
T ss_pred --cccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEec--ccHHHHHHHHHhhcceeccccccCCCCHHHHHH
Confidence 23456688888877776666788999999988865555 4442 111122222 24445 899999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHhhc-cCcHHHHHHHHHHHHHHh--CCCCChhhhhhhcccccCCCC
Q 022641 222 RVLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF--GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 222 ~l~~~~~~~~~~~~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~--~~~it~~~v~~~~~~~~~~~~ 285 (294)
++...+++.|..+++++++.+++.+ +||+..+.+.++.++.+. ++.||.++|..++......+.
T Consensus 142 Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nI 208 (311)
T PRK05907 142 LLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASL 208 (311)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccH
Confidence 9999999999999999999999999 699999999999999985 567999999999988776654
No 272
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=98.85 E-value=8.8e-07 Score=75.73 Aligned_cols=195 Identities=18% Similarity=0.107 Sum_probs=132.8
Q ss_pred HHHHHHHcCCC-CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCC
Q 022641 72 VLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (294)
Q Consensus 72 ~l~~~l~~~~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
++...+..+.. +.++|+|.-=--....+..+.+.+...+. ... +..+ ..+ +...+..+...+
T Consensus 5 ~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~-~~~-~~~~---~~~---~~~i~~~~~t~p--------- 67 (328)
T PRK08487 5 ELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENE-LKT-LYFD---EYD---FEQAKDFLSQSS--------- 67 (328)
T ss_pred HHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchH-hhh-hchh---hcc---HHHHHHHHhccc---------
Confidence 45555666543 55899998777777777777766532221 111 1111 112 223333333222
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcc---cchHhhcc--ccEEEecCCCHHHHHHHHHH
Q 022641 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR---IIEPLASR--CAKFRFKPLSEEVMSSRVLH 225 (294)
Q Consensus 151 ~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~---~~~~l~~r--~~~i~~~~~~~~~~~~~l~~ 225 (294)
..+.+.+|++.+...........|...++..+....+|+..+.... +...+... ...+.+.+++..++..++..
T Consensus 68 -lF~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~ 146 (328)
T PRK08487 68 -LFGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQE 146 (328)
T ss_pred -ccCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHH
Confidence 2345679999987766666667888888876655544443333221 11222222 34789999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhhhhhhcccccCCCC
Q 022641 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 226 ~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~ 285 (294)
.++..|+.+++++++.++..+++|...+.+-++.++.+.+ .||.++|..++....+.+.
T Consensus 147 ~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~-~It~edV~~~v~~~~e~~v 205 (328)
T PRK08487 147 RAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNE-PITLKDIQELVFGLGSVSF 205 (328)
T ss_pred HHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC-CCCHHHHHHHhcccccccH
Confidence 9999999999999999999999999999999999999854 7999999999988766544
No 273
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.84 E-value=1.3e-07 Score=69.80 Aligned_cols=24 Identities=46% Similarity=0.700 Sum_probs=22.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.+.++|+||+||||++.-++..+.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHH
Confidence 489999999999999999998884
No 274
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.80 E-value=7.3e-09 Score=81.05 Aligned_cols=46 Identities=26% Similarity=0.419 Sum_probs=32.2
Q ss_pred hhcccHHHHHHHHHHHH---cCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 62 DVAHQEEVVRVLTNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|++..++.+...+. .+..++++|+|++|+|||++++.+...+.
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999983 23345699999999999999999988874
No 275
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.79 E-value=3.7e-10 Score=96.17 Aligned_cols=146 Identities=21% Similarity=0.203 Sum_probs=75.3
Q ss_pred hhhcccHHHHHHHHHHHHcCCC------------CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchh
Q 022641 61 KDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~------------~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (294)
..+.|++..+..+.-.+..+.. -|++|+|.||+|||.+.+.+++-. ...+..++.......
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~-------pr~v~~~g~~~s~~g 96 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA-------PRSVYTSGKGSSAAG 96 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT--------SSEEEEECCGSTCCC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC-------CceEEECCCCcccCC
Confidence 3666888888777655544321 259999999999999999875443 222222211110000
Q ss_pred HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-------------hcCcceEEEEecCC
Q 022641 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET-------------YSKVTRFFFICNYI 195 (294)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~-------------~~~~~~ii~~~~~~ 195 (294)
........ .....+....+....+.+++++|||++.+.......|.+.|+. .+..+.++.++|+.
T Consensus 97 Lta~~~~d--~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~ 174 (331)
T PF00493_consen 97 LTASVSRD--PVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPK 174 (331)
T ss_dssp CCEEECCC--GGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--T
T ss_pred ccceeccc--cccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhh
Confidence 00000000 0000011112222334567999999999999999999999985 23456678888755
Q ss_pred c-------------ccchHhhccccEEE--ecCCC
Q 022641 196 S-------------RIIEPLASRCAKFR--FKPLS 215 (294)
Q Consensus 196 ~-------------~~~~~l~~r~~~i~--~~~~~ 215 (294)
. .+++.+++||..+. ..+++
T Consensus 175 ~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d 209 (331)
T PF00493_consen 175 FGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPD 209 (331)
T ss_dssp T--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT
T ss_pred hhhcchhhhhHHhcccchhhHhhcCEEEEeccccc
Confidence 3 26778999998442 34554
No 276
>PHA00729 NTP-binding motif containing protein
Probab=98.77 E-value=1.3e-07 Score=75.06 Aligned_cols=125 Identities=17% Similarity=0.156 Sum_probs=67.7
Q ss_pred HHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC-ccCCcceeecCCC---CcchhHHHHHHHHHHhhhcccCccCC
Q 022641 74 TNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASD---DRGINVVRTKIKTFAAVAVGSGQRRG 149 (294)
Q Consensus 74 ~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (294)
...+..+...+++|+|+|||||||+|.++++.+.... ............. ..+...+...+.......
T Consensus 9 ~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~-------- 80 (226)
T PHA00729 9 VSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDND-------- 80 (226)
T ss_pred HHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcC--------
Confidence 3344455556899999999999999999999872000 0000000011111 112222222232211110
Q ss_pred CCCCCCcEEEEEeCCCCCCHH-HHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHHH
Q 022641 150 GYPCPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (294)
Q Consensus 150 ~~~~~~~~lliiDei~~l~~~-~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~ 225 (294)
.+.++|||||++--... .+.. + . ....+.+.+.+++|+..+.+.+++.+++...++.
T Consensus 81 ----~~~dlLIIDd~G~~~~~~~wh~-----~----~------~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 81 ----YRIPLIIFDDAGIWLSKYVWYE-----D----Y------MKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred ----CCCCEEEEeCCchhhcccchhh-----h----c------cchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 12358999997542111 0000 0 0 0122445678888999999999999988888865
No 277
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.1e-07 Score=79.24 Aligned_cols=155 Identities=15% Similarity=0.248 Sum_probs=90.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC-Ccch------hHHHHHHHHHHhhhcccCccCCCCCCCCc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
.++|.||||+|||+||..+|..- ..+|+.+-... ..+. ..+...+......+.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S------~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l-------------- 599 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSS------DFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL-------------- 599 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhc------CCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc--------------
Confidence 49999999999999999999876 67777664332 2222 233334444333332
Q ss_pred EEEEEeCCCCC------CHHHHH----HHHHHHHhhcCc--ceEEEEecCCcccch--Hhhcccc-EEEecCCCH-HHHH
Q 022641 157 KIIILDEADSM------TEDAQN----ALRRTMETYSKV--TRFFFICNYISRIIE--PLASRCA-KFRFKPLSE-EVMS 220 (294)
Q Consensus 157 ~lliiDei~~l------~~~~~~----~L~~~l~~~~~~--~~ii~~~~~~~~~~~--~l~~r~~-~i~~~~~~~-~~~~ 220 (294)
.+|++|++++| .+...+ .|+-++...+.. ..+|+.|.....+.. .+.+.|. .+.++.++. +++.
T Consensus 600 siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~ 679 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLL 679 (744)
T ss_pred eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHH
Confidence 49999999876 244444 444444443433 445555554433332 2344555 788888876 6777
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhccC-----cHHHHHHHHHHHHHH
Q 022641 221 SRVLHICNEEGLNLDAEALSTLSSISQG-----DLRRAITYLQGAARL 263 (294)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~l~~l~~~~~G-----~~r~~~~~l~~~~~~ 263 (294)
+++. ..+. ++++..+.+++.--+ .+..++.+++.+...
T Consensus 680 ~vl~----~~n~-fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q~ 722 (744)
T KOG0741|consen 680 EVLE----ELNI-FSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQD 722 (744)
T ss_pred HHHH----HccC-CCcchhHHHHHHHhccccchhHHHHHHHHHHHhcc
Confidence 7763 2222 455555555544222 267777777765543
No 278
>PF14516 AAA_35: AAA-like domain
Probab=98.73 E-value=2e-06 Score=73.51 Aligned_cols=201 Identities=14% Similarity=0.087 Sum_probs=114.1
Q ss_pred hhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC-----cchhH-HHHHHH
Q 022641 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-----RGINV-VRTKIK 135 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~ 135 (294)
-.+.++.+-+.+.+.+... +..+.|.||..+|||++...+.+.+... +..++.++.... .+... ++....
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~---~~~~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ---GYRCVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred cccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC---CCEEEEEEeecCCCcccCCHHHHHHHHHH
Confidence 3456665666666666553 2369999999999999999999888433 334444443321 11111 111111
Q ss_pred HHHhhhc-------------ccCcc-------CCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHH----Hhhc-----C
Q 022641 136 TFAAVAV-------------GSGQR-------RGGYPCPPYKIIILDEADSMTE--DAQNALRRTM----ETYS-----K 184 (294)
Q Consensus 136 ~~~~~~~-------------~~~~~-------~~~~~~~~~~lliiDei~~l~~--~~~~~L~~~l----~~~~-----~ 184 (294)
.+..... +.... .......++-||+|||+|.+.. .....++..+ +... .
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 1111100 00000 0001225677999999998854 2233344444 3222 2
Q ss_pred cceEEEEecCCcccchHh----hccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHH
Q 022641 185 VTRFFFICNYISRIIEPL----ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (294)
Q Consensus 185 ~~~ii~~~~~~~~~~~~l----~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~ 260 (294)
..+++++......+.... .+....+.+++.+.+|+..+++ ..+..+++..++.|...++|.|--...++..+
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~----~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l 243 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQ----RYGLEFSQEQLEQLMDWTGGHPYLVQKACYLL 243 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHH----hhhccCCHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555543222111111 1334478999999999988774 45677888889999999999997766666666
Q ss_pred HHHhCCCCChhhh
Q 022641 261 ARLFGSSITSKDL 273 (294)
Q Consensus 261 ~~~~~~~it~~~v 273 (294)
+. ..++.+++
T Consensus 244 ~~---~~~~~~~l 253 (331)
T PF14516_consen 244 VE---EQITLEQL 253 (331)
T ss_pred HH---ccCcHHHH
Confidence 54 24454444
No 279
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.73 E-value=1.6e-07 Score=91.10 Aligned_cols=146 Identities=16% Similarity=0.236 Sum_probs=97.7
Q ss_pred HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCC
Q 022641 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (294)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
..+.+++..++ .++|-|.||+|||+++.++|+.. +..++.+|.++....- +.+........++......
T Consensus 1534 ~rVlRAmqv~k--pilLEGsPGVGKTSlItaLAr~t------G~kliRINLSeQTdL~---DLfGsd~Pve~~Gef~w~d 1602 (4600)
T COG5271 1534 RRVLRAMQVGK--PILLEGSPGVGKTSLITALARKT------GKKLIRINLSEQTDLC---DLFGSDLPVEEGGEFRWMD 1602 (4600)
T ss_pred HHHHHHHhcCC--ceeecCCCCccHHHHHHHHHHHh------cCceEEeeccccchHH---HHhCCCCCcccCceeEecc
Confidence 34555555555 59999999999999999999998 7888888877653321 1111111000000000000
Q ss_pred ----CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc--------------CcceEEEEecC------CcccchHhhccc
Q 022641 151 ----YPCPPYKIIILDEADSMTEDAQNALRRTMETYS--------------KVTRFFFICNY------ISRIIEPLASRC 206 (294)
Q Consensus 151 ----~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~--------------~~~~ii~~~~~------~~~~~~~l~~r~ 206 (294)
..-.+++-+++||+...+..+.+.|-..++.+. ++.+++.+-|+ ...++..+.+||
T Consensus 1603 apfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF 1682 (4600)
T COG5271 1603 APFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF 1682 (4600)
T ss_pred cHHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh
Confidence 011345699999999999999999988887543 33444444443 245899999999
Q ss_pred cEEEecCCCHHHHHHHHHHHH
Q 022641 207 AKFRFKPLSEEVMSSRVLHIC 227 (294)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~ 227 (294)
.++.+..++.+++..+.....
T Consensus 1683 svV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1683 SVVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred heEEecccccchHHHHHHhhC
Confidence 999999999999988875544
No 280
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.73 E-value=1e-07 Score=82.43 Aligned_cols=219 Identities=18% Similarity=0.168 Sum_probs=124.3
Q ss_pred hhhhcCCCcchhhcccHHHHHHHHHHHHcCCCC------------cEEEECCCCCCHHHHHHHHHHHhcCCCccCCccee
Q 022641 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP------------HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (294)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~------------~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~ 118 (294)
..+.....-...+.|+++.++.+.-.|+.|... |++|.|.|||.||.+++.+-+-. ...++.
T Consensus 321 ~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs------PIaVYT 394 (729)
T KOG0481|consen 321 VYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS------PIAVYT 394 (729)
T ss_pred HHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC------ceEEEe
Confidence 344444444446779999999998888775332 49999999999999999987653 112221
Q ss_pred ecCCCCcchh-----HHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh------------
Q 022641 119 LNASDDRGIN-----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET------------ 181 (294)
Q Consensus 119 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~------------ 181 (294)
...+.+.. .+++-.. ..+-. .-+....+..++++|||+|++.++..-.+.+.|+.
T Consensus 395 --SGKGSSAAGLTASV~RD~~t--ReFyl----EGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT 466 (729)
T KOG0481|consen 395 --SGKGSSAAGLTASVIRDPST--REFYL----EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITT 466 (729)
T ss_pred --cCCCcccccceeeEEecCCc--ceEEE----ecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhccee
Confidence 11111110 1110000 00000 01223456678999999999998887778877763
Q ss_pred -hcCcceEEEEecCCcc-------------cchHhhccccEEEec-----------------------------------
Q 022641 182 -YSKVTRFFFICNYISR-------------IIEPLASRCAKFRFK----------------------------------- 212 (294)
Q Consensus 182 -~~~~~~ii~~~~~~~~-------------~~~~l~~r~~~i~~~----------------------------------- 212 (294)
....++++.++|..+. ..+.+++||..|.+-
T Consensus 467 ~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~ 546 (729)
T KOG0481|consen 467 TLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENE 546 (729)
T ss_pred eecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCC
Confidence 2234455555565432 346788888743221
Q ss_pred -CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcc--------------------CcHHH---HHHHHHHHHHHh-CCC
Q 022641 213 -PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQ--------------------GDLRR---AITYLQGAARLF-GSS 267 (294)
Q Consensus 213 -~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~--------------------G~~r~---~~~~l~~~~~~~-~~~ 267 (294)
..+.+.++.++.+...+-+..+++++.+.|....= =.+|+ ++.+-+.+++.. +..
T Consensus 547 ~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ 626 (729)
T KOG0481|consen 547 GEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPF 626 (729)
T ss_pred CcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCcc
Confidence 11223444444443344566788888777664310 02333 333333344333 455
Q ss_pred CChhhhhhhcccccCC
Q 022641 268 ITSKDLISVSGYPTGG 283 (294)
Q Consensus 268 it~~~v~~~~~~~~~~ 283 (294)
.|.+|+.+++..+.-+
T Consensus 627 ate~hV~EA~RLF~vS 642 (729)
T KOG0481|consen 627 ATEAHVEEALRLFQVS 642 (729)
T ss_pred ccHHHHHHHHHHHhHh
Confidence 7888888887765544
No 281
>PRK10536 hypothetical protein; Provisional
Probab=98.72 E-value=1.7e-07 Score=75.59 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=44.5
Q ss_pred cCCchhhh-hcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 46 QSSQPWVE-KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 46 ~~~~~~~~-~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.+.+|+.. .....++..+.+.......+..++... ..++++||+|||||+++.+++.+..
T Consensus 39 ~~~~p~~~~~~~~~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 39 MGGVEAIGMARDSRDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred hccCCccccchhhcCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45566655 445556666777776777777777664 4799999999999999999999653
No 282
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.71 E-value=2.8e-08 Score=70.36 Aligned_cols=23 Identities=48% Similarity=0.925 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~ 107 (294)
|.|+||||+|||+++..|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999884
No 283
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.68 E-value=6.6e-09 Score=79.50 Aligned_cols=63 Identities=13% Similarity=0.270 Sum_probs=35.8
Q ss_pred CcEEEEEeCCCCC---CHHHHHHHHHHHHhhcCcceEEEEecC--CcccchHhhcc--ccEEEecCCCHHHHH
Q 022641 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFICNY--ISRIIEPLASR--CAKFRFKPLSEEVMS 220 (294)
Q Consensus 155 ~~~lliiDei~~l---~~~~~~~L~~~l~~~~~~~~ii~~~~~--~~~~~~~l~~r--~~~i~~~~~~~~~~~ 220 (294)
..++++|||++.+ .+...+.+..+++ ....+|.+-.. ...+.+++.+| +.++.+.+-+.+.+.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 4469999999987 3556777888877 23334444433 34567888887 557877776655443
No 284
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.68 E-value=8e-08 Score=77.81 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=116.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCc-cCCCCCCCCcEEEEEe
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ-RRGGYPCPPYKIIILD 162 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lliiD 162 (294)
.++|.||.|.|||.+|+.+-..-.........|+++||...++.......+........+... ..+....+..+++++|
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfld 289 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLD 289 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehH
Confidence 499999999999999998865443344457899999999888877666666655443332222 2344456778899999
Q ss_pred CCCCCCHHHHHHHHHHHHhhcC-----------cceEEEEe-cCC------cccchHhhccccEEEecCCCHHHHH----
Q 022641 163 EADSMTEDAQNALRRTMETYSK-----------VTRFFFIC-NYI------SRIIEPLASRCAKFRFKPLSEEVMS---- 220 (294)
Q Consensus 163 ei~~l~~~~~~~L~~~l~~~~~-----------~~~ii~~~-~~~------~~~~~~l~~r~~~i~~~~~~~~~~~---- 220 (294)
|++.+..+.+..|++.+++-.. ...+|.-| .+. ......+..|+....|.-|...+..
T Consensus 290 eigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~edie 369 (531)
T COG4650 290 EIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 (531)
T ss_pred hhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCccccC
Confidence 9999999999999999986321 11111111 110 0112233344444444333321111
Q ss_pred ----HHHHHHHHHhC--CCCCHHHHHH-HH------hhccCcHHHHHHHHHHHHHHh-CCCCChhhhhhhcc
Q 022641 221 ----SRVLHICNEEG--LNLDAEALST-LS------SISQGDLRRAITYLQGAARLF-GSSITSKDLISVSG 278 (294)
Q Consensus 221 ----~~l~~~~~~~~--~~~~~~~l~~-l~------~~~~G~~r~~~~~l~~~~~~~-~~~it~~~v~~~~~ 278 (294)
--+.+.+...| +.+..++-.. ++ ....||.|.+--.+...+..+ +..||.+.|+.-+.
T Consensus 370 pnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~~ve~ei~ 441 (531)
T COG4650 370 PNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLDVVEDEIN 441 (531)
T ss_pred CCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHHHHHHHHH
Confidence 12333444444 3344444322 22 125789999887777666555 66788877765443
No 285
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.67 E-value=3.8e-06 Score=73.46 Aligned_cols=190 Identities=19% Similarity=0.195 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCC-cchhHHHHHHHHHHhhhcccCc
Q 022641 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-RGINVVRTKIKTFAAVAVGSGQ 146 (294)
Q Consensus 68 ~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 146 (294)
.....+.+.+..... .++|+||.+|||||+++.+.+.+.. ..+.++..+. .......+....+......
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~------~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~--- 93 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLE------EIIYINFDDLRLDRIELLDLLRAYIELKER--- 93 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCc------ceEEEEecchhcchhhHHHHHHHHHHhhcc---
Confidence 444455555544443 7999999999999999888887722 1344443333 2223333333333332211
Q ss_pred cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCc----ccchHhhccccEEEecCCCHHHHHH-
Q 022641 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS----RIIEPLASRCAKFRFKPLSEEVMSS- 221 (294)
Q Consensus 147 ~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~----~~~~~l~~r~~~i~~~~~~~~~~~~- 221 (294)
+...++|||++.+.. -...+..+.+..+. .+++++.... .....+..|...+.+.|++..|...
T Consensus 94 --------~~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 --------EKSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred --------CCceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 345999999999853 33344444444333 4555554332 3456677888899999999988865
Q ss_pred ------------HHHHHHHHhCCC----CCH------HHH-----HHHHhhcc-CcHHHHHHHHHHHHHHhCCCCChhhh
Q 022641 222 ------------RVLHICNEEGLN----LDA------EAL-----STLSSISQ-GDLRRAITYLQGAARLFGSSITSKDL 273 (294)
Q Consensus 222 ------------~l~~~~~~~~~~----~~~------~~l-----~~l~~~~~-G~~r~~~~~l~~~~~~~~~~it~~~v 273 (294)
.+..++..-|.+ .+. +.+ ..+.+..+ -+...+..++.+++...+..++...+
T Consensus 163 ~~~~~~~~~~~~~f~~Yl~~GGfP~~v~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~k~i~~~l~~~~g~~~s~~~l 242 (398)
T COG1373 163 KGEEIEPSKLELLFEKYLETGGFPESVKADLSEKKLKEYLDTILKRDIIERGKIENADLMKRILRFLASNIGSPISYSSL 242 (398)
T ss_pred cccccchhHHHHHHHHHHHhCCCcHHHhCcchhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHhhcCCccCHHHH
Confidence 466677665654 111 111 12333332 24445556666777666777888887
Q ss_pred hhhcc
Q 022641 274 ISVSG 278 (294)
Q Consensus 274 ~~~~~ 278 (294)
...+.
T Consensus 243 a~~l~ 247 (398)
T COG1373 243 ARELK 247 (398)
T ss_pred HHHHh
Confidence 77764
No 286
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.64 E-value=8.4e-08 Score=75.65 Aligned_cols=120 Identities=22% Similarity=0.277 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHH----HHHhhhccc
Q 022641 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK----TFAAVAVGS 144 (294)
Q Consensus 69 ~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 144 (294)
....+...+.++ .+..++.||||||||+++..+...+... +..++.+.+.. .....+..... .+.......
T Consensus 6 Q~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~-~Aa~~L~~~~~~~a~Ti~~~l~~~ 80 (196)
T PF13604_consen 6 QREAVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTN-KAAKELREKTGIEAQTIHSFLYRI 80 (196)
T ss_dssp HHHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSH-HHHHHHHHHHTS-EEEHHHHTTEE
T ss_pred HHHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcH-HHHHHHHHhhCcchhhHHHHHhcC
Confidence 344444455443 3458889999999999999988877321 23344333322 22222332211 000000000
Q ss_pred Cc--cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCC
Q 022641 145 GQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (294)
Q Consensus 145 ~~--~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~ 195 (294)
.. ........+..+|||||+..++......|+..+.. ....+|+++...
T Consensus 81 ~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 81 PNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred CcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 00 00111134567999999999999888888877765 456688887544
No 287
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.61 E-value=1.6e-05 Score=68.09 Aligned_cols=109 Identities=14% Similarity=0.126 Sum_probs=68.5
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhhc--CcceEEEEecCCc---------------ccchHhhccc-c-EEEecCC
Q 022641 154 PPYKIIILDEADSMTEDAQNALRRTMETYS--KVTRFFFICNYIS---------------RIIEPLASRC-A-KFRFKPL 214 (294)
Q Consensus 154 ~~~~lliiDei~~l~~~~~~~L~~~l~~~~--~~~~ii~~~~~~~---------------~~~~~l~~r~-~-~i~~~~~ 214 (294)
.++-|++|||+|+++++....++..+...- .++.+|++.+... ......+.++ + .+.++++
T Consensus 171 ~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~ 250 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPP 250 (325)
T ss_pred CceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCC
Confidence 457799999999999887777776666433 3555666664221 1223344444 3 6899999
Q ss_pred CHHHHHHHHHHHHHHhCCC----CC---------------HHHHHHHHhh---ccCcHHHHHHHHHHHHH
Q 022641 215 SEEVMSSRVLHICNEEGLN----LD---------------AEALSTLSSI---SQGDLRRAITYLQGAAR 262 (294)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~----~~---------------~~~l~~l~~~---~~G~~r~~~~~l~~~~~ 262 (294)
+..++..++...+...... .+ ...+..+... ..++||.+.+.+.....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN~~~~ 320 (325)
T PF07693_consen 251 SPSDLERYLNELLESLESETNESDDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFINSLSL 320 (325)
T ss_pred CHHHHHHHHHHHHHHhhhccccccchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Confidence 9999998888876543221 11 1233344432 35789988887776554
No 288
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.60 E-value=8.9e-07 Score=73.09 Aligned_cols=165 Identities=14% Similarity=0.107 Sum_probs=93.1
Q ss_pred hhcccHHHHHHHHHHHH----cCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHH
Q 022641 62 DVAHQEEVVRVLTNTLE----TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~----~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
.+.|..+....+.+|+. .|....++++||.|+|||.+....... ..+...+.-.+.+|+.-....-.+.+...++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 45566555555555554 466666999999999999998776655 2233334444555655444333333333333
Q ss_pred HhhhcccCcc----------------CCCCCCCCcEEEEEeCCCCCCHHH-HHH---HHHHHHhhcCcceEEEEecCC--
Q 022641 138 AAVAVGSGQR----------------RGGYPCPPYKIIILDEADSMTEDA-QNA---LRRTMETYSKVTRFFFICNYI-- 195 (294)
Q Consensus 138 ~~~~~~~~~~----------------~~~~~~~~~~lliiDei~~l~~~~-~~~---L~~~l~~~~~~~~ii~~~~~~-- 195 (294)
.......... .+....+..-+.|+||+|..-+.. +-. |+++.+....++++|..|...
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 2221111110 122222333566778999774432 333 344444555667777766544
Q ss_pred -cccchHhhcccc--EEEe-cCCCHHHHHHHHHHHH
Q 022641 196 -SRIIEPLASRCA--KFRF-KPLSEEVMSSRVLHIC 227 (294)
Q Consensus 196 -~~~~~~l~~r~~--~i~~-~~~~~~~~~~~l~~~~ 227 (294)
..+-+++.+||. .|.+ ++.+-.+...+++..+
T Consensus 184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 345678889996 3555 4456788888887666
No 289
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=98.57 E-value=2.4e-07 Score=71.62 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=79.8
Q ss_pred CCCcEEEEEeCC----CCCCHHHHHHHHHHHHhhcCcceEEEEec-CCc---ccchHhhccccEEEecCCCHHHHHHHHH
Q 022641 153 CPPYKIIILDEA----DSMTEDAQNALRRTMETYSKVTRFFFICN-YIS---RIIEPLASRCAKFRFKPLSEEVMSSRVL 224 (294)
Q Consensus 153 ~~~~~lliiDei----~~l~~~~~~~L~~~l~~~~~~~~ii~~~~-~~~---~~~~~l~~r~~~i~~~~~~~~~~~~~l~ 224 (294)
.+.+.+|+|.++ +.........|...+...+....+|+.++ ... .+...+...+.++.+.++...++..+++
T Consensus 55 F~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~ 134 (172)
T PF06144_consen 55 FGDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIK 134 (172)
T ss_dssp SSSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHH
T ss_pred cCCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHH
Confidence 345679999998 44566778889999998888888888877 222 2445566677789999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHH
Q 022641 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (294)
Q Consensus 225 ~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~ 261 (294)
..+++.|+.+++++++.+++.+++|++.+.+.++..+
T Consensus 135 ~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 135 ERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp HHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998765
No 290
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.55 E-value=5.3e-06 Score=69.72 Aligned_cols=197 Identities=18% Similarity=0.163 Sum_probs=109.7
Q ss_pred hhhcccHHHHHHHHHHHHcCCC---CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcch----------
Q 022641 61 KDVAHQEEVVRVLTNTLETANC---PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI---------- 127 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~---~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~---------- 127 (294)
..+.+++..+..|...+..... .+++|+|.+|||||.+++.+.+.... +.+-+++..-...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC------cceeeehHHhccHHHHHHHHHHH
Confidence 4567888899999888866432 34799999999999999999998722 2222222111111
Q ss_pred ---------------hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCC---HHHHHHHHHHHHhhcCcceEE
Q 022641 128 ---------------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---EDAQNALRRTMETYSKVTRFF 189 (294)
Q Consensus 128 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~---~~~~~~L~~~l~~~~~~~~ii 189 (294)
..+.+.+..+...... ...++.-+|++|++|.+. ....+.|+++-+-.+.+...|
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~-------t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~i 152 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAA-------TNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVI 152 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHh-------hccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEE
Confidence 1111112221111000 111345699999999874 445666666665555555444
Q ss_pred EEecCCcccchHhh---cc-c-cEEEecCCCHHHHHHHHHHHHH-HhCCCCCHHHH----HHHHhhccCcHHHHHHHHHH
Q 022641 190 FICNYISRIIEPLA---SR-C-AKFRFKPLSEEVMSSRVLHICN-EEGLNLDAEAL----STLSSISQGDLRRAITYLQG 259 (294)
Q Consensus 190 ~~~~~~~~~~~~l~---~r-~-~~i~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l----~~l~~~~~G~~r~~~~~l~~ 259 (294)
+.+..... .... +. + ..+.|+.++.++...++.+--. +...++-.+-+ +.....|. |+..+..++..
T Consensus 153 ils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 153 ILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred EEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 44433321 1111 11 1 2789999999999999854322 11111111222 22333355 99999888887
Q ss_pred HHHHhCCCCChhhh
Q 022641 260 AARLFGSSITSKDL 273 (294)
Q Consensus 260 ~~~~~~~~it~~~v 273 (294)
+....-+.|+...+
T Consensus 230 ~wpky~epi~~~~i 243 (438)
T KOG2543|consen 230 AWPKYCEPITKGKI 243 (438)
T ss_pred HHHhhccccccCCC
Confidence 76554344444433
No 291
>PHA02774 E1; Provisional
Probab=98.54 E-value=9.9e-07 Score=78.66 Aligned_cols=136 Identities=23% Similarity=0.337 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCC-CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCccee-ecCCCCcchhHHHHHHHHHHhhhcccCc
Q 022641 69 VVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE-LNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (294)
Q Consensus 69 ~~~~l~~~l~~~~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (294)
....|+.++..... ..++|+||||||||+++.+|++.+ ...++. +|..+..- +..
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L------~G~vi~fvN~~s~Fw-------Lqp---------- 476 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL------KGKVISFVNSKSHFW-------LQP---------- 476 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEEECccccc-------cch----------
Confidence 44667777765443 459999999999999999999987 333322 34321111 111
Q ss_pred cCCCCCCCCcEEEEEeCCCCCCHH-HHHHHHHHHHhhc-------------CcceEEEEecCCccc---chHhhccccEE
Q 022641 147 RRGGYPCPPYKIIILDEADSMTED-AQNALRRTMETYS-------------KVTRFFFICNYISRI---IEPLASRCAKF 209 (294)
Q Consensus 147 ~~~~~~~~~~~lliiDei~~l~~~-~~~~L~~~l~~~~-------------~~~~ii~~~~~~~~~---~~~l~~r~~~i 209 (294)
....++++|||+-.-... ....|+.+++..+ ....+|+|||..... ...|.+|+..+
T Consensus 477 ------l~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f 550 (613)
T PHA02774 477 ------LADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVF 550 (613)
T ss_pred ------hccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEE
Confidence 112359999999332112 2335677776532 124588999865433 34566788777
Q ss_pred EecC-------------CCHHHHHHHHHHHHHHhCCC
Q 022641 210 RFKP-------------LSEEVMSSRVLHICNEEGLN 233 (294)
Q Consensus 210 ~~~~-------------~~~~~~~~~l~~~~~~~~~~ 233 (294)
.|+. ++....+.++++...+-.+.
T Consensus 551 ~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 551 EFPNPFPLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred ECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 6642 34578889998888775543
No 292
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.53 E-value=5.4e-07 Score=87.70 Aligned_cols=150 Identities=19% Similarity=0.284 Sum_probs=101.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhccc-CccCCCC--CCCCcEEEE
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGGY--PCPPYKIII 160 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~lli 160 (294)
.++|.||..+|||+++..+++.. +..|+.+|....... .+.+..+.....+. ..+.+.. ...++.-|+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t------ghkfVRINNHEHTdl---qeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIV 960 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET------GHKFVRINNHEHTDL---QEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIV 960 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh------CccEEEecCcccchH---HHHhhceeecCCCceeeehhHHHHHHhcCcEEE
Confidence 49999999999999999999998 778888876554332 22222222111110 0011100 113445999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhhc--------------CcceEEEEecCCc------ccchHhhccccEEEecCCCHHHHH
Q 022641 161 LDEADSMTEDAQNALRRTMETYS--------------KVTRFFFICNYIS------RIIEPLASRCAKFRFKPLSEEVMS 220 (294)
Q Consensus 161 iDei~~l~~~~~~~L~~~l~~~~--------------~~~~ii~~~~~~~------~~~~~l~~r~~~i~~~~~~~~~~~ 220 (294)
+||+...+.++.+.|-+++++.. +.+.++.|-|+|. .+..++++||..++|...+.+++.
T Consensus 961 LDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle 1040 (4600)
T COG5271 961 LDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELE 1040 (4600)
T ss_pred eeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHH
Confidence 99999999999999999997422 3444444445442 367899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhhcc
Q 022641 221 SRVLHICNEEGLNLDAEALSTLSSISQ 247 (294)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~l~~l~~~~~ 247 (294)
.+|.. ++.+.+.-...+++...
T Consensus 1041 ~ILh~-----rc~iapSyakKiVeVyr 1062 (4600)
T COG5271 1041 EILHG-----RCEIAPSYAKKIVEVYR 1062 (4600)
T ss_pred HHHhc-----cCccCHHHHHHHHHHHH
Confidence 99954 44566766666666543
No 293
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.53 E-value=7.5e-06 Score=65.82 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=72.1
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc---------------chhHHHHHHHHHHhhhcccCccC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR---------------GINVVRTKIKTFAAVAVGSGQRR 148 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~ 148 (294)
++++.|++|+|||+++..+...+.... ..++.+...... ..+.+...+............+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f---~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKF---DHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccC---CEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 599999999999999999987762211 111111111100 01111111111111000000000
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH-hhcCcceEEEEecCCcccchHhhccccEEEecCCCHHHHHHHHH
Q 022641 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTME-TYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224 (294)
Q Consensus 149 ~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~-~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~ 224 (294)
.......+.+||+||+..-.. ....+..++. .+.....+|+++.....+++.++.-+..+-+-..+..++..+++
T Consensus 92 ~~~k~~~~~LiIlDD~~~~~~-k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~ 167 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDKKL-KSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYR 167 (241)
T ss_pred cccCCCCCeEEEEeCCCCchh-hhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHH
Confidence 111134467999999865211 1223444443 34456778899988899999988877754444567666655543
No 294
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=98.50 E-value=3.4e-07 Score=68.81 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=37.8
Q ss_pred CCcEEEEEeCCCCC-C--HHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhcccc
Q 022641 154 PPYKIIILDEADSM-T--EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (294)
Q Consensus 154 ~~~~lliiDei~~l-~--~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~ 207 (294)
...++|||||+... + .-..+.++++++..+....+|+|++... +.+..+..
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p---~~l~e~AD 147 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP---KELIEAAD 147 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC---HHHHHhCc
Confidence 45789999999765 2 1235678889999999999999997754 45555544
No 295
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.48 E-value=2.6e-06 Score=78.41 Aligned_cols=187 Identities=17% Similarity=0.171 Sum_probs=115.4
Q ss_pred cCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHH
Q 022641 55 YRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (294)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (294)
..|......+-++.....|.... ..+-++|.-|.|.||||++..++..+ ........+.++.++........-.+
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~~---~~RL~li~APAGfGKttl~aq~~~~~--~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRAN---DYRLILISAPAGFGKTTLLAQWRELA--ADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCCcccccccHHHHHHHhcCC---CceEEEEeCCCCCcHHHHHHHHHHhc--CcccceeEeecCCccCCHHHHHHHHH
Confidence 33445556666666655554222 22349999999999999999998733 33334445556666555555544444
Q ss_pred HHHHhhhcccCccCC---------------------CCCCCCcEEEEEeCCCCCCHH-HHHHHHHHHHhhcCcceEEEEe
Q 022641 135 KTFAAVAVGSGQRRG---------------------GYPCPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFIC 192 (294)
Q Consensus 135 ~~~~~~~~~~~~~~~---------------------~~~~~~~~lliiDei~~l~~~-~~~~L~~~l~~~~~~~~ii~~~ 192 (294)
..+.......+.... .....++-+++|||.|.++.. ....+...++..+.+..+|++|
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 443322221111000 012244569999999999754 4556777788889999999999
Q ss_pred cCCcccc-hHhhccccEEEec----CCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHhhccCcH
Q 022641 193 NYISRII-EPLASRCAKFRFK----PLSEEVMSSRVLHICNEEG-LNLDAEALSTLSSISQGDL 250 (294)
Q Consensus 193 ~~~~~~~-~~l~~r~~~i~~~----~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~l~~~~~G~~ 250 (294)
.....+. ..++=|-..+++. .++.+|..+++. ..+ ..++...++.|.+.++|=+
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~----~~~~l~Ld~~~~~~L~~~teGW~ 227 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLN----DRGSLPLDAADLKALYDRTEGWA 227 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHH----HcCCCCCChHHHHHHHhhcccHH
Confidence 7554332 2232232333332 457788888874 344 8899999999999999843
No 296
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.46 E-value=2.5e-05 Score=67.38 Aligned_cols=75 Identities=15% Similarity=0.309 Sum_probs=51.4
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhh------cCcceEEEEecCCc---ccchHhhccc-cEEEecCCCHHHHHHHHH
Q 022641 155 PYKIIILDEADSMTEDAQNALRRTMETY------SKVTRFFFICNYIS---RIIEPLASRC-AKFRFKPLSEEVMSSRVL 224 (294)
Q Consensus 155 ~~~lliiDei~~l~~~~~~~L~~~l~~~------~~~~~ii~~~~~~~---~~~~~l~~r~-~~i~~~~~~~~~~~~~l~ 224 (294)
.+.||+||++.+-... .+.+.+.+.+. ..-..||++|++.. .+.+++-++. ..|.+.-.+.+..+.++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3579999999765433 44444444321 24456788886543 4566776664 489999999999999998
Q ss_pred HHHHHh
Q 022641 225 HICNEE 230 (294)
Q Consensus 225 ~~~~~~ 230 (294)
..+...
T Consensus 227 ~~L~~~ 232 (431)
T PF10443_consen 227 SQLDED 232 (431)
T ss_pred HHhccc
Confidence 888653
No 297
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.44 E-value=1.8e-06 Score=79.04 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=61.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHh--------------------hhcc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA--------------------VAVG 143 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 143 (294)
..+|+|+|||||||++..+...+..........+.+.++.......+.+.+..... ...+
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg 248 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLG 248 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhC
Confidence 49999999999999999988776321111112344444444444444333321100 0001
Q ss_pred cCccC-----CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 144 SGQRR-----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 144 ~~~~~-----~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
..... .....-..++|||||+.+++......|++.+ +...++|+++..
T Consensus 249 ~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~ 301 (615)
T PRK10875 249 AQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDR 301 (615)
T ss_pred cCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecch
Confidence 00000 0011123479999999999888777777665 566788888853
No 298
>PHA02624 large T antigen; Provisional
Probab=98.40 E-value=2.2e-06 Score=76.77 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=69.0
Q ss_pred HHHHHHcCCC-CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCC
Q 022641 73 LTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (294)
Q Consensus 73 l~~~l~~~~~-~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (294)
++.++..-.. ..++|+||||||||+++.+|++.+ +..++.++.+...+.- .+..+.+
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L------~G~vlsVNsPt~ks~F----wL~pl~D------------ 478 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLC------GGKSLNVNCPPDKLNF----ELGCAID------------ 478 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHc------CCeEEEeeCCcchhHH----Hhhhhhh------------
Confidence 3344433232 349999999999999999999998 5556666644432211 1111111
Q ss_pred CCCCcEEEEEeCCCCCCH-------H----HHHHHHHHHHhh-c-------------CcceEEEEecCCcccchHhhccc
Q 022641 152 PCPPYKIIILDEADSMTE-------D----AQNALRRTMETY-S-------------KVTRFFFICNYISRIIEPLASRC 206 (294)
Q Consensus 152 ~~~~~~lliiDei~~l~~-------~----~~~~L~~~l~~~-~-------------~~~~ii~~~~~~~~~~~~l~~r~ 206 (294)
..+++|||+-.-.. . -...|+..++.. + .-...|+|+|... ++..+.-||
T Consensus 479 ----~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney~-iP~T~~~Rf 553 (647)
T PHA02624 479 ----QFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEYL-IPQTVKARF 553 (647)
T ss_pred ----ceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCcc-cchhHHHHH
Confidence 23889999843211 1 124566666643 1 1123777887754 677888888
Q ss_pred c-EEEecCC
Q 022641 207 A-KFRFKPL 214 (294)
Q Consensus 207 ~-~i~~~~~ 214 (294)
. .+.|.+-
T Consensus 554 ~~~~~F~~k 562 (647)
T PHA02624 554 AKVLDFKPK 562 (647)
T ss_pred HHhcccccc
Confidence 7 6777553
No 299
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.39 E-value=1.5e-06 Score=74.71 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=62.9
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCC------C-cchhHHHHHHHHHHhhhcccCccCCCCCCC
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD------D-RGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (294)
+++++|+||+|+|||+|.-.+...+.........|..+-..- . ...+.+......+ ..
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l---------------~~ 126 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL---------------AK 126 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH---------------Hh
Confidence 456999999999999999999888732211111111110000 0 0000111111111 12
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHh-hcCcceEEEEecCCcc--------------cchHhhccccEEEecCC
Q 022641 155 PYKIIILDEADSMTEDAQNALRRTMET-YSKVTRFFFICNYISR--------------IIEPLASRCAKFRFKPL 214 (294)
Q Consensus 155 ~~~lliiDei~~l~~~~~~~L~~~l~~-~~~~~~ii~~~~~~~~--------------~~~~l~~r~~~i~~~~~ 214 (294)
+..+|++||++--+....-.|..+++. +...+++|+|+|.+.. ..+.+.++|.++.+...
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 334999999987665443333334433 2356667777775422 12445667887777654
No 300
>PRK04296 thymidine kinase; Provisional
Probab=98.38 E-value=4.2e-06 Score=65.67 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=52.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC-CCcc-----------------hhHHHHHHHHHHhhhcccC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRG-----------------INVVRTKIKTFAAVAVGSG 145 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~ 145 (294)
..+++||+|+||||++..++.++... +..++.+.+. +.+. .....+.+..+..
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~------ 74 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE------ 74 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh------
Confidence 47899999999999999998887432 1222222211 0000 0001111111111
Q ss_pred ccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 146 ~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
...+.++|+|||++.++.+....|.+.+.. ....+|+++..
T Consensus 75 ------~~~~~dvviIDEaq~l~~~~v~~l~~~l~~--~g~~vi~tgl~ 115 (190)
T PRK04296 75 ------EGEKIDCVLIDEAQFLDKEQVVQLAEVLDD--LGIPVICYGLD 115 (190)
T ss_pred ------hCCCCCEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEecC
Confidence 113457999999999987655555555543 45556776643
No 301
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=98.38 E-value=2.2e-06 Score=74.34 Aligned_cols=111 Identities=22% Similarity=0.328 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHH-H-HHHHHHHhhhcc
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV-R-TKIKTFAAVAVG 143 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 143 (294)
|..+...+.+.+....+.++++.||.|||||++.+++...+... +..+. +.++.......+ . ..+..+...+..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~~~~~-~~a~tg~AA~~i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---GKKVL-VTAPTGIAAFNIPGGRTIHSFFGIPIN 81 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---cceEE-EecchHHHHHhccCCcchHHhcCcccc
Confidence 44555566666666666679999999999999999999887321 11122 222221111111 0 011111111111
Q ss_pred cCc---------cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH
Q 022641 144 SGQ---------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (294)
Q Consensus 144 ~~~---------~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~ 180 (294)
... .........-++|||||+-+++......+-..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 82 NNEKSQCKISKNSRLRERLRKADVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred ccccccccccccchhhhhhhhheeeecccccchhHHHHHHHHHhhh
Confidence 000 0111123445799999999998887766544443
No 302
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.37 E-value=4.8e-06 Score=73.46 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=95.5
Q ss_pred hhcccHHHHHHHHHHHHcCCC------------CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee--cCCCCcch
Q 022641 62 DVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL--NASDDRGI 127 (294)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~------------~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~--~~~~~~~~ 127 (294)
.+.|++-+++.+.-.|-.|-. =|++++|.|.+.||.|++.+.+.+.. -+.. .++++.+.
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntApl-------AI~TTGRGSSGVGL 374 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPL-------AIATTGRGSSGVGL 374 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccc-------cccccCCCCCCccc
Confidence 567999888888777644311 14999999999999999999887621 1111 11221111
Q ss_pred hHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-------------hcCcceEEEEecC
Q 022641 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET-------------YSKVTRFFFICNY 194 (294)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~-------------~~~~~~ii~~~~~ 194 (294)
......-.. ........+....+.+++++|||+|+++....-.+..+|+. ....++++.++|+
T Consensus 375 TAAVTtD~e----TGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANP 450 (818)
T KOG0479|consen 375 TAAVTTDQE----TGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANP 450 (818)
T ss_pred eeEEeeccc----cchhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCc
Confidence 100000000 00000112334556788999999999998888888888874 3456778888875
Q ss_pred Cc-------------ccchHhhcccc--EEEecCCCHHHHHHHHHHHHH
Q 022641 195 IS-------------RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICN 228 (294)
Q Consensus 195 ~~-------------~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~ 228 (294)
.. .+++.+++||. .+-+...+...=..+-.++++
T Consensus 451 vyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 451 VYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred cccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 42 27899999998 455555555444444444444
No 303
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=98.37 E-value=9e-05 Score=63.58 Aligned_cols=198 Identities=17% Similarity=0.157 Sum_probs=126.3
Q ss_pred HHHHHHcC-CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCC
Q 022641 73 LTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (294)
Q Consensus 73 l~~~l~~~-~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (294)
+...+..+ ..+-++++|+-=-=....+..+..... .+........... . ...+...........
T Consensus 6 ~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~-~~~~~~~~~~~~~-~---~~~~~~~~~~~~s~~---------- 70 (334)
T COG1466 6 LAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL-ADGFDENYSFFDD-S---ELDWADLLSELESPS---------- 70 (334)
T ss_pred HHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHh-ccchhhHHhhccc-c---cCCHHHHHHHhhccc----------
Confidence 34444444 334589999876555556666666552 1111111111111 1 111222222222221
Q ss_pred CCCCcEEEEEeCCCCCC-HHHHHHHHHHHHhhc-CcceEEEEecCCcc---cchHhhcc--ccEEEecCCCHHHHHHHHH
Q 022641 152 PCPPYKIIILDEADSMT-EDAQNALRRTMETYS-KVTRFFFICNYISR---IIEPLASR--CAKFRFKPLSEEVMSSRVL 224 (294)
Q Consensus 152 ~~~~~~lliiDei~~l~-~~~~~~L~~~l~~~~-~~~~ii~~~~~~~~---~~~~l~~r--~~~i~~~~~~~~~~~~~l~ 224 (294)
..+...+++|....... ......+.......+ ....+++.++.... ....+..- ...+.+.|++..++..++.
T Consensus 71 lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~ 150 (334)
T COG1466 71 LFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIK 150 (334)
T ss_pred cccCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHH
Confidence 22334689999888765 444555555665555 44444444433322 21222221 4589999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHh-CCCCChhhhhhhcccccCCCC
Q 022641 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGYPTGGSG 285 (294)
Q Consensus 225 ~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~-~~~it~~~v~~~~~~~~~~~~ 285 (294)
..++..|+.+++++++.++...+||...+.+.++..+.+. ++.||.++|..++......+.
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~ 212 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNI 212 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCH
Confidence 9999999999999999999999999999999999999988 348999999999988776654
No 304
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.32 E-value=6.6e-06 Score=75.24 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCcc-CCcceeecCCCCcchhHHHHHHHHHHh----------
Q 022641 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDDRGINVVRTKIKTFAA---------- 139 (294)
Q Consensus 71 ~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 139 (294)
..+...+.. +..+|+|+|||||||++..+...+...... ...-+.+.+........+.+.+.....
T Consensus 152 ~A~~~al~~---~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~ 228 (586)
T TIGR01447 152 VAVALALKS---NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIA 228 (586)
T ss_pred HHHHHHhhC---CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhh
Confidence 344444443 359999999999999999988776321110 111233444443333333333222100
Q ss_pred ----------hhcccCc-----cCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 140 ----------VAVGSGQ-----RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 140 ----------~~~~~~~-----~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
...+... ..........++|||||+.+++......|++.+ +....+|+++..
T Consensus 229 ~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~ 295 (586)
T TIGR01447 229 ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK 295 (586)
T ss_pred ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence 0000000 000011124579999999999988777776655 456778888743
No 305
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.32 E-value=5.8e-06 Score=77.68 Aligned_cols=120 Identities=19% Similarity=0.180 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH-------HHHHHh
Q 022641 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK-------IKTFAA 139 (294)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 139 (294)
+.....+..+.. .+.++|+|+||||||++++++...+..... ... +.+.++.......+.+. +..+..
T Consensus 326 ~~Q~~Ai~~~~~---~~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~-v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~ 400 (720)
T TIGR01448 326 EEQKQALDTAIQ---HKVVILTGGPGTGKTTITRAIIELAEELGG-LLP-VGLAAPTGRAAKRLGEVTGLTASTIHRLLG 400 (720)
T ss_pred HHHHHHHHHHHh---CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-Cce-EEEEeCchHHHHHHHHhcCCccccHHHHhh
Confidence 344444444432 236999999999999999999887732210 022 22333332222222221 111111
Q ss_pred hhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
.................++|||||+.+++......|+..+ +....+|+++..
T Consensus 401 ~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~ 452 (720)
T TIGR01448 401 YGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDT 452 (720)
T ss_pred ccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECcc
Confidence 1000000000011234679999999999988777777654 456778888743
No 306
>PRK13695 putative NTPase; Provisional
Probab=98.32 E-value=1.1e-05 Score=62.55 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=45.2
Q ss_pred CcEEEEEeCCCCCC---HHHHHHHHHHHHhhcCcceEEEEecCCc--ccchHhhcccc--EEEecCCCHHHHHHHHHHHH
Q 022641 155 PYKIIILDEADSMT---EDAQNALRRTMETYSKVTRFFFICNYIS--RIIEPLASRCA--KFRFKPLSEEVMSSRVLHIC 227 (294)
Q Consensus 155 ~~~lliiDei~~l~---~~~~~~L~~~l~~~~~~~~ii~~~~~~~--~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~ 227 (294)
+.++|++||++.+. ....+.+..+++ ....+|++++... ...+++..+.. ++.+.+-+.+++...+.+..
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 56799999976553 334555666653 3456777887643 34556666554 78888888887777665543
No 307
>PRK04132 replication factor C small subunit; Provisional
Probab=98.31 E-value=6.7e-07 Score=84.01 Aligned_cols=51 Identities=49% Similarity=0.999 Sum_probs=47.7
Q ss_pred CchhhhhcCCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHH
Q 022641 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98 (294)
Q Consensus 48 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~l 98 (294)
..||.++|+|..|++++|++..+..|..++..+..++++|+||||+||+..
T Consensus 6 ~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 6 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred cccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 459999999999999999999999999999999999999999999999643
No 308
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=98.28 E-value=4.6e-05 Score=64.44 Aligned_cols=48 Identities=21% Similarity=0.085 Sum_probs=39.2
Q ss_pred EEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHhhccCcHHHHHH
Q 022641 208 KFRFKPLSEEVMSSRVLHICNEEGL---NLDAEALSTLSSISQGDLRRAIT 255 (294)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~l~~l~~~~~G~~r~~~~ 255 (294)
.+.+++++.+|.+.+++.+....-+ ..++...+.+.-.++||+|++.+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 7899999999999999988865443 24566778888888999998764
No 309
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.28 E-value=7e-06 Score=78.38 Aligned_cols=193 Identities=11% Similarity=0.006 Sum_probs=112.3
Q ss_pred cccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc-CCCccCCcceeecCCCCcchhHHHHHHHHHHhhhc
Q 022641 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142 (294)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (294)
+|++..++.+...+.......+-++|-.|+||||||+.+-+... -...++...+.+-..+........+.+..+.....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 99999999999999888777899999999999999999988774 22222222222211121122222222222211111
Q ss_pred ccCcc--------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEEecCC
Q 022641 143 GSGQR--------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214 (294)
Q Consensus 143 ~~~~~--------~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~~~~~ 214 (294)
..... .......++-+|++||+..=. .++.+...+-.......+++||+... +-.........+++.-+
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~-V~~~~m~~~~~~~v~~L 317 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEE-VCGRAMGVDYPIEVECL 317 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHh-hhhccccCCcccccccc
Confidence 11110 001223566799999996521 23333322222233467888886643 11222233456788888
Q ss_pred CHHHHHHHHHHHHHHhCCC--C-CHHHHHHHHhhccCcHHHHHHHHHH
Q 022641 215 SEEVMSSRVLHICNEEGLN--L-DAEALSTLSSISQGDLRRAITYLQG 259 (294)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~--~-~~~~l~~l~~~~~G~~r~~~~~l~~ 259 (294)
+.++.-+.+.+.+-..... . -++....+++.|+|-|-.+..+-..
T Consensus 318 ~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ 365 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGL 365 (889)
T ss_pred CccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 9999999998777433222 1 3667778888899977655544443
No 310
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.27 E-value=2.2e-05 Score=75.00 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=70.6
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhhc--Cc--ceEEEEecCCcccchHhhc--cccEEEecCCCHHHHHHHHHHHH
Q 022641 154 PPYKIIILDEADSMTEDAQNALRRTMETYS--KV--TRFFFICNYISRIIEPLAS--RCAKFRFKPLSEEVMSSRVLHIC 227 (294)
Q Consensus 154 ~~~~lliiDei~~l~~~~~~~L~~~l~~~~--~~--~~ii~~~~~~~~~~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~ 227 (294)
.++-++|+||+|..++...+.|-.++.... .. ..+..+.+..........+ ....|.+.|++..+...++...+
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 347799999999999988888887777643 00 0111111111122222222 33489999999999999998877
Q ss_pred HHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHH
Q 022641 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (294)
Q Consensus 228 ~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~ 261 (294)
.. ....+.+..+.+.+.+.|||==+...++...
T Consensus 233 ~~-~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~ 265 (849)
T COG3899 233 GC-TKLLPAPLLELIFEKTKGNPFFIEEFLKALY 265 (849)
T ss_pred CC-cccccchHHHHHHHHhcCCCccHHHHHHHHH
Confidence 43 2456778889999999998765555555443
No 311
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=98.25 E-value=4.7e-06 Score=64.38 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=36.1
Q ss_pred CCcEEEEEeCCCCCCH---HHHHHHHHHHHhhcCcceEEEEecCCcccchHhhcccc
Q 022641 154 PPYKIIILDEADSMTE---DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (294)
Q Consensus 154 ~~~~lliiDei~~l~~---~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~ 207 (294)
.+.++|||||+...-. -..+.+.++++..+....+|+|++... +++.....
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p---~~Lie~AD 167 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP---RELIEAAD 167 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC---HHHHHhCc
Confidence 5678999999865421 124567788888899999999997654 45555444
No 312
>PTZ00202 tuzin; Provisional
Probab=98.25 E-value=4.4e-05 Score=66.18 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=43.4
Q ss_pred cCCCcchhhcccHHHHHHHHHHHHcCC---CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 55 YRPKQVKDVAHQEEVVRVLTNTLETAN---CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 55 ~~~~~~~~~~g~~~~~~~l~~~l~~~~---~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..|....+++|++.....|...+.... .+.++|+|++|||||++++.+...+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 346678899999999999999886432 2358999999999999999999877
No 313
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=98.24 E-value=1.5e-05 Score=62.65 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=65.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCC
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei 164 (294)
++|.|+.|+|||+..+.|+...+.. . + ......+... .+... -++.+||+
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d-----~---~--~~~~~kd~~~----~l~~~----------------~iveldEl 104 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSD-----S---I--NDFDDKDFLE----QLQGK----------------WIVELDEL 104 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccC-----c---c--ccCCCcHHHH----HHHHh----------------HheeHHHH
Confidence 8999999999999999997664211 1 1 1111122221 11111 28999999
Q ss_pred CCCCHHHHHHHHHHHH---------------hhcCcceEEEEecCCcccch-HhhccccEEEecC
Q 022641 165 DSMTEDAQNALRRTME---------------TYSKVTRFFFICNYISRIIE-PLASRCAKFRFKP 213 (294)
Q Consensus 165 ~~l~~~~~~~L~~~l~---------------~~~~~~~ii~~~~~~~~~~~-~l~~r~~~i~~~~ 213 (294)
+.+.....+.|...+. ..+...++|.+||...-+.+ .--+|+..+.+..
T Consensus 105 ~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 105 DGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred hhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 9999888888888884 23355667888888765544 4556888777765
No 314
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.22 E-value=1.5e-05 Score=60.73 Aligned_cols=23 Identities=48% Similarity=0.845 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~ 107 (294)
++|+||||+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
No 315
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.21 E-value=8.9e-05 Score=61.16 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=91.3
Q ss_pred HHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCC
Q 022641 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (294)
Q Consensus 72 ~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (294)
.+.+.+...+ .|.+|+|.+|+||+++++..+.-. +..++.+......+...+++.++........
T Consensus 22 ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i~------~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~-------- 86 (268)
T PF12780_consen 22 RISRVLSQPR-GHALLVGVGGSGRQSLARLAAFIC------GYEVFQIEITKGYSIKDFKEDLKKALQKAGI-------- 86 (268)
T ss_dssp HHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHHT------TEEEE-TTTSTTTHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHHh------ccceEEEEeeCCcCHHHHHHHHHHHHHHHhc--------
Confidence 4444454433 479999999999999999877665 6677777766665666666555554433221
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHH------------------------------------------HhhcCcceEE
Q 022641 152 PCPPYKIIILDEADSMTEDAQNALRRTM------------------------------------------ETYSKVTRFF 189 (294)
Q Consensus 152 ~~~~~~lliiDei~~l~~~~~~~L~~~l------------------------------------------~~~~~~~~ii 189 (294)
.+++.+++++|-+-......+.+-.++ +....+..++
T Consensus 87 -~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~nLHiv 165 (268)
T PF12780_consen 87 -KGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRKNLHIV 165 (268)
T ss_dssp -S-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCCCEEEE
T ss_pred -cCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHhheeEE
Confidence 133458888887655332211111111 1223455677
Q ss_pred EEecCCcc-------cchHhhccccEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 022641 190 FICNYISR-------IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244 (294)
Q Consensus 190 ~~~~~~~~-------~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~ 244 (294)
++.++... ..|++.++|.+.-+.+.+.+-+..+-.+.++.... ++++.-+.+++
T Consensus 166 l~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~~~~-~~~~~~~~l~~ 226 (268)
T PF12780_consen 166 LCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSDIEL-LSEELKKSLAE 226 (268)
T ss_dssp EEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCHHHT-SS--HHHHHHH
T ss_pred EEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHhhcc-cchhHHHHHHH
Confidence 66654322 35778888999999999999998888776654321 34444444443
No 316
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.19 E-value=4.4e-06 Score=59.71 Aligned_cols=53 Identities=26% Similarity=0.364 Sum_probs=37.2
Q ss_pred hhhcccHHHHHHHHHHH----HcCCCC-c--EEEECCCCCCHHHHHHHHHHHhcCCCccC
Q 022641 61 KDVAHQEEVVRVLTNTL----ETANCP-H--MLFYGPPGTGKTTTALAIAHQLFGPELYK 113 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l----~~~~~~-~--ill~Gp~G~GKT~la~~la~~~~~~~~~~ 113 (294)
..+.||.-+.+.+.+++ .+..++ . +.|.|++|||||.+++.||+.++......
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S 84 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKS 84 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCC
Confidence 46778876666555554 333221 1 66899999999999999999987544333
No 317
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.18 E-value=9.2e-06 Score=76.65 Aligned_cols=113 Identities=14% Similarity=0.185 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH-------HHHHHh
Q 022641 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK-------IKTFAA 139 (294)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 139 (294)
+.....+...+... +.++|+|+||||||++++++...+... +..+..+. +.......+... +..+..
T Consensus 355 ~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~A-pTg~Aa~~L~~~~g~~a~Ti~~~~~ 428 (744)
T TIGR02768 355 EEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAA-LSGKAAEGLQAESGIESRTLASLEY 428 (744)
T ss_pred HHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEe-CcHHHHHHHHhccCCceeeHHHHHh
Confidence 44445554444332 368999999999999999998776322 23333332 221111111110 011100
Q ss_pred hhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEe
Q 022641 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (294)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~ 192 (294)
. .........+.++|||||+.+++......|+..... ....+|+++
T Consensus 429 ~-----~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 429 A-----WANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred h-----hccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 0 011112234668999999999998887777765543 355677776
No 318
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=4e-05 Score=66.40 Aligned_cols=149 Identities=12% Similarity=0.146 Sum_probs=72.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCC-ccCCcceeecCCCCc--chhHHHHHHHHHHhhhcccCcc-----CCCCCCC
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDDR--GINVVRTKIKTFAAVAVGSGQR-----RGGYPCP 154 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 154 (294)
..++|+||+|+||||++..+|..+.... ..+..+..+.....+ ....+..... ....+...... .......
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~-~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGD-IMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhh-cCCcceEeeCcHHHHHHHHHHhC
Confidence 4599999999999999999998773211 112233333332221 1111211111 11111111000 0001124
Q ss_pred CcEEEEEeCCCCCCHH--HHHHHHHHHHhhcC--cceEEEEecCCcccchHhhccc-----cEEEecCCCHHHHHHHHHH
Q 022641 155 PYKIIILDEADSMTED--AQNALRRTMETYSK--VTRFFFICNYISRIIEPLASRC-----AKFRFKPLSEEVMSSRVLH 225 (294)
Q Consensus 155 ~~~lliiDei~~l~~~--~~~~L~~~l~~~~~--~~~ii~~~~~~~~~~~~l~~r~-----~~i~~~~~~~~~~~~~l~~ 225 (294)
+.++|+||.+++.+.+ ....+..+++.... ...+++.++....-...+.+++ .-+-|..++.......+-.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l~ 333 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLIS 333 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchHHHH
Confidence 5789999999998643 34566666665432 2334444433322222333333 2455666665544444444
Q ss_pred HHHHhCC
Q 022641 226 ICNEEGL 232 (294)
Q Consensus 226 ~~~~~~~ 232 (294)
++...++
T Consensus 334 ~~~~~~~ 340 (388)
T PRK12723 334 LIYEMRK 340 (388)
T ss_pred HHHHHCC
Confidence 4444433
No 319
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.17 E-value=3e-06 Score=75.70 Aligned_cols=94 Identities=13% Similarity=0.217 Sum_probs=60.0
Q ss_pred cCCCCCcccCCCCcccCCCCchHHHHhhccccccCCc-----------hhh--hhcCCCcchhhcccHHHHHHHHHHHH-
Q 022641 13 KNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQ-----------PWV--EKYRPKQVKDVAHQEEVVRVLTNTLE- 78 (294)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~~~g~~~~~~~l~~~l~- 78 (294)
....+++.+++....+.|......-+|-+.-+..... .+. ..-+...|+++.|.++.+..+...+.
T Consensus 15 ~~~~~sl~eyL~~vk~~p~~~~~A~~R~~~~Ig~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yGlee~ieriv~~l~~ 94 (644)
T PRK15455 15 KEEEFSLQEYLELCKQDPSAYANAAERLLMAIGEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYGMEEAIEQIVSYFRH 94 (644)
T ss_pred hcccccHHHHHHHHhcChHHHhhHHHHHHHHhCCceeeecCccchhhhhhcccccccccchhcccCcHHHHHHHHHHHHH
Confidence 4555677777666555555444444444332211110 011 01223356789999999998888772
Q ss_pred -----cCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 79 -----TANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 79 -----~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
....+.++|+||||+|||+|++.|++.+
T Consensus 95 Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 95 AAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred HHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 2344569999999999999999999987
No 320
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.9e-05 Score=74.21 Aligned_cols=194 Identities=18% Similarity=0.161 Sum_probs=120.9
Q ss_pred chhhccc-HHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCC----ccCCcceeecCCC----CcchhHH
Q 022641 60 VKDVAHQ-EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD----DRGINVV 130 (294)
Q Consensus 60 ~~~~~g~-~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~----~~~~~~~~~~~~~----~~~~~~~ 130 (294)
..-++|+ +..++.+.+.+......|-+|+|.||+|||.++..+++....-+ .....++.++... ......+
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 3456677 78888888888888878999999999999999999999874221 1223334343321 1223344
Q ss_pred HHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhhcCcceEEEEecCC-----cc
Q 022641 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICNYI-----SR 197 (294)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~--------~~~~~L~~~l~~~~~~~~ii~~~~~~-----~~ 197 (294)
...+..+...... .+..-||+|||++.+.. ...+.|...+... ...+|.+|... ..
T Consensus 265 E~rlk~l~k~v~~---------~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg--~l~~IGatT~e~Y~k~ie 333 (898)
T KOG1051|consen 265 EERLKELLKEVES---------GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARG--GLWCIGATTLETYRKCIE 333 (898)
T ss_pred HHHHHHHHHHHhc---------CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcC--CeEEEecccHHHHHHHHh
Confidence 4455554433221 12345999999998732 2345555555432 26677666422 12
Q ss_pred cchHhhccccEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHhhc------cCcHHHHHHHHHHHHHHh
Q 022641 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSIS------QGDLRRAITYLQGAARLF 264 (294)
Q Consensus 198 ~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~l~~~~------~G~~r~~~~~l~~~~~~~ 264 (294)
-++++-+||..+.++-|+.++...++...... +|..+++..+...+..+ ..-+..++.+.+.++...
T Consensus 334 kdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~ 410 (898)
T KOG1051|consen 334 KDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALV 410 (898)
T ss_pred hCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHH
Confidence 46889999999989889888777677665554 45556555544433322 334566666666665443
No 321
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.15 E-value=2e-06 Score=62.27 Aligned_cols=22 Identities=45% Similarity=0.881 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
++|+||||+||||+++.|++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 322
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=98.15 E-value=2.2e-05 Score=59.81 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCCCCCH---HHHHHHHHHHHhhcCcceEEEEecCCcccchHhhcccc
Q 022641 154 PPYKIIILDEADSMTE---DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (294)
Q Consensus 154 ~~~~lliiDei~~l~~---~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~ 207 (294)
...++|||||+...-. -..+.+.++++..+....+|+|++... +.+.....
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p---~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP---QDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC---HHHHHhCc
Confidence 4678999999863211 123457788888999999999997654 55555554
No 323
>PRK14532 adenylate kinase; Provisional
Probab=98.15 E-value=0.00012 Score=57.50 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++|.||||+||||+++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 324
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.14 E-value=8e-06 Score=64.19 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 156 ~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
..+||+||++.+++.....+ +-.....+.+|++++.
T Consensus 120 ~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDP 155 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE--
T ss_pred ceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCc
Confidence 47999999999987765544 4445567788888754
No 325
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.13 E-value=1.2e-05 Score=69.53 Aligned_cols=23 Identities=48% Similarity=0.676 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++.|.||||||.+|..++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 326
>PRK08118 topology modulation protein; Reviewed
Probab=98.13 E-value=3.8e-05 Score=58.94 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+|+||||+||||+|+.|++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 327
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.11 E-value=3e-06 Score=61.68 Aligned_cols=33 Identities=36% Similarity=0.588 Sum_probs=27.4
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (294)
..|||+++|.|||||||++..+|... +..++.+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~------~~~~i~i 38 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT------GLEYIEI 38 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh------CCceEeh
Confidence 45799999999999999999999876 5555544
No 328
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.10 E-value=4.2e-05 Score=67.41 Aligned_cols=147 Identities=20% Similarity=0.180 Sum_probs=72.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc-CCCccCCcceeecCCCCcchhHHHHHHHHHHh---hhcccCccCC-----CCCC
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAA---VAVGSGQRRG-----GYPC 153 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~ 153 (294)
..++|+||+|+||||++..|+..+. ... +..+..++....+... . ..+..+.. .+........ ....
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a-~-eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~ 297 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGA-V-EQLKTYAKIMGIPVEVVYDPKELAKALEQL 297 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHH-H-HHHHHHHHHhCCceEccCCHHhHHHHHHHh
Confidence 3589999999999999999988773 121 2233334433322111 0 11111111 1100000000 0012
Q ss_pred CCcEEEEEeCCCCCC--HHHHHHHHHHHHh-h-cCcceEEEEecCCcccchHhhcccc-----EEEecCCCHHHHHHHHH
Q 022641 154 PPYKIIILDEADSMT--EDAQNALRRTMET-Y-SKVTRFFFICNYISRIIEPLASRCA-----KFRFKPLSEEVMSSRVL 224 (294)
Q Consensus 154 ~~~~lliiDei~~l~--~~~~~~L~~~l~~-~-~~~~~ii~~~~~~~~~~~~l~~r~~-----~i~~~~~~~~~~~~~l~ 224 (294)
...++|+||..++.+ ....+.|..+++. . +....+++.++.......++..+|. .+-+..++......-+.
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDet~~~G~i~ 377 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDETSSLGSIL 377 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEecccccccccHHH
Confidence 346899999998764 4456667777762 1 2234455555544333344444432 34455555444333344
Q ss_pred HHHHHhCCC
Q 022641 225 HICNEEGLN 233 (294)
Q Consensus 225 ~~~~~~~~~ 233 (294)
.++...+++
T Consensus 378 ~~~~~~~lP 386 (424)
T PRK05703 378 SLLIESGLP 386 (424)
T ss_pred HHHHHHCCC
Confidence 444444443
No 329
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.10 E-value=3.8e-05 Score=63.41 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=25.0
Q ss_pred HcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 78 ETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 78 ~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+...+++|.||+|+||||+++.++..+
T Consensus 107 ~~~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 107 RNNRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred hCCCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 34444689999999999999999999887
No 330
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.09 E-value=8.6e-06 Score=60.79 Aligned_cols=22 Identities=45% Similarity=0.912 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
++++||||+||||+++.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999887
No 331
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.09 E-value=6.8e-05 Score=64.24 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=71.8
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHhc-CCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCC-----CCCCCC
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-----GYPCPP 155 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 155 (294)
...+.|+||.|+||||++.-||..+. ........++.++.-..-....+. .....+..+......+. ......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk-~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLK-TYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHH-HHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 45699999999999999999988874 222223333333322221111111 11111222111111100 011234
Q ss_pred cEEEEEeCCCCCC--HHHHHHHHHHHHhh-cCcceEEEEecCCcccchHhhcccc-----EEEecCCCHH
Q 022641 156 YKIIILDEADSMT--EDAQNALRRTMETY-SKVTRFFFICNYISRIIEPLASRCA-----KFRFKPLSEE 217 (294)
Q Consensus 156 ~~lliiDei~~l~--~~~~~~L~~~l~~~-~~~~~ii~~~~~~~~~~~~l~~r~~-----~i~~~~~~~~ 217 (294)
.++|++|=+++-. ......|..+++.. +....+++.++....-..++..+|. -+-|..+++.
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEccccc
Confidence 5799999998753 45566677776654 3345566666666555666666554 3444455543
No 332
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.08 E-value=2e-05 Score=58.07 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
++++.||+|+|||+++..++..+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 689999999999999999888874
No 333
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.08 E-value=1.8e-05 Score=61.50 Aligned_cols=43 Identities=35% Similarity=0.505 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHHHcC-CCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 65 HQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 65 g~~~~~~~l~~~l~~~-~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.|..++..+.+.+... ..++++|.+|+|+|||.++..++.++.
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA 50 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc
Confidence 4677778888888776 556899999999999999998777773
No 334
>PRK14974 cell division protein FtsY; Provisional
Probab=98.07 E-value=3.6e-05 Score=65.49 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+||+|+||||++..++..+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998773
No 335
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.07 E-value=1.4e-05 Score=65.25 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=24.8
Q ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhcC
Q 022641 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (294)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (294)
+.+..++|+||+|+|||++++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 44557999999999999999999988743
No 336
>PRK07261 topology modulation protein; Provisional
Probab=98.06 E-value=2.6e-05 Score=60.16 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.2
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|+||+||||+++.++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 337
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=2.2e-05 Score=67.43 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=22.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+||+|+||||++..|+..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999999886
No 338
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.05 E-value=7.6e-05 Score=58.24 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
++|+||||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999987
No 339
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=3.3e-05 Score=60.73 Aligned_cols=34 Identities=38% Similarity=0.464 Sum_probs=27.4
Q ss_pred HHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 73 l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+...+......|.++.|||||||||+++-+++-+
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHh
Confidence 3444445555679999999999999999999987
No 340
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.02 E-value=4.1e-05 Score=73.66 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHH-------HHHHHHHh
Q 022641 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR-------TKIKTFAA 139 (294)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 139 (294)
+.....+..++.... .++|+|++||||||+++.+...+... +..++.+.++. .....+. ..+..+..
T Consensus 349 ~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~---G~~V~~~ApTG-kAA~~L~e~tGi~a~TI~sll~ 422 (988)
T PRK13889 349 GEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAA---GYEVRGAALSG-IAAENLEGGSGIASRTIASLEH 422 (988)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEecCcH-HHHHHHhhccCcchhhHHHHHh
Confidence 344444444443322 57899999999999998876655211 23333332211 1111111 01111110
Q ss_pred hhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEec
Q 022641 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
. ...+.......++|||||+.+++......|++.... ....+|+++.
T Consensus 423 ---~--~~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD 469 (988)
T PRK13889 423 ---G--WGQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGD 469 (988)
T ss_pred ---h--hcccccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECC
Confidence 0 001112234567999999999998888888776654 4566777774
No 341
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.02 E-value=8.6e-06 Score=64.08 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=68.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCC-----------CCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-----------GYP 152 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 152 (294)
.++|+||+|+||||++--+|..+... .....++..+....-..+.++..... ...+........ ...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~-l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEI-LGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHH-HTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHH-hccccchhhcchhhHHHHHHHHHHHh
Confidence 48999999999999999999988533 22333333332222222223222221 111110000000 001
Q ss_pred CCCcEEEEEeCCCCCCH--HHHHHHHHHHHhhcC-cceEEEEecCCcccchHhhc---cc--cEEEecCCCHHHHHHHHH
Q 022641 153 CPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYISRIIEPLAS---RC--AKFRFKPLSEEVMSSRVL 224 (294)
Q Consensus 153 ~~~~~lliiDei~~l~~--~~~~~L~~~l~~~~~-~~~ii~~~~~~~~~~~~l~~---r~--~~i~~~~~~~~~~~~~l~ 224 (294)
..+.++|+||-.++.+. .....|.++++.... ...+++.++........+.. .+ .-+-+..+++.....-+-
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l 160 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALL 160 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccce
Confidence 12357999999988763 445666666665433 34444444433322222222 22 244555665543333333
Q ss_pred HHHHHhC
Q 022641 225 HICNEEG 231 (294)
Q Consensus 225 ~~~~~~~ 231 (294)
..+...+
T Consensus 161 ~~~~~~~ 167 (196)
T PF00448_consen 161 SLAYESG 167 (196)
T ss_dssp HHHHHHT
T ss_pred eHHHHhC
Confidence 3333333
No 342
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=98.00 E-value=5.3e-05 Score=73.36 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=60.6
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHH----HHHhhhcccCccCCCCCCCCcE
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK----TFAAVAVGSGQRRGGYPCPPYK 157 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
.+..+|.|++||||||+++.+...+... +..++.+.++ ......+.+... .+....... ..+........
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~~---G~~V~g~ApT-gkAA~~L~e~~Gi~a~TIas~ll~~--~~~~~~l~~~~ 470 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEAA---GYRVVGGALA-GKAAEGLEKEAGIQSRTLSSWELRW--NQGRDQLDNKT 470 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEcCc-HHHHHHHHHhhCCCeeeHHHHHhhh--ccCccCCCCCc
Confidence 3468999999999999999998765221 3344433222 111122211100 000000000 01112344567
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEec
Q 022641 158 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 158 lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
+|||||+.+++......|++.... ....+|+++.
T Consensus 471 vlVIDEAsMv~~~~m~~Ll~~~~~--~garvVLVGD 504 (1102)
T PRK13826 471 VFVLDEAGMVASRQMALFVEAVTR--AGAKLVLVGD 504 (1102)
T ss_pred EEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 999999999999988888887764 4566777774
No 343
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=6.5e-05 Score=66.98 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=21.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|+||+|+||||++..|+..+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 459999999999999999999876
No 344
>PRK14528 adenylate kinase; Provisional
Probab=97.98 E-value=0.00028 Score=55.19 Aligned_cols=24 Identities=42% Similarity=0.855 Sum_probs=22.0
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++++.||||+||||+++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999887
No 345
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.97 E-value=8.4e-05 Score=60.82 Aligned_cols=160 Identities=21% Similarity=0.186 Sum_probs=94.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchh----------------HHHHHHHHHHhhhcccCcc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN----------------VVRTKIKTFAAVAVGSGQR 147 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 147 (294)
...++|-+|.|||+.++.++... ...+....+...+.. .+...+.......
T Consensus 96 l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~~~~d~~~~~~~~l------ 162 (297)
T COG2842 96 LVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIICAAAFGATDGTINDLTERLMIRL------ 162 (297)
T ss_pred eEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH------
Confidence 58999999999999999998764 222223222221111 1111111111111
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecCC--------cccchHhhcccc---EEEecCCCH
Q 022641 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRIIEPLASRCA---KFRFKPLSE 216 (294)
Q Consensus 148 ~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~--------~~~~~~l~~r~~---~i~~~~~~~ 216 (294)
....++|++||++.|+...++.|....++..-. +++++++. ....-.+.+|.. .+...-++.
T Consensus 163 -----~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~--~vLvG~prL~~~l~~~~~~~~rl~srv~v~~~~~~~~~d~ 235 (297)
T COG2842 163 -----RDTVRLIIVDEADRLPYRALEELRRIHDKTGIG--VVLVGMPRLFKVLRRPEDELSRLYSRVRVGKLLGEKFPDA 235 (297)
T ss_pred -----ccCcceeeeehhhccChHHHHHHHHHHHhhCce--EEEecChHHHhccccchHHHHHHHHHhhhHhhhhhhhhhh
Confidence 234569999999999999999999998874433 44444332 111222333322 122122332
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCC
Q 022641 217 EVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (294)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~ 267 (294)
.+...+....+ ...++..+..+...++|++|.+-..+..+..++...
T Consensus 236 d~~~~~~~~~l----~~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~a~~~ 282 (297)
T COG2842 236 DELAEIAALVL----PTEDELVLMQVIKETEGNIRRLDKILAGAVGTARSN 282 (297)
T ss_pred HHHHHHHHhhC----ccchHHHHHHHHHhcchhHhHHHHHHhhhhhhhhhc
Confidence 44444433222 225777888888889999999999888887776433
No 346
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.96 E-value=0.00024 Score=54.37 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhhcCcceEEEEecCCcccchHhhccccEEE
Q 022641 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210 (294)
Q Consensus 154 ~~~~lliiDei-~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l~~r~~~i~ 210 (294)
.++.+|+=||- +.+++.....+++++++.......++.+.+...+...+..|+..++
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~ 211 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALE 211 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEe
Confidence 56789999996 5788988888999998877655544444454555566666665544
No 347
>PF13245 AAA_19: Part of AAA domain
Probab=97.94 E-value=1.6e-05 Score=52.21 Aligned_cols=25 Identities=52% Similarity=0.792 Sum_probs=18.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
+.+++.||||+|||+++..+...+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3477799999999977666666653
No 348
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.92 E-value=2.6e-05 Score=67.15 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.3
Q ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 80 ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
+.++.++|+||+|+|||++++.+++...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4555699999999999999999999874
No 349
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.92 E-value=0.00017 Score=55.20 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=56.6
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhh--hcccCccC----CCCCCCC
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--AVGSGQRR----GGYPCPP 155 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~ 155 (294)
...+.|.||+|+|||||++.++...... . .-+.++..+...... .......... ..+.+.+. ......+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~-G~v~~~g~~~~~~~~-~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPD---S-GEILVDGKEVSFASP-RDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---C-eEEEECCEECCcCCH-HHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 3469999999999999999998765211 1 112222211110000 0000000000 00000000 0011234
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHhhc-CcceEEEEecCCc
Q 022641 156 YKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (294)
Q Consensus 156 ~~lliiDei~-~l~~~~~~~L~~~l~~~~-~~~~ii~~~~~~~ 196 (294)
+.++++||.- .++......+.+.+.... ....+|+++.+..
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5699999965 678888888888887653 3455677776543
No 350
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.91 E-value=0.00011 Score=56.85 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=22.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
-++|+|+||+||||+++.+++.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 489999999999999999999984
No 351
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.91 E-value=0.001 Score=49.84 Aligned_cols=124 Identities=14% Similarity=0.165 Sum_probs=68.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc---hhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEE
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG---INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llii 161 (294)
++=++.+||||||++.+|.+.+ +. +-.+...+..+ ...+...+..+.. ....++|.
T Consensus 2 lvPIAtiGCGKTTva~aL~~LF------g~-wgHvQnDnI~~k~~~~f~~~~l~~L~~--------------~~~~vVia 60 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLF------GE-WGHVQNDNITGKRKPKFIKAVLELLAK--------------DTHPVVIA 60 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHc------CC-CCccccCCCCCCCHHHHHHHHHHHHhh--------------CCCCEEEE
Confidence 4457899999999999999876 21 11122222222 2223233333211 12349999
Q ss_pred eCCCCCCHHHHHHHHHHHHhhcC-------cceEEEEecCCccc--------chHhhcccc---EEEecCCCHHHHHHHH
Q 022641 162 DEADSMTEDAQNALRRTMETYSK-------VTRFFFICNYISRI--------IEPLASRCA---KFRFKPLSEEVMSSRV 223 (294)
Q Consensus 162 Dei~~l~~~~~~~L~~~l~~~~~-------~~~ii~~~~~~~~~--------~~~l~~r~~---~i~~~~~~~~~~~~~l 223 (294)
|-=++. ......|+..++.... ...+|...=..... .+++..|-. .|............++
T Consensus 61 DRNNh~-~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im 139 (168)
T PF08303_consen 61 DRNNHQ-KRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIM 139 (168)
T ss_pred eCCCch-HHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHH
Confidence 987666 4456677777766444 55555544111111 123334432 5666666667777777
Q ss_pred HHHHHHh
Q 022641 224 LHICNEE 230 (294)
Q Consensus 224 ~~~~~~~ 230 (294)
...+++.
T Consensus 140 ~gFi~rf 146 (168)
T PF08303_consen 140 EGFIKRF 146 (168)
T ss_pred HHHHHhc
Confidence 7766553
No 352
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.91 E-value=1.6e-05 Score=63.35 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=19.6
Q ss_pred CcEEEECCCCCCHHHHHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~ 104 (294)
..++|+|+||+|||++|+.++.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 3499999999999999999864
No 353
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.89 E-value=0.00017 Score=53.87 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=54.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC------CCcchhHHHHHHHHHHhhhcccCccCCCCCCCCc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
..+.|.||+|+||||+++.++....... .. +.++.. ...+....+. +.-... ...++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~---G~-i~~~~~~~i~~~~~lS~G~~~r-v~lara------------l~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDE---GI-VTWGSTVKIGYFEQLSGGEKMR-LALAKL------------LLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCc---eE-EEECCeEEEEEEccCCHHHHHH-HHHHHH------------HhcCC
Confidence 4689999999999999999987652111 11 111110 0011111111 111111 11234
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 157 KIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 157 ~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
.++++||.. .++......+.+.+... ...+++++....
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~ 128 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRY 128 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHH
Confidence 599999965 67888888888888765 245677776543
No 354
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.88 E-value=0.00019 Score=56.45 Aligned_cols=22 Identities=45% Similarity=0.847 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
|+|+||||+||||+++.|+..+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999987
No 355
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.88 E-value=1.4e-05 Score=68.44 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=24.8
Q ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhcC
Q 022641 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (294)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~~ 108 (294)
++.+..+|+||+|+|||+|++.+++....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 45556999999999999999999998743
No 356
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.87 E-value=7.1e-05 Score=59.00 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=30.9
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC-cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~ 196 (294)
.++.++++||.. .++......+.+.+..... ...+|+++.+..
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 456799999965 5778888888888876543 455777776654
No 357
>PRK00625 shikimate kinase; Provisional
Probab=97.86 E-value=1.7e-05 Score=61.02 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=26.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
+|+|+|.||+||||+++.+++.+ +.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l------~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL------SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCEEEhh
Confidence 58999999999999999999998 56665554
No 358
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.86 E-value=9e-05 Score=65.31 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..++|+|++|+||||++..+|..+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3489999999999999999998874
No 359
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.85 E-value=0.00023 Score=55.05 Aligned_cols=102 Identities=18% Similarity=0.144 Sum_probs=54.9
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhcCCCc---c-CCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCc
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPEL---Y-KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (294)
....+.|.||.|+|||||++.++..+..... . +..+..+......+...- ..+.-... ...++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~-qrv~lara------------l~~~p 90 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGEL-QRVAIAAA------------LLRNA 90 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHH-HHHHHHHH------------HhcCC
Confidence 3446999999999999999999876521110 0 000000100000111111 11111111 11234
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHhhcC--cceEEEEecCC
Q 022641 157 KIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYI 195 (294)
Q Consensus 157 ~lliiDei~-~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~ 195 (294)
.++++||.- .++......+.+.+..... ...+++++.+.
T Consensus 91 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 91 TFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 699999975 6777777777777765432 25577777654
No 360
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.85 E-value=0.00094 Score=49.86 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=25.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
++|+|++|+|||++++.++..+ +.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~------~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL------GLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh------CCceeccc
Confidence 7899999999999999999998 55555443
No 361
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.85 E-value=0.00019 Score=56.00 Aligned_cols=143 Identities=24% Similarity=0.275 Sum_probs=65.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEeCC
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiDei 164 (294)
++|+||+|||||.++-.+|+.. +.+++..+.-.- +.....+.+........+-+. +++||-
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~------g~pvI~~Driq~------------y~~l~v~Sgrp~~~el~~~~R-iyL~~r 64 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKT------GAPVISLDRIQC------------YPELSVGSGRPTPSELKGTRR-IYLDDR 64 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--------EEEEE-SGGG-------------GGGTTTTT---SGGGTT-EE-EES---
T ss_pred EEEECCCCCChhHHHHHHHHHh------CCCEEEecceec------------ccccccccCCCCHHHHcccce-eeeccc
Confidence 6899999999999999999999 667665542211 111111111100001111223 788875
Q ss_pred CC----CC-HHHHHHHHHHHHhhcCcceEEEEecCCcccchHh----h-cccc--EEEecCCCHHHHHHHHHHHHHHh-C
Q 022641 165 DS----MT-EDAQNALRRTMETYSKVTRFFFICNYISRIIEPL----A-SRCA--KFRFKPLSEEVMSSRVLHICNEE-G 231 (294)
Q Consensus 165 ~~----l~-~~~~~~L~~~l~~~~~~~~ii~~~~~~~~~~~~l----~-~r~~--~i~~~~~~~~~~~~~l~~~~~~~-~ 231 (294)
.- ++ ....+.|...+.......-+|+-+...+.+..-. . ..+. +..+.-++.+.......+..++. .
T Consensus 65 ~l~~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~ 144 (233)
T PF01745_consen 65 PLSDGIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR 144 (233)
T ss_dssp -GGG-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS
T ss_pred cccCCCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC
Confidence 32 23 3355667788887777777777775544332111 1 1222 45555556555555444444332 1
Q ss_pred C-CCCHHHHHHHHhhc
Q 022641 232 L-NLDAEALSTLSSIS 246 (294)
Q Consensus 232 ~-~~~~~~l~~l~~~~ 246 (294)
. .-.+..+++++...
T Consensus 145 p~~~~~Sll~EL~~lW 160 (233)
T PF01745_consen 145 PDSSGPSLLEELVALW 160 (233)
T ss_dssp --SSS--HHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHH
Confidence 1 22356777777764
No 362
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.85 E-value=0.00013 Score=63.57 Aligned_cols=171 Identities=12% Similarity=0.174 Sum_probs=89.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCCCCCCCcEEEEEe
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD 162 (294)
-|++=.||.|||||++=+.+.. ..+.++++..... .++........ -..+..++|++|
T Consensus 209 ~NliELgPrGTGKS~vy~eiSp----------~~~liSGG~~T~A----~LFyn~~~~~~--------GlV~~~D~VafD 266 (457)
T PF13337_consen 209 YNLIELGPRGTGKSYVYKEISP----------YGILISGGQVTVA----KLFYNMSTGQI--------GLVGRWDVVAFD 266 (457)
T ss_pred cceEEEcCCCCCceeehhhcCc----------ccEEEECCCcchH----HheeeccCCcc--------eeeeeccEEEEE
Confidence 4699999999999999666632 2333443332111 11111111100 012345799999
Q ss_pred CCCCCC---HHHHHHHHHHHHhhc---------CcceEEEEecCCcc-------------c-----chHhhccccE----
Q 022641 163 EADSMT---EDAQNALRRTMETYS---------KVTRFFFICNYISR-------------I-----IEPLASRCAK---- 208 (294)
Q Consensus 163 ei~~l~---~~~~~~L~~~l~~~~---------~~~~ii~~~~~~~~-------------~-----~~~l~~r~~~---- 208 (294)
|+..+. ++..+.|...|+... ....+++++|-... + +.++++|++.
T Consensus 267 Ev~~i~f~d~d~i~imK~YMesG~fsRG~~~i~a~as~vf~GNi~~~v~~~~~~~~lf~~lP~~~~DsAflDRiH~~iPG 346 (457)
T PF13337_consen 267 EVAGIKFKDKDEIQIMKDYMESGSFSRGKEEINADASMVFVGNINQSVENMLKTSHLFEPLPEEMRDSAFLDRIHGYIPG 346 (457)
T ss_pred eccCcccCChHHHHHHHHHHhccceeecccccccceeEEEEcCcCCcchhccccchhhhhcCHHHHHHHHHhHhheeccC
Confidence 999885 556677888887433 45668888875422 1 3567778772
Q ss_pred EEecCCCH-----------HHHHHHHHHHHHHhCCCCCHHHHHHHHhhc-cCcHHHHHHHHHHHHHHh-----CCCCChh
Q 022641 209 FRFKPLSE-----------EVMSSRVLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-----GSSITSK 271 (294)
Q Consensus 209 i~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~-~G~~r~~~~~l~~~~~~~-----~~~it~~ 271 (294)
.+++.... +-..++++.+.+.. + .+.++...+.. +-+.|....+-..++.+. ...+|.+
T Consensus 347 WeiPk~~~e~~t~~~gl~~Dy~aE~l~~LR~~~---~-~~~~~~~~~lg~~~~~RD~~AV~kt~SgllKLL~P~~~~~~e 422 (457)
T PF13337_consen 347 WEIPKIRPEMFTNGYGLIVDYFAEILHELRKQS---Y-SDAVDKYFKLGSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKE 422 (457)
T ss_pred ccccccCHHHccCCceeeHHHHHHHHHHHHHHH---H-HHHHHhhEeeCCCcchhhHHHHHHHHHHHHHhhCCCCCCCHH
Confidence 24444433 33444444433211 1 12233333332 123333333333332222 5678888
Q ss_pred hhhhhccc
Q 022641 272 DLISVSGY 279 (294)
Q Consensus 272 ~v~~~~~~ 279 (294)
+++.++..
T Consensus 423 e~~~~l~~ 430 (457)
T PF13337_consen 423 ELEECLRP 430 (457)
T ss_pred HHHHHHHH
Confidence 88777654
No 363
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.84 E-value=2.3e-05 Score=60.61 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=23.1
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+..++|+|+||+|||++++.+++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999998
No 364
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.84 E-value=0.00025 Score=55.05 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=32.7
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCcc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~ 197 (294)
.++.++++||.- .++......+.+.+........+|+++.+...
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 456799999965 67888888888888766555667777766543
No 365
>PRK06547 hypothetical protein; Provisional
Probab=97.83 E-value=3.8e-05 Score=59.09 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=25.5
Q ss_pred HHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 75 ~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.......++|.|++|+||||+++.+++.+
T Consensus 8 ~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 8 ARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444444458888999999999999999986
No 366
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=0.00032 Score=54.07 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCcc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~~ 197 (294)
.+++++++||-- .++......+.+++........+++++.+...
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 456799999964 67888888888888776555667777766543
No 367
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.83 E-value=6.3e-05 Score=63.89 Aligned_cols=131 Identities=22% Similarity=0.309 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee-cCCCCcchhHHHHHHHHHHhhhcccCcc
Q 022641 70 VRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL-NASDDRGINVVRTKIKTFAAVAVGSGQR 147 (294)
Q Consensus 70 ~~~l~~~l~~~~~~~-ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (294)
+..++.++..-...| ++|+|||.||||..+..|.+-+ +..++.. |..+..= ++.+
T Consensus 249 l~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl------~GkViSf~Ns~ShFW-------LqPL---------- 305 (432)
T PF00519_consen 249 LIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL------KGKVISFVNSKSHFW-------LQPL---------- 305 (432)
T ss_dssp HHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHH------TSEEE-GGGTTSCGG-------GGGG----------
T ss_pred HHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHh------CCEEEEecCCCCccc-------ccch----------
Confidence 356677776544444 9999999999999999999988 5555543 2221110 1111
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHH-HHHHHHHhhc-------------CcceEEEEecCCc---ccchHhhccccEEE
Q 022641 148 RGGYPCPPYKIIILDEADSMTEDAQN-ALRRTMETYS-------------KVTRFFFICNYIS---RIIEPLASRCAKFR 210 (294)
Q Consensus 148 ~~~~~~~~~~lliiDei~~l~~~~~~-~L~~~l~~~~-------------~~~~ii~~~~~~~---~~~~~l~~r~~~i~ 210 (294)
....+-+|||+-.-.-.-.+ .|+..++..+ .-..+++|||..- .-...|.+|...+.
T Consensus 306 ------~d~Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~ 379 (432)
T PF00519_consen 306 ------ADAKIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFE 379 (432)
T ss_dssp ------CT-SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE
T ss_pred ------hcCcEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEE
Confidence 11238899998543222222 2556665422 1123778887543 23456788988877
Q ss_pred ecCC-------------CHHHHHHHHHHHHHH
Q 022641 211 FKPL-------------SEEVMSSRVLHICNE 229 (294)
Q Consensus 211 ~~~~-------------~~~~~~~~l~~~~~~ 229 (294)
|+.+ +....+.++++...+
T Consensus 380 F~n~~P~d~~G~P~y~ltd~~WksFF~rlw~~ 411 (432)
T PF00519_consen 380 FPNPFPLDENGNPVYELTDANWKSFFRRLWSQ 411 (432)
T ss_dssp --S-S-BSTTSSBSS---HHHHHHHHHHHTCC
T ss_pred cCCccccCCCCCeeEEeccChHHHHHHHHHHh
Confidence 7532 346677777666643
No 368
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00031 Score=54.94 Aligned_cols=51 Identities=12% Similarity=0.237 Sum_probs=33.2
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCc-ceEEEEecCCcccchHhhcc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKV-TRFFFICNYISRIIEPLASR 205 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~-~~ii~~~~~~~~~~~~l~~r 205 (294)
.++.++++||.- .|+++.....+..+...... ..++++|.. ......+.+|
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHE-M~FAr~Vadr 205 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE-MGFAREVADR 205 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEech-hHHHHHhhhe
Confidence 467899999986 46888888888888765543 445566543 3333444444
No 369
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.83 E-value=0.00027 Score=60.33 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++++|++|+||||+++++....
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999999877
No 370
>PRK03839 putative kinase; Provisional
Probab=97.83 E-value=1.9e-05 Score=61.50 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 371
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.83 E-value=7.2e-05 Score=67.57 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=33.5
Q ss_pred CCCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCC
Q 022641 153 CPPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (294)
Q Consensus 153 ~~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~ 195 (294)
..+++++||||+- .++++....+++.+.+.-..+.+|-++..+
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRP 574 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccch
Confidence 3578899999985 578888999999998765666677777554
No 372
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.83 E-value=0.00024 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|+||+|||++|..++..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 48999999999999999999886
No 373
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00013 Score=62.70 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=68.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCc--chhHHHHHHHHHHhhhcccCccCC-------C-CC
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR--GINVVRTKIKTFAAVAVGSGQRRG-------G-YP 152 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~ 152 (294)
..++|+||+|+||||++..|+..+... +..+..+++...+ ....+...... ...+........ . ..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~---GkkVglI~aDt~RiaAvEQLk~yae~-lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKT-IGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEEecCCcchHHHHHHHHHhhh-cCCcEEecCCHHHHHHHHHHHHh
Confidence 458999999999999999999887422 2223333333222 22222211111 011100000000 0 00
Q ss_pred CCCcEEEEEeCCCCCC--HHHHHHHHHHHHhhcCcce-EEEEecCCcccchHhhcccc-----EEEecCCCHHHHHHHHH
Q 022641 153 CPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTR-FFFICNYISRIIEPLASRCA-----KFRFKPLSEEVMSSRVL 224 (294)
Q Consensus 153 ~~~~~lliiDei~~l~--~~~~~~L~~~l~~~~~~~~-ii~~~~~~~~~~~~l~~r~~-----~i~~~~~~~~~~~~~l~ 224 (294)
..+.++|+||-.++.. ......|...+........ +++.++....-...+..+|. -+-|..++.......+-
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLDET~k~G~iL 397 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELL 397 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcccCCCCccHHH
Confidence 1135799999998875 4456667777764333322 22222222211123333332 45555565544444444
Q ss_pred HHHHHhC
Q 022641 225 HICNEEG 231 (294)
Q Consensus 225 ~~~~~~~ 231 (294)
.++...+
T Consensus 398 ni~~~~~ 404 (436)
T PRK11889 398 KIPAVSS 404 (436)
T ss_pred HHHHHHC
Confidence 4444433
No 374
>PRK13947 shikimate kinase; Provisional
Probab=97.82 E-value=2.1e-05 Score=60.64 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=25.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (294)
+|+|+|+||+|||++++.+++.+ +.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l------g~~~id~ 32 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL------SFGFIDT 32 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh------CCCEEEC
Confidence 69999999999999999999998 5555543
No 375
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00028 Score=53.55 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=55.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc--hhHHHHHHHHHHhhhcccCccC----CCCCCCCc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--INVVRTKIKTFAAVAVGSGQRR----GGYPCPPY 156 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (294)
..+.|+||.|+||||+++.++..+... ..-+.++...... .......+... ...+.+.+. ......++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~----~G~i~~~~~~~~~~~~~~~~~~i~~~--~qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPT----SGEILIDGKDIAKLPLEELRRRIGYV--PQLSGGQRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC----ccEEEECCEEcccCCHHHHHhceEEE--eeCCHHHHHHHHHHHHHhcCC
Confidence 469999999999999999998765211 1111222211100 00000000000 000000000 00001234
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHhhcCc-ceEEEEecCCc
Q 022641 157 KIIILDEAD-SMTEDAQNALRRTMETYSKV-TRFFFICNYIS 196 (294)
Q Consensus 157 ~lliiDei~-~l~~~~~~~L~~~l~~~~~~-~~ii~~~~~~~ 196 (294)
.++++||.. .++......+.+.+...... ..+++++....
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 699999976 67777777888887765433 55677776544
No 376
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.81 E-value=0.00025 Score=55.19 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=31.4
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.++++||.- .++......+.+.+..... ...+|+++....
T Consensus 114 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 114 QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 467899999965 6788888888888876543 456777776544
No 377
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.81 E-value=2.3e-05 Score=59.38 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=27.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
++++|+|++|+||||+.+.+|+.+ +.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L------~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL------NLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc------CCCcccch
Confidence 479999999999999999999999 66666554
No 378
>PRK13808 adenylate kinase; Provisional
Probab=97.80 E-value=0.00068 Score=57.40 Aligned_cols=23 Identities=39% Similarity=0.803 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+|+||||+||||++..|+..+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 379
>PRK06762 hypothetical protein; Provisional
Probab=97.80 E-value=0.00041 Score=53.18 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+|+||+||||+|+.+++.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 380
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.80 E-value=0.00047 Score=53.29 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=29.9
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHhhc-CcceEEEEecCCc
Q 022641 156 YKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (294)
Q Consensus 156 ~~lliiDei~-~l~~~~~~~L~~~l~~~~-~~~~ii~~~~~~~ 196 (294)
+.++++||.- .++......+.+.+.... ....+|+++.+..
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6899999964 577887787887777643 3456777776654
No 381
>PRK02496 adk adenylate kinase; Provisional
Probab=97.79 E-value=0.00035 Score=54.57 Aligned_cols=23 Identities=48% Similarity=0.992 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||||+||||+++.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 382
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.79 E-value=2.3e-05 Score=58.91 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|.|||||||+++.|+ .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 58999999999999999999 66
No 383
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.78 E-value=0.00026 Score=55.38 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=18.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++.||+|+|||+.+..++-..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~ 48 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEA 48 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHH
Confidence 479999999999999554444443
No 384
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.78 E-value=0.00039 Score=54.99 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+||+|+||||++.+++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999988873
No 385
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.77 E-value=7.8e-05 Score=54.39 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=22.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|.|+.|+||||+++.+++.+.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999999983
No 386
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.76 E-value=0.00052 Score=53.10 Aligned_cols=23 Identities=48% Similarity=0.881 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.||||+||||+|+.|++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999996
No 387
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.76 E-value=0.00063 Score=52.56 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=30.9
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC-cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~ 196 (294)
.++.++++||.- .++......+.+.+..... ...+|+++.+..
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 456799999965 6788888888888876543 456777776654
No 388
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.76 E-value=3.4e-05 Score=62.47 Aligned_cols=37 Identities=41% Similarity=0.575 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 68 ~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.....+..++.... ..++.||||||||+++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 34445544444332 38999999999999888888776
No 389
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.75 E-value=0.00012 Score=56.07 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=58.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCc---c-C-CcceeecCCCCcchhHHHHHHHHHHhhhcccCccC----CCCCC
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPEL---Y-K-SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR----GGYPC 153 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 153 (294)
..+.|.||.|+||||+++.++..+..... . + ..+..+..........+.+.+........+.+.+. .....
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHH
Confidence 35999999999999999999987521110 0 0 01111111111111112222211000001111100 00112
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
.++.++++||.- .++......+.+.+.+. ...+|+++.+..
T Consensus 108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 456799999975 57888888888888775 355777776643
No 390
>PLN02674 adenylate kinase
Probab=97.75 E-value=0.00099 Score=54.08 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=23.0
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+++|.||||+||||.++.|++.+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999999987
No 391
>PRK13949 shikimate kinase; Provisional
Probab=97.75 E-value=3.2e-05 Score=59.48 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=22.0
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++|+|+||+||||+++.+++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999998
No 392
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.75 E-value=0.00083 Score=56.81 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|+||+||||+++.+++.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 47889999999999999999987
No 393
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.75 E-value=0.00037 Score=69.97 Aligned_cols=124 Identities=21% Similarity=0.223 Sum_probs=66.7
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcC-CCccCCcceeecCCCCcchhHHHH------HHHHHH
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRT------KIKTFA 138 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 138 (294)
.+.....+..++.... +.++|.|.+||||||+++.+...+.. ....+..++.+. +.......+.+ .+..+.
T Consensus 837 t~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glA-PTgkAa~~L~e~Gi~A~TIasfL 914 (1623)
T PRK14712 837 TSGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLG-PTHRAVGEMRSAGVDAQTLASFL 914 (1623)
T ss_pred CHHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEe-chHHHHHHHHHhCchHhhHHHHh
Confidence 3444555555565432 46999999999999998887665421 000122233332 21111111111 111111
Q ss_pred hhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
.... ...........+..++||||+.+++...+..|+..++. ....+|+++..
T Consensus 915 ~~~~-~~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD~ 967 (1623)
T PRK14712 915 HDTQ-LQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVASGDT 967 (1623)
T ss_pred cccc-chhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcch
Confidence 1100 00001111223467999999999999888888888764 34668888743
No 394
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=6.6e-05 Score=58.05 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=30.6
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCc-ceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKV-TRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~-~~ii~~~~~~~ 196 (294)
.++.++++||.. .++......+.+.+...... ..+|+++.+..
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 456799999965 57788888888888776433 55677776543
No 395
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.75 E-value=3.5e-05 Score=58.26 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++|+|+||+|||++++.++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 396
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.74 E-value=0.0007 Score=57.40 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=22.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++++||+|+||||+++++...+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccC
Confidence 489999999999999999998776
No 397
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.73 E-value=0.00058 Score=57.49 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 68 ~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.....|..++... .+++++||+|+||||+++++...+
T Consensus 120 ~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 120 AQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred HHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445566666543 489999999999999999999886
No 398
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.73 E-value=0.00032 Score=58.38 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=34.0
Q ss_pred cchhhcccHHHHHHHHHHHHcC--CCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 59 QVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~--~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
+++++.........+.+.+... ...+++++||+|+||||++.++...+.
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred cHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 4555554444444555554433 234799999999999999999998873
No 399
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.73 E-value=0.00024 Score=72.01 Aligned_cols=124 Identities=20% Similarity=0.210 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcC-CCccCCcceeecCCCCcchhHHHH------HHHHHH
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRT------KIKTFA 138 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 138 (294)
.+.....+..++... .+.++|.|.+||||||+++.+...+.. ....+..++.+.+ .......+.+ .+..+.
T Consensus 969 t~~Q~~Av~~il~s~-dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAP-TgrAAk~L~e~Gi~A~TI~s~L 1046 (1747)
T PRK13709 969 TSGQRAATRMILEST-DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGP-THRAVGEMRSAGVDAQTLASFL 1046 (1747)
T ss_pred CHHHHHHHHHHHhCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECC-cHHHHHHHHhcCcchhhHHHHh
Confidence 344455555555443 246999999999999999998877521 0111223333322 2111111111 111111
Q ss_pred hhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEecC
Q 022641 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (294)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~~ 194 (294)
.... ..............++||||+.+++......|++.+.. ....+|+++..
T Consensus 1047 ~~~~-~~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~--~garvVLVGD~ 1099 (1747)
T PRK13709 1047 HDTQ-LQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVSSGDT 1099 (1747)
T ss_pred cccc-cccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhc--CCCEEEEecch
Confidence 1000 00000111223457999999999999888888888764 34668888743
No 400
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.73 E-value=4.5e-05 Score=61.98 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 022641 85 MLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~ 105 (294)
+++.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 579999999999999999887
No 401
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.72 E-value=4.1e-05 Score=49.33 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999999886
No 402
>PRK14530 adenylate kinase; Provisional
Probab=97.70 E-value=4.3e-05 Score=61.29 Aligned_cols=24 Identities=38% Similarity=0.800 Sum_probs=22.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
++++|+||||+||||+++.|++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999998
No 403
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.70 E-value=4.9e-05 Score=63.60 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
+.+.++|+.|+|||+|.-.+-..+.
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCC
Confidence 4599999999999999999888873
No 404
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.70 E-value=0.00013 Score=56.93 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=29.7
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC-cceEEEEecCC
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~ 195 (294)
.++.++++||.- .++......+.+.+..... ...+|+++.+.
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 456799999964 5788878888888776532 45567777654
No 405
>PRK06217 hypothetical protein; Validated
Probab=97.69 E-value=4.4e-05 Score=59.63 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+|.|++|+||||+++.|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999998
No 406
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.69 E-value=0.0007 Score=54.30 Aligned_cols=23 Identities=43% Similarity=0.793 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.|+++||||+||||+++.+++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999988
No 407
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.69 E-value=0.00032 Score=54.80 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~ 107 (294)
++++||||+|||+++..++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999887763
No 408
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.69 E-value=3.3e-05 Score=56.34 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
|+|.|+||+||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 409
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.68 E-value=0.00053 Score=56.74 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=48.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec-------CC---CCcchhHHHHHHHHHHhhhcccCccCCCCCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN-------AS---DDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (294)
-++|+|.||+|||++++.|...+... +..+..++ .. +.......+..+........+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~---~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls---------- 69 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEK---GKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS---------- 69 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHT---T--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT----------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc---CCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc----------
Confidence 38999999999999999999987331 12222222 11 112233444444444433322
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEE
Q 022641 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (294)
Q Consensus 154 ~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~ 191 (294)
+..++|+|+..++ .+..-.|+.+-....-..++|.+
T Consensus 70 -~~~iVI~Dd~nYi-Kg~RYelyclAr~~~~~~c~i~~ 105 (270)
T PF08433_consen 70 -KDTIVILDDNNYI-KGMRYELYCLARAYGTTFCVIYC 105 (270)
T ss_dssp -T-SEEEE-S---S-HHHHHHHHHHHHHTT-EEEEEEE
T ss_pred -cCeEEEEeCCchH-HHHHHHHHHHHHHcCCCEEEEEE
Confidence 2259999999887 56667777766655544444443
No 410
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=0.00022 Score=56.12 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=30.4
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC-cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~ 196 (294)
.++.++++||.. .++......+.+.+..... ...+|+++.+..
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 456799999965 5777777778877776532 456777776643
No 411
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00013 Score=63.38 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=67.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCcc-------CCCCCCCCc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-------RGGYPCPPY 156 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 156 (294)
.++|+||+|+||||++..++..+.... +..+..+++...+.... ..+........-.... .........
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~--G~~V~Lit~Dt~R~aA~--eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHM--GKSVSLYTTDNYRIAAI--EQLKRYADTMGMPFYPVKDIKKFKETLARDGS 300 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEecccchhhhHH--HHHHHHHHhcCCCeeehHHHHHHHHHHHhCCC
Confidence 488999999999999999997652111 12222222222111111 1111111110000000 000001345
Q ss_pred EEEEEeCCCCCC--HHHHHHHHHHHHhh----cCcceEEEEecCCcccchHhhcccc-----EEEecCCCHHHHHHHHHH
Q 022641 157 KIIILDEADSMT--EDAQNALRRTMETY----SKVTRFFFICNYISRIIEPLASRCA-----KFRFKPLSEEVMSSRVLH 225 (294)
Q Consensus 157 ~lliiDei~~l~--~~~~~~L~~~l~~~----~~~~~ii~~~~~~~~~~~~l~~r~~-----~i~~~~~~~~~~~~~l~~ 225 (294)
++|+||=.++.+ ....+.|..++... +....+++.++....-...+..+|. -+-|..++.......+-.
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G~il~ 380 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLE 380 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCccHHHH
Confidence 799999877654 45566676666542 2233344444433322233333332 455555665444444444
Q ss_pred HHHHhCC
Q 022641 226 ICNEEGL 232 (294)
Q Consensus 226 ~~~~~~~ 232 (294)
++...+.
T Consensus 381 i~~~~~l 387 (432)
T PRK12724 381 LADTYSK 387 (432)
T ss_pred HHHHHCC
Confidence 4444443
No 412
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.65 E-value=0.0014 Score=54.16 Aligned_cols=49 Identities=27% Similarity=0.422 Sum_probs=36.5
Q ss_pred CcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.+++++--.+...+.+..++.... ..++|+||+|+||||+++++...+.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 455566555666677777765433 3699999999999999999988763
No 413
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.65 E-value=0.0015 Score=57.65 Aligned_cols=53 Identities=26% Similarity=0.307 Sum_probs=41.6
Q ss_pred CCCcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCC
Q 022641 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (294)
Q Consensus 56 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~ 109 (294)
...+++.+...+.....+.+++..+. ..++++||.|+||||+..++...++.+
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~p~-GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNRPQ-GLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 34566777777777778887776654 258999999999999999999998543
No 414
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.65 E-value=0.00039 Score=57.15 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
++|+|+||+||||+|+.+++.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 415
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.65 E-value=0.00016 Score=72.72 Aligned_cols=146 Identities=22% Similarity=0.311 Sum_probs=88.3
Q ss_pred HHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcccCccCCC-
Q 022641 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG- 150 (294)
Q Consensus 72 ~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (294)
.+..+...+ .-.++|.||.|+|||.++..++++. +..++.++....... .+.+..+.....+...-+.+
T Consensus 431 ~~~~a~~~~-~~pillqG~tssGKtsii~~la~~~------g~~~vrinnhehtd~---qeyig~y~~~~~g~l~freg~ 500 (1856)
T KOG1808|consen 431 DLARAISSG-KFPILLQGPTSSGKTSIIKELARAT------GKNIVRINNHEHTDL---QEYIGTYVADDNGDLVFREGV 500 (1856)
T ss_pred HHHHHHhcC-CCCeEEecCcCcCchhHHHHHHHHh------ccCceehhccccchH---HHHHHhhhcCCCCCeeeehhH
Confidence 333334333 2359999999999999999999998 667777665443332 22333222211111110000
Q ss_pred --CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhc-----Cc---------ceEEEEecCC------cccchHhhccccE
Q 022641 151 --YPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----KV---------TRFFFICNYI------SRIIEPLASRCAK 208 (294)
Q Consensus 151 --~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~-----~~---------~~ii~~~~~~------~~~~~~l~~r~~~ 208 (294)
....+...+++||++..+.+..+.|.++++... .. ..++.+-|.+ ..+..++.+|+..
T Consensus 501 LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~e 580 (1856)
T KOG1808|consen 501 LVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFIE 580 (1856)
T ss_pred HHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccchh
Confidence 011234699999999999999999999998622 11 1122222332 2245677888888
Q ss_pred EEecCCCHHHHHHHHHHHH
Q 022641 209 FRFKPLSEEVMSSRVLHIC 227 (294)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~ 227 (294)
++|...+.++...++...+
T Consensus 581 ~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 581 LHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhhhcCchhhhhhhcccc
Confidence 8887777777777765544
No 416
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00081 Score=53.69 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=37.7
Q ss_pred CCcEEEEEeC-CCCCCHHHHHHHHHHHHhhc---CcceEEEEecCCcccchHhhcccc
Q 022641 154 PPYKIIILDE-ADSMTEDAQNALRRTMETYS---KVTRFFFICNYISRIIEPLASRCA 207 (294)
Q Consensus 154 ~~~~lliiDe-i~~l~~~~~~~L~~~l~~~~---~~~~ii~~~~~~~~~~~~l~~r~~ 207 (294)
.++.+||+|| ++.++....+.|++.+.+.. ....++++|.....+++-+-++..
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~ll 245 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLL 245 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEE
Confidence 4577999999 56777777777777776533 345588888887777766655543
No 417
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=5.5e-05 Score=56.14 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
+.+.|||||||||+++.++..+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh
Confidence 6789999999999999999998
No 418
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.63 E-value=6.5e-05 Score=58.19 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=22.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+.++|+|+||+||||+++.+++.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 369999999999999999999987
No 419
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.62 E-value=5.8e-05 Score=56.85 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
++|+|+||+||||+++.++..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999986
No 420
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.62 E-value=0.00062 Score=54.33 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=30.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (294)
.+.|+||||+|||+++..++...... +..++.++... .....+..
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC-CCHHHHHH
Confidence 38999999999999999998876432 34555565554 33343433
No 421
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00023 Score=61.00 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=50.0
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc--hhHHHHHHHHHHhhhcccCccCCC--------CC
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--INVVRTKIKTFAAVAVGSGQRRGG--------YP 152 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 152 (294)
..++|+||+|+||||++..++..+... +..+..+++...+. ...+....... ..+......+.. ..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~---g~~V~lItaDtyR~gAveQLk~yae~l-gvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQ---NRTVGFITTDTFRSGAVEQFQGYADKL-DVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCccCccHHHHHHHHhhcC-CCCEEecCCHHHHHHHHHHHHh
Confidence 358999999999999999999876322 22333344333322 22332222211 111100000000 00
Q ss_pred CCCcEEEEEeCCCCCC--HHHHHHHHHHHHh
Q 022641 153 CPPYKIIILDEADSMT--EDAQNALRRTMET 181 (294)
Q Consensus 153 ~~~~~lliiDei~~l~--~~~~~~L~~~l~~ 181 (294)
....++|+||=+++.+ ....+.|..+.+.
T Consensus 283 ~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 283 VNCVDHILIDTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence 1245799999998864 4455556555544
No 422
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.62 E-value=0.00098 Score=60.20 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 68 ~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+...+|...+.... .+++.|+.||||||=+-.+..+.
T Consensus 54 ~~r~~il~~ve~nq--vlIviGeTGsGKSTQipQyL~ea 90 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQ--VLIVIGETGSGKSTQIPQYLAEA 90 (674)
T ss_pred HHHHHHHHHHHHCC--EEEEEcCCCCCccccHhHHHHhc
Confidence 34456666666554 69999999999999776666554
No 423
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.61 E-value=5.4e-05 Score=57.89 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
++++||+|+||||+++.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999987
No 424
>PRK13948 shikimate kinase; Provisional
Probab=97.61 E-value=8.6e-05 Score=57.61 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=28.0
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
..+++|+|.+|+||||+++.+++.+ +..++..+
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~l------g~~~iD~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRAL------MLHFIDTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc------CCCEEECC
Confidence 4579999999999999999999998 66666554
No 425
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=9.6e-05 Score=57.43 Aligned_cols=43 Identities=9% Similarity=0.233 Sum_probs=30.5
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.++++||.- .++......+.+.+..... ...+++++.+..
T Consensus 117 ~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 117 MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 456799999964 6788888888888876544 356777776543
No 426
>PRK06696 uridine kinase; Validated
Probab=97.61 E-value=0.00013 Score=58.93 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHc---CCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 66 QEEVVRVLTNTLET---ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 66 ~~~~~~~l~~~l~~---~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
+...+..|.+.+.. +....|.|.|++|+||||+|+.|+..+.
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45566777776643 3333489999999999999999999883
No 427
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.61 E-value=0.00024 Score=60.13 Aligned_cols=131 Identities=19% Similarity=0.223 Sum_probs=69.9
Q ss_pred hhhcc-cHHHHHHHHHHHHc---CCC---CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHH
Q 022641 61 KDVAH-QEEVVRVLTNTLET---ANC---PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (294)
Q Consensus 61 ~~~~g-~~~~~~~l~~~l~~---~~~---~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (294)
.++.+ .+..+.-+.+++.. +.. ..++++|+.|+|||+++..+..-+ +.. ......+. .
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~-G~~-----~~~~~~~~--~------- 112 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLL-GDY-----ATTAVASL--K------- 112 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHh-Chh-----hccCCcch--h-------
Confidence 44443 44556666666532 211 128999999999999999887655 221 11000000 0
Q ss_pred HHHHHhhhcccCccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH--------------hhcCcceEEEEecCCccc-
Q 022641 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME--------------TYSKVTRFFFICNYISRI- 198 (294)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~--------------~~~~~~~ii~~~~~~~~~- 198 (294)
+...... ...........+++.||++.-.....+.|..+.. .......+|++||....+
T Consensus 113 ~~~~~~~------~f~~a~l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~ 186 (304)
T TIGR01613 113 MNEFQEH------RFGLARLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR 186 (304)
T ss_pred hhhccCC------CchhhhhcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC
Confidence 0000000 0000011234589999987532223345555553 122345688889876554
Q ss_pred --chHhhccccEEEec
Q 022641 199 --IEPLASRCAKFRFK 212 (294)
Q Consensus 199 --~~~l~~r~~~i~~~ 212 (294)
..++.+|+.+|.|+
T Consensus 187 ~~~~a~~RR~~vi~f~ 202 (304)
T TIGR01613 187 GFDGGIKRRLRIIPFT 202 (304)
T ss_pred CCChhheeeEEEEecc
Confidence 46788999888775
No 428
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.60 E-value=0.00015 Score=60.53 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+||+|+||||++..++..+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998873
No 429
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.60 E-value=0.0003 Score=54.32 Aligned_cols=23 Identities=48% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~ 107 (294)
++++|+||+|||+++..++..+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998873
No 430
>PRK14531 adenylate kinase; Provisional
Probab=97.60 E-value=8.1e-05 Score=58.10 Aligned_cols=23 Identities=43% Similarity=0.806 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++||||+||||+++.+++.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999987
No 431
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.59 E-value=0.001 Score=50.12 Aligned_cols=20 Identities=45% Similarity=0.818 Sum_probs=19.1
Q ss_pred EECCCCCCHHHHHHHHHHHh
Q 022641 87 FYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 87 l~Gp~G~GKT~la~~la~~~ 106 (294)
|.||||+||||+++.|++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999998
No 432
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.59 E-value=0.0009 Score=57.65 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..++|+||+|+||||+++++...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4699999999999999999998763
No 433
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.001 Score=62.95 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHHHHhhhcc----
Q 022641 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---- 143 (294)
Q Consensus 68 ~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 143 (294)
..+..|...+.... .++|.||+|+||||-+-.++-+... .....+.+..+.......+...+........+
T Consensus 53 ~~~~~i~~ai~~~~--vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 53 AVRDEILKAIEQNQ--VVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred HHHHHHHHHHHhCC--EEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 44566777776654 5999999999999998877766511 11112222222211222222222222222111
Q ss_pred cCccC-----------------------CCCCCCCcEEEEEeCCCCCCH--H-HHHHHHHHHHhhcCcceEEEEec
Q 022641 144 SGQRR-----------------------GGYPCPPYKIIILDEADSMTE--D-AQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 144 ~~~~~-----------------------~~~~~~~~~lliiDei~~l~~--~-~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
...+. ......++++|||||+|.=+- + .+..|.+++...+....+|+++.
T Consensus 128 Y~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSA 203 (845)
T COG1643 128 YSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSA 203 (845)
T ss_pred EEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 00000 012346788999999997442 2 34556666777666677777763
No 434
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.59 E-value=0.0011 Score=56.68 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=22.3
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++++||+|+||||+++++....
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHccc
Confidence 489999999999999999999876
No 435
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.58 E-value=0.00013 Score=62.41 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=24.9
Q ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 80 ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 80 ~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
++.+..+|+||+|||||++++.+++.+.
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5566799999999999999999999874
No 436
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.58 E-value=9.3e-05 Score=57.09 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=22.5
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+++|+|++|+||||+++.++..+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999999987
No 437
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.56 E-value=0.0013 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.1
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+||.|+||||+++.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 468999999999999999998654
No 438
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00066 Score=59.49 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|+||+|+||||++..|+..+
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998764
No 439
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.0012 Score=52.47 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..+.|.||+|+|||||++.++....
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCC
Confidence 4699999999999999999998763
No 440
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.55 E-value=0.00061 Score=55.07 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=26.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
.++|+||||+|||+++..++.+.... +..++.++..
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~---~~~v~yi~~e 60 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKN---GKKVIYIDTE 60 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 38999999999999999999876422 3344445444
No 441
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.55 E-value=9.4e-05 Score=59.65 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.||||+||||+++.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999998
No 442
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.54 E-value=0.0017 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
++|+||+|+|||+++..+++.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~ 23 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL 23 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999999987
No 443
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.0053 Score=52.67 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=40.7
Q ss_pred cccEEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHhhccCcHHHHHHHHH
Q 022641 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAITYLQ 258 (294)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~l~~l~~~~~G~~r~~~~~l~ 258 (294)
-|..|++++++.+|...++.++...+=+. .+++....+.-+++|||+....++.
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca 458 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCA 458 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHH
Confidence 45578999999999999999988754221 3477788888889999965554443
No 444
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.54 E-value=0.00059 Score=56.63 Aligned_cols=24 Identities=46% Similarity=0.617 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+||+|+||||++..+|..+.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 488999999999999999998773
No 445
>PRK05973 replicative DNA helicase; Provisional
Probab=97.54 E-value=0.00058 Score=55.17 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.|+||+|||+++..++...
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 38999999999999999988776
No 446
>PRK13946 shikimate kinase; Provisional
Probab=97.53 E-value=0.00011 Score=57.43 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=26.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeec
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~ 120 (294)
.+|+|+|++|+|||++++.+++.+ +.+++..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L------g~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML------GLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc------CCCeECcC
Confidence 469999999999999999999998 55555443
No 447
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.53 E-value=0.00011 Score=57.42 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.2
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+.++|.||||+||||+++.+++.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999887
No 448
>PF13479 AAA_24: AAA domain
Probab=97.52 E-value=8.7e-05 Score=59.40 Aligned_cols=20 Identities=55% Similarity=1.077 Sum_probs=18.3
Q ss_pred cEEEECCCCCCHHHHHHHHH
Q 022641 84 HMLFYGPPGTGKTTTALAIA 103 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la 103 (294)
.++|+|+||+|||+++..+-
T Consensus 5 ~~lIyG~~G~GKTt~a~~~~ 24 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASLP 24 (213)
T ss_pred EEEEECCCCCCHHHHHHhCC
Confidence 59999999999999999883
No 449
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.52 E-value=0.0012 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.0
Q ss_pred CcEEEECCCCCCHHHHHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~ 104 (294)
..++|+||.|+||||+++.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3599999999999999999984
No 450
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.51 E-value=0.0021 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|+||+|||+++..++...
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 48999999999999999998765
No 451
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.51 E-value=0.00087 Score=51.40 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=24.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
++++|++|+|||++|..++... +.+++.+...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEcc
Confidence 6899999999999999998763 3455555433
No 452
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.49 E-value=0.0011 Score=59.15 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=26.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
.++|+|+||+|||+++..++...... +..++.++..
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~E 117 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGE 117 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcc
Confidence 48999999999999999999876311 3344555443
No 453
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.49 E-value=0.00095 Score=69.37 Aligned_cols=121 Identities=14% Similarity=0.201 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcchhHHHHHHHH-------HH
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT-------FA 138 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 138 (294)
.+.....+..++.+ ..+..+|.|++|||||++++.+...+... +..++.+. +.......+.+.... ..
T Consensus 431 s~~Q~~Av~~il~s-~~~v~ii~G~aGTGKTt~l~~l~~~~~~~---G~~V~~lA-PTgrAA~~L~e~~g~~A~Ti~~~l 505 (1960)
T TIGR02760 431 SPSNKDAVSTLFTS-TKRFIIINGFGGTGSTEIAQLLLHLASEQ---GYEIQIIT-AGSLSAQELRQKIPRLASTFITWV 505 (1960)
T ss_pred CHHHHHHHHHHHhC-CCCeEEEEECCCCCHHHHHHHHHHHHHhc---CCeEEEEe-CCHHHHHHHHHHhcchhhhHHHHH
Confidence 44555566655554 33468999999999999999998876322 33444443 222222222221110 00
Q ss_pred hhhcccC-------ccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhhcCcceEEEEec
Q 022641 139 AVAVGSG-------QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 139 ~~~~~~~-------~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
....... ...........++||+||+.+++......|++.... ....+|+++.
T Consensus 506 ~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~--~garvVlvGD 565 (1960)
T TIGR02760 506 KNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQ--HNSKLILLND 565 (1960)
T ss_pred HhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhh--cCCEEEEEcC
Confidence 0000000 000111224567999999999999888888877654 4466777764
No 454
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.48 E-value=0.00015 Score=55.98 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=25.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (294)
+++|+|++|+|||++++.+++.+ +.+++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l------g~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL------GYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh------CCCEEEc
Confidence 58999999999999999999998 5555543
No 455
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.0011 Score=49.00 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
-+++.|++|+||||++++++.++
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l 36 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEEL 36 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHh
Confidence 38999999999999999999999
No 456
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.47 E-value=0.00039 Score=58.56 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+|||+++..+++.+
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~ 28 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRL 28 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhC
Confidence 48999999999999999999987
No 457
>PRK10867 signal recognition particle protein; Provisional
Probab=97.46 E-value=0.00078 Score=59.37 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=21.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++++|++|+||||++..+|..+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 389999999999999999998773
No 458
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.45 E-value=0.0017 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred CcEEEECCCCCCHHHHHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTALAIAH 104 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~ 104 (294)
+.++|+||.|+|||++++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4599999999999999999984
No 459
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.44 E-value=0.00079 Score=63.04 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=33.1
Q ss_pred CCCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCCc
Q 022641 153 CPPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (294)
Q Consensus 153 ~~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~~ 196 (294)
..++.+|++||+- .+++.....+.+.+........+|+++....
T Consensus 625 l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ 669 (709)
T COG2274 625 LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLS 669 (709)
T ss_pred ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccch
Confidence 3678899999985 5677777778888877776677788876543
No 460
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.44 E-value=0.0033 Score=48.75 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=34.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCc-ceEEEEecCCcccchHhhccccEEEe
Q 022641 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKV-TRFFFICNYISRIIEPLASRCAKFRF 211 (294)
Q Consensus 155 ~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~-~~ii~~~~~~~~~~~~l~~r~~~i~~ 211 (294)
++.++++||.. .++......+.+.+...... ..+|+++.....+ ...+|+..++.
T Consensus 116 ~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~--~~adrvi~i~~ 172 (178)
T cd03239 116 PSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF--ENADKLIGVLF 172 (178)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH--hhCCeEEEEEE
Confidence 34699999987 56777777777777654333 5677777664422 23444444443
No 461
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.44 E-value=0.0012 Score=57.35 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=21.5
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+|+||+|||+++..++..+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998763
No 462
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.43 E-value=0.0011 Score=59.09 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
|+.+++.+...... ....+++-|+|+|||.++..++..+
T Consensus 41 Q~~al~a~~~~~~~--~~~gvivlpTGaGKT~va~~~~~~~ 79 (442)
T COG1061 41 QEEALDALVKNRRT--ERRGVIVLPTGAGKTVVAAEAIAEL 79 (442)
T ss_pred HHHHHHHHHhhccc--CCceEEEeCCCCCHHHHHHHHHHHh
Confidence 44444444444443 3458899999999999999999988
No 463
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.42 E-value=0.0025 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.0
Q ss_pred CcEEEECCCCCCHHHHHHHHHHH
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~ 105 (294)
..++|+||.|+|||++++.++..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998744
No 464
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.42 E-value=0.00038 Score=54.83 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=31.3
Q ss_pred CcEEEEEeCCCCCC-HHHH-----HHHHHHHH-hhcCcceEEEEecCCcccchHhhcccc
Q 022641 155 PYKIIILDEADSMT-EDAQ-----NALRRTME-TYSKVTRFFFICNYISRIIEPLASRCA 207 (294)
Q Consensus 155 ~~~lliiDei~~l~-~~~~-----~~L~~~l~-~~~~~~~ii~~~~~~~~~~~~l~~r~~ 207 (294)
...+|||||++..- .... ....+.+. .+....-++++|..+..++..++..+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve 138 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVE 138 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHh
Confidence 45699999999752 2211 12224443 344566789999999988888887655
No 465
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.42 E-value=0.0026 Score=55.92 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.8
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
.++|+|++|+||||++..+|..+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998774
No 466
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.42 E-value=0.0029 Score=48.28 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+++||.|+|||+++++++-.+
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999976655
No 467
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.41 E-value=0.00031 Score=59.36 Aligned_cols=46 Identities=28% Similarity=0.417 Sum_probs=38.8
Q ss_pred hhhcccHHHHHHHHHHHHcC------CCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 61 KDVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~------~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++.|.++.+..+...+... ..+.++|.||+|+|||++++.|.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999998877542 33459999999999999999999887
No 468
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.41 E-value=0.0037 Score=50.99 Aligned_cols=39 Identities=31% Similarity=0.369 Sum_probs=27.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC-CC--------ccCCcceeecCCC
Q 022641 85 MLFYGPPGTGKTTTALAIAHQLFG-PE--------LYKSRVLELNASD 123 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~~~-~~--------~~~~~~~~~~~~~ 123 (294)
.+|+||+|+|||+++..++..+.. .. .....++.++..+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 589999999999999999887531 11 1234566666655
No 469
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.40 E-value=0.00014 Score=56.47 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||+|+||||+++.|+..+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999886
No 470
>PRK14529 adenylate kinase; Provisional
Probab=97.40 E-value=0.0019 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.715 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+++|.||||+||||.++.|++.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999998
No 471
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.40 E-value=0.00017 Score=57.66 Aligned_cols=22 Identities=45% Similarity=0.844 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 022641 85 MLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~~ 106 (294)
++|+||||+||||+++.|++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999887
No 472
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00012 Score=58.48 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.1
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
...+.|.||+|||||||.+.++--.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3459999999999999999999866
No 473
>PRK08233 hypothetical protein; Provisional
Probab=97.40 E-value=0.00014 Score=56.62 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.3
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.+.|.|+||+||||++..|+..+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47889999999999999999987
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.39 E-value=0.00034 Score=54.75 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 68 ~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.....|...+..+ .+++|+||+|+||||++++++..+
T Consensus 13 ~~~~~l~~~v~~g--~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 13 LQAAYLWLAVEAR--KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444555555554 379999999999999999999876
No 475
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.39 E-value=0.00031 Score=59.59 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=26.6
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceee
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~ 119 (294)
.+|+|+|++|+|||++++.++..+ +.+++.+
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~L------g~~~id~ 164 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARL------GVPFVEL 164 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc------CCCEEeH
Confidence 359999999999999999999998 6666643
No 476
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.39 E-value=0.0021 Score=63.69 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 68 ~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+..+...+.... .++|+|++|+||||.+=.+..+.
T Consensus 70 ~~~~~Il~~l~~~~--vvii~g~TGSGKTTqlPq~lle~ 106 (1283)
T TIGR01967 70 AKREDIAEAIAENQ--VVIIAGETGSGKTTQLPKICLEL 106 (1283)
T ss_pred HHHHHHHHHHHhCc--eEEEeCCCCCCcHHHHHHHHHHc
Confidence 33466667776544 69999999999999887666554
No 477
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.38 E-value=0.0017 Score=52.75 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=57.5
Q ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCCCCcc--hhHHHHHHHHHHhhh-------------cccC
Q 022641 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--INVVRTKIKTFAAVA-------------VGSG 145 (294)
Q Consensus 81 ~~~~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------~~~~ 145 (294)
....+-|+|.+||||||+++.+....... .--+.+.+.+... .....+.+..+.... .+++
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt----~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT----SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC----CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 34469999999999999999998865211 1112222222111 211222222221110 0111
Q ss_pred ccC----CCCCCCCcEEEEEeCCCC-CCHHHHHHHHHHHHhhc--CcceEEEEecC
Q 022641 146 QRR----GGYPCPPYKIIILDEADS-MTEDAQNALRRTMETYS--KVTRFFFICNY 194 (294)
Q Consensus 146 ~~~----~~~~~~~~~lliiDei~~-l~~~~~~~L~~~l~~~~--~~~~ii~~~~~ 194 (294)
+.. .....-++.+++.||.-. ++...+..++.++.+.. ....+++++.+
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHD 169 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHD 169 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 100 001124577999999764 45666666666665443 34556777754
No 478
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.38 E-value=0.0025 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.4
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++||+|||||+++..++..+
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999986666555
No 479
>PRK14527 adenylate kinase; Provisional
Probab=97.37 E-value=0.00019 Score=56.43 Aligned_cols=25 Identities=44% Similarity=0.777 Sum_probs=22.6
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
+..++++||||+||||+++.+++.+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999887
No 480
>PLN02200 adenylate kinase family protein
Probab=97.37 E-value=0.00022 Score=57.83 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.6
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|+||||+||||+++.+++.+
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 481
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.37 E-value=0.002 Score=59.05 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=29.4
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEec
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICN 193 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~ 193 (294)
.++.++++||.- .++......+.+.+........+|+++.
T Consensus 487 ~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItH 527 (529)
T TIGR02868 487 ADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITH 527 (529)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 577899999986 4677777778888876655555666654
No 482
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.37 E-value=0.0041 Score=49.95 Aligned_cols=36 Identities=36% Similarity=0.616 Sum_probs=26.9
Q ss_pred cEEEECCCCCCHHHHHHHHHHHhcCCCccCCcceeecCC
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 122 (294)
.++|+|+||+|||+++..++...... +..++.++..
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~~~~---g~~v~yi~~e 56 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQ---GKKVAYIDTE 56 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence 38999999999999999999887322 3345555543
No 483
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.37 E-value=0.0013 Score=61.47 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHH
Q 022641 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA 101 (294)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~ 101 (294)
.|..++..+..-+......+.++.||+|+|||.++-.
T Consensus 239 ~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l 275 (630)
T TIGR00643 239 AQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAAL 275 (630)
T ss_pred HHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHH
Confidence 4666666666666555556799999999999997643
No 484
>PTZ00293 thymidine kinase; Provisional
Probab=97.37 E-value=0.00022 Score=56.19 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.3
Q ss_pred cEEEECCCCCCHHH-HHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTT-TALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~-la~~la~~~ 106 (294)
.-+++||-|+|||+ |++.+.+..
T Consensus 6 i~vi~GpMfSGKTteLLr~i~~y~ 29 (211)
T PTZ00293 6 ISVIIGPMFSGKTTELMRLVKRFT 29 (211)
T ss_pred EEEEECCCCChHHHHHHHHHHHHH
Confidence 46889999999999 888877654
No 485
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.36 E-value=0.00022 Score=55.26 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.7
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..++|+|++|+||||+++.++..+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999883
No 486
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.00014 Score=61.50 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.0
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++|.||+||||||+++.+|--.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999754
No 487
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.36 E-value=0.0063 Score=54.85 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=35.5
Q ss_pred CcchhhcccHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
..+.++--.+.....+..++.... ..++++||+|+||||++.++.+.+.
T Consensus 219 ~~l~~Lg~~~~~~~~l~~~~~~~~-GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 219 LDLETLGMSPELLSRFERLIRRPH-GIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHhccC
Confidence 345555445666667776665443 3589999999999999998887763
No 488
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.36 E-value=0.00019 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.6
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..+.|+||+|||||++.+.+|...
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 359999999999999999999865
No 489
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.36 E-value=0.0018 Score=60.13 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=31.5
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCC
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~ 195 (294)
.+++++++||.- .+++.....+.+.+........+|++|.+.
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 567899999975 567777777888887765566677777664
No 490
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.36 E-value=0.0016 Score=55.54 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=20.6
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
++.+.|+|..|||||+|--.+-.++
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcC
Confidence 3459999999999999987776554
No 491
>PRK04040 adenylate kinase; Provisional
Probab=97.35 E-value=0.00018 Score=56.33 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.7
Q ss_pred cEEEECCCCCCHHHHHHHHHHHh
Q 022641 84 HMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 84 ~ill~Gp~G~GKT~la~~la~~~ 106 (294)
.++++|+||+||||+++.+++.+
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 492
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.35 E-value=0.0013 Score=52.23 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=31.1
Q ss_pred CCcEEEEEeCCC-CCCHHHHH-HHHHHHHhhcC--cceEEEEecCCc
Q 022641 154 PPYKIIILDEAD-SMTEDAQN-ALRRTMETYSK--VTRFFFICNYIS 196 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~-~L~~~l~~~~~--~~~ii~~~~~~~ 196 (294)
.++.++++||.. .+++.... .+.+.+..... ...+|+++....
T Consensus 138 ~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~ 184 (204)
T cd03240 138 SNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE 184 (204)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH
Confidence 467899999975 67777777 88888876544 446777776643
No 493
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.35 E-value=0.00014 Score=55.61 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 022641 85 MLFYGPPGTGKTTTALAIAHQ 105 (294)
Q Consensus 85 ill~Gp~G~GKT~la~~la~~ 105 (294)
|+|+|++|||||||++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 494
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.003 Score=58.30 Aligned_cols=227 Identities=14% Similarity=0.077 Sum_probs=124.1
Q ss_pred hhcCCCcchhhcccHHHHHHHHHH------HHcCCCCcEEEEC----CCCCCHHHHHHHHHHHhcC----CCccCCccee
Q 022641 53 EKYRPKQVKDVAHQEEVVRVLTNT------LETANCPHMLFYG----PPGTGKTTTALAIAHQLFG----PELYKSRVLE 118 (294)
Q Consensus 53 ~~~~~~~~~~~~g~~~~~~~l~~~------l~~~~~~~ill~G----p~G~GKT~la~~la~~~~~----~~~~~~~~~~ 118 (294)
+..+|..+.++.+++......... ........+...| ++|++++..+..+.....- .......+..
T Consensus 96 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 175 (647)
T COG1067 96 PAGRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVE 175 (647)
T ss_pred cccCCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhh
Confidence 445566777777776555433222 1222223477777 9999999998766555310 0001111111
Q ss_pred ec---CCCCc--chhHHHHHHHHHHhhhccc--------CccCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhh---
Q 022641 119 LN---ASDDR--GINVVRTKIKTFAAVAVGS--------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY--- 182 (294)
Q Consensus 119 ~~---~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~lliiDei~~l~~~~~~~L~~~l~~~--- 182 (294)
.. ..... .......++.........+ ...++....+..++|||||+..|....++.+++.+...
T Consensus 176 ~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~ 255 (647)
T COG1067 176 LSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQP 255 (647)
T ss_pred hccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhcccc
Confidence 10 00000 0111112222222222221 12456667788999999999999966666666555422
Q ss_pred ------------------cCcceEEEEecCC--cc---cchHhhccccE-EEecCC---CHHHHHHHHHHHHH----H-h
Q 022641 183 ------------------SKVTRFFFICNYI--SR---IIEPLASRCAK-FRFKPL---SEEVMSSRVLHICN----E-E 230 (294)
Q Consensus 183 ------------------~~~~~ii~~~~~~--~~---~~~~l~~r~~~-i~~~~~---~~~~~~~~l~~~~~----~-~ 230 (294)
+-...+|+++|.. .. .++.+..-+.. ..|... ++++...+++.+++ . +
T Consensus 256 ~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ 335 (647)
T COG1067 256 IWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGN 335 (647)
T ss_pred ccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCC
Confidence 2344566666532 12 23333333322 444432 45666666555554 3 2
Q ss_pred CCCCCHHHHHHHHhhcc----------CcHHHHHHHHHHHHHHh----CCCCChhhhhhhccc
Q 022641 231 GLNLDAEALSTLSSISQ----------GDLRRAITYLQGAARLF----GSSITSKDLISVSGY 279 (294)
Q Consensus 231 ~~~~~~~~l~~l~~~~~----------G~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~ 279 (294)
-..++.+++..|..... =.+|.+.++++.++..+ .+.|+.+||.+++..
T Consensus 336 ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 336 IPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred CCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 34589999888776521 26888889888777666 234999999998876
No 495
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.34 E-value=0.00045 Score=58.50 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHh
Q 022641 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 69 ~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
....|..++..+. |++++|++|+||||+++++....
T Consensus 133 ~~~~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 133 QASVIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHH
Confidence 3455566666543 89999999999999999999876
No 496
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.34 E-value=0.00043 Score=59.69 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 82 ~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
...++++||+|+||||+++++.+.+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34699999999999999999998873
No 497
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00081 Score=54.48 Aligned_cols=46 Identities=9% Similarity=0.231 Sum_probs=32.7
Q ss_pred CCCcEEEEEeCC-CCCCHHHHHHHHHHHHhhcC-cceEEEEecCCccc
Q 022641 153 CPPYKIIILDEA-DSMTEDAQNALRRTMETYSK-VTRFFFICNYISRI 198 (294)
Q Consensus 153 ~~~~~lliiDei-~~l~~~~~~~L~~~l~~~~~-~~~ii~~~~~~~~~ 198 (294)
..+++++++||- ..++...+..+.++|.+... ...+++++.+...+
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v 202 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV 202 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh
Confidence 357789999994 56778888888888876655 45566667665543
No 498
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.33 E-value=0.0021 Score=59.59 Aligned_cols=42 Identities=19% Similarity=0.345 Sum_probs=31.4
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhhcCcceEEEEecCC
Q 022641 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (294)
Q Consensus 154 ~~~~lliiDei~-~l~~~~~~~L~~~l~~~~~~~~ii~~~~~~ 195 (294)
.++.++++||.- .++......+.+.+........+|++|.+.
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~ 528 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRL 528 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhh
Confidence 567899999975 577777778888887765556677777654
No 499
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.32 E-value=0.016 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.4
Q ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Q 022641 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (294)
Q Consensus 83 ~~ill~Gp~G~GKT~la~~la~~~ 106 (294)
..++|+|++|+|||+++..+...-
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcch
Confidence 569999999999999999988753
No 500
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.32 E-value=0.00058 Score=63.53 Aligned_cols=40 Identities=35% Similarity=0.544 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHHHhc
Q 022641 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (294)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~ill~Gp~G~GKT~la~~la~~~~ 107 (294)
++.....+..++... +.++|.||||||||+++..+..++.
T Consensus 159 n~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~t~~~ii~~~~ 198 (637)
T TIGR00376 159 NESQKEAVSFALSSK--DLFLIHGPPGTGKTRTLVELIRQLV 198 (637)
T ss_pred CHHHHHHHHHHhcCC--CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 566666676666432 3689999999999999998888763
Done!